# RGD-PIPELINE: ftp-file-extracts # MODULE: chinchilla-genes-version-2023-03-10 # GENERATED-ON: 2025/03/22 # PURPOSE: information about active chinchilla genes extracted from RGD database # CONTACT: rgd.data@mcw.edu # FORMAT: tab delimited text # NOTES: multiple values in a single column are separated by ';' # #COLUMN INFORMATION: #1 GENE_RGD_ID RGD_ID of the gene #2 GENE_TYPE gene type #3 SYMBOL official gene symbol #4 NAME gene name #5 GENE_DESC gene description (if available) #6 CONTIG contig acc id #7 START_POS start position within contig #8 STOP_POS stop position within contig #9 STRAND strand information #10 NCBI_GENE_ID NCBI Gene ID #11 GENBANK_NUCLEOTIDE GenBank Nucleotide ID(s) #12 GENBANK_PROTEIN GenBank Protein ID(s) #13 GENE_REFSEQ_STATUS gene RefSeq Status (from NCBI) 9028787 protein-coding LOC102010081 vomeronasal secretory protein 2-like NW_004955513 2601129 2609926 + 102010081 AGCD01066882;AGCD01066883;GBDF01023674;XM_005408421;XM_005408422;XM_013506591 XP_005408478;XP_005408479;XP_013362045 MODEL 9043098 pseudo LOC102011212 rRNA-processing protein FCF1 homolog pseudogene NW_004955494 5808071 5843724 - 102011212 AGCD01061526 MODEL 8914789 ncrna LOC102010085 uncharacterized LOC102010085 NW_004955518 1844184 1923729 + 102010085 AGCD01067766;AGCD01067767;AGCD01067768;AGCD01067769;GBDJ01260326;XR_264565 MODEL 8789268 ncrna LOC102011218 uncharacterized LOC102011218 NW_004955424 20490173 20500552 + 102011218 AGCD01024856;AGCD01024857;AGCD01024858;GBCB01025533;XR_001234179;XR_261091 MODEL 8936265 pseudo LOC102010087 heparan-alpha-glucosaminide N-acetyltransferase pseudogene NW_004955434 9056708 9057564 - 102010087 AGCD01032287 MODEL 9060791 ncrna LOC102011220 uncharacterized LOC102011220 NW_004955425 27826699 27828785 - 102011220 AGCD01025989;GBDF01079916;XR_261178 MODEL 8911961 pseudo LOC102010093 ubiquitin carboxyl-terminal hydrolase isozyme L5 pseudogene NW_004955439 3610566 3611918 + 102010093 AGCD01035681 MODEL 8820365 ncrna LOC102010095 uncharacterized LOC102010095 NW_004955440 18493660 18495295 + 102010095 AGCD01036610;GBDF01126738;XR_001235248 MODEL 8934635 pseudo LOC102011221 DNA-directed RNA polymerase II subunit RPB3 pseudogene NW_004955426 24102744 24103895 + 102011221 AGCD01026668 MODEL 9000818 pseudo LOC102009312 60S ribosomal protein L17 pseudogene NW_004955434 13427369 13427899 + 102009312 AGCD01032402 MODEL 8839916 protein-coding LOC102011222 translation initiation factor IF-2-like NW_004955504 1462038 1467322 + 102011222 AGCD01064839;AGCD01064840;GBDI01357943;GBDK01076347;XM_013505915 XP_013361369 MODEL 8990038 protein-coding Selp selectin P ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); fucose binding (ortholog); INVOLVED IN calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); cell-cell adhesion (ortholog); heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); acute necrotizing pancreatitis (ortholog); allergic disease (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular space (ortholog); membrane (ortholog) NW_004955462 7658371 7692870 + 102012290 AGCD01049309;GBBH01131804;XM_005398187 XP_005398244 MODEL 8711088 protein-coding LOC102009319 HLA class II histocompatibility antigen, DRB1-1 beta chain-like NW_004955437 1228243 1262090 - 102009319 AGCD01034197;AGCD01034198;GBDK01061271;XM_013517040;XM_013517041 XP_013372494;XP_013372495 MODEL 8997274 protein-coding LOC102010097 keratin, type II cytoskeletal 6A-like NW_004955547 2793016 2797170 - 102010097 AGCD01072294;XM_013508500 XP_013363954 MODEL 8932881 protein-coding Plekhh2 pleckstrin homology, MyTH4 and FERM domain containing H2 ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN negative regulation of actin filament depolymerization (ortholog); ASSOCIATED WITH genetic disease (ortholog); Lynch syndrome (ortholog); FOUND IN cortical actin cytoskeleton (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955441 10818982 10921224 + 102025179 AGCD01037094;AGCD01037095;GBDF01083557;XM_005390924;XM_005390925;XM_005390927;XM_005390928;XM_005390929;XM_005390930;XM_005390931;XM_005390932;XM_005390933;XM_013517541;XR_262069 XP_005390981;XP_005390982;XP_005390984;XP_005390985;XP_005390986;XP_005390987;XP_005390988;XP_005390989;XP_005390990;XP_013372995 MODEL 8851553 pseudo LOC102009321 MORC family CW-type zinc finger protein 2A pseudogene NW_004955438 6361423 6366279 + 102009321 AGCD01035101 MODEL 9044170 protein-coding Selplg selectin P ligand INVOLVED IN cellular response to interleukin-6 (ortholog); leukocyte adhesive activation (ortholog); leukocyte migration (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); carotid artery disease (ortholog); colitis (ortholog); FOUND IN plasma membrane (ortholog); plasma membrane raft (ortholog); uropod (ortholog) NW_004955455 9883271 9892572 - 102025759 AGCD01045931;AGCD01045932;GBDI01121877;XM_005396467;XM_005396469;XM_005396472 XP_005396524;XP_005396526;XP_005396529 MODEL 8724932 pseudo LOC102021426 E3 ubiquitin-protein ligase RING2 pseudogene NW_004955409 37557200 37558907 - 102021426 AGCD01010529 MODEL 8922533 pseudo LOC102011225 olfactory receptor 1013-like NW_004955511 1812470 1813401 + 102011225 AGCD01066380 MODEL 9032987 ncrna LOC102010099 uncharacterized LOC102010099 NW_004955558 861760 862614 + 102010099 AGCD01073396;GBDJ01283073;XR_001232330 MODEL 8996930 protein-coding Plekhh3 pleckstrin homology, MyTH4 and FERM domain containing H3 NW_004955451 16523822 16531563 - 102028607 AGCD01043687;AGCD01043688;GBBH01062427;GBCB01003667;XM_013519145 XP_013374599 MODEL 8849818 ncrna LOC102009325 uncharacterized LOC102009325 NW_004955442 15855701 15859607 - 102009325 AGCD01037883;GBDF01303907;XR_262159 MODEL 8957254 protein-coding LOC102011226 olfactory receptor 10AG1-like NW_004955511 918179 920370 - 102011226 AGCD01066346;XM_005408217 XP_005408274 MODEL 8933373 protein-coding LOC102021429 putative olfactory receptor 10D4 NW_004955412 24688405 24689343 - 102021429 AGCD01013121;XM_013510940 XP_013366394 MODEL 8723581 protein-coding Sem1 SEM1 26S proteasome subunit INVOLVED IN double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); squamous cell carcinoma (ortholog); FOUND IN integrator complex (ortholog); proteasome complex (ortholog); protein-containing complex (ortholog) NW_004955432 13134359 13156402 - 102019940 AGCD01031004;AGCD01031005;GBDF01043233;XM_005388071;XM_005388072 XP_005388128;XP_005388129 MODEL 8911962 pseudo LOC102010100 putative homeodomain transcription factor 2 pseudogene NW_004955442 14465591 14468091 + 102010100 AGCD01037821 MODEL 8727612 protein-coding Pcdhb1 protocadherin beta 1 ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955611 104824 131744 - 102015586 AGCD01077145;AGCD01077146;GBBH01009968;XM_005414939 XP_005414996 MODEL 9060732 ncrna LOC102009328 uncharacterized LOC102009328 NW_004955558 871030 888543 + 102009328 AGCD01073396;AGCD01073397;AGCD01073398;AGCD01073399;GBDF01225099;XR_001232328;XR_001232329 MODEL 8970421 ncrna LOC102021430 uncharacterized LOC102021430 NW_004955413 23270738 23276929 + 102021430 AGCD01014329;GBDF01129567;XR_260096 MODEL 8962766 protein-coding Plekhj1 pleckstrin homology domain containing J1 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog) NW_004955495 5904410 5907211 + 102017470 AGCD01062043;GBDF01082206;XM_005405916 XP_005405973 MODEL 9064412 ncrna LOC102011229 uncharacterized LOC102011229 NW_004955515 241 57618 - 102011229 AGCD01067170;AGCD01067171;AGCD01067172;AGCD01067173;AGCD01067174;AGCD01067175;AGCD01067176;AGCD01067177;AGCD01067178;AGCD01067179;AGCD01067180;AGCD01067181;GBCE01018606;XR_264517 MODEL 10105239 ncrna LOC106149786 uncharacterized LOC106149786 NW_004955453 15381291 15387793 - 106149786 AGCD01044891;GBDK01295473;XR_001236176;XR_001236177 MODEL 39131397 protein-coding PDX1 pancreatic and duodenal homeobox 1 8868220 pseudo LOC102023157 C-Myc-binding protein pseudogene NW_004955486 9448816 9449441 - 102023157 AGCD01059186 MODEL 9036501 protein-coding Sema3a semaphorin 3A ENCODES a protein that exhibits chemorepellent activity (ortholog); neuropilin binding (ortholog); semaphorin receptor binding (ortholog); INVOLVED IN axon extension (ortholog); axon extension involved in axon guidance (ortholog); axon guidance (ortholog); ASSOCIATED WITH amenorrhea (ortholog); CHARGE syndrome (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN axon (ortholog); cerebellar climbing fiber to Purkinje cell synapse (ortholog); dendrite (ortholog) NW_004955410 2146088 2344342 + 102029719 AGCD01010629;GBDJ01165559;GBDK01233873;XM_005377190 XP_005377247 MODEL 9047385 pseudo LOC102010103 ubiquitin-conjugating enzyme E2 J1 pseudogene NW_004955444 6424523 6426955 - 102010103 AGCD01038865 MODEL 39132831 snorna SNORA73 Small nucleolar RNA SNORA73 family 9027641 protein-coding Ralgps1 Ral GEF with PH domain and SH3 binding motif 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN regulation of Ral protein signal transduction (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955419 1334627 1593828 - 102007341 AGCD01019647;AGCD01019648;AGCD01019649;AGCD01019650;AGCD01019651;GBDJ01260608;XM_005382439;XM_005382440;XM_005382441;XM_005382442;XM_005382443;XM_005382444;XM_005382445;XM_005382446;XM_013513184;XM_013513185 XP_005382496;XP_005382497;XP_005382498;XP_005382499;XP_005382500;XP_005382501;XP_005382502;XP_005382503;XP_013368638;XP_013368639 MODEL 8828575 protein-coding Phf11 PHD finger protein 11 ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955431 2945119 2974767 + 102025491 AGCD01029942;AGCD01029943;AGCD01029944;GBDJ01072576;XM_005387593 XP_005387650 MODEL 9036277 pseudo LOC102018464 40S ribosomal protein S10 pseudogene NW_004955406 4674448 4678458 - 102018464 AGCD01005699 MODEL 8966202 protein-coding LOC102017325 uncharacterized LOC102017325 NW_004955413 6210739 6233554 - 102017325 AGCD01013713;AGCD01013714;AGCD01013715;AGCD01013716;AGCD01013717;GBDF01051656;XM_005379609 XP_005379666 MODEL 8837161 protein-coding Ralgps2 Ral GEF with PH domain and SH3 binding motif 2 ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955406 18161587 18267737 + 102026072 AGCD01006023;AGCD01006024;AGCD01006025;GBDK01430642;GBDK01430645;XM_005374939 XP_005374996 MODEL 10234093 ncrna LOC106146958 uncharacterized LOC106146958 NW_004955407 31658423 31710521 - 106146958 AGCD01007655;AGCD01007656;AGCD01007657;GBDF01162859;XR_001231631;XR_001231632;XR_001231633 MODEL 8800471 protein-coding LOC102007836 uncharacterized LOC102007836 NW_004955599 462585 469137 + 102007836 AGCD01076650;AGCD01076651;GBDJ01147444;XM_005414765;XR_265153 XP_005414822 MODEL 8791097 pseudo LOC102011231 heterogeneous nuclear ribonucleoprotein F-like NW_004955516 4862856 4863984 - 102011231 AGCD01067538 MODEL 8753406 protein-coding LOC102008206 olfactory receptor 2B6-like NW_004955465 13463709 13464717 + 102008206 AGCD01050609;XM_005398954 XP_005399011 MODEL 8935425 protein-coding Trib3 tribbles pseudokinase 3 ENCODES a protein that exhibits enzyme binding (ortholog); kinase activity (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Experimental Liver Cirrhosis (ortholog); Insulin Resistance (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955597 259209 265896 + 102020072 AGCD01076551;AGCD01076552;GBBH01224966;XM_005414716 XP_005414773 MODEL 9008630 pseudo LOC102005302 protein C3orf33 pseudogene NW_004955438 15478440 15479305 - 102005302 AGCD01035370 MODEL 8744360 protein-coding Rbm47 RNA binding motif protein 47 ENCODES a protein that exhibits enzyme binding (ortholog); enzyme-substrate adaptor activity (ortholog); mRNA 3'-UTR binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); cytidine to uridine editing (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH Hyperglycinemia, Lactic Acidosis, and Seizures (ortholog); juvenile rheumatoid arthritis (ortholog); FOUND IN apolipoprotein B mRNA editing enzyme complex (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955443 6940523 7100130 + 102016758 AGCD01038268;AGCD01038269;AGCD01038270;AGCD01038271;AGCD01038272;GBBH01118381;XM_005391951;XM_005391952;XM_005391953;XM_005391954 XP_005392008;XP_005392009;XP_005392010;XP_005392011 MODEL 8859908 ncrna LOC102003575 uncharacterized LOC102003575 NW_004955433 12281187 12287342 + 102003575 AGCD01031661;XR_001234717;XR_261586 MODEL 9023752 protein-coding LOC102023163 zinc finger protein 121-like NW_004955495 1204073 1216340 + 102023163 AGCD01061675;GBDF01156005;XM_005405568 XP_005405625 MODEL 39131562 protein-coding BPIFA1 BPI fold containing family A member 1 8727212 protein-coding Pdxdc1 pyridoxal dependent decarboxylase domain containing 1 ASSOCIATED WITH autistic disorder (ortholog); epilepsy (ortholog); renal cell carcinoma (ortholog); FOUND IN Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955442 187983 238586 - 102029673 AGCD01037414;AGCD01037415;AGCD01037416;GBBH01063606;GBDJ01382967;XM_005391842 XP_005391899 MODEL 9063163 protein-coding Pir pirin ENCODES a protein that exhibits metal ion binding (ortholog); quercetin 2,3-dioxygenase activity (ortholog); transcription coregulator activity (ortholog); INVOLVED IN monocyte differentiation (ortholog); myeloid cell differentiation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cholangiocarcinoma (ortholog); contact dermatitis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955519 2698207 2813201 + 102016304 AGCD01067938;AGCD01067939;AGCD01067940;AGCD01067941;AGCD01067942;GBCB01087098;XM_005409167;XM_013507011;XM_013507012;XM_013507013 XP_005409224;XP_013362465;XP_013362466;XP_013362467 MODEL 8711928 protein-coding Nap1l1 nucleosome assembly protein 1 like 1 ENCODES a protein that exhibits histone chaperone activity (ortholog); kinase binding (ortholog); INVOLVED IN cellular response to peptide hormone stimulus (ortholog); positive regulation of neural precursor cell proliferation (ortholog); positive regulation of neurogenesis (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH appendiceal neoplasm (ortholog); Colorectal Neoplasms (ortholog); hepatoblastoma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955405 15332696 15365181 - 102010541 AGCD01004943;AGCD01004944;GBCE01030847;XM_005374339;XM_005374340;XM_013517718;XM_013517723;XM_013517725 XP_005374396;XP_005374397;XP_013373172;XP_013373177;XP_013373179 MODEL 8787848 ncrna LOC102012458 uncharacterized LOC102012458 NW_004955429 17740928 17746251 - 102012458 AGCD01028865;GBDF01045489;XR_001234510 MODEL 8968284 protein-coding Elk1 ETS transcription factor ELK1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cellular response to gamma radiation (ortholog); cellular response to lipid (ortholog); cellular response to testosterone stimulus (ortholog); PARTICIPATES IN adenosine signaling pathway; hypoxia inducible factor pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); anxiety disorder (ortholog); autistic disorder (ortholog); FOUND IN axon terminus (ortholog); dendrite (ortholog); mitochondrial membrane (ortholog) NW_004955516 431081 444871 + 102015338 AGCD01067385;GBCE01187012;XM_005408941;XM_005408942 XP_005408998;XP_005408999 MODEL 8929632 protein-coding Prss27 serine protease 27 ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN plasma membrane (ortholog) NW_004955442 14636739 14656877 + 102019113 AGCD01037831;AGCD01037832;GBDF01127689;XM_005391411;XM_005391413;XM_005391415 XP_005391468;XP_005391470;XP_005391472 MODEL 150537101 protein-coding PCDHB14 protocadherin beta 14 8802791 ncrna LOC102006338 uncharacterized LOC102006338 NW_004955472 12747044 12750245 - 102006338 AGCD01053814;GBDJ01152684;XR_263575 MODEL 8965033 protein-coding Smpdl3a sphingomyelin phosphodiesterase acid like 3A ENCODES a protein that exhibits phosphoric diester hydrolase activity (ortholog); sphingomyelin phosphodiesterase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN negative regulation of cGAS/STING signaling pathway (ortholog); nucleoside triphosphate catabolic process (ortholog); sphingomyelin catabolic process (ortholog); ASSOCIATED WITH endometriosis (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog) NW_004955436 4655730 4663993 + 102027008 AGCD01033671;GBCE01075939;GBDJ01277043;XM_005389295 XP_005389352 MODEL 8770878 protein-coding Bpifa1 BPI fold containing family A member 1 INVOLVED IN killing of cells of another organism; positive regulation of acute inflammatory response; surfactant homeostasis; ASSOCIATED WITH Inflammation; fetal alcohol spectrum disorder (ortholog); glutathione synthetase deficiency (ortholog); FOUND IN extracellular space; extracellular region (ortholog); microvillus (ortholog) NW_004955422 28063077 28069939 - 102030434 AGCD01023343;FJ830605;GBBH01004310;NM_001282365;XM_013513811;XM_013513812;XM_013513813 ACZ02414;NP_001269294;XP_013369265;XP_013369266;XP_013369267 PROVISIONAL 8968487 protein-coding Slc35e4 solute carrier family 35 member E4 NW_004955455 4853632 4863617 + 102025539 AGCD01045696;GBCQ01129341;XM_005396278 XP_005396335 MODEL 8785101 pseudo LOC102010851 transmembrane protein 69 pseudogene NW_004955402 725985 734220 - 102010851 AGCD01000031 MODEL 8699634 ncrna LOC102006723 uncharacterized LOC102006723 NW_004955576 651455 652726 - 102006723 AGCD01075304;GBDF01286939;XR_265073 MODEL 39133402 snrna U2 U2 spliceosomal RNA 8765167 pseudo LOC102018855 60S ribosomal protein L12-like NW_004955435 12047641 12048394 + 102018855 AGCD01033133 MODEL 8883866 protein-coding Nap1l4 nucleosome assembly protein 1 like 4 ENCODES a protein that exhibits nucleosome binding (ortholog); INVOLVED IN nucleosome assembly (ortholog); ASSOCIATED WITH delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); neuronal cell body (ortholog) NW_004955422 14630858 14673171 - 102011997 AGCD01022862;AGCD01022863;GBDI01060155;XM_005384214;XM_013514102;XM_013514103;XM_013514104;XM_013514105;XM_013514106;XM_013514107 XP_005384271;XP_013369556;XP_013369557;XP_013369558;XP_013369559;XP_013369560;XP_013369561 MODEL 39131485 protein-coding PCDHB2 protocadherin beta 2 8983859 protein-coding Thap6 THAP domain containing 6 FOUND IN microtubule cytoskeleton (ortholog) NW_004955474 1481669 1491904 + 102008937 AGCD01054256;GBDF01081168;XM_005401316 XP_005401373 MODEL 9015758 protein-coding Rfxap regulatory factor X associated protein ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH MHC class II deficiency (ortholog); MHC CLASS II DEFICIENCY 1 (ortholog); MHC CLASS II DEFICIENCY 4 (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955431 9200006 9209588 - 102014933 AGCD01030160;AGCD01030161;GBCB01034736;GBDJ01029212;XM_013515899 XP_013371353 MODEL 8847126 ncrna LOC102009338 uncharacterized LOC102009338 NW_004955403 20129167 20220568 - 102009338 AGCD01002154;XR_259187 MODEL 9053136 pseudo LOC102021433 rRNA 2'-O-methyltransferase fibrillarin pseudogene NW_004955471 1185113 1185892 + 102021433 AGCD01052972 MODEL 8780842 protein-coding Orm1 orosomucoid 1 ENCODES a protein that exhibits amine binding (ortholog); small molecule binding (ortholog); INVOLVED IN acute inflammatory response to antigenic stimulus (ortholog); animal organ regeneration (ortholog); cellular response to glucocorticoid stimulus (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); Drug Hypersensitivity Syndrome (ortholog); Drug-Related Side Effects and Adverse Reactions (ortholog); FOUND IN extracellular space (ortholog) NW_004955419 13262119 13264986 - 102013830 AGCD01019999;GBDJ01021177;XM_005382643 XP_005382700 MODEL 8858971 protein-coding Sema3b semaphorin 3B ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955532 2083457 2093327 + 102027567 AGCD01070215;GBDJ01266007;GBDK01001855;XM_013507584;XM_013507585;XM_013507586 XP_013363038;XP_013363039;XP_013363040 MODEL 8719141 protein-coding LOC102009339 netrin receptor UNC5D-like NW_004955775 2794 4739 - 102009339 AGCD01078325;GBBH01098166;XM_005415109 XP_005415166 MODEL 15036842 trna Trnastop-cua transfer RNA amber suppressor (anticodon CUA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978848 8929422 protein-coding Rps6kc1 ribosomal protein S6 kinase C1 ASSOCIATED WITH Developmental Disabilities (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN early endosome (ortholog); endosome (ortholog); lysosome (ortholog) NW_004955406 4382931 4542926 - 102014207 AGCD01005687;AGCD01005688;AGCD01005689;AGCD01005690;GBDJ01420240;XM_005374724;XM_005374726;XM_005374727;XM_013520007;XM_013520009 XP_005374781;XP_005374783;XP_005374784;XP_013375461;XP_013375463 MODEL 8773479 ncrna LOC102011636 uncharacterized LOC102011636 NW_004955412 12761973 12776122 - 102011636 AGCD01012825;GBDF01277129;XR_001232873 MODEL 8878159 ncrna LOC102018470 uncharacterized LOC102018470 NW_004955456 7484949 7492235 + 102018470 AGCD01046416;AGCD01046417;GBDF01004071;XR_262887 MODEL 8759203 protein-coding Phf12 PHD finger protein 12 ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); transcription corepressor activity (ortholog); transcription corepressor binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); Sin3-type complex (ortholog) NW_004955481 4223803 4268640 + 102016708 AGCD01056932;GBDF01191922;XM_005402698;XM_013503419 XP_005402755;XP_013358873 MODEL 8838914 protein-coding LOC102009342 translation initiation factor IF-2-like NW_004955404 10719070 10720405 + 102009342 AGCD01003391;GBDF01220559;XM_005374052 XP_005374109 MODEL 39132835 snorna SNORA73 Small nucleolar RNA SNORA73 family 8837143 protein-coding Raly RALY heterogeneous nuclear ribonucleoprotein ENCODES a protein that exhibits identical protein binding (ortholog); RNA binding (ortholog); transcription coregulator activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nucleus (ortholog) NW_004955422 27269167 27360224 - 102025699 AGCD01023317;AGCD01023318;AGCD01023319;GBCQ01050320;XM_005384836;XM_005384837;XM_013514160;XM_013514161;XM_013514162 XP_005384893;XP_005384894;XP_013369614;XP_013369615;XP_013369616 MODEL 39133404 snrna U2 U2 spliceosomal RNA 8968574 protein-coding LOC102003578 telomerase protein component 1-like NW_004955433 39594 81672 + 102003578 AGCD01031301;XM_013516101 XP_013371555 MODEL 8702289 protein-coding Elk3 ETS transcription factor ELK3 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN angiogenesis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Breast Neoplasms (ortholog); congenital chylothorax (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955405 32526911 32559580 + 102009344 AGCD01005334;GBDJ01136162;XM_005374495;XM_013518514;XM_013518521;XR_259422 XP_005374552;XP_013373968;XP_013373975 MODEL 8838861 protein-coding Ptgis prostaglandin I2 synthase ENCODES a protein that exhibits heme binding (ortholog); prostaglandin-I synthase activity (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); cellular response to estradiol stimulus (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH Arterial Occlusive Diseases (ortholog); atherosclerosis (ortholog); autism spectrum disorder (ortholog); FOUND IN caveola (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955445 8624228 8663385 + 102005315 AGCD01039608;AGCD01039609;GBCE01000913;XM_005392329 XP_005392386 MODEL 8849307 protein-coding LOC102023164 uncharacterized LOC102023164 NW_004955423 5187581 5189464 - 102023164 AGCD01023556;XM_005385354 XP_005385411 MODEL 8926045 protein-coding Rbm48 RNA binding motif protein 48 ASSOCIATED WITH nephronophthisis (ortholog); peroxisome biogenesis disorder 1A (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955432 9461507 9498099 + 102004630 AGCD01030906;GBDF01196141;XM_005388020;XM_005388021;XM_013515938;XM_013515939;XR_261518 XP_005388077;XP_005388078;XP_013371392;XP_013371393 MODEL 8984666 protein-coding Slc22a20 solute carrier family 22 member 20 NW_004955422 19979250 20005115 - 102013181 AGCD01023052;AGCD01023053;AGCD01023054;AGCD01023055;AGCD01023056;AGCD01023057;GBDF01294741;XM_005384507 XP_005384564 MODEL 10246590 ncrna LOC106149787 uncharacterized LOC106149787 NW_004955453 4269849 4272453 + 106149787 AGCD01044686;GBCE01036940;XR_001236180 MODEL 8795035 protein-coding LOC102024133 melanoma-associated antigen 4-like NW_004955498 4509990 4510988 + 102024133 AGCD01063001;XM_005406484 XP_005406541 MODEL 8960755 protein-coding LOC102017327 elongator complex protein 1-like NW_004955414 17739374 17749693 - 102017327 AGCD01015249;AGCD01015250;GBDF01066305;XM_005380453 XP_005380510 MODEL 8911733 protein-coding Slc9a1 solute carrier family 9 member A1 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); identical protein binding (ortholog); phospholipid binding (ortholog); INVOLVED IN cardiac muscle cell contraction (ortholog); cardiac muscle cell differentiation (ortholog); cell differentiation (ortholog); PARTICIPATES IN endothelin signaling pathway; ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 19 (ortholog); Barrett's esophagus (ortholog); Brain Hypoxia-Ischemia (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cation-transporting ATPase complex (ortholog) NW_004955452 6409833 6467841 - 102028491 AGCD01044109;AGCD01044110;AGCD01044111;GBDJ01128349;XM_005394895 XP_005394952 MODEL 8846616 protein-coding Ldha lactate dehydrogenase A ENCODES a protein that exhibits identical protein binding (ortholog); kinase binding (ortholog); L-lactate dehydrogenase activity (ortholog); INVOLVED IN cellular response to phorbol 13-acetate 12-myristate (ortholog); glucose catabolic process to lactate via pyruvate (ortholog); lactate metabolic process (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); Animal Disease Models (ortholog); cardiomyopathy (ortholog); FOUND IN cytosol (ortholog); oxidoreductase complex (ortholog); sperm fibrous sheath (ortholog) NW_004955414 33087745 33100846 + 102019795 AGCD01015797;GBDF01008607;GBDJ01006869;XM_005380414 XP_005380471 MODEL 8705041 protein-coding Tomm5 translocase of outer mitochondrial membrane 5 PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; presequence pathway of mitochondrial protein import; ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ortholog); FOUND IN mitochondrial outer membrane translocase complex (ortholog); mitochondrion (ortholog) NW_004955419 28897328 28900289 + 102006133 AGCD01020479;GBCQ01035619;XM_005382876 XP_005382933 MODEL 8891171 protein-coding Bpifa3 BPI fold containing family A member 3 ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase (ortholog) NW_004955422 28076137 28087162 - 102003034 AGCD01023343;GBDF01046147;XM_005384851 XP_005384908 MODEL 8772465 protein-coding Vwa3b von Willebrand factor A domain containing 3B ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 22 (ortholog); Spinocerebellar Ataxias (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955470 4658088 4850277 + 102027837 AGCD01052734;AGCD01052735;AGCD01052736;AGCD01052737;AGCD01052738;AGCD01052739;GBDF01081475;XM_005400699;XM_005400700;XM_005400701;XM_005400703;XM_005400704;XM_005400705;XM_005400706;XM_005400707;XM_013522812 XP_005400756;XP_005400757;XP_005400758;XP_005400760;XP_005400761;XP_005400762;XP_005400763;XP_005400764;XP_013378266 MODEL 9018738 protein-coding Smpdl3b sphingomyelin phosphodiesterase acid like 3B ENCODES a protein that exhibits phosphoric diester hydrolase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN membrane lipid catabolic process (ortholog); negative regulation of inflammatory response (ortholog); negative regulation of toll-like receptor signaling pathway (ortholog); FOUND IN plasma membrane (ortholog) NW_004955452 7114746 7138924 + 102011498 AGCD01044133;AGCD01044134;AGCD01044135;AGCD01044136;GBDK01112309;XM_005394936;XM_013519538;XM_013519539 XP_005394993;XP_013374992;XP_013374993 MODEL 8827207 ncrna LOC102010852 uncharacterized LOC102010852 NW_004955450 14836986 14845311 - 102010852 AGCD01042764;GBDF01009911;XR_262554;XR_262555 MODEL 8938760 protein-coding LOC102008207 glutathione peroxidase 6 NW_004955465 13770938 13774725 - 102008207 AGCD01050623;GBBH01092321;GBDJ01389285;XM_013521797 XP_013377251 MODEL 39131490 protein-coding PCDHB4 protocadherin beta 4 8725341 protein-coding Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); tRNA-guanosine(34) queuine transglycosylase activity (ortholog); INVOLVED IN tRNA-guanine transglycosylation (ortholog); ASSOCIATED WITH familial hypercholesterolemia (ortholog); immunodeficiency 35 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955495 1851861 1857599 + 102008955 AGCD01061735;AGCD01061736;GBCE01028382;XM_005405610 XP_005405667 MODEL 39132839 snorna SNORA73 Small nucleolar RNA SNORA73 family 9033925 protein-coding Prim1 DNA primase subunit 1 ENCODES a protein that exhibits DNA-directed RNA polymerase activity (ortholog); magnesium ion binding (ortholog); ribonucleotide binding (ortholog); INVOLVED IN DNA replication initiation (ortholog); DNA replication, synthesis of primer (ortholog); ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); INTERSTITIAL LUNG AND LIVER DISEASE (ortholog); FOUND IN alpha DNA polymerase:primase complex (ortholog) NW_004955458 4265500 4294329 - 102014116 AGCD01047395;AGCD01047396;AGCD01047397;AGCD01047398;AGCD01047399;AGCD01047400;GBCB01132065;GBDI01357635;XM_013520988 XP_013376442 MODEL 8728685 protein-coding Spred2 sprouty related EVH1 domain containing 2 ENCODES a protein that exhibits protein kinase binding (ortholog); protein serine/threonine kinase inhibitor activity (ortholog); stem cell factor receptor binding (ortholog); INVOLVED IN negative regulation of epithelial to mesenchymal transition (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); negative regulation of intracellular signal transduction (ortholog); ASSOCIATED WITH achondroplasia (ortholog); Alzheimer's disease (ortholog); Noonan syndrome (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog) NW_004955424 19133568 19250118 + 102030213 AGCD01024808;AGCD01024809;AGCD01024810;GBDF01306128;XM_005385687;XM_013514715;XM_013514716 XP_005385744;XP_013370169;XP_013370170 MODEL 8996263 ncrna LOC102003579 uncharacterized LOC102003579 NW_004955522 3869752 3871054 + 102003579 AGCD01068402;GBDI01286574;XR_264629 MODEL 8889519 protein-coding Prss33 serine protease 33 ENCODES a protein that exhibits serine-type peptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog) NW_004955442 14521485 14524632 - 102016204 AGCD01037824;GBDK01223259;XM_005391403 XP_005391460 MODEL 8827158 ncrna LOC102006342 uncharacterized LOC102006342 NW_004955415 25402361 25405667 + 102006342 AGCD01016581;GBDF01097468;XR_260314 MODEL 8946047 protein-coding LOC102023166 cytochrome P450 26B1 ENCODES a protein that exhibits oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen (ortholog); retinoic acid 4-hydroxylase activity (ortholog); retinoic acid binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); cell fate determination (ortholog); cellular response to retinoic acid (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); congenital disorder of glycosylation type IIb (ortholog); Craniosynostosis Syndrome, Autosomal Recessive (ortholog); FOUND IN cytoplasm (ortholog) NW_004955424 13336189 13355368 + 102023166 AGCD01024631;AGCD01024632;GBBH01028900;GBDK01021875;XM_005385584 XP_005385641 MODEL 8914727 protein-coding Slc35f1 solute carrier family 35 member F1 ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); FOUND IN synaptic vesicle membrane (ortholog) NW_004955436 1096156 1312183 + 102008885 AGCD01033569;AGCD01033570;AGCD01033571;AGCD01033572;AGCD01033573;AGCD01033574;AGCD01033575;GBDF01183323;XM_005389123 XP_005389180 MODEL 8705149 protein-coding Rps6kl1 ribosomal protein S6 kinase like 1 ASSOCIATED WITH intellectual disability (ortholog) NW_004955523 645444 659004 + 102015659 AGCD01068474;GBDF01251184;XM_005409384;XM_005409385 XP_005409441;XP_005409442 MODEL 8858830 protein-coding LOC102018858 olfactory receptor 2A5-like NW_004955537 2612449 2613549 - 102018858 AGCD01070933;XM_005410627 XP_005410684 MODEL 8821152 pseudo LOC102010443 calnexin pseudogene NW_004955405 3150890 3152245 - 102010443 AGCD01004631 MODEL 8914971 protein-coding Prss35 serine protease 35 ASSOCIATED WITH Hepatomegaly (ortholog); immunodeficiency 23 (ortholog) NW_004955411 11163543 11164689 + 102015820 AGCD01011808;GBCQ01076266;XM_005377932 XP_005377989 MODEL 8704459 ncrna LOC102015418 uncharacterized LOC102015418 NW_004955424 21476497 21490967 + 102015418 AGCD01024898;GBDF01074469;XR_001234201;XR_261092 MODEL 9051794 protein-coding Phf13 PHD finger protein 13 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin-protein adaptor activity (ortholog); histone H3K9me2/3 reader activity (ortholog); INVOLVED IN chromosome segregation (ortholog); DNA damage response (ortholog); mitotic cell cycle (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleus (ortholog) NW_004955486 6018614 6025473 - 102006668 AGCD01059102;AGCD01059103;GBDF01049621;XM_005404074 XP_005404131 MODEL 8918779 protein-coding Pdxk pyridoxal kinase ENCODES a protein that exhibits phosphotransferase activity, alcohol group as acceptor (ortholog); pyridoxal binding (ortholog); pyridoxal kinase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); pyridoxal metabolic process (ortholog); pyridoxal phosphate biosynthetic process (ortholog); PARTICIPATES IN hypophosphatasia pathway; vitamin B6 metabolic pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog) NW_004955407 41482216 41494174 - 102005109 AGCD01007869;GBDJ01073643;GBDK01008497;XM_013505430 XP_013360884 MODEL 39133290 snrna U2 U2 spliceosomal RNA 8873963 pseudo LOC102021434 elongation factor 1-alpha 1 pseudogene NW_004955414 28395548 28396556 - 102021434 AGCD01015681;XR_260242 MODEL 39131477 protein-coding PCDHB7 protocadherin beta 7 8918918 protein-coding Elk4 ETS transcription factor ELK4 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955406 41325921 41333503 - 102010336 AGCD01006677;GBCE01022092;GBDF01222223;XM_013522928 XP_013378382 MODEL 8781926 protein-coding Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 INVOLVED IN ceramide metabolic process (ortholog); motor behavior (ortholog); myelination (ortholog); ASSOCIATED WITH immunodeficiency 31B (ortholog); Lynch syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955403 9100516 9113230 + 102005762 AGCD01001901;GBDF01162849;XM_005373314 XP_005373371 MODEL 8740820 protein-coding Sema3c semaphorin 3C ENCODES a protein that exhibits semaphorin receptor binding (ortholog); INVOLVED IN axon guidance (ortholog); blood vessel remodeling (ortholog); cardiac endothelial to mesenchymal transition (ortholog); ASSOCIATED WITH epilepsy (ortholog); High Myopia (ortholog); Persistent Truncus Arteriosus (ortholog); FOUND IN extracellular space (ortholog) NW_004955410 4795658 4953460 + 102004789 AGCD01010670;AGCD01010671;AGCD01010672;AGCD01010673;GBBH01102036;GBDF01276791;XM_005377197 XP_005377254 MODEL 10200104 ncrna LOC106149788 uncharacterized LOC106149788 NW_004955453 3312030 3333019 - 106149788 AGCD01044654;AGCD01044655;AGCD01044656;GBDK01417108;XR_001236181 MODEL 8711922 protein-coding LOC102010104 olfactory receptor 7G2-like NW_004955563 273849 274787 + 102010104 AGCD01074059;XM_005413199 XP_005413256 MODEL 8830918 pseudo LOC102024134 eukaryotic translation initiation factor 5 pseudogene NW_004955424 14792124 14793737 + 102024134 AGCD01024660 MODEL 8712812 ncrna LOC102017330 uncharacterized LOC102017330 NW_004955475 519946 550542 + 102017330 AGCD01054697;AGCD01054698;AGCD01054699;AGCD01054700;GBDK01432758;XR_001230750;XR_001230751;XR_001230752 MODEL 8962133 pseudo LOC102018472 olfactory receptor 9-like NW_004955458 3279883 3281726 + 102018472 AGCD01047291 MODEL 9012504 pseudo LOC102011641 uracil-DNA glycosylase pseudogene NW_004955413 26353261 26357509 - 102011641 AGCD01014435;XM_005379326;XM_005379327 MODEL 8937325 protein-coding Paip1 poly(A) binding protein interacting protein 1 ENCODES a protein that exhibits translation activator activity (ortholog); INVOLVED IN CRD-mediated mRNA stabilization (ortholog); negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (ortholog); positive regulation of cytoplasmic translation (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); mCRD-mediated mRNA stability complex (ortholog) NW_004955446 18801971 18830816 + 102030360 AGCD01040415;GBDF01043745;XM_005392735 XP_005392792 MODEL 9037925 protein-coding Nap1l5 nucleosome assembly protein 1 like 5 ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955474 11743565 11745311 + 102026213 AGCD01054634;GBCQ01097262;XM_005401453 XP_005401510 MODEL 8944367 protein-coding Pole2 DNA polymerase epsilon 2, accessory subunit INVOLVED IN DNA-templated DNA replication (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); primary ciliary dyskinesia (ortholog); FOUND IN epsilon DNA polymerase complex (ortholog); intracellular membrane-bounded organelle (ortholog); nuclear body (ortholog) NW_004955409 12983488 13014669 + 102029717 AGCD01009585;AGCD01009586;GBBH01205801;GBDF01081361;XM_013510466 XP_013365920 MODEL 8845911 protein-coding Slc9a2 solute carrier family 9 member A2 ENCODES a protein that exhibits sodium:proton antiporter activity (ortholog); INVOLVED IN epithelial cell differentiation (ortholog); protein localization (ortholog); regulation of intracellular pH (ortholog); ASSOCIATED WITH acute megakaryocytic leukemia (ortholog); aortic dissection (ortholog); Edema (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955470 8083737 8137372 + 102022379 AGCD01052819;GBCE01186945;XM_005400774 XP_005400831 MODEL 9039903 protein-coding Tomm6 translocase of outer mitochondrial membrane 6 PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; presequence pathway of mitochondrial protein import; ASSOCIATED WITH infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN mitochondrion (ortholog) NW_004955437 8183219 8184602 + 102015762 AGCD01034480;GBCQ01000051;XM_005389697 XP_005389754 MODEL 9047452 ncrna LOC102010853 uncharacterized LOC102010853 NW_004955403 10441158 10452838 + 102010853 AGCD01001921;XR_259168 MODEL 10204482 ncrna LOC106146959 uncharacterized LOC106146959 NW_004955507 2315831 2319762 - 106146959 AGCD01065585;GBCQ01043766;XR_001231635 MODEL 8970244 protein-coding LOC102012465 transmembrane emp24 domain-containing protein 11 NW_004955514 560181 584300 - 102012465 AGCD01067014;GBDJ01333431;XM_005408689 XP_005408746 MODEL 8746455 protein-coding Rps7 ribosomal protein S7 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); poly(U) RNA binding (ortholog); INVOLVED IN negative regulation of ubiquitin protein ligase activity (ortholog); negative regulation of ubiquitin-dependent protein catabolic process (ortholog); neural crest cell differentiation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); congenital hypoplastic anemia (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); cytosolic ribosome (ortholog) NW_004955487 3793168 3798007 - 102017669 AGCD01059294;GBCC01001033;XM_005404373 XP_005404430 MODEL 8858527 pseudo LOC102008208 spermine synthase pseudogene NW_004955412 21750895 21751995 - 102008208 AGCD01013025 MODEL 8792324 pseudo LOC102007837 28S ribosomal protein S31, mitochondrial pseudogene NW_004955402 45114932 45115802 - 102007837 AGCD01001130 MODEL 15036846 trna Trnastop-uca transfer RNA opal suppressor (anticodon UCA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978847 8823654 protein-coding Plekhm1 pleckstrin homology and RUN domain containing M1 INVOLVED IN autophagosome-lysosome fusion (ortholog); late endosome to lysosome transport (ortholog); lysosome localization (ortholog); ASSOCIATED WITH Autosomal Dominant Osteopetrosis 3 (ortholog); autosomal recessive osteopetrosis 1 (ortholog); autosomal recessive osteopetrosis 6 (ortholog); FOUND IN autolysosome (ortholog); intracellular membrane-bounded organelle (ortholog); lysosome (ortholog) NW_004955451 18043194 18079808 - 102027259 AGCD01043790;GBDI01179295;XM_005394577;XM_013519289;XM_013519290;XM_013519291;XM_013519292;XM_013519293;XM_013519294;XM_013519295;XM_013519296 XP_005394634;XP_013374743;XP_013374744;XP_013374745;XP_013374746;XP_013374747;XP_013374748;XP_013374749;XP_013374750 MODEL 8863519 protein-coding Slc22a23 solute carrier family 22 member 23 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955465 9840017 10006114 + 102024102 AGCD01050496;AGCD01050497;AGCD01050498;GBBH01214447;GBDF01050917;XM_005398990;XR_001236751;XR_001236752 XP_005399047 MODEL 9067964 ncrna LOC102005311 uncharacterized LOC102005311 NW_004955443 3210313 3216060 - 102005311 AGCD01038188;GBDF01281727;XR_262174 MODEL 8868606 ncrna LOC102006725 uncharacterized LOC102006725 NW_004955449 6040808 6089424 - 102006725 AGCD01041947;AGCD01041948;GBDF01079246;XR_001235824 MODEL 8782041 ncrna LOC102008209 uncharacterized LOC102008209 NW_004955467 9932033 9948996 + 102008209 AGCD01051536;AGCD01051537;GBBH01110880;XR_001236856 MODEL 9002998 protein-coding LOC102010105 leukocyte immunoglobulin-like receptor subfamily B member 4 NW_004955567 1451186 1471664 - 102010105 AGCD01074476;GBCE01047626;XM_013509228 XP_013364682 MODEL 9003642 protein-coding Pirt phosphoinositide interacting regulator of transient receptor potential channels ENCODES a protein that exhibits phosphatidylinositol bisphosphate binding (ortholog); phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); positive regulation of cation channel activity (ortholog); response to heat (ortholog); FOUND IN plasma membrane (ortholog) NW_004955467 6375992 6391770 + 102028844 AGCD01051413;GBDI01166080;XM_005399356 XP_005399413 MODEL 8894040 protein-coding Thap7 THAP domain containing 7 ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); general transcription initiation factor binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN chromatin organization (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); chromosome 22q11.2 microduplication syndrome (ortholog); FOUND IN chromatin (ortholog); intracellular membrane-bounded organelle (ortholog); nuclear membrane (ortholog) NW_004955442 19311307 19313779 + 102022025 AGCD01038052;GBDF01090370;XM_005391822 XP_005391879 MODEL 8935941 pseudo LOC102018475 60S ribosomal protein L21 pseudogene NW_004955408 8362648 8363163 + 102018475 AGCD01008216 MODEL 9068054 protein-coding Smpx small muscle protein X-linked ASSOCIATED WITH autistic disorder (ortholog); Distal Myopathy 7 (ortholog); genetic disease (ortholog); FOUND IN contractile muscle fiber (ortholog); costamere (ortholog); cytoplasm (ortholog) NW_004955509 2043854 2185294 - 102010078 AGCD01065988;AGCD01065989;AGCD01065990;AGCD01065991;AGCD01065992;GBCB01004982;XM_005407820;XM_005407822;XM_005407823;XM_013506295 XP_005407877;XP_005407879;XP_005407880;XP_013361749 MODEL 8823551 protein-coding Rgcc regulator of cell cycle ENCODES a protein that exhibits protein kinase activator activity (ortholog); protein kinase binding (ortholog); protein kinase regulator activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); complement receptor mediated signaling pathway (ortholog); fibroblast activation (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Myocardial Ischemia (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nucleolus (ortholog) NW_004955518 4788857 4800273 - 102024839 AGCD01067838;GBBH01089561;XM_005409116 XP_005409173 MODEL 8920367 protein-coding Ptgr1 prostaglandin reductase 1 ENCODES a protein that exhibits 13-lipoxin reductase activity (ortholog); 15-oxoprostaglandin 13-oxidase [NAD(P)+] activity (ortholog); 2-alkenal reductase (NADPH) activity (ortholog); INVOLVED IN alkene metabolic process (ortholog); leukotriene B4 metabolic process (ortholog); lipoxin A4 metabolic process (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Experimental Liver Neoplasms (ortholog); hypertension (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955419 15708456 15738774 + 102009949 AGCD01020087;AGCD01020088;AGCD01020089;GBDK01361003;XM_005382721;XM_005382722 XP_005382778;XP_005382779 MODEL 9014131 protein-coding Ralyl RALY RNA binding protein like ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955417 2123050 2747906 + 102025909 AGCD01017870;AGCD01017871;AGCD01017872;AGCD01017873;AGCD01017874;AGCD01017875;AGCD01017876;AGCD01017877;AGCD01017878;AGCD01017879;AGCD01017880;AGCD01017881;AGCD01017882;GBDI01355838;XM_005381724;XM_005381725;XM_005381727;XM_013512855;XM_013512856 XP_005381781;XP_005381782;XP_005381784;XP_013368309;XP_013368310 MODEL 39132842 snorna SNORA73 Small nucleolar RNA SNORA73 family 9022295 protein-coding Prss36 serine protease 36 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); dilated cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog) NW_004955493 7979080 7985028 - 102020813 AGCD01061245;AGCD01061246;AGCD01061247;GBBH01102280;GBBH01102285;XM_013504884 XP_013360338 MODEL 8861892 protein-coding Rbm5 RNA binding motif protein 5 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN positive regulation of apoptotic process (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); spliceosomal complex assembly (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955532 1929540 1957297 + 102024380 AGCD01070208;GBBH01063051;GBDF01081334;XM_013507632 XP_013363086 MODEL 10261081 pseudo LOC106146960 microfibrillar-associated protein 1 pseudogene NW_004955407 42849087 42852603 + 106146960 AGCD01007897 MODEL 8756365 protein-coding Ldhal6b lactate dehydrogenase A like 6B INVOLVED IN lactate metabolic process (ortholog); PARTICIPATES IN malonic aciduria pathway; methylmalonic aciduria, cobalamin-related pathway; propanoate metabolic pathway; ASSOCIATED WITH Bloom syndrome (ortholog); Breast Neoplasms (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog) NW_004955439 4954208 4956660 + 102017061 AGCD01035722;GBDF01048272;XM_005390536 XP_005390593 MODEL 9024008 pseudo LOC102009346 ribosome biogenesis protein BRX1 homolog pseudogene NW_004955453 6480308 6481349 + 102009346 AGCD01044720 MODEL 8892991 protein-coding Pdxp pyridoxal phosphatase ENCODES a protein that exhibits growth factor binding (ortholog); heat shock protein binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN actin rod assembly (ortholog); cellular response to ATP (ortholog); dephosphorylation (ortholog); PARTICIPATES IN hypophosphatasia pathway; vitamin B6 metabolic pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); myoclonic dystonia 26 (ortholog); FOUND IN actin cytoskeleton (ortholog); cell-cell junction (ortholog); cleavage furrow (ortholog) NW_004955413 24055900 24063902 + 102008839 AGCD01014346;AGCD01014347;GBDK01027422;XM_005379654 XP_005379711 MODEL 8970278 protein-coding Tril TLR4 interactor with leucine rich repeats ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); INVOLVED IN regulation of cytokine production involved in immune response (ortholog); toll-like receptor 4 signaling pathway (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN lipopolysaccharide receptor complex (ortholog) NW_004955410 30497953 30503444 - 102015485 AGCD01011308;GBDK01079499;XM_005377483 XP_005377540 MODEL 8717328 protein-coding Spred3 sprouty related EVH1 domain containing 3 ENCODES a protein that exhibits stem cell factor receptor binding (ortholog); INVOLVED IN negative regulation of epithelial to mesenchymal transition (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); negative regulation of lens fiber cell differentiation (ortholog); FOUND IN plasma membrane (ortholog) NW_004955468 1030964 1039495 - 102014764 AGCD01051748;GBDF01220614;XM_005399849;XM_005399850;XM_005399851;XM_005399852;XM_013522465;XM_013522466;XM_013522467 XP_005399906;XP_005399907;XP_005399908;XP_005399909;XP_013377919;XP_013377920;XP_013377921 MODEL 10245498 ncrna LOC106149789 uncharacterized LOC106149789 NW_004955453 942778 947280 - 106149789 AGCD01044602;GBDF01028043;XR_001236183 MODEL 8751717 protein-coding LOC102011232 liver carboxylesterase 1-like NW_004955433 13570134 13598314 - 102011232 AGCD01031695;AGCD01031696;GBCQ01034315;XM_005388340;XM_005388341 XP_005388397;XP_005388398 MODEL 9007688 protein-coding LOC102006343 cystatin-C-like NW_004955415 30580664 30583924 - 102006343 AGCD01016666;GBDF01051588;XM_005380974;XR_001233254 XP_005381031 MODEL 8986127 pseudo LOC102011642 ras-related protein Rab-5A pseudogene NW_004955468 5230636 5231184 + 102011642 AGCD01051959 MODEL 8880931 protein-coding Bpifb1 BPI fold containing family B member 1 INVOLVED IN innate immune response in mucosa (ortholog); negative regulation of toll-like receptor 4 signaling pathway (ortholog); ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase (ortholog); FOUND IN extracellular region (ortholog) NW_004955422 27955298 27976051 - 102029304 AGCD01023340;GBDI01017648;XM_005384845;XM_005384846 XP_005384902;XP_005384903 MODEL 9019716 protein-coding Slc35f2 solute carrier family 35 member F2 ASSOCIATED WITH ataxia telangiectasia (ortholog); chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog) NW_004955412 10111134 10156575 - 102003744 AGCD01012757;AGCD01012758;GBCQ01037767;XM_013511242 XP_013366696 MODEL 8744866 protein-coding Slc22a3 solute carrier family 22 member 3 ENCODES a protein that exhibits dopamine:sodium symporter activity (ortholog); monoamine transmembrane transporter activity (ortholog); neurotransmitter transmembrane transporter activity (ortholog); INVOLVED IN cellular detoxification (ortholog); dopamine transport (ortholog); dopamine uptake (ortholog); PARTICIPATES IN lamivudine pharmacokinetics pathway; metformin pharmacokinetics pathway; ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); Coxsackievirus Infections (ortholog); Kidney Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); endomembrane system (ortholog) NW_004955439 20367324 20476891 - 102012365 AGCD01036111;AGCD01036112;AGCD01036113;AGCD01036114;GBBH01205688;GBDJ01352885;XM_005390702 XP_005390759 MODEL 8766864 pseudo LOC102008213 RWD domain-containing protein 1 pseudogene NW_004955472 2276716 2278452 - 102008213 AGCD01053451 MODEL 8948074 ncrna LOC102010445 uncharacterized LOC102010445 NW_004955406 13995073 13998877 - 102010445 AGCD01005956;GBDJ01024864;XR_001236437 MODEL 8951641 protein-coding Pole3 DNA polymerase epsilon 3, accessory subunit INVOLVED IN chromatin remodeling (ortholog); DNA-templated DNA replication (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; nucleotide excision repair pathway; RNA polymerase II transcription initiation pathway; FOUND IN ATAC complex (ortholog); epsilon DNA polymerase complex (ortholog); pericentric heterochromatin (ortholog) NW_004955419 14086940 14089906 + 102019174 AGCD01020011;AGCD01020012;GBBH01117842;GBDF01085263;XM_005382662 XP_005382719 MODEL 39133299 snrna U2 U2 spliceosomal RNA 8811905 protein-coding Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); tRNA binding (ortholog); INVOLVED IN tRNA-guanine transglycosylation (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955427 14139024 14169402 + 102008752 AGCD01027267;GBDF01111812;XM_005386411 XP_005386468 MODEL 8883496 protein-coding Prim2 DNA primase subunit 2 ENCODES a protein that exhibits 4 iron, 4 sulfur cluster binding (ortholog); DNA-directed RNA polymerase activity (ortholog); DNA/RNA hybrid binding (ortholog); INVOLVED IN DNA replication initiation (ortholog); DNA replication, synthesis of primer (ortholog); FOUND IN alpha DNA polymerase:primase complex (ortholog) NW_004955502 2642328 2898919 - 102025706 AGCD01064302;AGCD01064303;AGCD01064304;AGCD01064305;GBDJ01401975;XM_005406880;XM_005406881;XM_013505840;XM_013505841 XP_005406937;XP_005406938;XP_013361294;XP_013361295 MODEL 8726943 pseudo LOC102021437 E3 SUMO-protein ligase PIAS2 pseudogene NW_004955415 14409004 14410892 - 102021437 AGCD01016298 MODEL 8915665 protein-coding Slc9a3 solute carrier family 9 member A3 ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN circadian rhythm (ortholog); receptor-mediated endocytosis (ortholog); regulation of intracellular pH (ortholog); PARTICIPATES IN endothelin signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant dyskeratosis congenita 2 (ortholog); congenital secretory sodium diarrhea 8 (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog) NW_004955504 226192 260632 - 102021372 AGCD01064816;GBCQ01005944;XM_005407000;XM_005407001 XP_005407057;XP_005407058 MODEL 8913787 protein-coding Phf14 PHD finger protein 14 ENCODES a protein that exhibits histone binding (ortholog); INVOLVED IN germinal center B cell differentiation (ortholog); lung alveolus development (ortholog); mesenchymal cell proliferation (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955432 17535222 17807106 + 102030462 AGCD01031127;AGCD01031128;AGCD01031129;GBCQ01064031;XM_013515963;XM_013515964;XM_013515965;XM_013515966;XM_013515967;XM_013515968;XM_013515969;XM_013515970;XM_013515971;XM_013515972;XM_013515973;XM_013515974;XM_013515975;XM_013515976;XM_013515977;XM_013515978;XM_013515979;XM_013515980;XR_001234651 XP_013371417;XP_013371418;XP_013371419;XP_013371420;XP_013371421;XP_013371422;XP_013371423;XP_013371424;XP_013371425;XP_013371426;XP_013371427;XP_013371428;XP_013371429;XP_013371430;XP_013371431;XP_013371432;XP_013371433;XP_013371434 MODEL 8734111 protein-coding Rps8 ribosomal protein S8 ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN cytosol (ortholog); cytosolic ribosome (ortholog); cytosolic small ribosomal subunit (ortholog) NW_004955464 13443580 13445391 - 102006993 AGCD01050279;AGCD01050280;GBCB01003744;GBDI01000130;XM_013521630 XP_013377084 MODEL 8854107 protein-coding Rgl1 ral guanine nucleotide dissociation stimulator like 1 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955406 22419137 22670537 + 102027940 AGCD01006158;AGCD01006159;AGCD01006160;GBDF01090295;XM_005375043;XM_005375044;XM_005375045;XM_005375046 XP_005375100;XP_005375101;XP_005375102;XP_005375103 MODEL 9017785 protein-coding Ormdl2 ORMDL sphingolipid biosynthesis regulator 2 INVOLVED IN ceramide metabolic process (ortholog); negative regulation of ceramide biosynthetic process (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955458 3451434 3454259 + 102021632 AGCD01047302;GBDF01117194;XM_005397260;XM_005397261 XP_005397317;XP_005397318 MODEL 8792736 protein-coding Ell elongation factor for RNA polymerase II ENCODES a protein that exhibits phosphatase binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); positive regulation of transcription by RNA polymerase III (ortholog); positive regulation of transcription elongation by RNA polymerase II (ortholog); PARTICIPATES IN aldosterone signaling pathway; RNA polymerase II transcription elongation pathway; ASSOCIATED WITH Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); FOUND IN Cajal body (ortholog); cytosol (ortholog); euchromatin (ortholog) NW_004955524 3054296 3094125 + 102023388 AGCD01068853;AGCD01068854;GBDF01009023;XM_005409573 XP_005409630 MODEL 8869956 ncrna LOC102024140 uncharacterized LOC102024140 NW_004955504 398960 407704 + 102024140 AGCD01064819;GBDK01412395;XR_001231548;XR_001231549;XR_264269 MODEL 8999801 protein-coding LOC102023167 melanoma-associated antigen 10-like NW_004955498 3160903 3189402 + 102023167 AGCD01062881;AGCD01062882;AGCD01062883;GBDF01220829;XM_005406402;XM_005406403 XP_005406459;XP_005406460 MODEL 8737393 pseudo LOC102017333 lymphokine-activated killer T-cell-originated protein kinase pseudogene NW_004955475 5548381 5554749 - 102017333 AGCD01054920;AGCD01054921 MODEL 8861340 pseudo LOC102005312 uncharacterized LOC102005312 NW_004955443 13092892 13167982 + 102005312 AGCD01038462;AGCD01038463;AGCD01038464 MODEL 8859033 protein-coding Sema3d semaphorin 3D ASSOCIATED WITH CHARGE syndrome (ortholog); epilepsy (ortholog); Hirschsprung Disease 1 (ortholog) NW_004955410 1356787 1510394 + 102029055 AGCD01010614;AGCD01010615;AGCD01010616;GBBH01117384;GBDF01039923;XM_005377189 XP_005377246 MODEL 8995948 protein-coding Ldhb lactate dehydrogenase B ENCODES a protein that exhibits identical protein binding (ortholog); kinase binding (ortholog); L-lactate dehydrogenase activity (ortholog); INVOLVED IN lactate metabolic process (ortholog); NAD metabolic process (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Breast Neoplasms (ortholog); dilated cardiomyopathy 1O (ortholog); FOUND IN cytosol (ortholog); membrane raft (ortholog); mitochondrial inner membrane (ortholog) NW_004955413 17264337 17283530 - 102018706 AGCD01014141;GBCB01007481;GBDJ01002173;XM_005379063 XP_005379120 MODEL 8823193 protein-coding LOC102006726 saoe class I histocompatibility antigen, C alpha chain-like NW_004955583 1134089 1136685 - 102006726 AGCD01075893;GBCC01000509;GBDK01001536;XM_013509825 XP_013365279 MODEL 8792629 protein-coding Paip2 poly(A) binding protein interacting protein 2 ENCODES a protein that exhibits mRNA binding (ortholog); translation repressor activity (ortholog); INVOLVED IN memory (ortholog); negative regulation of translation (ortholog); negative regulation of translational initiation (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); Colorectal Neoplasms (ortholog); familial adenomatous polyposis 1 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955418 1189822 1208559 - 102021556 AGCD01018712;GBDF01005070;XM_005382081 XP_005382138 MODEL 8979168 protein-coding Tomm7 translocase of outer mitochondrial membrane 7 INVOLVED IN positive regulation of protein targeting to mitochondrion (ortholog); positive regulation of type 2 mitophagy (ortholog); regulation of protein stability (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; mitochondrial autophagy pathway; ASSOCIATED WITH GARG-MISHRA PROGEROID SYNDROME (ortholog); hypomyelinating leukodystrophy 5 (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN mitochondrial outer membrane translocase complex (ortholog); mitochondrion (ortholog) NW_004955410 25157860 25166898 - 102009473 AGCD01011144;GBCB01006439;XM_005377383 XP_005377440 MODEL 8838941 protein-coding LOC102010107 protein bunched, class 1/class 3/D/E isoforms-like NW_004955573 470280 471584 + 102010107 AGCD01074980;AGCD01074981;GBDF01228221;XM_005413775 XP_005413832 MODEL 8979984 protein-coding LOC102015419 spermatogenesis-associated protein 7 homolog NW_004955498 671164 805118 + 102015419 AGCD01062724;AGCD01062725;AGCD01062726;AGCD01062727;AGCD01062728;AGCD01062729;XM_013505520 XP_013360974 MODEL 8959113 ncrna LOC102003582 uncharacterized LOC102003582 NW_004955526 1543834 1552568 + 102003582 AGCD01069274;GBDF01182742;XR_264657 MODEL 8877178 protein-coding Napa NSF attachment protein alpha ENCODES a protein that exhibits protein-containing complex binding (ortholog); SNARE binding (ortholog); syntaxin binding (ortholog); INVOLVED IN apical protein localization (ortholog); brain development (ortholog); intracellular protein transport (ortholog); FOUND IN glutamatergic synapse (ortholog); neuromuscular junction (ortholog); postsynapse (ortholog) NW_004955574 1330911 1353392 - 102012814 AGCD01075174;GBCB01007521;XM_005413880;XM_005413881;XM_013509542;XM_013509543 XP_005413937;XP_005413938;XP_013364996;XP_013364997 MODEL 8785102 pseudo LOC102012468 ribose-phosphate pyrophosphokinase 1-like NW_004955519 2455691 2458425 + 102012468 AGCD01067931;AGCD01067932 MODEL 8893210 protein-coding Pced1a PC-esterase domain containing 1A ASSOCIATED WITH genetic disease (ortholog); Huntington's disease-like 1 (ortholog); pantothenate kinase-associated neurodegeneration (ortholog) NW_004955415 13786243 13792914 - 102019497 AGCD01016269;GBDK01324208;XM_005380768;XM_013512309;XM_013512311 XP_005380825;XP_013367763;XP_013367765 MODEL 8837929 protein-coding Ramac RNA guanine-7 methyltransferase activating subunit ENCODES a protein that exhibits enzyme activator activity (ortholog); molecular function activator activity (ortholog); RNA binding (ortholog); INVOLVED IN 7-methylguanosine mRNA capping (ortholog); PARTICIPATES IN 5'-end pre-mRNA capping pathway; ASSOCIATED WITH amenorrhea (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN mRNA cap methyltransferase RNMT:RAMAC complex (ortholog); mRNA capping enzyme complex (ortholog); nucleus (ortholog) NW_004955416 13686997 13691792 - 102004382 AGCD01017232;GBCE01097705;XM_005381468;XM_013512498 XP_005381525;XP_013367952 MODEL 9023768 protein-coding Ldhd lactate dehydrogenase D INVOLVED IN lactate catabolic process (ortholog); PARTICIPATES IN glyoxalase metabolic pathway; Leigh disease pathway; primary hyperoxaluria type 2 pathway; ASSOCIATED WITH Lactic Aciduria due to D-Lactic Acid (ortholog); macular corneal dystrophy (ortholog); paraplegia (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955484 2461545 2466702 + 102023475 AGCD01058116;GBCE01153230;XM_005403452 XP_005403509 MODEL 15036845 trna Trnastop-uua transfer RNA ochre suppressor(anticodon UUA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978849 39132936 snorna SNORD98 small nucleolar RNA, C/D box 98 9045456 protein-coding Rbm6 RNA binding motif protein 6 ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN nucleus (ortholog) NW_004955532 1811794 1914551 + 102023074 AGCD01070200;AGCD01070201;AGCD01070202;AGCD01070203;AGCD01070204;AGCD01070205;GBDF01050658;XM_005410236;XM_013507616;XM_013507617 XP_005410293;XP_013363070;XP_013363071 MODEL 8776302 protein-coding Plekhm2 pleckstrin homology and RUN domain containing M2 ENCODES a protein that exhibits kinesin binding (ortholog); INVOLVED IN Golgi organization (ortholog); lysosome localization (ortholog); natural killer cell mediated cytotoxicity (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); dilated cardiomyopathy (ortholog); Hereditary Pancreatitis (ortholog); FOUND IN endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955527 2438595 2453120 - 102010404 AGCD01069436;GBCE01096844;GBDJ01072717;XM_013507397 XP_013362851 MODEL 9011044 protein-coding LOC102010856 uncharacterized LOC102010856 NW_004955650 98638 101158 + 102010856 AGCD01077799;GBDJ01149179;XM_005415052;XR_001232591 XP_005415109 MODEL 8891427 protein-coding Rps9 ribosomal protein S9 ENCODES a protein that exhibits 5.8S rRNA binding (ortholog); structural constituent of ribosome (ortholog); translation regulator activity (ortholog); INVOLVED IN positive regulation of cell population proliferation (ortholog); ribosomal small subunit biogenesis (ortholog); translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Liver Failure (ortholog); FOUND IN cytoplasm (ortholog); cytosolic ribosome (ortholog); cytosolic small ribosomal subunit (ortholog) NW_004955604 73593 76414 - 102011384 AGCD01076861;GBDJ01021129;XM_005414849 XP_005414906 MODEL 9053266 protein-coding Spring1 SREBF pathway regulator in golgi 1 INVOLVED IN positive regulation of SREBP signaling pathway (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955455 14331512 14349252 + 102024763 AGCD01046089;GBDJ01275881;XM_005396552 XP_005396609 MODEL 8819606 protein-coding LOC102011234 40S ribosomal protein S17-like NW_004955523 399503 400042 - 102011234 AGCD01068454;GBDJ01263809;XM_013507145 XP_013362599 MODEL 8788450 protein-coding Trim10 tripartite motif containing 10 INVOLVED IN erythrocyte differentiation (ortholog); host-mediated suppression of symbiont invasion (ortholog); innate immune response (ortholog); ASSOCIATED WITH irritant dermatitis (ortholog); megacolon (ortholog); FOUND IN cytoplasm (ortholog) NW_004955583 268856 277079 - 102012818 AGCD01075808;GBBH01166081;XM_005414300 XP_005414357 MODEL 9044410 protein-coding Sms spermine synthase ENCODES a protein that exhibits spermine synthase activity (ortholog); INVOLVED IN spermine biosynthetic process (ortholog); spermine metabolic process (ortholog); PARTICIPATES IN methionine cycle/metabolic pathway; polyamine metabolic pathway; spermidine metabolic pathway; ASSOCIATED WITH anxiety disorder (ortholog); autistic disorder (ortholog); Developmental Disease (ortholog) NW_004955509 2277501 2328612 + 102011787 AGCD01065995;AGCD01065996;AGCD01065997;GBDF01088292;XM_005407826 XP_005407883 MODEL 8755541 protein-coding Pisd phosphatidylserine decarboxylase ENCODES a protein that exhibits phosphatidylserine decarboxylase activity (ortholog); INVOLVED IN lipid droplet formation (ortholog); mitochondrial protein catabolic process (ortholog); phosphatidylethanolamine biosynthetic process (ortholog); PARTICIPATES IN forkhead class A signaling pathway; glycerophospholipid metabolic pathway; ASSOCIATED WITH Childhood Schizophrenia (ortholog); genetic disease (ortholog); Liberfarb Syndrome (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); lipid droplet (ortholog) NW_004955455 5744816 5789408 - 102011278 AGCD01045751;AGCD01045752;GBDI01217037;XM_005396318;XM_005396319;XM_005396321;XM_005396322;XM_013520418;XM_013520419;XM_013520420 XP_005396375;XP_005396376;XP_005396378;XP_005396379;XP_013375872;XP_013375873;XP_013375874 MODEL 8951256 protein-coding LOC102007838 vomeronasal type-1 receptor 2-like NW_004955603 405739 406635 + 102007838 AGCD01076843;XM_005414838 XP_005414895 MODEL 8857193 protein-coding Ptgr2 prostaglandin reductase 2 ENCODES a protein that exhibits 15-oxoprostaglandin 13-oxidase [NAD(P)+] activity (ortholog); zinc ion binding (ortholog); INVOLVED IN prostaglandin metabolic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); primary ciliary dyskinesia 16 (ortholog) NW_004955523 1519767 1549998 - 102024499 AGCD01068523;AGCD01068524;AGCD01068525;GBCQ01000257;XM_005409413 XP_005409470 MODEL 10319493 ncrna LOC106146961 uncharacterized LOC106146961 NW_004955507 4042176 4058788 + 106146961 AGCD01065640;GBDF01235397;XR_001231637 MODEL 8815095 protein-coding Prss37 serine protease 37 INVOLVED IN binding of sperm to zona pellucida (ortholog); germ cell migration (ortholog); positive regulation of acrosome reaction (ortholog); ASSOCIATED WITH Hereditary Pancreatitis (ortholog); RASopathy (ortholog); Sengers syndrome (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955494 1742104 1747310 + 102013098 AGCD01061422;GBDF01008323;XM_005405400;XM_005405401 XP_005405457;XP_005405458 MODEL 8787567 protein-coding Vwa5a von Willebrand factor A domain containing 5A ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955412 24850301 24874498 + 102003105 AGCD01013130;GBBH01115484;XM_005378408;XM_005378409 XP_005378465;XP_005378466 MODEL 8842654 protein-coding LOC102021446 olfactory receptor 6F1 NW_004955418 30343310 30344236 - 102021446 AGCD01019514;XM_005382336 XP_005382393 MODEL 8714450 trna Trnat-agu transfer RNA threonine (anticodon AGU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978810 AGCD01035275;AGCD01037196;AGCD01050588;AGCD01050597;AGCD01051466;AGCD01051472;AGCD01051842;AGCD01057606;AGCD01071886 MODEL 9038631 pseudo LOC102024142 TATA box-binding protein-associated factor RNA polymerase I subunit D pseudogene NW_004955505 4170938 4174564 - 102024142 AGCD01065092 MODEL 8840820 protein-coding Pced1b PC-esterase domain containing 1B NW_004955500 6247689 6280542 + 102014689 AGCD01063874;AGCD01063875;GBBH01176407;XM_005406607;XM_013505706;XM_013505707;XM_013505708;XM_013505709;XM_013505710;XM_013505711;XM_013505712;XM_013505713 XP_005406664;XP_013361160;XP_013361161;XP_013361162;XP_013361163;XP_013361164;XP_013361165;XP_013361166;XP_013361167 MODEL 9052203 ncrna LOC102018476 uncharacterized LOC102018476 NW_004955458 9702392 9709705 - 102018476 AGCD01047660;GBDI01338963;XR_001236457 MODEL 9046740 protein-coding Ell2 elongation factor for RNA polymerase II 2 INVOLVED IN snRNA transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH COVID-19 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN nucleoplasm (ortholog); transcription elongation factor complex (ortholog) NW_004955418 16615340 16686632 + 102013295 AGCD01019127;AGCD01019128;GBDF01004410;XM_005382233 XP_005382290 MODEL 9050733 protein-coding Phf19 PHD finger protein 19 ENCODES a protein that exhibits histone H3K36me3 reader activity (ortholog); methylated histone binding (ortholog); INVOLVED IN epigenetic regulation of gene expression (ortholog); negative regulation of gene expression, epigenetic (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN ESC/E(Z) complex (ortholog) NW_004955419 7160249 7179323 + 102024678 AGCD01019875;GBCB01002322;GBDI01260665;XM_005382592 XP_005382649 MODEL 8967189 protein-coding Rgl2 ral guanine nucleotide dissociation stimulator like 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN negative regulation of cardiac muscle cell apoptotic process (ortholog); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); regulation of Ral protein signal transduction (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); MHC class I deficiency (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog) NW_004955437 1851005 1857567 - 102003279 AGCD01034239;GBBH01030712;XM_005389484 XP_005389541 MODEL 8737858 protein-coding Slc35f3 solute carrier family 35 member F3 INVOLVED IN thiamine transport (ortholog); ASSOCIATED WITH common variable immunodeficiency 14 (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955492 5349445 5661186 - 102028980 AGCD01060744;AGCD01060745;AGCD01060746;AGCD01060747;AGCD01060748;AGCD01060749;AGCD01060750;GBBH01193275;XM_005404959;XM_005404960 XP_005405016;XP_005405017 MODEL 8728765 ncrna LOC102006728 uncharacterized LOC102006728 NW_004955449 14135156 14158149 - 102006728 AGCD01042159;AGCD01042160;GBDF01209448;XR_262503 MODEL 39132942 snorna SNORA74 Small nucleolar RNA SNORA74 9036198 protein-coding LOC102017334 ADP-ribosylation factor 2-like NW_004955478 10548443 10575590 - 102017334 AGCD01056134;AGCD01056135;AGCD01056136;AGCD01056137;GBDF01074230;XM_013503250;XM_013503251 XP_013358704;XP_013358705 MODEL 9048668 pseudo LOC102015420 pescadillo homolog pseudogene NW_004955424 12835886 12840197 - 102015420 AGCD01024620 MODEL 8827187 protein-coding LOC102008214 putative olfactory receptor 52P1 NW_004955414 21691721 21692701 + 102008214 AGCD01015427;XM_005380500 XP_005380557 MODEL 39133110 snrna U2 U2 spliceosomal RNA 9047719 protein-coding Pole4 DNA polymerase epsilon 4, accessory subunit INVOLVED IN DNA-templated DNA replication (ortholog); PARTICIPATES IN nucleotide excision repair pathway; FOUND IN ATAC complex (ortholog); epsilon DNA polymerase complex (ortholog); nucleoplasm (ortholog) NW_004955424 10839639 10844985 - 102018742 AGCD01024531;GBDI01113587;XM_005385473 XP_005385530 MODEL 8753417 protein-coding LOC102009347 translation initiation factor IF-2-like NW_004955406 23881198 23887173 - 102009347 AGCD01006186;GBCQ01162563;XM_005375074;XM_013521722 XP_005375131;XP_013377176 MODEL 8794561 protein-coding Napb NSF attachment protein beta ENCODES a protein that exhibits SNARE binding (ortholog); syntaxin binding (ortholog); INVOLVED IN protein-containing complex disassembly (ortholog); regulation of ATP-dependent activity (ortholog); regulation of receptor internalization (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); developmental and epileptic encephalopathy 1 (ortholog); developmental and epileptic encephalopathy 107 (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog); presynapse (ortholog) NW_004955415 30392692 30427773 - 102004274 AGCD01016661;AGCD01016662;AGCD01016663;AGCD01016664;GBCE01013401;XM_005380968 XP_005381025 MODEL 8721822 protein-coding Trim11 tripartite motif containing 11 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein-macromolecule adaptor activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN host-mediated suppression of symbiont invasion (ortholog); innate immune response (ortholog); negative regulation of AIM2 inflammasome complex assembly (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955581 114750 123410 + 102013126 AGCD01075657;GBDF01080297;XM_005414233;XM_005414234 XP_005414290;XP_005414291 MODEL 9030597 protein-coding Ramp1 receptor activity modifying protein 1 ENCODES a protein that exhibits amylin receptor activity (ortholog); calcitonin gene-related peptide binding (ortholog); calcitonin gene-related peptide receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); amylin receptor 1 signaling pathway (ortholog); amylin receptor signaling pathway (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN cell surface (ortholog); CGRP receptor complex (ortholog); extracellular space (ortholog) NW_004955542 2530349 2564072 - 102016423 AGCD01071524;AGCD01071525;GBBH01000037;GBDF01085513;XM_013508020 XP_013363474 MODEL 8902238 protein-coding LOC102006347 syncytin-1-like NW_004955417 31573854 31588270 + 102006347 AGCD01018657;GBDF01112288;GBDK01015773;XM_005381976;XM_013512777 XP_005382033;XP_013368231 MODEL 8935129 protein-coding Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 INVOLVED IN ceramide metabolic process (ortholog); motor behavior (ortholog); myelination (ortholog); ASSOCIATED WITH asthma (ortholog); hypertrophic cardiomyopathy 25 (ortholog); ulcerative colitis (ortholog); FOUND IN endoplasmic reticulum (ortholog); serine palmitoyltransferase complex (ortholog) NW_004955451 14621565 14627556 - 102004663 AGCD01043561;GBCB01020355;XM_005394327;XM_005394329 XP_005394384;XP_005394386 MODEL 8895939 protein-coding Slc9a4 solute carrier family 9 member A4 ENCODES a protein that exhibits sodium:proton antiporter activity (ortholog); INVOLVED IN gastric acid secretion (ortholog); glandular epithelial cell development (ortholog); transepithelial ammonium transport (ortholog); ASSOCIATED WITH Acidoses (ortholog); aortic dissection (ortholog); FOUND IN basolateral plasma membrane (ortholog) NW_004955470 7936677 7989946 + 102021871 AGCD01052816;GBDK01123983;XM_005400773 XP_005400830 MODEL 8957259 protein-coding Pdyn prodynorphin INVOLVED IN response to immobilization stress (ortholog); response to nicotine (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); Alcohol Withdrawal Seizures (ortholog); FOUND IN axon terminus (ortholog); dendritic spine (ortholog); dense core granule (ortholog) NW_004955415 13106087 13119497 - 102012315 AGCD01016242;GBDJ01390054;XM_005380743;XM_005380744 XP_005380800;XP_005380801 MODEL 8702945 pseudo LOC102005316 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial pseudogene NW_004955445 11834175 11839386 - 102005316 AGCD01039717;XM_005392425 MODEL 8753009 protein-coding Sema3e semaphorin 3E ENCODES a protein that exhibits receptor ligand activity (ortholog); semaphorin receptor binding (ortholog); INVOLVED IN branching involved in blood vessel morphogenesis (ortholog); gonadotrophin-releasing hormone neuronal migration to the hypothalamus (ortholog); negative regulation of angiogenesis (ortholog); ASSOCIATED WITH amenorrhea (ortholog); CHARGE syndrome (ortholog); dilated cardiomyopathy (ortholog) NW_004955410 2732983 2831220 + 102013591 AGCD01010635;GBBH01036865;GBDI01386388;XM_013510666 XP_013366120 MODEL 8978359 protein-coding LOC102010109 olfactory receptor 1D2-like NW_004955580 1150676 1151682 - 102010109 AGCD01075649;XM_005414224 XP_005414281 MODEL 8833726 ncrna LOC102010449 uncharacterized LOC102010449 NW_004955408 9399013 9409596 + 102010449 AGCD01008249;GBDF01235295;XR_259676 MODEL 8742730 pseudo LOC102003583 zinc transporter ZIP2 pseudogene NW_004955436 12539750 12540990 + 102003583 AGCD01033843 MODEL 9042516 pseudo LOC102012474 39S ribosomal protein L18, mitochondrial pseudogene NW_004955540 2266992 2270829 - 102012474 AGCD01071316 MODEL 8966075 protein-coding Rpsa ribosomal protein SA ENCODES a protein that exhibits DNA binding (ortholog); laminin binding (ortholog); ribosome binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cell-cell adhesion (ortholog); epithelial cell differentiation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Animal Disease Models (ortholog); arrhythmogenic right ventricular dysplasia 5 (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN basement membrane (ortholog); collagen-containing extracellular matrix (ortholog); cytoplasm (ortholog) NW_004955420 29978160 29983544 - 102012437 AGCD01021522;AGCD01021523;AGCD01021524;GBCC01000804;GBDI01017836;XM_013513553 XP_013369007 MODEL 8992638 ncrna LOC102018860 uncharacterized LOC102018860 NW_004955439 13825758 13882758 + 102018860 AGCD01035968;GBDF01154382;XR_001235173 MODEL 10075246 ncrna LOC106149790 uncharacterized LOC106149790 NW_004955406 2410016 2422198 - 106149790 AGCD01005646;GBDF01290562;XR_001236184;XR_001236185;XR_001236186 MODEL 8989909 ncrna LOC102008215 uncharacterized LOC102008215 NW_004955415 2147670 2175932 + 102008215 AGCD01015895;AGCD01015896;AGCD01015897;AGCD01015898;GBDK01355203;XR_260259 MODEL 8992611 protein-coding Vwa5b1 von Willebrand factor A domain containing 5B1 ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); congenital disorder of glycosylation Ir (ortholog); hyperprolinemia type 2 (ortholog) NW_004955452 874819 938134 + 102018677 AGCD01043828;GBDK01400521;XM_005394679;XM_013519734;XM_013519735 XP_005394736;XP_013375188;XP_013375189 MODEL 39131346 protein-coding RAMP1 receptor activity modifying protein 1 8879911 ncrna LOC102021447 uncharacterized LOC102021447 NW_004955419 7019339 7024396 - 102021447 AGCD01019869;GBDF01146333;XR_260613 MODEL 8924612 protein-coding Ptgr3 prostaglandin reductase 3 ENCODES a protein that exhibits 15-oxoprostaglandin 13-oxidase [NAD(P)+] activity (ortholog); INVOLVED IN negative regulation of fat cell differentiation (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrion (ortholog); peroxisome (ortholog) NW_004955402 58634433 58642498 - 102014848 AGCD01001535;AGCD01001536;AGCD01001537;GBBH01187216;GBCQ01006883;XM_005373085 XP_005373142 MODEL 9050268 protein-coding Bpifb2 BPI fold containing family B member 2 ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase (ortholog) NW_004955422 28233236 28251627 - 102004722 AGCD01023345;GBBH01228047;XM_005384855;XM_013513871;XM_013513872;XM_013513873;XM_013513874 XP_005384912;XP_013369325;XP_013369326;XP_013369327;XP_013369328 MODEL 8968573 trna Trnat-cgu transfer RNA threonine (anticodon CGU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955442;NW_004955465;NW_004955465;NW_004955481 4512289;13846174;13285428;6565067 4512360;13846247;13285500;6565138 -;+;+;+ 101978813 AGCD01037528;AGCD01050597;AGCD01050627;AGCD01057031 MODEL 8971796 pseudo LOC102015423 nuclease-sensitive element-binding protein 1 pseudogene NW_004955427 22766997 22772487 + 102015423 AGCD01027476;XR_261285 MODEL 8792209 protein-coding Ldlr low density lipoprotein receptor ENCODES a protein that exhibits amyloid-beta binding (ortholog); identical protein binding (ortholog); low-density lipoprotein particle binding (ortholog); INVOLVED IN amyloid-beta clearance (ortholog); amyloid-beta clearance by cellular catabolic process (ortholog); artery development (ortholog); PARTICIPATES IN atherosclerosis pathway; ASSOCIATED WITH alpha-mannosidosis (ortholog); Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); FOUND IN apical part of cell (ortholog); basolateral plasma membrane (ortholog); caveola (ortholog) NW_004955495 2114702 2135584 + 102029196 AGCD01061748;GBCE01114790;XM_013505178 XP_013360632 MODEL 8706093 ncrna LOC102018861 uncharacterized LOC102018861 NW_004955547 1458211 1476533 - 102018861 AGCD01072224;AGCD01072225;GBDJ01374207;XR_001232216 MODEL 8863689 protein-coding Smtn smoothelin INVOLVED IN negative regulation of systemic arterial blood pressure (ortholog); positive regulation of cardiac muscle contraction (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955455 5271615 5294151 + 102030038 AGCD01045720;GBDF01050278;XM_005396291;XM_005396292;XM_005396293;XM_005396294 XP_005396348;XP_005396349;XP_005396350;XP_005396351 MODEL 8931510 protein-coding Plekhm3 pleckstrin homology domain containing M3 INVOLVED IN myoblast differentiation (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); primary pulmonary hypertension (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955457 7065443 7239663 + 102008701 AGCD01046868;AGCD01046869;AGCD01046870;AGCD01046871;AGCD01046872;AGCD01046873;AGCD01046874;GBBH01021390;XM_005396971;XM_005396973;XM_005396974 XP_005397028;XP_005397030;XP_005397031 MODEL 9041715 protein-coding LOC102010858 heterogeneous nuclear ribonucleoprotein U-like protein 2 NW_004957878 562 1192 + 102010858 AGCD01081274;XM_005415235 XP_005415292 MODEL 8741608 protein-coding Tomm70 translocase of outer mitochondrial membrane 70 ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN activation of innate immune response (ortholog); cellular response to virus (ortholog); negative regulation of cell growth involved in cardiac muscle cell development (ortholog); PARTICIPATES IN alpha-helical insertion pathway of mitochondrial protein import; beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; ASSOCIATED WITH Cardiomegaly (ortholog); congestive heart failure (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955427 1874277 1908245 - 102014589 AGCD01026884;GBCE01075536;XM_013515046 XP_013370500 MODEL 8726199 ncrna LOC102011238 uncharacterized LOC102011238 NW_004955435 16675032 16735309 - 102011238 AGCD01033336;AGCD01033337;GBDF01045771;XR_001234857;XR_001234858;XR_261711;XR_261713 MODEL 10265533 protein-coding Prima1 proline rich membrane anchor 1 ENCODES a protein that exhibits enzyme binding (ortholog); protein-membrane adaptor activity (ortholog); INVOLVED IN establishment of localization in cell (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); autosomal dominant nocturnal frontal lobe epilepsy (ortholog); DICER1 syndrome (ortholog); FOUND IN membrane raft (ortholog); plasma membrane (ortholog) NW_004955438 15835641 15903484 - 106149170 AGCD01035385;AGCD01035386;AGCD01035387;AGCD01035388;GBDI01385092;GBDJ01044136;XM_013517273 XP_013372727 MODEL 8942774 protein-coding Pcf11 PCF11 cleavage and polyadenylation factor subunit ENCODES a protein that exhibits RNA polymerase II complex binding (ortholog); INVOLVED IN termination of RNA polymerase II transcription (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; ASSOCIATED WITH acute megakaryocytic leukemia (ortholog); intellectual disability (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955414 9401919 9428501 - 102027288 AGCD01015021;AGCD01015022;GBCE01076145;XM_005379801;XM_005379802 XP_005379858;XP_005379859 MODEL 8757567 protein-coding R3hcc1 R3H domain and coiled-coil containing 1 ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog) NW_004955403 46482255 46502194 + 102017622 AGCD01002860;GBDF01003219;XM_005373697;XM_013513971 XP_005373754;XP_013369425 MODEL 8853081 protein-coding Phf2 PHD finger protein 2 ENCODES a protein that exhibits histone H3K4me3 reader activity (ortholog); histone H3K9 demethylase activity (ortholog); histone H4K20 demethylase activity (ortholog); INVOLVED IN negative regulation of rDNA heterochromatin formation (ortholog); protein demethylation (ortholog); transcription initiation-coupled chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); hiatus hernia (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN kinetochore (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955515 4428068 4471642 - 102023288 AGCD01067320;AGCD01067321;GBCB01056324;XM_005408895 XP_005408952 MODEL 9008420 protein-coding Slc35f4 solute carrier family 35 member F4 NW_004955466 11436970 11465593 - 102028516 AGCD01051093;AGCD01051094;GBDF01105346;XM_013521882 XP_013377336 MODEL 8945798 pseudo LOC102017342 tumor protein D52 pseudogene NW_004955419 28917493 28928278 + 102017342 AGCD01020479 MODEL 8761390 protein-coding LOC102011647 olfactory receptor 52B2-like NW_004955414 21925278 21926526 - 102011647 AGCD01015437;XM_013511699 XP_013367153 MODEL 9046931 protein-coding Pithd1 PITH domain containing 1 INVOLVED IN penetration of cumulus oophorus (ortholog); penetration of zona pellucida (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN cytoplasm (ortholog); sperm cytoplasmic droplet (ortholog) NW_004955452 3696632 3708166 + 102021078 AGCD01043935;AGCD01043936;GBCE01152531;XM_005394782 XP_005394839 MODEL 8931125 protein-coding Thap8 THAP domain containing 8 ASSOCIATED WITH Brugada syndrome 5 (ortholog); hereditary spastic paraplegia 75 (ortholog) NW_004955468 2545327 2559106 + 102010888 AGCD01051825;AGCD01051826;AGCD01051827;GBDK01230411;XM_005399924 XP_005399981 MODEL 8968169 protein-coding LOC102010112 small proline-rich protein 2F-like NW_004955592 331537 332801 + 102010112 AGCD01076304;GBDI01097716;XM_005414612 XP_005414669 MODEL 39133363 snorna SNORD99 small nucleolar RNA, C/D box 99 9003567 protein-coding Slc22a31 solute carrier family 22 member 31 ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 4 (ortholog); Fanconi anemia (ortholog) NW_004955541 2894053 2897032 - 102028132 AGCD01071430;GBCQ01164308;XM_013507988 XP_013363442 MODEL 8936900 pseudo LOC102006348 transcription factor 4 pseudogene NW_004955418 11676381 11678020 + 102006348 AGCD01019007 MODEL 8740709 pseudo LOC102024147 laccase domain-containing protein 1-like NW_004955509 6401840 6403071 + 102024147 AGCD01066121 MODEL 8925763 pseudo LOC102018480 nucleosome assembly protein 1-like 1 pseudogene NW_004955411 3844425 3845502 - 102018480 AGCD01011556 MODEL 8785636 protein-coding Sprn shadow of prion protein ENCODES a protein that exhibits nucleic acid binding (ortholog); INVOLVED IN protein import into nucleus (ortholog); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); nucleolus (ortholog) NW_004955477 11058388 11062786 - 102007336 AGCD01055714;GBDF01232323;XM_005402074;XM_005402075;XR_001230816;XR_001230817 XP_005402131;XP_005402132 MODEL 8708247 protein-coding Rgl3 ral guanine nucleotide dissociation stimulator like 3 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog) NW_004955495 2304820 2319171 - 102029874 AGCD01061764;AGCD01061765;AGCD01061766;GBCE01074618;XM_013505110 XP_013360564 MODEL 10291893 protein-coding LOC106146962 uncharacterized LOC106146962 NW_004955508 4373397 4382687 - 106146962 AGCD01065866;GBDF01198867;XM_013506247 XP_013361701 MODEL 39131510 protein-coding PRIMA1 proline rich membrane anchor 1 8725796 protein-coding LOC102023168 melanoma-associated antigen 10-like NW_004955498 4247845 4248615 - 102023168 AGCD01062979;XM_005406483 XP_005406540 MODEL 8744069 ncrna LOC102009348 uncharacterized LOC102009348 NW_004955455 11123017 11124542 - 102009348 AGCD01045984;GBDF01074169;XR_262855;XR_262856 MODEL 8982998 pseudo LOC102012478 60S ribosomal protein L39 pseudogene NW_004955442 7979367 7988554 - 102012478 AGCD01037634;AGCD01037635;XM_005391201;XM_005391202 MODEL 8834238 protein-coding Polg DNA polymerase gamma, catalytic subunit ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); 5'-deoxyribose-5-phosphate lyase activity (ortholog); chromatin binding (ortholog); INVOLVED IN base-excision repair (ortholog); base-excision repair, gap-filling (ortholog); cellular response to glucose stimulus (ortholog); ASSOCIATED WITH Alpers-Huttenlocher syndrome (ortholog); Ataxia (ortholog); autistic disorder (ortholog); FOUND IN gamma DNA polymerase complex (ortholog); intracellular membrane-bounded organelle (ortholog); mitochondrial chromosome (ortholog) NW_004955416 15773005 15788736 + 102003340 AGCD01017343;GBDI01169870;XM_005381556 XP_005381613 MODEL 8937573 protein-coding Rbm7 RNA binding motif protein 7 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); pre-mRNA intronic binding (ortholog); RNA binding (ortholog); INVOLVED IN snRNA catabolic process (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955412 15996206 16004177 + 102012747 AGCD01012888;GBDF01082376;XM_005378157;XM_005378158 XP_005378214;XP_005378215 MODEL 8707896 protein-coding R3hcc1l R3H domain and coiled-coil containing 1 like FOUND IN exon-exon junction complex (ortholog) NW_004955507 4150389 4228412 + 102011345 AGCD01065640;AGCD01065641;AGCD01065642;GBDF01123772;XM_005407656;XM_005407657;XM_005407659;XM_005407660 XP_005407713;XP_005407714;XP_005407716;XP_005407717 MODEL 8833379 protein-coding Sema3f semaphorin 3F ENCODES a protein that exhibits chemorepellent activity (ortholog); INVOLVED IN axon extension involved in axon guidance (ortholog); axon guidance (ortholog); branchiomotor neuron axon guidance (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN glutamatergic synapse (ortholog) NW_004955532 1992417 2015879 + 102025393 AGCD01070209;GBCE01029838;XM_013507643;XM_013507644 XP_013363097;XP_013363098 MODEL 8947040 protein-coding Napepld N-acyl phosphatidylethanolamine phospholipase D ENCODES a protein that exhibits bile acid binding (ortholog); identical protein binding (ortholog); N-acylphosphatidylethanolamine-specific phospholipase D activity (ortholog); INVOLVED IN host-mediated regulation of intestinal microbiota composition (ortholog); N-acylethanolamine metabolic process (ortholog); N-acylphosphatidylethanolamine metabolic process (ortholog); ASSOCIATED WITH Huntington's disease (ortholog); Leukoencephalomyelopathy (ortholog); osteoarthritis (ortholog); FOUND IN Golgi apparatus (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); postsynaptic membrane (ortholog) NW_004955410 8217684 8233302 - 102015181 AGCD01010738;AGCD01010739;GBCB01089347;GBCB01098895;XM_013510537 XP_013365991 MODEL 39133596 snorna snoZ196 Small nucleolar RNA Z196/R39/R59 family 39131535 protein-coding RAMP2 receptor activity modifying protein 2 8734060 pseudo LOC102005317 tubulin alpha-1C chain-like NW_004955569 1268620 1269973 + 102005317 AGCD01074645 MODEL 9019771 pseudo LOC102006731 thymosin beta-10 pseudogene NW_004955402 41974553 41978585 + 102006731 AGCD01001028;XM_005372978 MODEL 8955668 protein-coding Slc9a5 solute carrier family 9 member A5 ENCODES a protein that exhibits arrestin family protein binding (ortholog); sodium:proton antiporter activity (ortholog); INVOLVED IN proton transmembrane transport (ortholog); regulation of intracellular pH (ortholog); sodium ion transmembrane transport (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); end stage renal disease (ortholog); FOUND IN focal adhesion (ortholog); neuron spine (ortholog); plasma membrane (ortholog) NW_004955484 9359468 9379959 - 102008225 AGCD01058415;GBDJ01263485;XM_005403668;XM_005403669;XM_013503897;XM_013503898;XM_013503899;XM_013503900;XM_013503901;XM_013503902;XM_013503903 XP_005403725;XP_005403726;XP_013359351;XP_013359352;XP_013359353;XP_013359354;XP_013359355;XP_013359356;XP_013359357 MODEL 8976803 protein-coding Ptgs1 prostaglandin-endoperoxide synthase 1 ENCODES a protein that exhibits prostaglandin-endoperoxide synthase activity (ortholog); INVOLVED IN cyclooxygenase pathway (ortholog); learning (ortholog); maintenance of blood-brain barrier (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Anaphylaxis (ortholog); autism spectrum disorder (ortholog); FOUND IN cytoplasm (ortholog); nuclear envelope (ortholog); nucleus (ortholog) NW_004955419 5678750 5699305 - 102008534 AGCD01019834;GBCQ01066127;XM_005382532;XM_013513294 XP_005382589;XP_013368748 MODEL 8858927 protein-coding LOC102024148 olfactory receptor 1020 NW_004955511 1745965 1747014 - 102024148 AGCD01066378;XM_005408241 XP_005408298 MODEL 9051090 protein-coding LOC102007845 cadherin-4 NW_004956069 2464 8492 + 102007845 AGCD01078992;GBDF01207475;XM_005415167 XP_005415224 MODEL 8916569 protein-coding Ldlrad1 low density lipoprotein receptor class A domain containing 1 NW_004955464 5233134 5243730 + 102006435 AGCD01050001;GBDJ01227901;XM_005398540 XP_005398597 MODEL 8860751 protein-coding LOC102010451 olfactory receptor 1361-like NW_004955408 1580644 1581941 + 102010451 AGCD01007965;XM_005376561 XP_005376618 MODEL 8744501 protein-coding Pdzd11 PDZ domain containing 11 INVOLVED IN pore complex assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); epilepsy (ortholog); FOUND IN basolateral plasma membrane (ortholog); cytosol (ortholog); pore complex (ortholog) NW_004955475 9841950 9845565 - 102022693 AGCD01055075;GBDK01077848;XM_005401618;XM_005401619;XM_005401620;XM_013502873 XP_005401675;XP_005401676;XP_005401677;XP_013358327 MODEL 8912959 protein-coding Prss38 serine protease 38 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955581 455309 458793 - 102023756 AGCD01075673;AGCD01075674;GBDF01053786;XM_005414263 XP_005414320 MODEL 8785537 protein-coding Paip2b poly(A) binding protein interacting protein 2B ENCODES a protein that exhibits mRNA regulatory element binding translation repressor activity (ortholog); INVOLVED IN negative regulation of translational initiation (ortholog); ASSOCIATED WITH dystonia (ortholog); Methylmalonyl-CoA Epimerase Deficiency (ortholog) NW_004955424 14157358 14190865 + 102028555 AGCD01024646;AGCD01024647;GBDF01220413;XM_005385602;XM_013514637 XP_005385659;XP_013370091 MODEL 8862766 protein-coding Trim13 tripartite motif containing 13 ENCODES a protein that exhibits transcription coactivator activity (ortholog); ubiquitin-like protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN ERAD pathway (ortholog); innate immune response (ortholog); negative regulation of viral transcription (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog); perinuclear endoplasmic reticulum (ortholog) NW_004955431 3324331 3395724 + 102028005 AGCD01029962;AGCD01029963;AGCD01029964;GBCE01111270;XM_005387600;XM_013515780 XP_005387657;XP_013371234 MODEL 8796808 protein-coding Ell3 elongation factor for RNA polymerase II 3 INVOLVED IN DNA-templated transcription elongation (ortholog); positive regulation of DNA-templated transcription, elongation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cell junction (ortholog); chromosome (ortholog); cytosol (ortholog) NW_004955416 10223213 10226978 - 102011441 AGCD01017119;GBBH01198088;XM_005381405 XP_005381462 MODEL 8726862 pseudo LOC102017346 polyadenylate-binding protein-interacting protein 1-like NW_004955420 15919327 15926645 + 102017346 AGCD01020984 MODEL 8917607 protein-coding Pitpna phosphatidylinositol transfer protein alpha ENCODES a protein that exhibits fatty-acyl-CoA binding (ortholog); lipid binding (ortholog); phosphatidylcholine binding (ortholog); INVOLVED IN axonogenesis (ortholog); phospholipid transport (ortholog); ASSOCIATED WITH chylomicron retention disease (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955481 1611579 1649481 + 102020115 AGCD01056838;AGCD01056839;AGCD01056840;GBDF01118413;XM_005402620 XP_005402677 MODEL 39132946 snorna SNORA74 Small nucleolar RNA SNORA74 8882215 pseudo LOC102021449 pyrethroid hydrolase Ces2e-like NW_004955484 9684942 9693526 - 102021449 AGCD01058425 MODEL 8799202 ncrna LOC102015428 uncharacterized LOC102015428 NW_004955429 21524845 21543864 - 102015428 AGCD01029005;GBDF01194430;XR_261375;XR_261376 MODEL 8937722 pseudo LOC102018872 ELAV-like protein 1 pseudogene NW_004955574 1566040 1566941 - 102018872 AGCD01075190 MODEL 39132951 snrna U2 U2 spliceosomal RNA 8767572 protein-coding Vwa5b2 von Willebrand factor A domain containing 5B2 ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); congenital disorder of glycosylation Id (ortholog); Currarino syndrome (ortholog) NW_004955420 23243197 23253202 - 102029752 AGCD01021238;GBCQ01177082;GBCQ01177083;XM_013513358;XM_013513359 XP_013368812;XP_013368813 MODEL 8860945 protein-coding Smtnl1 smoothelin like 1 ENCODES a protein that exhibits calmodulin binding (ortholog); CH domain binding (ortholog); disordered domain specific binding (ortholog); INVOLVED IN muscle organ morphogenesis (ortholog); negative regulation of DNA-templated transcription (ortholog); peptidyl-serine phosphorylation (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN contractile muscle fiber (ortholog); cytoplasm (ortholog); I band (ortholog) NW_004955511 2512950 2521200 + 102018208 AGCD01066410;GBCB01004951;XM_005407998 XP_005408055 MODEL 8732003 protein-coding Bpifb3 BPI fold containing family B member 3 ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase (ortholog); FOUND IN cytoplasm (ortholog) NW_004955422 28192359 28208946 - 102003885 AGCD01023345;GBBH01229204;XM_005384853 XP_005384910 MODEL 8806556 protein-coding LOC102010861 chromosome unknown open reading frame, human C1orf94 ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog) NW_004955452 12288967 12325948 + 102010861 AGCD01044350;GBDF01048888;XM_005395119;XM_005395120;XM_005395121 XP_005395176;XP_005395177;XP_005395178 MODEL 8933622 protein-coding Sema3g semaphorin 3G ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN negative regulation of axon extension (ortholog); ASSOCIATED WITH congenital disorder of glycosylation In (ortholog) NW_004955430 2409847 2433001 - 102016080 AGCD01029165;AGCD01029166;GBDK01008724;XM_005387316;XM_005387318 XP_005387373;XP_005387375 MODEL 8833346 protein-coding Pcgf1 polycomb group ring finger 1 INVOLVED IN chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); Methylmalonyl-CoA Epimerase Deficiency (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); PcG protein complex (ortholog) NW_004955424 11282562 11284970 + 102024588 AGCD01024561;GBDF01187198;XM_005385494 XP_005385551 MODEL 8815616 protein-coding Tonsl tonsoku like, DNA repair protein ENCODES a protein that exhibits histone binding (ortholog); histone reader activity (ortholog); INVOLVED IN double-strand break repair via homologous recombination (ortholog); protein localization to chromatin (ortholog); replication fork processing (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); genetic disease (ortholog); FOUND IN DNA replication factor A complex (ortholog); FACT complex (ortholog); MCM complex (ortholog) NW_004955454 3054727 3067785 - 102006630 AGCD01045050;GBBH01121727;XM_005395889;XM_005395890;XM_013520284;XM_013520285 XP_005395946;XP_005395947;XP_013375738;XP_013375739 MODEL 8967210 protein-coding Phf20 PHD finger protein 20 ASSOCIATED WITH Dwarfism (ortholog); FOUND IN cytosol (ortholog); histone acetyltransferase complex (ortholog); MLL1 complex (ortholog) NW_004955422 25563511 25688546 - 102004175 AGCD01023253;AGCD01023254;AGCD01023255;AGCD01023256;AGCD01023257;AGCD01023258;AGCD01023259;AGCD01023260;GBDK01185246;XM_005384764;XM_005384766;XM_005384767;XM_013514071;XM_013514072;XM_013514073 XP_005384821;XP_005384823;XP_005384824;XP_013369525;XP_013369526;XP_013369527 MODEL 8797188 ncrna LOC102024149 uncharacterized LOC102024149 NW_004955431 15828867 15848471 - 102024149 AGCD01030364;GBDF01014760;XR_001234583;XR_261480 MODEL 9028373 protein-coding Rgma repulsive guidance molecule BMP co-receptor a ENCODES a protein that exhibits coreceptor activity (ortholog); signaling receptor binding (ortholog); transferrin receptor binding (ortholog); INVOLVED IN BMP signaling pathway (ortholog); membrane protein ectodomain proteolysis (ortholog); negative regulation of axon regeneration (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH middle cerebral artery infarction (ortholog); multiple sclerosis (ortholog); Penetrating Eye Injuries (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum (ortholog) NW_004955416 21221023 21261831 - 102019388 AGCD01017498;AGCD01017499;AGCD01017500;GBCB01024629;GBDI01174076;XM_005381602 XP_005381659 MODEL 10078157 protein-coding LOC106149791 translation initiation factor IF-2-like NW_004955453 4671636 4672261 + 106149791 AGCD01044696;GBDF01085928;XM_013519953 XP_013375407 MODEL 8957251 protein-coding LOC102010114 vomeronasal type-1 receptor 4-like NW_004955603 478161 479087 + 102010114 AGCD01076848;XM_005414845 XP_005414902 MODEL 8877899 protein-coding Rptn repetin ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN cornified envelope (ortholog) NW_004955589 245804 252190 + 102009443 AGCD01076159;AGCD01076160;GBDI01105484;XM_013509952 XP_013365406 MODEL 8931135 protein-coding LOC102011649 NADH-cytochrome b5 reductase 2 ENCODES a protein that exhibits cytochrome-b5 reductase activity, acting on NAD(P)H (ortholog); FOUND IN membrane (ortholog) NW_004955414 23421387 23427883 - 102011649 AGCD01015497;GBCE01040815;GBDJ01193166;XM_013511703 XP_013367157 MODEL 8941506 protein-coding Primpol primase and DNA directed polymerase ENCODES a protein that exhibits chromatin binding (ortholog); DNA-directed DNA polymerase activity (ortholog); DNA-directed RNA polymerase activity (ortholog); INVOLVED IN error-prone translesion synthesis (ortholog); mitochondrial DNA repair (ortholog); mitochondrial DNA replication (ortholog); ASSOCIATED WITH Myopia 22, Autosomal Dominant (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955403 24278727 24307312 - 102004998 AGCD01002271;GBDF01017298;XM_005373485;XM_013513029;XM_013513031;XM_013513040;XM_013513046 XP_005373542;XP_013368483;XP_013368485;XP_013368494;XP_013368500 MODEL 9049121 protein-coding Os9 OS9 endoplasmic reticulum lectin ENCODES a protein that exhibits glycosylation-dependent protein binding (ortholog); protease binding (ortholog); INVOLVED IN ERAD pathway (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); protein retention in ER lumen (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); familial melanoma (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog); Hrd1p ubiquitin ligase complex (ortholog) NW_004955458 5407709 5432646 + 102010131 AGCD01047487;AGCD01047488;AGCD01047489;AGCD01047490;AGCD01047491;AGCD01047492;GBDF01046996;XM_013520941 XP_013376395 MODEL 15036855 trna Trnat-ggu transfer RNA threonine (anticodon GGU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978811 8756375 ncrna LOC102018485 uncharacterized LOC102018485 NW_004955468 12167937 12170801 - 102018485 AGCD01052145;GBCQ01188108;XR_001236937;XR_263417 MODEL 8977620 protein-coding Pak1 p21 (RAC1) activated kinase 1 ENCODES a protein that exhibits collagen binding (ortholog); gamma-tubulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); amygdala development (ortholog); branching morphogenesis of an epithelial tube (ortholog); PARTICIPATES IN adenosine signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); Alzheimer's disease (ortholog); brain ischemia (ortholog); FOUND IN actin filament (ortholog); axon (ortholog); cell-cell junction (ortholog) NW_004955414 14365325 14447470 + 102009932 AGCD01015150;GBDF01277307;XM_005379836;XM_005379837;XM_013512033 XP_005379893;XP_005379894;XP_013367487 MODEL 8987502 protein-coding R3hdm1 R3H domain containing 1 ASSOCIATED WITH WHIM Syndrome (ortholog) NW_004955440 2908721 3076522 + 102008573 AGCD01036228;AGCD01036229;AGCD01036230;AGCD01036231;GBDF01053670;XM_013517471;XM_013517472;XM_013517473;XM_013517474;XM_013517475;XM_013517476;XM_013517477;XM_013517478;XM_013517479 XP_013372925;XP_013372926;XP_013372927;XP_013372928;XP_013372929;XP_013372930;XP_013372931;XP_013372932;XP_013372933 MODEL 8761382 ncrna LOC102011240 uncharacterized LOC102011240 NW_004955435 21229107 21260847 + 102011240 AGCD01033474;GBDI01025489;XR_001234872;XR_261731;XR_261732 MODEL 8936991 protein-coding Snph syntaphilin INVOLVED IN neuron differentiation (ortholog); PARTICIPATES IN mitochondria transport pathway; FOUND IN cytoplasm (ortholog); cytoplasmic microtubule (ortholog); mitochondrial membrane (ortholog) NW_004955596 489174 531226 + 102013129 AGCD01076519;AGCD01076520;AGCD01076521;GBDF01288084;XM_005414698;XM_005414699;XM_013510013;XM_013510015;XM_013510016;XM_013510017;XM_013510018 XP_005414755;XP_005414756;XP_013365467;XP_013365469;XP_013365470;XP_013365471;XP_013365472 MODEL 8867389 ncrna LOC102018873 uncharacterized LOC102018873 NW_004955402 23899043 23959834 + 102018873 AGCD01000634;GBDF01014734;XR_259065 MODEL 39132566 snrna U2 U2 spliceosomal RNA 8833910 protein-coding Ptgs2 prostaglandin-endoperoxide synthase 2 ENCODES a protein that exhibits enzyme binding (ortholog); heme binding (ortholog); oxidoreductase activity, acting on single donors with incorporation of molecular oxygen (ortholog); INVOLVED IN angiogenesis (ortholog); bone mineralization (ortholog); brown fat cell differentiation (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); acute kidney failure (ortholog); Acute Liver Failure (ortholog); FOUND IN caveola (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955406 25077988 25086259 - 102014110 AGCD01006213;AGCD01006214;GBCQ01175625;GBDJ01276049;XM_005375091 XP_005375148 MODEL 8847101 protein-coding Thap9 THAP domain containing 9 ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); transposase activity (ortholog); INVOLVED IN DNA integration (ortholog); DNA recombination (ortholog); DNA transposition (ortholog); ASSOCIATED WITH chromosome 4q21 deletion syndrome (ortholog) NW_004955433 6906034 6922832 + 102008139 AGCD01031555;AGCD01031556;AGCD01031557;GBBH01144757;GBDF01307948;XM_013516173 XP_013371627 MODEL 8701672 protein-coding LOC102009351 olfactory receptor 1361-like NW_004955408 1568710 1569651 + 102009351 AGCD01007965;XM_005376033 XP_005376090 MODEL 8704359 protein-coding LOC102012479 uncharacterized LOC102012479 NW_004955559 461354 469388 - 102012479 AGCD01073586;GBDK01094411;XM_013508927;XM_013508928;XM_013508929;XM_013508930;XM_013508931;XM_013508932;XM_013508933;XM_013508934 XP_013364381;XP_013364382;XP_013364383;XP_013364384;XP_013364385;XP_013364386;XP_013364387;XP_013364388 MODEL 8744578 protein-coding Polg2 DNA polymerase gamma 2, accessory subunit ENCODES a protein that exhibits DNA polymerase binding (ortholog); DNA polymerase processivity factor activity (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN DNA-templated DNA replication (ortholog); in utero embryonic development (ortholog); mitochondrial DNA metabolic process (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 4 (ortholog); chronic progressive external ophthalmoplegia (ortholog); FOUND IN gamma DNA polymerase complex (ortholog); mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog) NW_004955478 7376240 7396647 + 102027847 AGCD01055959;AGCD01055960;GBBH01117427;GBDI01128987;XM_013503174;XM_013503175 XP_013358628;XP_013358629 MODEL 8911149 protein-coding LOC102006353 sodium- and chloride-dependent transporter XTRP3A NW_004955420 26159281 26191883 + 102006353 AGCD01021392;GBCE01175467;XM_005383468 XP_005383525 MODEL 8958932 protein-coding Rgmb repulsive guidance molecule BMP co-receptor b ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN BMP signaling pathway (ortholog); cell adhesion (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment (ortholog); plasma membrane (ortholog) NW_004955418 14305634 14321804 - 102027979 AGCD01019071;GBCE01044704;GBDK01009283;XM_013513020 XP_013368474 MODEL 8833098 protein-coding Phf20l1 PHD finger protein 20 like 1 ENCODES a protein that exhibits methylation-dependent protein binding (ortholog); INVOLVED IN negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); negative regulation of protein catabolic process (ortholog); ASSOCIATED WITH benign neonatal seizures (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog) NW_004955461 7391175 7465012 + 102013260 AGCD01048918;AGCD01048919;GBCE01104746;XM_013521336;XM_013521337;XM_013521338 XP_013376790;XP_013376791;XP_013376792 MODEL 8753865 pseudo LOC102003588 60S ribosomal protein L37 pseudogene NW_004955440 16839141 16839617 + 102003588 AGCD01036533 MODEL 8798300 ncrna LOC102008216 uncharacterized LOC102008216 NW_004955474 1145810 1151690 + 102008216 AGCD01054239;GBDJ01195565;XR_001230733 MODEL 8732335 protein-coding Napg NSF attachment protein gamma ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); dystonia (ortholog); intellectual disability (ortholog); FOUND IN mitochondrion (ortholog); synapse (ortholog) NW_004955402 1888301 1908895 - 102019122 AGCD01000061;AGCD01000062;GBBH01092705;XM_005372585 XP_005372642 MODEL 8707725 pseudo LOC102005318 BRISC complex subunit Abro1 pseudogene NW_004955446 7660056 7661294 - 102005318 AGCD01040126 MODEL 39132944 snorna SNORA74 Small nucleolar RNA SNORA74 8894233 protein-coding Elmo1 engulfment and cell motility 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); SH3 domain binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament-based process (ortholog); cell motility (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); esophagus adenocarcinoma (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); guanyl-nucleotide exchange factor complex (ortholog) NW_004955460 6044827 6580770 + 102028385 AGCD01048466;AGCD01048467;AGCD01048468;AGCD01048469;AGCD01048470;AGCD01048471;GBCQ01162510;XM_005397755;XM_013521230;XM_013521231;XM_013521232 XP_005397812;XP_013376684;XP_013376685;XP_013376686 MODEL 8830066 pseudo LOC102021450 40S ribosomal protein S24 pseudogene NW_004955420 610075 610467 - 102021450 AGCD01020550 MODEL 10357207 ncrna LOC106146963 uncharacterized LOC106146963 NW_004955508 102161 115796 + 106146963 AGCD01065729;AGCD01065730;AGCD01065731;GBCE01125989;XR_001231641 MODEL 9065816 protein-coding Slc35f5 solute carrier family 35 member F5 NW_004955459 15407686 15440536 + 102030285 AGCD01048322;GBBH01117606;GBCC01033256;XM_013521078 XP_013376532 MODEL 8989903 protein-coding LOC102007848 olfactory receptor 4D1-like NW_004955451 4849254 4855277 - 102007848 AGCD01043143;AGCD01043144;GBDF01064574;XM_005394585 XP_005394642 MODEL 8989146 pseudo LOC102010453 adenosine kinase pseudogene NW_004955458 14363282 14364041 - 102010453 AGCD01047832 MODEL 8908962 protein-coding Ldlrad2 low density lipoprotein receptor class A domain containing 2 ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); congenital disorder of glycosylation Ir (ortholog); connective tissue disease (ortholog) NW_004955452 2031868 2057264 + 102011622 AGCD01043873;AGCD01043874;AGCD01043875;AGCD01043876;GBDF01174896;XM_013519453 XP_013374907 MODEL 8855587 protein-coding Slc9a6 solute carrier family 9 member A6 ENCODES a protein that exhibits identical protein binding (ortholog); potassium:proton antiporter activity (ortholog); sodium:proton antiporter activity (ortholog); INVOLVED IN axon extension (ortholog); brain-derived neurotrophic factor receptor signaling pathway (ortholog); dendrite extension (ortholog); PARTICIPATES IN angiotensin II signaling pathway via AT2 receptor; ASSOCIATED WITH astigmatism (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN axon terminus (ortholog); axonal spine (ortholog); cytoplasmic vesicle (ortholog) NW_004955489 9020719 9078375 - 102016061 AGCD01060025;GBBH01035448;XM_005404600;XM_005404602 XP_005404657;XP_005404659 MODEL 39132940 snorna SNORA74 Small nucleolar RNA SNORA74 8738102 protein-coding Smtnl2 smoothelin like 2 NW_004955467 12325436 12347569 - 102010571 AGCD01051631;GBCB01002938;XM_005399680;XM_005399681 XP_005399737;XP_005399738 MODEL 10214245 protein-coding LOC106149792 uncharacterized LOC106149792 NW_004955453 1397744 1409504 + 106149792 AGCD01044612;GBDJ01398819;XM_013519954 XP_013375408 MODEL 8793461 ncrna LOC102021452 uncharacterized LOC102021452 NW_004955420 19744171 19769843 + 102021452 AGCD01021066;GBDF01162139;XR_001233826;XR_260726 MODEL 8872289 protein-coding Pcgf2 polycomb group ring finger 2 ENCODES a protein that exhibits chromatin binding (ortholog); ubiquitin-protein transferase activator activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); apoptotic signaling pathway (ortholog); cellular response to hydrogen peroxide (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN chromatin (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955451 13817559 13822342 - 102018552 AGCD01043506;GBCQ01179093;XM_013519275 XP_013374729 MODEL 8912148 protein-coding Sema4a semaphorin 4A INVOLVED IN axonogenesis (ortholog); negative regulation of angiogenesis (ortholog); positive regulation of excitatory synapse assembly (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Colonic Polyps (ortholog) NW_004955545 2316402 2341873 + 102020845 AGCD01071895;AGCD01071896;AGCD01071897;GBDI01084803;XM_005411654;XM_005411655;XM_005411656 XP_005411711;XP_005411712;XP_005411713 MODEL 8751959 protein-coding LOC102024151 odorant-binding protein 2b NW_004955513 2677180 2678707 - 102024151 AGCD01066885;GBBH01002292;GBCE01008927;XM_005408643 XP_005408700 MODEL 8712997 protein-coding Ramp2 receptor activity modifying protein 2 ENCODES a protein that exhibits adrenomedullin binding (ortholog); adrenomedullin receptor activity (ortholog); coreceptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adherens junction assembly (ortholog); adrenomedullin receptor signaling pathway (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); adult respiratory distress syndrome (ortholog); Cardiomegaly (ortholog); FOUND IN adrenomedullin receptor complex (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955451 16584742 16586093 + 102022993 AGCD01043695;GBCB01022684;GBDJ01020216;XM_005394475 XP_005394532 MODEL 8909865 protein-coding Pitpnb phosphatidylinositol transfer protein beta ENCODES a protein that exhibits phosphatidylcholine binding (ortholog); phosphatidylcholine transfer activity (ortholog); phosphatidylcholine transporter activity (ortholog); INVOLVED IN in utero embryonic development (ortholog); phospholipid transport (ortholog); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955455 2210019 2275206 - 102021092 AGCD01045590;AGCD01045591;GBCE01075253;XM_005396160;XM_005396161;XM_013520442 XP_005396217;XP_005396218;XP_013375896 MODEL 9068134 protein-coding LOC102015432 olfactory receptor 8K3-like NW_004955511 1171624 1172571 + 102015432 AGCD01066359;XM_005408225 XP_005408282 MODEL 8954913 protein-coding Rgn regucalcin ENCODES a protein that exhibits calcium ion binding (ortholog); gluconolactonase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN intracellular calcium ion homeostasis (ortholog); kidney development (ortholog); L-ascorbic acid biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955516 958416 978829 - 102024267 AGCD01067406;AGCD01067407;GBDI01162056;XM_005408970;XM_005408971 XP_005409027;XP_005409028 MODEL 8819323 protein-coding Naprt nicotinate phosphoribosyltransferase ENCODES a protein that exhibits nicotinate phosphoribosyltransferase activity (ortholog); INVOLVED IN NAD biosynthetic process (ortholog); NAD biosynthetic process via the salvage pathway (ortholog); response to oxidative stress (ortholog); PARTICIPATES IN nicotinamide adenine dinucleotide biosynthesis, the salvage pathway; ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); FOUND IN cytosol (ortholog) NW_004955454 2280223 2283613 - 102004672 AGCD01045015;GBCB01034857;XM_005395777 XP_005395834 MODEL 9039610 protein-coding LOC102011242 triggering receptor expressed on myeloid cells 1 NW_004955437 7849199 7863437 - 102011242 AGCD01034469;AGCD01034470;GBDJ01061958;XM_005389685;XM_013517118 XP_005389742;XP_013372572 MODEL 39131949 snrna U2 U2 spliceosomal RNA 8750669 protein-coding Elmo2 engulfment and cell motility 2 ENCODES a protein that exhibits receptor tyrosine kinase binding (ortholog); INVOLVED IN cell chemotaxis (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog) NW_004955445 10943838 10982653 + 102018868 AGCD01039680;GBCE01117628;XM_005392377;XM_005392380 XP_005392434;XP_005392437 MODEL 8991542 protein-coding Pitpnc1 phosphatidylinositol transfer protein cytoplasmic 1 ENCODES a protein that exhibits phosphatidic acid binding (ortholog); phosphatidic acid transfer activity (ortholog); phosphatidylcholine transporter activity (ortholog); INVOLVED IN phospholipid transport (ortholog); signal transduction (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955478 6607686 6847716 + 102010900 AGCD01055908;AGCD01055909;AGCD01055910;AGCD01055911;AGCD01055912;AGCD01055913;AGCD01055914;AGCD01055915;AGCD01055916;AGCD01055917;GBCE01153754;XM_005402155;XM_013503184 XP_005402212;XP_013358638 MODEL 8791365 protein-coding Trim14 tripartite motif containing 14 ENCODES a protein that exhibits molecular adaptor activity (ortholog); transcription coactivator activity (ortholog); INVOLVED IN inflammatory response (ortholog); innate immune response (ortholog); negative regulation of viral transcription (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type II (ortholog); congenital myasthenic syndrome 14 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955419 27390098 27420727 + 102019701 AGCD01020432;AGCD01020433;AGCD01020434;GBBH01036750;GBDI01107401;XM_013513283 XP_013368737 MODEL 8845698 protein-coding Plekhn1 pleckstrin homology domain containing N1 ENCODES a protein that exhibits cardiolipin binding (ortholog); phosphatidic acid binding (ortholog); phosphatidylinositol phosphate binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); positive regulation of apoptotic process (ortholog); response to hypoxia (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); COVID-19 (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN cytoskeleton (ortholog); cytosol (ortholog); mitochondrial membrane (ortholog) NW_004955486 9736801 9744659 - 102011126 AGCD01059198;GBDJ01386505;XM_005404287;XM_005404288 XP_005404344;XP_005404345 MODEL 8872806 pseudo LOC102009352 DCN1-like protein 5 pseudogene NW_004955456 8139806 8140820 + 102009352 AGCD01046454 MODEL 8905570 protein-coding Top1 DNA topoisomerase I ENCODES a protein that exhibits ATP binding (ortholog); chromatin binding (ortholog); chromatin DNA binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); cellular response to luteinizing hormone stimulus (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN irinotecan pharmacodynamics pathway; irinotecan pharmacokinetics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); disease of cellular proliferation (ortholog); Disease Progression (ortholog); FOUND IN cytoplasm (ortholog); dense fibrillar component (ortholog); fibrillar center (ortholog) NW_004955445 15834017 15922785 - 102005524 AGCD01039857;AGCD01039858;AGCD01039859;AGCD01039860;GBDJ01176800;XM_005392521 XP_005392578 MODEL 8916763 protein-coding LOC102017348 uncharacterized LOC102017348 NW_004955491 8307194 8311326 + 102017348 AGCD01060613;GBBH01075393;XM_005404861;XM_005404862 XP_005404918;XP_005404919 MODEL 9002121 trna Trnat-ugu transfer RNA threonine (anticodon UGU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955530;NW_004955550;NW_004955431;NW_004955550;NW_004955550 130485;1411138;19443004;1499781;1425424 130557;1411210;19443075;1499853;1425496 +;-;+;+;- 101978812 AGCD01030449;AGCD01069830;AGCD01072566;AGCD01072577 MODEL 8714078 ncrna LOC102011654 uncharacterized LOC102011654 NW_004955476 4365503 4385423 - 102011654 AGCD01055280;GBDI01309143;XR_001230807;XR_001230808;XR_001230809;XR_001230810 MODEL 10081585 protein-coding Sprr4 small proline rich protein 4 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog) NW_004955592 424261 426415 - 106147604 AGCD01076313;XM_013509983 XP_013365437 MODEL 8890141 protein-coding Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ENCODES a protein that exhibits AMP-activated protein kinase activity (ortholog); ATP binding (ortholog); chromatin binding (ortholog); INVOLVED IN CAMKK-AMPK signaling cascade (ortholog); cellular response to calcium ion (ortholog); cellular response to ethanol (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); amenorrhea (ortholog); breast cancer (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); chromatin (ortholog) NW_004955426 25079718 25102090 - 102025600 AGCD01026701;GBDK01358699;XM_005386244 XP_005386301 MODEL 8950049 protein-coding Osbp oxysterol binding protein ENCODES a protein that exhibits phosphatidylinositol-4-phosphate binding (ortholog); protein domain specific binding (ortholog); sterol transfer activity (ortholog); INVOLVED IN ceramide transport (ortholog); intracellular cholesterol transport (ortholog); phospholipid transport (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); dengue hemorrhagic fever (ortholog); Dwarfism (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955511 4057514 4076039 - 102011788 AGCD01066491;GBCE01030463;GBDJ01014825;XM_005408065 XP_005408122 MODEL 8934841 protein-coding Pak1ip1 PAK1 interacting protein 1 INVOLVED IN cell population proliferation (ortholog); regulation of signal transduction by p53 class mediator (ortholog); ribosomal large subunit biogenesis (ortholog); ASSOCIATED WITH cataract 13 with adult i phenotype (ortholog); FOUND IN nucleolus (ortholog) NW_004955465 3635004 3644638 - 102020779 AGCD01050385;GBCB01059756;XM_005398836 XP_005398893 MODEL 8897957 ncrna LOC102008217 uncharacterized LOC102008217 NW_004955474 7214695 7216543 - 102008217 AGCD01054516;GBDF01280192;XR_263600 MODEL 8963439 protein-coding Sema4b semaphorin 4B ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); D-2-hydroxyglutaric aciduria 2 (ortholog); FOUND IN glutamatergic synapse (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955416 15107258 15143338 - 102014246 AGCD01017301;AGCD01017302;GBBH01034143;GBDJ01007563;XM_013512481;XM_013512482 XP_013367935;XP_013367936 MODEL 8962134 protein-coding LOC102018487 olfactory receptor 1030-like NW_004955414 23728226 23729164 + 102018487 AGCD01015518;XM_005380523 XP_005380580 MODEL 8885614 pseudo LOC102010862 E3 ubiquitin-protein ligase TRIM23 pseudogene NW_004955405 30595460 30597274 + 102010862 AGCD01005276 MODEL 9030647 protein-coding Prss41 serine protease 41 ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN plasma membrane (ortholog) NW_004955442 14527717 14532265 - 102016754 AGCD01037824;XM_005391405 XP_005391462 MODEL 8802628 protein-coding Bpifb4 BPI fold containing family B member 4 ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase (ortholog); FOUND IN actin cytoskeleton (ortholog); cytosol (ortholog) NW_004955422 28166892 28190403 - 102004398 AGCD01023344;AGCD01023345;GBBH01019084;XM_013513875;XM_013513876 XP_013369329;XP_013369330 MODEL 9051765 protein-coding Vwa7 von Willebrand factor A domain containing 7 ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog) NW_004955437 299554 308609 - 102004752 AGCD01034117;AGCD01034118;GBBH01227762;GBDJ01390262;XM_013516802 XP_013372256 MODEL 8902550 protein-coding Pdzd2 PDZ domain containing 2 ASSOCIATED WITH Developmental Disabilities (ortholog); lissencephaly (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN apical part of cell (ortholog); cell-cell junction (ortholog); centriolar satellite (ortholog) NW_004955426 17600722 17974916 + 102020587 AGCD01026505;AGCD01026506;AGCD01026507;AGCD01026508;AGCD01026509;GBDK01131281;XM_005386151;XM_005386153;XM_013514972;XM_013514973 XP_005386208;XP_005386210;XP_013370426;XP_013370427 MODEL 8841659 protein-coding R3hdm2 R3H domain containing 2 ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955458 4981967 5127409 - 102023559 AGCD01047446;AGCD01047447;AGCD01047448;AGCD01047449;AGCD01047450;AGCD01047451;AGCD01047452;AGCD01047453;AGCD01047454;AGCD01047455;AGCD01047456;GBDK01001499;XM_005397354;XM_005397356;XM_005397358;XM_013520852;XM_013520853;XM_013520854;XM_013520855;XM_013520856;XM_013520857;XM_013520858;XM_013520859;XM_013520860;XM_013520861;XM_013520862 XP_005397411;XP_005397413;XP_005397415;XP_013376306;XP_013376307;XP_013376308;XP_013376309;XP_013376310;XP_013376311;XP_013376312;XP_013376313;XP_013376314;XP_013376315;XP_013376316 MODEL 8859240 ncrna LOC102010457 uncharacterized LOC102010457 NW_004955462 7333301 7356659 - 102010457 AGCD01049301;AGCD01049302;GBDF01308302;XR_001236602;XR_001236603 MODEL 8720045 protein-coding Slc22a4 solute carrier family 22 member 4 ENCODES a protein that exhibits acetylcholine transmembrane transporter activity (ortholog); amino acid transmembrane transporter activity (ortholog); amino-acid betaine transmembrane transporter activity (ortholog); INVOLVED IN acetylcholine uptake (ortholog); amino acid import across plasma membrane (ortholog); carnitine metabolic process (ortholog); PARTICIPATES IN cisplatin response pathway; ASSOCIATED WITH chronic obstructive pulmonary disease (ortholog); Coxsackievirus Infections (ortholog); Enterovirus Infections (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); mitochondrial membrane (ortholog) NW_004955408 3671772 3737946 + 102014984 AGCD01008071;AGCD01008072;AGCD01008073;GBDI01289956;XM_013508300 XP_013363754 MODEL 8728704 protein-coding Rbm8a RNA binding motif protein 8A ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH cataract 46 juvenile-onset (ortholog); Developmental Disabilities (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); dendrite (ortholog); exon-exon junction complex (ortholog) NW_004955568 164050 166162 + 102030678 AGCD01074504;GBDF01051815;XM_005413424 XP_005413481 MODEL 8892147 protein-coding Rgp1 RGP1 homolog, RAB6A GEF complex partner 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN negative regulation of protein catabolic process (ortholog); positive regulation of GTPase activity (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955472 550198 554038 - 102009375 AGCD01053340;GBBH01207777;GBDK01228476;XM_005401008 XP_005401065 MODEL 9053416 ncrna LOC102007849 uncharacterized LOC102007849 NW_004955452 2488589 2501328 + 102007849 AGCD01043896;GBDJ01336024;XR_001236017 MODEL 8964960 protein-coding Pth parathyroid hormone ENCODES a protein that exhibits hormone activity (ortholog); parathyroid hormone receptor binding (ortholog); peptide hormone receptor binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); bone mineralization (ortholog); calcium ion homeostasis (ortholog); PARTICIPATES IN parathyroid hormone signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); anemia (ortholog); Animal Disease Models (ortholog); FOUND IN extracellular space (ortholog) NW_004955414 28828389 28831417 - 102020327 AGCD01015689;GBDF01224218;XM_005380323 XP_005380380 MODEL 8918902 protein-coding Ldlrad3 low density lipoprotein receptor class A domain containing 3 ENCODES a protein that exhibits amyloid-beta binding (ortholog); INVOLVED IN receptor-mediated endocytosis (ortholog); regulation of protein processing (ortholog); ASSOCIATED WITH intellectual disability (ortholog); substance-related disorder (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog) NW_004955422 10206498 10382573 - 102009729 AGCD01022733;AGCD01022734;AGCD01022735;GBDJ01214063;XM_013513831 XP_013369285 MODEL 8909157 pseudo LOC102021455 calcyclin-binding protein pseudogene NW_004955422 12772330 12772978 - 102021455 AGCD01022798 MODEL 8950035 protein-coding Smu1 SMU1 DNA replication regulator and spliceosomal factor INVOLVED IN mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ortholog); FOUND IN nucleus (ortholog); U2-type precatalytic spliceosome (ortholog) NW_004955472 2570248 2600551 + 102011650 AGCD01053474;AGCD01053475;AGCD01053476;AGCD01053477;AGCD01053478;GBCQ01041948;GBDF01050088;XM_005401109 XP_005401166 MODEL 8856723 protein-coding LOC102006354 small ubiquitin-related modifier 2-like NW_004955491 597140 597413 + 102006354 AGCD01060341;XM_005404728;XM_005404729 XP_005404785;XP_005404786 MODEL 8984120 pseudo LOC102023172 transcription elongation factor B polypeptide 1-like NW_004955426 18301576 18302031 - 102023172 AGCD01026519 MODEL 9011211 pseudo LOC102015433 non-histone chromosomal protein HMG-14 pseudogene NW_004955431 1969993 1970549 - 102015433 AGCD01029919 MODEL 8837536 protein-coding Ramp3 receptor activity modifying protein 3 ENCODES a protein that exhibits adrenomedullin receptor activity (ortholog); amylin receptor activity (ortholog); coreceptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adrenomedullin receptor signaling pathway (ortholog); amylin receptor 3 signaling pathway (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); Lymphatic Metastasis (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN adrenomedullin receptor complex (ortholog); amylin receptor complex 3 (ortholog); cell surface (ortholog) NW_004955456 7159845 7168718 - 102014115 AGCD01046391;GBBH01141274;XM_005396645 XP_005396702 MODEL 8731435 protein-coding Phf21a PHD finger protein 21A ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); suckling behavior (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); congenital disorder of glycosylation type IIc (ortholog); genetic disease (ortholog); FOUND IN DNA repair complex (ortholog); histone deacetylase complex (ortholog) NW_004955422 1857335 2045816 + 102012545 AGCD01022475;AGCD01022476;GBDF01089530;XM_005384052;XM_005384053;XM_005384054;XM_013514025;XM_013514026;XM_013514027;XM_013514028;XM_013514029;XM_013514030;XM_013514031;XM_013514032;XM_013514033;XM_013514034;XM_013514035;XM_013514036 XP_005384109;XP_005384110;XP_005384111;XP_013369479;XP_013369480;XP_013369481;XP_013369482;XP_013369483;XP_013369484;XP_013369485;XP_013369486;XP_013369487;XP_013369488;XP_013369489;XP_013369490 MODEL 8760196 protein-coding Rbms1 RNA binding motif single stranded interacting protein 1 ASSOCIATED WITH autistic disorder (ortholog); FOUND IN cytosol (ortholog) NW_004955449 13164306 13368011 + 102025194 AGCD01042131;AGCD01042132;AGCD01042133;AGCD01042134;GBDJ01136799;XM_005393344;XM_005393345;XM_005393346;XM_005393347;XM_005393348 XP_005393401;XP_005393402;XP_005393403;XP_005393404;XP_005393405 MODEL 8808376 ncrna LOC102018876 uncharacterized LOC102018876 NW_004955451 369727 371246 - 102018876 AGCD01042932;GBDF01306894;XR_262565 MODEL 8903326 protein-coding LOC102005320 UDP-glucuronosyltransferase 2B17-like NW_004955447 3893198 3953572 + 102005320 AGCD01040684;AGCD01040685;AGCD01040686;AGCD01040687;AGCD01040688;AGCD01040689;AGCD01040690;GBDJ01074833;XM_005392811;XM_013518530 XP_005392868;XP_013373984 MODEL 8769646 pseudo LOC102011246 rRNA-processing protein FCF1 homolog pseudogene NW_004955438 12170534 12171127 - 102011246 AGCD01035254 MODEL 39131951 snrna U2 U2 spliceosomal RNA 8856418 protein-coding Prss45 Putative serine protease 45 NW_004955420 25400359 25408044 + 102020808 AGCD01021357;GBDJ01287717;XM_005383425;XM_013513623 XP_005383482;XP_013369077 MODEL 8918957 pseudo LOC102012481 uncharacterized LOC102012481 NW_004955446 7640915 7696303 + 102012481 AGCD01040126;AGCD01040127;AGCD01040128 MODEL 9053976 protein-coding Thbd thrombomodulin ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN female pregnancy (ortholog); negative regulation of blood coagulation (ortholog); response to cAMP (ortholog); PARTICIPATES IN protein C anticoagulant pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Liver Failure (ortholog); Acute Lung Injury (ortholog); FOUND IN apicolateral plasma membrane (ortholog); cell surface (ortholog); external side of plasma membrane (ortholog) NW_004955415 30222830 30226406 - 102029285 AGCD01016660;GBCC01028598;XM_005380959 XP_005381016 MODEL 8897956 pseudo LOC102007851 cyclin-G1 pseudogene NW_004955404 47890555 47891422 - 102007851 AGCD01004488 MODEL 8974723 ncrna LOC102009353 uncharacterized LOC102009353 NW_004955408 30404465 30505925 + 102009353 AGCD01008807;AGCD01008808;AGCD01008809;GBDI01286730;XR_001231749;XR_001231750;XR_259727 MODEL 8938779 protein-coding Elmo3 engulfment and cell motility 3 ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog) NW_004955484 9414573 9421255 - 102010808 AGCD01058415;GBDK01048610;XM_005403678;XM_005403679;XM_013503904;XM_013503905 XP_005403735;XP_005403736;XP_013359358;XP_013359359 MODEL 8984426 protein-coding Pcgf3 polycomb group ring finger 3 ENCODES a protein that exhibits histone H2AK119 ubiquitin ligase activity (ortholog); INVOLVED IN random inactivation of X chromosome (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH cherubism (ortholog); Mental Retardation, Autosomal Recessive 53 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); PcG protein complex (ortholog) NW_004955514 307331 350039 + 102007459 AGCD01067006;AGCD01067007;AGCD01067008;GBBH01213986;XM_005408674;XM_005408675;XM_005408676;XM_013506751;XM_013506752 XP_005408731;XP_005408732;XP_005408733;XP_013362205;XP_013362206 MODEL 9043088 protein-coding Ldlrad4 low density lipoprotein receptor class A domain containing 4 ENCODES a protein that exhibits R-SMAD binding (ortholog); INVOLVED IN negative regulation of cell migration (ortholog); negative regulation of epithelial to mesenchymal transition (ortholog); negative regulation of SMAD protein signal transduction (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN early endosome membrane (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955402 384177 508876 - 102010216 AGCD01000017;AGCD01000018;AGCD01000019;AGCD01000020;AGCD01000021;AGCD01000022;AGCD01000023;AGCD01000024;AGCD01000025;AGCD01000026;AGCD01000027;GBBH01041473;GBDI01368625;XM_013512658 XP_013368112 MODEL 10391469 ncrna LOC106146964 uncharacterized LOC106146964 NW_004955508 3830182 3837039 - 106146964 AGCD01065839;XR_001231643 MODEL 8820794 protein-coding Top1mt DNA topoisomerase I mitochondrial ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); FOUND IN mitochondrial nucleoid (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955454 2020884 2045939 - 102027810 AGCD01045000;AGCD01045001;AGCD01045002;GBDJ01349204;XM_005395761;XM_013520028;XM_013520029;XM_013520030;XM_013520032;XR_001236215 XP_005395818;XP_013375482;XP_013375483;XP_013375484;XP_013375486 MODEL 9049206 protein-coding Snrk SNF related kinase ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN protein phosphorylation (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); FOUND IN nucleus (ortholog) NW_004955420 27710536 27754682 - 102012099 AGCD01021458;AGCD01021459;GBBH01227690;GBDK01081580;XM_013513447;XM_013513448 XP_013368901;XP_013368902 MODEL 8769525 protein-coding LOC102006357 cytochrome c oxidase subunit 6A2, mitochondrial ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); mitochondrial complex IV deficiency nuclear type 18 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex IV (ortholog) NW_004955493 8261297 8261961 - 102006357 AGCD01061282;GBCB01005316;XM_005405318 XP_005405375 MODEL 8861867 protein-coding Sema4c semaphorin 4C INVOLVED IN cell migration in hindbrain (ortholog); cerebellum development (ortholog); muscle cell differentiation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); intellectual disability (ortholog); schizophrenia (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog); postsynaptic density membrane (ortholog) NW_004955470 4213006 4220167 - 102023897 AGCD01052728;GBCE01075898;GBDI01172471;XM_013522747 XP_013378201 MODEL 8741443 pseudo LOC102006733 spindle and kinetochore-associated protein 2-like NW_004955403 19423695 19424310 - 102006733 AGCD01002125 MODEL 10140009 ncrna LOC106149793 uncharacterized LOC106149793 NW_004955453 4022338 4028300 - 106149793 AGCD01044672;GBDF01014003;XR_001236188 MODEL 9031396 protein-coding Napsa napsin A aspartic peptidase ENCODES a protein that exhibits endopeptidase activity (ortholog); peptidase activity (ortholog); INVOLVED IN membrane protein proteolysis (ortholog); surfactant homeostasis (ortholog); ASSOCIATED WITH Colorectal Cancer 10 (ortholog); myoepithelioma (ortholog); FOUND IN alveolar lamellar body (ortholog); extracellular space (ortholog); lysosome (ortholog) NW_004955559 769555 777970 + 102022026 AGCD01073611;GBCQ01000420;XM_005412795 XP_005412852 MODEL 8999129 protein-coding Slc9a7 solute carrier family 9 member A7 ENCODES a protein that exhibits potassium:proton antiporter activity (ortholog); sodium:proton antiporter activity (ortholog); INVOLVED IN regulation of Golgi lumen acidification (ortholog); regulation of pH (ortholog); ASSOCIATED WITH autistic disorder (ortholog); immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ortholog); Kabuki Syndrome 2 (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955516 1286070 1428789 + 102025499 AGCD01067422;AGCD01067423;AGCD01067424;AGCD01067425;AGCD01067426;GBDI01080045;XM_005408973;XM_005408975 XP_005409030;XP_005409032 MODEL 8737328 protein-coding Rptor regulatory associated protein of MTOR complex 1 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); enzyme-substrate adaptor activity (ortholog); protein kinase activator activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to glucose stimulus (ortholog); cellular response to L-leucine (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH developmental coordination disorder (ortholog); lung metastasis (ortholog); nicotine dependence (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955506 2009422 2401775 - 102016498 AGCD01065287;AGCD01065288;AGCD01065289;AGCD01065290;AGCD01065291;AGCD01065292;AGCD01065293;AGCD01065294;GBCB01097652;XM_005407317;XM_005407318;XM_013506089 XP_005407374;XP_005407375;XP_013361543 MODEL 8730431 ncrna LOC102024154 uncharacterized LOC102024154 NW_004955515 4883104 4889729 - 102024154 AGCD01067332;GBDF01014882;XR_264527 MODEL 9006037 protein-coding LOC102003590 olfactory receptor 1361-like NW_004955442 14147658 14149906 - 102003590 AGCD01037802;XM_013517700 XP_013373154 MODEL 10214996 protein-coding LOC106149794 cuticle protein 16.5 NW_004955453 7039347 7040936 + 106149794 AGCD01044736;XM_013519979 XP_013375433 MODEL 8808835 protein-coding Rgr retinal G protein coupled receptor ASSOCIATED WITH cone dystrophy (ortholog); fundus dystrophy (ortholog); optic atrophy (ortholog); FOUND IN plasma membrane (ortholog) NW_004955510 3752118 3762251 + 102004738 AGCD01066247;XM_005407884 XP_005407941 MODEL 8711463 protein-coding LOC102017351 olfactory receptor 7D4-like NW_004955495 294354 343997 + 102017351 AGCD01061618;AGCD01061619;AGCD01061620;AGCD01061621;AGCD01061622;AGCD01061623;AGCD01061624;XM_005405554 XP_005405611 MODEL 8968845 protein-coding LOC102011663 olfactory receptor 2T27-like NW_004955418 30179310 30182515 - 102011663 AGCD01019506;XM_013512880 XP_013368334 MODEL 8823539 pseudo LOC102021458 60S ribosomal protein L27 pseudogene NW_004955494 2795835 2796269 - 102021458 AGCD01061451 MODEL 8796332 protein-coding Trnau1ap tRNA selenocysteine 1 associated protein 1 ENCODES a protein that exhibits tRNA binding (ortholog); INVOLVED IN selenocysteine incorporation (ortholog); FOUND IN nucleus (ortholog) NW_004955452 7645715 7663165 + 102017838 AGCD01044179;AGCD01044180;GBDF01189732;XM_005394958 XP_005395015 MODEL 8702555 protein-coding Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 ENCODES a protein that exhibits AMP-activated protein kinase activity (ortholog); ATP binding (ortholog); chromatin binding (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); cellular response to glucose starvation (ortholog); cellular response to glucose stimulus (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Cardiac Fibrosis (ortholog); Cardiomegaly (ortholog); cardiomyopathy (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); ciliary basal body (ortholog) NW_004955464 2996608 3062197 - 102021219 AGCD01049967;AGCD01049968;AGCD01049969;GBCB01001848;XM_005398501;XM_013521596 XP_005398558;XP_013377050 MODEL 8840426 pseudo LOC102023174 band 4.1-like protein 4A NW_004955505 7419575 7423414 + 102023174 AGCD01065207 MODEL 8912778 pseudo LOC102010116 oxysterol-binding protein-related protein 8-like NW_004955648 80516 86972 - 102010116 AGCD01077770 MODEL 8942927 protein-coding Sprtn SprT-like N-terminal domain ENCODES a protein that exhibits double-stranded DNA binding (ortholog); K63-linked polyubiquitin modification-dependent protein binding (ortholog); metalloendopeptidase activity (ortholog); INVOLVED IN DNA damage response (ortholog); interstrand cross-link repair (ortholog); positive regulation of protein ubiquitination (ortholog); ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); Asthenozoospermia (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN chromatin (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955492 7463228 7476683 - 102007440 AGCD01060798;GBDF01044538;XM_005404971;XM_013504683;XM_013504684;XM_013504685;XM_013504686 XP_005405028;XP_013360137;XP_013360138;XP_013360139;XP_013360140 MODEL 8882092 ncrna LOC102015436 uncharacterized LOC102015436 NW_004955517 1432841 1436327 - 102015436 AGCD01067597;GBDK01244529;XR_001231817;XR_001231818 MODEL 8864507 protein-coding Elmod1 ELMO domain containing 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN cilium assembly (ortholog); protein localization (ortholog); protein transport (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); FOUND IN cilium (ortholog); glutamatergic synapse (ortholog); Golgi apparatus (ortholog) NW_004955412 9975110 10013932 + 102028513 AGCD01012753;AGCD01012754;GBCE01023906;GBDI01135314;XM_013511123 XP_013366577 MODEL 9039797 protein-coding Pak2 p21 (RAC1) activated kinase 2 ENCODES a protein that exhibits identical protein binding (ortholog); protein kinase activity (ortholog); protein kinase binding (ortholog); INVOLVED IN adherens junction assembly (ortholog); bicellular tight junction assembly (ortholog); cardiac muscle hypertrophy (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955420 12893760 12930955 + 102015204 AGCD01020904;AGCD01020905;GBDF01053291;XM_005383142 XP_005383199 MODEL 39131955 snorna SNORA75 Small nucleolar RNA SNORA75 8843810 protein-coding LOC102010459 potassium channel subfamily U member 1-like NW_004955463 12698574 12705738 + 102010459 AGCD01049856;AGCD01049857;GBBH01200395;XM_005398408 XP_005398465 MODEL 8736772 protein-coding Rbms2 RNA binding motif single stranded interacting protein 2 ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); INTERSTITIAL LUNG AND LIVER DISEASE (ortholog) NW_004955458 4104124 4149120 + 102010873 AGCD01047371;AGCD01047372;AGCD01047373;AGCD01047374;AGCD01047375;AGCD01047376;AGCD01047377;AGCD01047378;AGCD01047379;GBCB01019880;XM_005397318;XM_005397319;XM_013520869;XM_013520870;XM_013520871;XM_013520872 XP_005397375;XP_005397376;XP_013376323;XP_013376324;XP_013376325;XP_013376326 MODEL 9025630 protein-coding Slc22a6 solute carrier family 22 member 6 ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); antiporter activity (ortholog); chloride ion binding (ortholog); INVOLVED IN alpha-ketoglutarate transport (ortholog); metanephric proximal tubule development (ortholog); monoatomic anion transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH calcinosis (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN basal plasma membrane (ortholog); basolateral plasma membrane (ortholog); caveola (ortholog) NW_004955599 302026 307503 + 102003713 AGCD01076637;GBCQ01008752;XM_005414753;XM_013510035 XP_005414810;XP_013365489 MODEL 8773292 protein-coding LOC102018880 uncharacterized protein C1orf43 NW_004956345 1240 4569 - 102018880 AGCD01079460;GBDF01045162;GBDI01007030;XM_005415197 XP_005415254 MODEL 8955422 protein-coding Polh DNA polymerase eta ENCODES a protein that exhibits DNA-directed DNA polymerase activity (ortholog); INVOLVED IN cellular response to UV-C (ortholog); DNA synthesis involved in DNA repair (ortholog); postreplication repair (ortholog); ASSOCIATED WITH breast cancer (ortholog); female breast cancer (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955437 9392484 9409186 + 102020609 AGCD01034528;AGCD01034529;GBDF01124027;GBDK01171313;XM_013516824;XM_013516825;XM_013516826 XP_013372278;XP_013372279;XP_013372280 MODEL 8910084 protein-coding Vwa8 von Willebrand factor A domain containing 8 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Developmental Disabilities (ortholog); orofacial cleft (ortholog); FOUND IN mitochondrion (ortholog); peroxisome (ortholog) NW_004955518 4351781 4723479 + 102028887 AGCD01067827;AGCD01067828;AGCD01067829;AGCD01067830;AGCD01067831;AGCD01067832;AGCD01067833;AGCD01067834;AGCD01067835;AGCD01067836;GBCB01043083;GBDI01292258;XM_013506956 XP_013362410 MODEL 8804250 protein-coding Pitpnm1 phosphatidylinositol transfer protein membrane associated 1 ENCODES a protein that exhibits calcium ion binding (ortholog); phosphatidic acid binding (ortholog); phosphatidylcholine binding (ortholog); INVOLVED IN phospholipid transport (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); immunodeficiency 90 (ortholog); intellectual disability (ortholog); FOUND IN cell body (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955422 17985698 17997204 + 102015532 AGCD01022934;GBDF01046509;GBDI01075310;XM_005384318;XM_005384319;XM_005384320 XP_005384375;XP_005384376;XP_005384377 MODEL 8782846 protein-coding Plekho1 pleckstrin homology domain containing O1 INVOLVED IN lamellipodium morphogenesis (ortholog); myoblast fusion (ortholog); myoblast migration (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN muscle cell projection membrane (ortholog); ruffle membrane (ortholog) NW_004955413 603011 606487 - 102012525 AGCD01013481;GBDF01000598;GBDK01001593;XM_013511531 XP_013366985 MODEL 8823222 protein-coding LOC102008222 olfactory receptor 50-like NW_004955419 5484750 5485697 - 102008222 AGCD01019814;XM_005382529 XP_005382586 MODEL 8919046 protein-coding LOC102018488 uncharacterized LOC102018488 NW_004955473 10382694 10390790 - 102018488 AGCD01054094;GBDF01014963;XM_005401278 XP_005401335 MODEL 8825967 protein-coding Slc35f6 solute carrier family 35 member F6 INVOLVED IN negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH Tatton-Brown-Rahman syndrome (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); lysosomal membrane (ortholog) NW_004955469 8774225 8787549 + 102015500 AGCD01052481;AGCD01052482;GBDF01281490;XM_005400439 XP_005400496 MODEL 8841591 protein-coding Ldlrap1 low density lipoprotein receptor adaptor protein 1 ENCODES a protein that exhibits amyloid-beta binding (ortholog); AP-1 adaptor complex binding (ortholog); AP-2 adaptor complex binding (ortholog); INVOLVED IN amyloid precursor protein metabolic process (ortholog); cellular response to cytokine stimulus (ortholog); cholesterol homeostasis (ortholog); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); familial hypercholesterolemia (ortholog); Hypercholesterolemia (ortholog); FOUND IN axon (ortholog); basal plasma membrane (ortholog); cytoplasm (ortholog) NW_004955452 5081919 5102349 + 102016443 AGCD01044010;AGCD01044011;GBCE01032145;GBDI01002270;XM_013519648 XP_013375102 MODEL 8754672 trna Trnav-aac transfer RNA valine (anticodon AAC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978798 AGCD01020530;AGCD01050590;AGCD01050597;AGCD01050600;AGCD01057602;AGCD01069830;AGCD01071614 MODEL 8786628 protein-coding LOC102021461 tubulin alpha-1C chain-like NW_004955499 193636 205355 + 102021461 AGCD01063193;AGCD01063194;AGCD01063195;AGCD01063196;AGCD01063197;XM_013505550 XP_013361004 MODEL 9037542 protein-coding LOC102010123 uncharacterized LOC102010123 NW_004955406 1259242 1295310 - 102010123 AGCD01005629;AGCD01005630;GBCQ01057585;XM_013503029 XP_013358483 MODEL 9055653 pseudo LOC102011252 coiled-coil domain-containing protein 94 pseudogene NW_004955549 1407026 1453477 + 102011252 AGCD01072448;AGCD01072449 MODEL 8845759 protein-coding LOC102012483 olfactory receptor 2B2-like NW_004955576 1406995 1407939 + 102012483 AGCD01075375;XM_005413956 XP_005414013 MODEL 8932390 protein-coding Elmod2 ELMO domain containing 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN regulation of defense response to virus (ortholog); ASSOCIATED WITH long QT syndrome (ortholog) NW_004955428 3289593 3308927 - 102013315 AGCD01027652;GBCQ01127045;XM_005386672;XM_005386673 XP_005386729;XP_005386730 MODEL 8913500 protein-coding Sema4d semaphorin 4D ENCODES a protein that exhibits identical protein binding (ortholog); receptor ligand activity (ortholog); semaphorin receptor binding (ortholog); INVOLVED IN axonogenesis (ortholog); bone trabecula morphogenesis (ortholog); leukocyte aggregation (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); extracellular space (ortholog) NW_004955515 2573816 2676387 + 102016085 AGCD01067257;AGCD01067258;AGCD01067259;GBCB01020045;GBCQ01041776;XM_005408875;XM_005408877 XP_005408932;XP_005408934 MODEL 8841217 pseudo LOC102010460 40S ribosomal protein S14 pseudogene NW_004955463 13024771 13025227 - 102010460 AGCD01049860 MODEL 8788630 protein-coding Pth1r parathyroid hormone 1 receptor ENCODES a protein that exhibits parathyroid hormone receptor activity (ortholog); peptide hormone binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); bone mineralization (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; G protein mediated signaling pathway via Galphas family; parathyroid hormone signaling pathway; ASSOCIATED WITH brachydactyly type E1 (ortholog); chondrodysplasia Blomstrand type (ortholog); connective tissue disease (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog) NW_004955420 25274269 25291984 - 102019506 AGCD01021348;GBDF01221234;XM_013513585 XP_013369039 MODEL 8753395 protein-coding LOC102007853 uncharacterized LOC102007853 NW_004955406 41658569 41676699 + 102007853 AGCD01006688;GBDK01152399;XM_005375483 XP_005375540 MODEL 8976744 protein-coding Pak3 p21 (RAC1) activated kinase 3 ENCODES a protein that exhibits GTPase binding (ortholog); MAP kinase kinase activity (ortholog); protein kinase activity (ortholog); INVOLVED IN axonogenesis (ortholog); dendrite development (ortholog); dendritic spine development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); developmental and epileptic encephalopathy 36 (ortholog); FOUND IN endosome (ortholog); glutamatergic synapse (ortholog); postsynaptic density (ortholog) NW_004955490 4538933 4833851 - 102006037 AGCD01060188;AGCD01060189;AGCD01060190;AGCD01060191;GBCE01183154;XM_013504544;XM_013504545;XM_013504546;XM_013504547;XM_013504548;XM_013504549 XP_013359998;XP_013359999;XP_013360000;XP_013360001;XP_013360002;XP_013360003 MODEL 9017910 pseudo LOC102003591 etoposide-induced protein 2.4 homolog pseudogene NW_004955442 5873690 5874760 - 102003591 AGCD01037571 MODEL 9005840 protein-coding Osbp2 oxysterol binding protein 2 ENCODES a protein that exhibits cholesterol binding (ortholog); INVOLVED IN spermatid development (ortholog); ASSOCIATED WITH cholangiocarcinoma (ortholog); FOUND IN acrosomal vesicle (ortholog); apical dendrite (ortholog) NW_004955455 4928153 5110178 + 102025872 AGCD01045707;AGCD01045708;AGCD01045709;AGCD01045710;AGCD01045711;AGCD01045712;AGCD01045713;AGCD01045714;AGCD01045715;AGCD01045716;AGCD01045717;AGCD01045718;GBDF01160591;XM_005396279;XM_005396280;XM_005396281;XM_013520327 XP_005396336;XP_005396337;XP_005396338;XP_013375781 MODEL 9037771 pseudo LOC102017352 heterogeneous nuclear ribonucleoprotein K pseudogene NW_004955423 5154401 5156628 + 102017352 AGCD01023556;XR_261018 MODEL 9048651 protein-coding Plekho2 pleckstrin homology domain containing O2 INVOLVED IN macrophage apoptotic process (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); nemaline myopathy 6 (ortholog) NW_004955450 10692305 10714031 - 102015262 AGCD01042632;GBCE01154962;XM_005393747 XP_005393804 MODEL 9027750 pseudo LOC102011675 BTB/POZ domain-containing protein KCTD3 pseudogene NW_004955422 13339184 13342304 + 102011675 AGCD01022821 MODEL 8728678 protein-coding Ran RAN, member RAS oncogene family ENCODES a protein that exhibits dynein intermediate chain binding (ortholog); G protein activity (ortholog); GDP binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cellular response to mineralocorticoid stimulus (ortholog); GTP metabolic process (ortholog); PARTICIPATES IN CRM1 export pathway; microRNA pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN centriole (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955482 1222944 1223891 - 102029862 AGCD01057206;GBCQ01009220;GBDF01002060;XM_005402988 XP_005403045 MODEL 9032403 protein-coding Rpusd1 RNA pseudouridine synthase domain containing 1 ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); prostate cancer (ortholog) NW_004955442 16423526 16426623 + 102014183 AGCD01037900;GBBH01006331;XM_005391598;XM_005391599 XP_005391655;XP_005391656 MODEL 10072503 ncrna LOC106146965 uncharacterized LOC106146965 NW_004955508 1976516 1981149 + 106146965 AGCD01065778;GBDJ01301658;XR_001231645 MODEL 8957179 protein-coding Pcgf5 polycomb group ring finger 5 ENCODES a protein that exhibits histone H2AK119 ubiquitin ligase activity (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); random inactivation of X chromosome (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN centrosome (ortholog); Golgi apparatus (ortholog); nucleoplasm (ortholog) NW_004955425 1913711 1980800 - 102008959 AGCD01025249;GBCB01043679;XM_013514859;XM_013514860;XM_013514861;XM_013514862;XM_013514863;XR_001234288 XP_013370313;XP_013370314;XP_013370315;XP_013370316;XP_013370317 MODEL 9041304 protein-coding R3hdm4 R3H domain containing 4 ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog); Peutz-Jeghers syndrome (ortholog) NW_004955495 6926619 6936128 + 102018508 AGCD01062103;AGCD01062104;GBDJ01079366;GBDK01218961;XM_013505107 XP_013360561 MODEL 8891653 protein-coding Pdzd4 PDZ domain containing 4 ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog) NW_004955580 512963 535911 - 102019753 AGCD01075607;AGCD01075608;GBDJ01144360;XM_005414155;XM_005414156;XM_005414157 XP_005414212;XP_005414213;XP_005414214 MODEL 9016744 protein-coding LOC102015439 acyl-coenzyme A thioesterase 1-like NW_004955523 1749817 1868724 - 102015439 AGCD01068541;AGCD01068542;AGCD01068543;AGCD01068544;AGCD01068545;AGCD01068546;AGCD01068547;AGCD01068548;AGCD01068549;GBCB01023483;GBDJ01018057;XM_005409472 XP_005409529 MODEL 8743108 protein-coding Ldoc1 LDOC1 regulator of NFKB signaling INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to muramyl dipeptide (ortholog); maternal placenta development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955539 127705 129147 + 102018980 AGCD01071181;GBDF01086281;XM_005410901 XP_005410958 MODEL 8923336 protein-coding Spry1 sprouty RTK signaling antagonist 1 INVOLVED IN bud elongation involved in lung branching (ortholog); epithelial to mesenchymal transition involved in cardiac fibroblast development (ortholog); ERK1 and ERK2 cascade (ortholog); ASSOCIATED WITH genetic disease (ortholog); neurodevelopmental disorder with hearing loss, seizures, and brain abnormalities (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); nucleoplasm (ortholog) NW_004955428 17451703 17455695 - 102010288 AGCD01028042;GBCE01054093;GBDK01137505;XM_005386752 XP_005386809 MODEL 39131483 protein-coding THBD thrombomodulin 8957766 protein-coding Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 ENCODES a protein that exhibits DNA N-glycosylase activity (ortholog); identical protein binding (ortholog); oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity (ortholog); INVOLVED IN base-excision repair (ortholog); DNA repair (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); prostate cancer (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); nucleolus (ortholog) NW_004955458 1432988 1449019 - 102030502 AGCD01047179;AGCD01047180;GBCQ01129502;XM_005397208;XM_013521018;XM_013521019 XP_005397265;XP_013376472;XP_013376473 MODEL 8805524 protein-coding Trim15 tripartite motif containing 15 ENCODES a protein that exhibits molecular sequestering activity (ortholog); transcription coactivator activity (ortholog); INVOLVED IN innate immune response (ortholog); negative regulation of intracellular transport of viral material (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH megacolon (ortholog); FOUND IN nucleus (ortholog) NW_004955583 277564 283422 + 102029919 AGCD01075808;XM_013509792 XP_013365246 MODEL 9036914 pseudo LOC102009355 transcription elongation factor B polypeptide 1 pseudogene NW_004955459 15151409 15153569 + 102009355 AGCD01048312 MODEL 9039248 protein-coding Rpusd2 RNA pseudouridine synthase domain containing 2 ENCODES a protein that exhibits pseudouridine synthase activity (ortholog); INVOLVED IN mRNA pseudouridine synthesis (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog) NW_004955416 7482226 7485654 + 102022282 AGCD01016984;GBDF01058049;XM_005381243 XP_005381300 MODEL 9026813 protein-coding Vwc2 von Willebrand factor C domain containing 2 INVOLVED IN negative regulation of BMP signaling pathway (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); basement membrane (ortholog); extracellular matrix (ortholog) NW_004955456 3949885 4075622 - 102006099 AGCD01046288;GBDI01379282;XM_013520509 XP_013375963 MODEL 8915912 protein-coding Slc9a8 solute carrier family 9 member A8 ENCODES a protein that exhibits potassium:proton antiporter activity (ortholog); sodium:proton antiporter activity (ortholog); INVOLVED IN acrosome assembly (ortholog); proton transmembrane transport (ortholog); regulation of Golgi lumen acidification (ortholog); ASSOCIATED WITH dementia (ortholog); FOUND IN acrosomal vesicle (ortholog); apical plasma membrane (ortholog); Golgi membrane (ortholog) NW_004955445 8308847 8384146 - 102003914 AGCD01039577;AGCD01039578;AGCD01039579;AGCD01039580;GBBH01062722;GBCB01056479;XM_005392327;XM_013518263 XP_005392384;XP_013373717 MODEL 10293041 ncrna LOC106149795 uncharacterized LOC106149795 NW_004955453 6959138 6961877 + 106149795 AGCD01044734;XR_001236191 MODEL 8785843 protein-coding Rgs1 regulator of G protein signaling 1 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); leukotriene signaling pathway (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); Arsenic Poisoning (ortholog); COVID-19 (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog) NW_004955406 30042354 30047172 + 102017535 AGCD01006357;GBDK01060690;XM_005375098 XP_005375155 MODEL 9046561 ncrna LOC102006358 uncharacterized LOC102006358 NW_004955494 958163 966632 + 102006358 AGCD01061389;GBDI01027847;XR_264101 MODEL 8868221 ncrna LOC102023175 uncharacterized LOC102023175 NW_004955506 5745218 5748375 - 102023175 AGCD01065386;GBDF01077418;XR_001231603;XR_264360 MODEL 8744015 ncrna LOC102005321 uncharacterized LOC102005321 NW_004955575 1196092 1210167 + 102005321 AGCD01075234;GBDF01148249;XR_265071 MODEL 8896208 trna Trnav-cac transfer RNA valine (anticodon CAC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978801 AGCD01050589;AGCD01052199;AGCD01057606;AGCD01061910;AGCD01069830;AGCD01076044;AGCD01080385 MODEL 39131954 snorna SNORA75 Small nucleolar RNA SNORA75 8927295 protein-coding LOC102006734 cathelin-like NW_004956037 8257 8882 - 102006734 AGCD01078923;GBCE01101299;XM_013510217 XP_013365671 MODEL 8941664 protein-coding Prkab1 protein kinase AMP-activated non-catalytic subunit beta 1 ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); nail development (ortholog); positive regulation of cold-induced thermogenesis (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH anuria (ortholog); Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN nucleotide-activated protein kinase complex (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955455 11877407 11889987 - 102016235 AGCD01046021;GBCB01038378;XM_005396524;XM_005396525 XP_005396581;XP_005396582 MODEL 8804822 protein-coding U2af1 U2 small nuclear RNA auxiliary factor 1 ENCODES a protein that exhibits RS domain binding (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH cataract 9 multiple types (ortholog); developmental and epileptic encephalopathy 30 (ortholog); homocystinuria (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955407 38895741 38909820 + 102005108 AGCD01007813;AGCD01007814;GBBH01031743;XM_005375793;XM_005375794;XM_013505025 XP_005375850;XP_005375851;XP_013360479 MODEL 8706800 protein-coding LOC102018881 keratin, type I cytoskeletal 28 NW_004955451 15254864 15264012 - 102018881 AGCD01043603;AGCD01043604;GBDK01170754;XM_005394373 XP_005394430 MODEL 9055392 protein-coding LOC102024155 zinc finger protein 709-like NW_004955432 4485530 4494277 + 102024155 AGCD01030722;AGCD01030723;GBDF01195694;XM_013515914 XP_013371368 MODEL 8899113 protein-coding LOC102011255 leukocyte immunoglobulin-like receptor subfamily A member 5 NW_004955567 1233166 1237734 - 102011255 AGCD01074465;GBDF01000430;XM_005413374 XP_005413431 MODEL 8915487 pseudo LOC102012486 histone H3.1-like NW_004955581 100297 101951 + 102012486 AGCD01075657 MODEL 8820691 protein-coding Poli DNA polymerase iota ENCODES a protein that exhibits DNA-directed DNA polymerase activity (ortholog); INVOLVED IN cellular response to UV-C (ortholog); translesion synthesis (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); nuclear speck (ortholog) NW_004955402 38866528 38891235 + 102024741 AGCD01000971;GBDI01226624;XM_013510810;XM_013510820 XP_013366264;XP_013366274 MODEL 8707116 protein-coding Bpifb6 BPI fold containing family B member 6 ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase (ortholog) NW_004955422 28214188 28224604 - 102004396 AGCD01023345;GBDF01181601;XM_005384854 XP_005384911 MODEL 8839737 protein-coding LOC102007856 uncharacterized protein C3orf26 homolog NW_004955407 20972503 20976017 - 102007856 AGCD01007347;XM_013505935 XP_013361389 MODEL 8891143 pseudo LOC102008226 voltage-dependent anion-selective channel protein 1-like NW_004955419 25137127 25158946 + 102008226 AGCD01020373;AGCD01020374 MODEL 8707093 ncrna LOC102003597 uncharacterized LOC102003597 NW_004955447 15301309 15312329 + 102003597 AGCD01041045;GBDF01277712;XR_262434 MODEL 8743746 ncrna LOC102018490 uncharacterized LOC102018490 NW_004955415 16685821 16705592 + 102018490 AGCD01016391;AGCD01016392;AGCD01016393;GBDF01076606;XR_260300 MODEL 8755196 protein-coding Phf21b PHD finger protein 21B ASSOCIATED WITH intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog) NW_004955413 29442357 29507060 - 102026849 AGCD01014584;AGCD01014585;AGCD01014586;GBDJ01390489;XM_005379472;XM_005379473;XM_005379474 XP_005379529;XP_005379530;XP_005379531 MODEL 8769250 protein-coding Sema4f ssemaphorin 4F INVOLVED IN axon guidance (ortholog); negative regulation of axon extension (ortholog); retinal ganglion cell axon guidance (ortholog); ASSOCIATED WITH malignant mesothelioma (ortholog); FOUND IN endoplasmic reticulum (ortholog); glutamatergic synapse (ortholog); membrane (ortholog) NW_004955424 11123326 11152909 - 102020136 AGCD01024549;AGCD01024550;GBDK01316796;XM_005385478;XM_005385479;XM_005385480;XM_005385481 XP_005385535;XP_005385536;XP_005385537;XP_005385538 MODEL 9021605 protein-coding Pak4 p21 (RAC1) activated kinase 4 ENCODES a protein that exhibits protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN dendritic spine development (ortholog); negative regulation of endothelial cell apoptotic process (ortholog); positive regulation of angiogenesis (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH clear cell renal cell carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); hereditary breast ovarian cancer syndrome (ortholog) NW_004955468 368721 417614 - 102027058 AGCD01051693;AGCD01051694;AGCD01051695;AGCD01051696;GBDK01015461;XM_005399791;XM_005399792 XP_005399848;XP_005399849 MODEL 8850238 protein-coding Osbpl10 oxysterol binding protein like 10 ENCODES a protein that exhibits cholesterol binding (ortholog); phosphatidylserine binding (ortholog) NW_004955430 23084618 23383253 - 102024489 AGCD01029808;AGCD01029809;AGCD01029810;AGCD01029811;AGCD01029812;AGCD01029813;AGCD01029814;AGCD01029815;AGCD01029816;AGCD01029817;GBDI01105499;XM_005387523;XM_005387524;XM_013515705 XP_005387580;XP_005387581;XP_013371159 MODEL 153211029 protein-coding PLEKHO2 pleckstrin homology domain containing O2 8832531 protein-coding Top2a DNA topoisomerase II alpha ENCODES a protein that exhibits ATP binding (ortholog); ATP-dependent activity, acting on DNA (ortholog); chromatin binding (ortholog); INVOLVED IN apoptotic chromosome condensation (ortholog); cerebellar granule cell differentiation (ortholog); cerebellar Purkinje cell differentiation (ortholog); PARTICIPATES IN doxorubicin pharmacodynamics pathway; etoposide pharmacodynamics pathway; etoposide pharmacokinetics pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); adenoid cystic carcinoma (ortholog); adrenocortical carcinoma (ortholog); FOUND IN centriole (ortholog); chromosome, centromeric region (ortholog); condensed chromosome (ortholog) NW_004955451 14928273 14964855 - 102021727 AGCD01043584;AGCD01043585;AGCD01043586;AGCD01043587;AGCD01043588;AGCD01043589;GBBH01012210;GBDI01224195;XM_013519327 XP_013374781 MODEL 8845963 protein-coding Prss48 serine protease 48 ASSOCIATED WITH essential tremor (ortholog) NW_004955471 5856588 5872812 + 102022911 AGCD01053114;GBDF01046234;XM_013522888 XP_013378342 MODEL 8848985 ncrna LOC102010124 uncharacterized LOC102010124 NW_004955406 8915324 8930814 + 102010124 AGCD01005810;GBDF01157210;XR_259486 MODEL 8997546 pseudo LOC102021462 translocation protein SEC62 pseudogene NW_004955425 16717873 16720163 - 102021462 AGCD01025619;XM_005386094 MODEL 8982275 pseudo LOC102005322 tubulin beta chain-like NW_004955402 252450 252882 - 102005322 AGCD01000015 MODEL 8826063 protein-coding R3hdml R3H domain containing like ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog) NW_004955445 12991667 13004174 - 102018663 AGCD01039766;GBCQ01049962;XM_005392473 XP_005392530 MODEL 8815701 ncrna LOC102010866 uncharacterized LOC102010866 NW_004955454 15132762 15145904 + 102010866 AGCD01045485;AGCD01045486;GBDF01016961;XR_001236261;XR_001236262 MODEL 8803414 protein-coding Sema4g semaphorin 4G NW_004955485 9201078 9211100 - 102004936 AGCD01058752;GBBH01006973;GBCQ01000916;XM_005403895 XP_005403952 MODEL 8762010 protein-coding Pcgf6 polycomb group ring finger 6 INVOLVED IN chromatin remodeling (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); FOUND IN nucleus (ortholog); PcG protein complex (ortholog); PRC1 complex (ortholog) NW_004955485 7196626 7228918 + 102005599 AGCD01058643;AGCD01058644;AGCD01058645;AGCD01058646;AGCD01058647;AGCD01058648;GBCB01109610;GBDF01156121;XM_005403806 XP_005403863 MODEL 8949240 protein-coding Pdzd7 PDZ domain containing 7 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN auditory receptor cell development (ortholog); auditory receptor cell stereocilium organization (ortholog); detection of mechanical stimulus involved in sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 57 (ortholog); fundus dystrophy (ortholog); FOUND IN ciliary basal body (ortholog); cilium (ortholog); nucleoplasm (ortholog) NW_004955485 9166721 9183129 + 102004167 AGCD01058750;GBCE01166839;GBDJ01214323;XM_013504049;XM_013504050;XM_013504051;XR_001231080 XP_013359503;XP_013359504;XP_013359505 MODEL 8888147 protein-coding U2af2 U2 small nuclear RNA auxiliary factor 2 ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); enzyme binding (ortholog); molecular function inhibitor activity (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); negative regulation of mRNA splicing, via spliceosome (ortholog); negative regulation of protein ubiquitination (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH developmental delay, dysmorphic facies, and brain anomalies (ortholog); genetic disease (ortholog); leukodystrophy (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog); Prp19 complex (ortholog) NW_004955567 683472 699105 - 102013226 AGCD01074424;AGCD01074425;GBDJ01002993;XM_005413290;XM_005413291 XP_005413347;XP_005413348 MODEL 8799074 ncrna LOC102009360 uncharacterized LOC102009360 NW_004955410 29294602 29317106 + 102009360 AGCD01011281;AGCD01011282;GBCQ01057489;XR_001232714 MODEL 8744818 protein-coding LOC102011261 vomeronasal type-1 receptor 4-like NW_004955584 575353 576579 - 102011261 AGCD01075948;XM_005414368 XP_005414425 MODEL 8940744 protein-coding Thbs1 thrombospondin 1 ENCODES a protein that exhibits collagen V binding (ortholog); endopeptidase inhibitor activity (ortholog); extracellular matrix binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); blood vessel morphogenesis (ortholog); cell migration (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Bloom syndrome (ortholog); Breast Neoplasms (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum (ortholog); external side of plasma membrane (ortholog) NW_004955416 6490034 6506419 + 102010897 AGCD01016946;GBBH01143942;XM_013512591 XP_013368045 MODEL 8721807 ncrna LOC102012487 uncharacterized LOC102012487 NW_004955449 15407328 15451351 + 102012487 AGCD01042194;XR_262507 MODEL 8741089 protein-coding LOC102017358 fatty acid-binding protein, liver-like NW_004955424 740636 747834 - 102017358 AGCD01024204;AGCD01024205;GBCB01092993;XM_013514585 XP_013370039 MODEL 8989355 protein-coding Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 ENCODES a protein that exhibits helicase activity (ortholog); identical protein binding (ortholog); RNA helicase activity (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cilium (ortholog); nucleoplasm (ortholog) NW_004955470 3828943 3856059 - 102016149 AGCD01052712;GBCQ01004600;XM_005400656 XP_005400713 MODEL 8940666 pseudo LOC102003598 SRSF protein kinase 1 pseudogene NW_004955447 5510865 5512873 + 102003598 AGCD01040759 MODEL 10211981 ncrna LOC106146966 uncharacterized LOC106146966 NW_004955508 2001597 2004170 - 106146966 AGCD01065779;GBDF01113013;XR_001231646 MODEL 8840593 protein-coding Narf nuclear prelamin A recognition factor ENCODES a protein that exhibits lamin binding (ortholog); ASSOCIATED WITH generalized epilepsy (ortholog); FOUND IN lamin filament (ortholog); nuclear lumen (ortholog); nucleolus (ortholog) NW_004955506 636533 657561 - 102007354 AGCD01065234;GBCB01025477;XM_005407190;XM_005407191;XM_005407192 XP_005407247;XP_005407248;XP_005407249 MODEL 9030817 protein-coding Phf23 PHD finger protein 23 INVOLVED IN negative regulation of autophagosome assembly (ortholog); negative regulation of autophagosome maturation (ortholog); positive regulation of protein ubiquitination (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955467 9671133 9675434 + 102026514 AGCD01051521;GBDJ01230131;XM_005399540;XM_005399541 XP_005399597;XP_005399598 MODEL 150537111 snorna SNORA79 small nucleolar RNA, H/ACA box 79 8796911 protein-coding LOC102015452 chromosome unknown open reading frame, human C14orf132 ASSOCIATED WITH acute myeloid leukemia (ortholog); essential thrombocythemia (ortholog); myelofibrosis (ortholog) NW_004955438 16628879 16662868 - 102015452 AGCD01035422;GBCE01114226;XM_013517248 XP_013372702 MODEL 8789774 protein-coding Leap2 liver enriched antimicrobial peptide 2 INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955408 4245574 4247117 + 102007086 AGCD01008099;GBDI01279296;XM_005376120 XP_005376177 MODEL 8750985 protein-coding Spry2 sprouty RTK signaling antagonist 2 ENCODES a protein that exhibits molecular function inhibitor activity (ortholog); protein kinase binding (ortholog); protein serine/threonine kinase activator activity (ortholog); INVOLVED IN branching morphogenesis of an epithelial tube (ortholog); bud elongation involved in lung branching (ortholog); cell fate commitment (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH achalasia (ortholog); chromosome 13q14 deletion syndrome (ortholog); ciliopathy (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoskeleton (ortholog); cytosol (ortholog) NW_004955404 27349286 27353706 + 102007497 AGCD01003924;AGCD01003925;GBBH01227874;GBDJ01272981;XM_005374123 XP_005374180 MODEL 8878325 protein-coding LOC102024157 vomeronasal type-2 receptor 116-like NW_004955524 574634 590185 - 102024157 AGCD01068685;XM_013507187 XP_013362641 MODEL 8899453 protein-coding Pitpnm2 phosphatidylinositol transfer protein membrane associated 2 ENCODES a protein that exhibits calcium ion binding (ortholog); phosphatidylinositol transfer activity (ortholog); receptor tyrosine kinase binding (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN cell body (ortholog) NW_004955482 5670827 5804037 + 102022702 AGCD01057345;AGCD01057346;AGCD01057347;AGCD01057348;GBDF01155373;XM_005403054;XM_005403055;XM_013503659;XM_013503660;XM_013503661 XP_005403111;XP_005403112;XP_013359113;XP_013359114;XP_013359115 MODEL 9015813 protein-coding Pth2 parathyroid hormone 2 ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog) NW_004955559 1409966 1414881 + 102017514 AGCD01073644;GBDF01104303;XM_005412886;XM_013509049 XP_005412943;XP_013364503 MODEL 8962314 protein-coding Smurf1 SMAD specific E3 ubiquitin protein ligase 1 ENCODES a protein that exhibits activin receptor binding (ortholog); I-SMAD binding (ortholog); R-SMAD binding (ortholog); INVOLVED IN autophagy (ortholog); BMP signaling pathway (ortholog); cell differentiation (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Cocaine-Related Disorders (ortholog); pleomorphic xanthoastrocytoma (ortholog); Spinal Cord Injuries (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); mitochondrion (ortholog) NW_004955460 14774545 14860783 - 102025442 AGCD01048760;AGCD01048761;GBDJ01276937;XM_013521235;XM_013521236;XM_013521237;XM_013521238;XM_013521239 XP_013376689;XP_013376690;XP_013376691;XP_013376692;XP_013376693 MODEL 8988961 protein-coding Slc35g1 solute carrier family 35 member G1 INVOLVED IN calcium ion export across plasma membrane (ortholog); regulation of cytosolic calcium ion concentration (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955507 423354 428051 + 102004094 AGCD01065472;GBBH01041247;XM_013506161 XP_013361615 MODEL 9010540 protein-coding Trim16 tripartite motif containing 16 ENCODES a protein that exhibits DNA binding (ortholog); interleukin-1 binding (ortholog); NACHT domain binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); positive regulation of interleukin-1 beta production (ortholog); positive regulation of keratinocyte differentiation (ortholog); ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955467 2059793 2084221 + 102018703 AGCD01051300;GBCE01172297;XM_005399325 XP_005399382 MODEL 9054254 protein-coding Rpusd3 RNA pseudouridine synthase D3 INVOLVED IN mRNA pseudouridine synthesis (ortholog); positive regulation of mitochondrial translation (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); genetic disease (ortholog); long QT syndrome (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); ribonucleoprotein granule (ortholog) NW_004955561 1358003 1361634 - 102009998 AGCD01073851;GBDI01080735;XM_005413036;XM_005413037;XM_005413038;XM_013509112 XP_005413093;XP_005413094;XP_005413095;XP_013364566 MODEL 8825644 protein-coding Slc9a9 solute carrier family 9 member A9 ENCODES a protein that exhibits potassium:proton antiporter activity (ortholog); sodium:proton antiporter activity (ortholog); INVOLVED IN defense response to bacterium (ortholog); phagosome maturation (ortholog); potassium ion transmembrane transport (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); colorectal cancer (ortholog); FOUND IN early endosome (ortholog); early phagosome (ortholog); phagocytic vesicle membrane (ortholog) NW_004955508 2060078 2671792 + 102009524 AGCD01065779;AGCD01065780;AGCD01065781;AGCD01065782;AGCD01065783;AGCD01065784;AGCD01065785;AGCD01065786;AGCD01065787;AGCD01065788;AGCD01065789;AGCD01065790;AGCD01065791;GBDF01114325;XM_005407728;XM_005407729;XM_005407730 XP_005407785;XP_005407786;XP_005407787 MODEL 8865165 ncrna LOC102018491 uncharacterized LOC102018491 NW_004955416 21069345 21083402 + 102018491 AGCD01017496;GBCB01076411;XR_001233319;XR_001233320;XR_260403;XR_260405;XR_260406 MODEL 9014295 protein-coding LOC102009370 protein FAM69A NW_004955469 9920282 9922602 + 102009370 AGCD01052521;GBCB01040907;GBDJ01083890;XM_005400517 XP_005400574 MODEL 8984655 pseudo LOC102012489 B-cell CLL/lymphoma 7 protein family member C pseudogene NW_004955402 2619020 2627815 + 102012489 AGCD01000086 MODEL 15036841 trna Trnav-gac transfer RNA valine (anticodon GAC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978799 8749852 protein-coding Slc35g2 solute carrier family 35 member G2 ASSOCIATED WITH melanoma (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN Golgi apparatus (ortholog); plasma membrane (ortholog); synaptic vesicle membrane (ortholog) NW_004955501 1974126 1998547 - 102017794 AGCD01064065;AGCD01064066;AGCD01064067;GBCQ01014308;XM_005406778 XP_005406835 MODEL 8781993 protein-coding Slc22a7 solute carrier family 22 member 7 ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); organic anion transmembrane transporter activity (ortholog); prostaglandin transmembrane transporter activity (ortholog); INVOLVED IN alpha-ketoglutarate transport (ortholog); organic anion transport (ortholog); prostaglandin transport (ortholog); PARTICIPATES IN multispecific organic anion transporter mediated transport pathway; ASSOCIATED WITH Drug-Related Side Effects and Adverse Reactions (ortholog); infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955437 9204414 9210350 + 102007276 AGCD01034522;GBDJ01341934;XM_005389765 XP_005389822 MODEL 8770314 pseudo LOC102010465 acyl carrier protein, mitochondrial pseudogene NW_004955467 7728117 7728770 - 102010465 AGCD01051438;XM_005399383 MODEL 9029353 protein-coding Osbpl11 oxysterol binding protein like 11 INVOLVED IN fat cell differentiation (ortholog); triglyceride homeostasis (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Familial Thoracic Aortic Aneurysm 7 (ortholog); FOUND IN Golgi apparatus (ortholog); nucleoplasm (ortholog) NW_004955420 24215433 24279033 + 102006669 AGCD01021285;AGCD01021286;AGCD01021287;AGCD01021288;GBBH01208647;GBDF01003513;XM_013513473 XP_013368927 MODEL 9019281 protein-coding Elmod3 ELMO domain containing 3 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN auditory receptor cell development (ortholog); cilium assembly (ortholog); cytoskeleton organization (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 81 (ortholog); autosomal recessive nonsyndromic deafness 88 (ortholog); hypomyelinating leukodystrophy 7 (ortholog); FOUND IN cilium (ortholog); Golgi apparatus (ortholog) NW_004955424 2082480 2107599 - 102005273 AGCD01024262;GBBH01150506;XM_005385437;XM_005385438;XM_013514628 XP_005385494;XP_005385495;XP_013370082 MODEL 8964150 pseudo LOC102010868 transformer-2 protein homolog alpha pseudogene NW_004955406 19929201 19930073 - 102010868 AGCD01006095 MODEL 8824698 protein-coding Top2b DNA topoisomerase II beta ENCODES a protein that exhibits chromatin binding (ortholog); DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN axonogenesis (ortholog); B cell differentiation (ortholog); cellular response to ATP (ortholog); PARTICIPATES IN doxorubicin pharmacodynamics pathway; doxorubicin response pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); B-Cell Immunodeficiency, Distal Limb Anomalies, and Urogenital Malformations (ortholog); congenital disorder of deglycosylation (ortholog); FOUND IN chromosome (ortholog); cytosol (ortholog); heterochromatin (ortholog) NW_004955430 17457603 17523115 - 102012788 AGCD01029657;AGCD01029658;AGCD01029659;AGCD01029660;AGCD01029661;AGCD01029662;GBCE01117472;GBDI01076437;XM_005387486 XP_005387543 MODEL 10368661 protein-coding LOC106149796 chromosome unknown open reading frame, human C2orf72 ASSOCIATED WITH Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog) NW_004955453 4408122 4419182 - 106149796 AGCD01044689;AGCD01044690;AGCD01044691;GBCQ01031908;XM_013519991 XP_013375445 MODEL 8829883 pseudo LOC102011682 rho guanine nucleotide exchange factor 38-like NW_004955502 656842 673369 - 102011682 AGCD01064247 MODEL 9037460 protein-coding Pcid2 PCI domain containing 2 INVOLVED IN negative regulation of gene expression, epigenetic (ortholog); negative regulation of lymphoid progenitor cell differentiation (ortholog); poly(A)+ mRNA export from nucleus (ortholog); ASSOCIATED WITH blood coagulation disease (ortholog); factor X deficiency (ortholog); hemorrhagic disease (ortholog); FOUND IN cytoplasm (ortholog); nuclear pore nuclear basket (ortholog); nucleus (ortholog) NW_004955404 618092 639424 + 102006533 AGCD01003205;GBDF01051467;GBDF01051471;XM_005373953 XP_005374010 MODEL 9042750 protein-coding Polk DNA polymerase kappa ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN cellular response to UV (ortholog); DNA damage response (ortholog); DNA repair (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 34 (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955425 25164749 25228064 - 102025704 AGCD01025910;AGCD01025911;GBDK01191546;XM_005386051;XM_013514789;XM_013514790;XM_013514791;XM_013514792;XM_013514793;XM_013514794 XP_005386108;XP_013370243;XP_013370244;XP_013370245;XP_013370246;XP_013370247;XP_013370248 MODEL 8812727 protein-coding U2surp U2 snRNP associated SURP domain containing ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955508 2880638 2931146 - 102011224 AGCD01065799;GBCE01118464;GBDF01047997;XM_005407733 XP_005407790 MODEL 8937518 protein-coding LOC102010870 keratin-associated protein 20-2-like NW_004955407 30265855 30266145 + 102010870 AGCD01007631;AGCD01007632;XM_005375652 XP_005375709 MODEL 8974694 protein-coding LOC102007857 gamma-crystallin A NW_004955457 6963680 6966414 + 102007857 AGCD01046861;XM_005396969 XP_005397026 MODEL 8949909 pseudo LOC102006363 eukaryotic translation initiation factor 1 pseudogene NW_004955423 9833774 9834101 - 102006363 AGCD01023668 MODEL 8813165 protein-coding Ranbp1 RAN binding protein 1 ENCODES a protein that exhibits GDP-dissociation inhibitor activity (ortholog); INVOLVED IN cellular response to leptomycin B (ortholog); cellular response to xenobiotic stimulus (ortholog); positive regulation of mitotic centrosome separation (ortholog); PARTICIPATES IN CRM1 export pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN axon cytoplasm (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955442 17985456 17992945 - 102024288 AGCD01037991;GBDF01008685;XM_005391735;XM_005391736 XP_005391792;XP_005391793 MODEL 9058353 protein-coding Pdzd8 PDZ domain containing 8 INVOLVED IN cytoskeleton organization (ortholog); mitochondrial calcium ion homeostasis (ortholog); mitochondrion-endoplasmic reticulum membrane tethering (ortholog); ASSOCIATED WITH Intellectual Developmental Disorder with Autism and Dysmorphic Facies (ortholog); syndromic microphthalmia 11 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); mitochondria-associated endoplasmic reticulum membrane contact site (ortholog) NW_004955431 21980447 22060826 - 102029216 AGCD01030507;AGCD01030508;AGCD01030509;GBCQ01000406;XM_005387873;XM_005387874 XP_005387930;XP_005387931 MODEL 9016022 protein-coding Pak5 p21 (RAC1) activated kinase 5 ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN learning (ortholog); locomotory behavior (ortholog); memory (ortholog); ASSOCIATED WITH ALAGILLE SYNDROME 1 (ortholog); congenital myasthenic syndrome 18 (ortholog); developmental and epileptic encephalopathy 12 (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); mitochondrion (ortholog) NW_004955415 19509727 19826087 - 102008092 AGCD01016470;AGCD01016471;AGCD01016472;AGCD01016473;AGCD01016474;AGCD01016475;AGCD01016476;AGCD01016477;AGCD01016478;AGCD01016479;AGCD01016480;AGCD01016481;AGCD01016482;GBBH01180023;GBCE01066610;XM_013512104 XP_013367558 MODEL 9050627 pseudo LOC102018502 mitochondrial folate transporter/carrier pseudogene NW_004955487 5235509 5238027 - 102018502 AGCD01059323 MODEL 8796917 protein-coding Prkab2 protein kinase AMP-activated non-catalytic subunit beta 2 ENCODES a protein that exhibits AMP-activated protein kinase activity (ortholog); enzyme binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); positive regulation of cold-induced thermogenesis (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); cataract 46 juvenile-onset (ortholog); chromosome 1q21.1 deletion syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); cAMP-dependent protein kinase complex (ortholog); cytoplasm (ortholog) NW_004955568 1253331 1279761 + 102015995 AGCD01074543;GBDF01307774;XM_005413470 XP_005413527 MODEL 9020184 pseudo LOC102018882 microtubule-associated protein RP/EB family member 1 pseudogene NW_004955403 4209027 4215282 + 102018882 AGCD01001781 MODEL 8934610 protein-coding Snrnp25 small nuclear ribonucleoprotein U11/U12 subunit 25 ASSOCIATED WITH familial focal epilepsy with variable foci 3 (ortholog); FOUND IN cytosol (ortholog); intercellular bridge (ortholog); nucleoplasm (ortholog) NW_004955442 17098487 17101497 - 102009889 AGCD01037937;GBDF01163382;XM_005391683 XP_005391740 MODEL 8762248 protein-coding Phf24 PHD finger protein 24 INVOLVED IN detection of mechanical stimulus involved in sensory perception of pain (ortholog); gamma-aminobutyric acid signaling pathway (ortholog); regulation of G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN glutamatergic synapse (ortholog); synaptic vesicle membrane (ortholog) NW_004955472 1186021 1204018 - 102017226 AGCD01053379;GBDF01285827;XM_005401035;XM_013523027 XP_005401092;XP_013378481 MODEL 8705067 protein-coding Rab10 RAB10, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GDP-dissociation inhibitor binding (ortholog); GTP binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); axonogenesis (ortholog); cellular response to antibiotic (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH Liver Reperfusion Injury (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN cilium (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum tubular network (ortholog) NW_004955469 8057235 8138983 + 102009369 AGCD01052446;AGCD01052447;AGCD01052448;AGCD01052449;AGCD01052450;AGCD01052451;AGCD01052452;GBDF01090181;XM_005400418 XP_005400475 MODEL 9033306 protein-coding Sema5a semaphorin 5A ENCODES a protein that exhibits axon guidance receptor activity (ortholog); chondroitin sulfate proteoglycan binding (ortholog); heparan sulfate proteoglycan binding (ortholog); INVOLVED IN axon extension (ortholog); axon guidance (ortholog); axonal fasciculation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Charcot-Marie-Tooth disease (ortholog); intellectual disability (ortholog); FOUND IN membrane (ortholog) NW_004955504 6343747 6691945 - 102019086 AGCD01064921;AGCD01064922;AGCD01064923;AGCD01064924;AGCD01064925;AGCD01064926;AGCD01064927;AGCD01064928;AGCD01064929;GBCQ01101626;XM_005407077;XM_013505908 XP_005407134;XP_013361362 MODEL 9012039 protein-coding Vwc2l von Willebrand factor C domain containing 2 like INVOLVED IN negative regulation of BMP signaling pathway (ortholog); positive regulation of neuron differentiation (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); extracellular space (ortholog) NW_004955457 1392622 1540314 - 102021522 AGCD01046723;AGCD01046724;AGCD01046725;AGCD01046726;AGCD01046727;GBDF01130103;XM_013520670;XM_013520671 XP_013376124;XP_013376125 MODEL 8933022 protein-coding Bpifc BPI fold containing family C ASSOCIATED WITH glucose-galactose malabsorption (ortholog); muscular dystrophy-dystroglycanopathy type B6 (ortholog) NW_004955405 41376471 41403410 - 102028820 AGCD01005549;GBCC01004323;GBDI01161130;XM_013519152 XP_013374606 MODEL 8721471 pseudo LOC102023176 O(6)-methylguanine-induced apoptosis 2-like NW_004955506 1972894 1985977 - 102023176 AGCD01065284;AGCD01065285;AGCD01065286 MODEL 8859305 protein-coding LOC102011263 cornifin-B NW_004955592 410702 412632 - 102011263 AGCD01076312;GBCC01001188;XM_005414616 XP_005414673 MODEL 8796399 protein-coding Top3a DNA topoisomerase III alpha ENCODES a protein that exhibits DNA topoisomerase type I (single strand cut, ATP-independent) activity (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN chromosome separation (ortholog); DNA topological change (ortholog); double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 5 (ortholog); Birt-Hogg-Dube syndrome (ortholog); FOUND IN mitochondrion (ortholog); PML body (ortholog); RecQ family helicase-topoisomerase III complex (ortholog) NW_004955478 11015378 11045717 + 102020114 AGCD01056157;GBDF01128087;XM_005402278;XM_005402279 XP_005402335;XP_005402336 MODEL 9001759 ncrna LOC102017359 uncharacterized LOC102017359 NW_004955425 3673946 3696655 + 102017359 AGCD01025295;GBDJ01147464;XR_001234286;XR_001234287 MODEL 8908905 protein-coding Osbpl1a oxysterol binding protein like 1A ENCODES a protein that exhibits cholesterol binding (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN endosome (ortholog); late endosome (ortholog); organelle membrane contact site (ortholog) NW_004955402 12530130 12718703 - 102009335 AGCD01000391;AGCD01000392;AGCD01000393;AGCD01000394;AGCD01000395;AGCD01000396;AGCD01000397;AGCD01000398;AGCD01000399;GBCB01023255;XM_005372715;XM_005372716;XM_005372717;XM_005372719;XM_013504468 XP_005372772;XP_005372773;XP_005372774;XP_005372776;XP_013359922 MODEL 8812610 pseudo LOC102006737 acyl carrier protein, mitochondrial pseudogene NW_004955452 9572395 9574890 - 102006737 AGCD01044240 MODEL 8752051 protein-coding Smurf2 SMAD specific E3 ubiquitin protein ligase 2 ENCODES a protein that exhibits identical protein binding (ortholog); SMAD binding (ortholog); transforming growth factor beta receptor binding (ortholog); INVOLVED IN negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); positive regulation of trophoblast cell migration (ortholog); ubiquitin-dependent protein catabolic process (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH diffuse large B-cell lymphoma (ortholog); hyperkalemic periodic paralysis (ortholog); FOUND IN nuclear speck (ortholog); ubiquitin ligase complex (ortholog) NW_004955478 7205266 7336390 + 102027523 AGCD01055954;AGCD01055955;AGCD01055956;AGCD01055957;GBCE01117695;XM_013503133 XP_013358587 MODEL 9052859 protein-coding Slc9b1 solute carrier family 9 member B1 INVOLVED IN flagellated sperm motility (ortholog); regulation of intracellular pH (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); beta-mannosidosis (ortholog); genetic disease (ortholog); FOUND IN sperm principal piece (ortholog) NW_004955496 5586836 5637550 + 102014260 AGCD01062355;GBDF01050817;XM_005406240;XM_005406242;XM_013505380 XP_005406297;XP_005406299;XP_013360834 MODEL 8933501 pseudo LOC102007860 60S ribosomal protein L5-like NW_004955408 33188427 33213642 + 102007860 AGCD01008863 MODEL 8897615 protein-coding Rpusd4 RNA pseudouridine synthase D4 ENCODES a protein that exhibits mitochondrial ribosomal large subunit rRNA binding (ortholog); pseudouridine synthase activity (ortholog); tRNA binding (ortholog); INVOLVED IN mitochondrial tRNA pseudouridine synthesis (ortholog); mRNA pseudouridine synthesis (ortholog); positive regulation of mitochondrial translation (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955412 27231371 27239366 - 102028282 AGCD01013231;AGCD01013232;GBDK01358362;XM_005378485;XM_005378487 XP_005378542;XP_005378544 MODEL 10240056 ncrna LOC106146967 uncharacterized LOC106146967 NW_004955508 6047654 6070056 - 106146967 AGCD01065912;GBDF01280471;XR_001231654 MODEL 8808010 protein-coding Prss50 serine protease 50 ENCODES a protein that exhibits threonine-type endopeptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955420 25424082 25427705 + 102006920 AGCD01021358;GBDF01050276;GBDF01050277;XM_013513353 XP_013368807 MODEL 8876170 trna Trnav-uac transfer RNA valine (anticodon UAC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955586;NW_004955418;NW_004955511;NW_004955511 762475;25922316;4044144;4043788 762547;25922388;4044216;4043860 +;-;-;- 101978800 AGCD01019379;AGCD01066488;AGCD01076044 MODEL 8763440 protein-coding Nars1 asparaginyl-tRNA synthetase 1 ENCODES a protein that exhibits asparagine-tRNA ligase activity (ortholog); CCR3 chemokine receptor binding (ortholog); protein dimerization activity (ortholog); INVOLVED IN asparaginyl-tRNA aminoacylation (ortholog); cell migration (ortholog); cerebral cortex development (ortholog); PARTICIPATES IN Canavan disease pathway; ASSOCIATED WITH Developmental Disease (ortholog); immunodeficiency 12 (ortholog); isolated microphthalmia 3 (ortholog); FOUND IN cytosol (ortholog) NW_004955402 41947592 41967136 - 102006408 AGCD01001028;GBCQ01005139;XM_005372977 XP_005373034 MODEL 8776416 pseudo LOC102015454 U6 snRNA-associated Sm-like protein LSm3 pseudogene NW_004955440 3420455 3423022 - 102015454 AGCD01036242 MODEL 8901704 protein-coding Slc22a8 solute carrier family 22 member 8 ENCODES a protein that exhibits antiporter activity (ortholog); organic anion transmembrane transporter activity (ortholog); prostaglandin transmembrane transporter activity (ortholog); INVOLVED IN glutathione transport (ortholog); prostaglandin transport (ortholog); quaternary ammonium group transport (ortholog); PARTICIPATES IN ibuprofen pharmacodynamics pathway; ibuprofen pharmacokinetics pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Experimental Liver Cirrhosis (ortholog); Human Influenza (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955599 284038 299603 + 102002974 AGCD01076637;GBDF01062374;XM_005414750;XM_005414751;XM_005414752 XP_005414807;XP_005414808;XP_005414809 MODEL 9033046 protein-coding LOC102010472 olfactory receptor 688 ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog) NW_004955414 21882234 21901979 + 102010472 AGCD01015436;XM_005380504 XP_005380561 MODEL 9035728 ncrna LOC102024158 uncharacterized LOC102024158 NW_004955435 18613685 18623159 + 102024158 AGCD01033408;GBDF01076618;XR_261722 MODEL 9005513 protein-coding Prkaca protein kinase cAMP-activated catalytic subunit alpha ENCODES a protein that exhibits ATP binding (ortholog); cAMP-dependent protein kinase activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); cAMP/PKA signal transduction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH ACTH-independent macronodular adrenal hyperplasia 1 (ortholog); adrenal cortical adenoma (ortholog); Adrenal Gland Neoplasms (ortholog); FOUND IN acrosomal vesicle (ortholog); axoneme (ortholog); cAMP-dependent protein kinase complex (ortholog) NW_004955415 32794172 32807944 - 102010480 AGCD01016734;GBDK01132638;XM_013512354 XP_013367808 MODEL 8879454 protein-coding Rgs10 regulator of G protein signaling 10 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN G protein-coupled acetylcholine receptor signaling pathway (ortholog); positive regulation of GTPase activity (ortholog); response to amphetamine (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Experimental Seizures (ortholog); opioid abuse (ortholog); FOUND IN axon terminus (ortholog); cytosol (ortholog); dendritic spine (ortholog) NW_004955551 318229 348578 - 102009228 AGCD01072654;GBDI01084285;XM_005412158;XM_013508591 XP_005412215;XP_013364045 MODEL 8810815 protein-coding Rbms3 RNA binding motif single stranded interacting protein 3 ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); mRNA 3'-UTR binding (ortholog); poly(A) binding (ortholog); INVOLVED IN defense response to tumor cell (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH exfoliation syndrome (ortholog); FOUND IN cytoplasm (ortholog) NW_004955430 20714647 21394049 + 102020364 AGCD01029751;AGCD01029752;AGCD01029753;AGCD01029754;AGCD01029755;AGCD01029756;AGCD01029757;AGCD01029758;AGCD01029759;AGCD01029760;AGCD01029761;AGCD01029762;AGCD01029763;AGCD01029764;AGCD01029765;GBCB01027277;XM_005387516;XM_013515627;XM_013515628;XM_013515629;XM_013515630;XM_013515631 XP_005387573;XP_013371081;XP_013371082;XP_013371083;XP_013371084;XP_013371085 MODEL 8821237 protein-coding LOC102011688 uncharacterized LOC102011688 NW_004955429 5818013 5828157 + 102011688 AGCD01028537;XM_013515350 XP_013370804 MODEL 8798004 protein-coding Pth2r parathyroid hormone 2 receptor ENCODES a protein that exhibits parathyroid hormone receptor activity (ortholog); INVOLVED IN positive regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); primary pulmonary hypertension (ortholog); syndromic intellectual disability (ortholog) NW_004955457 6584627 6674990 - 102025875 AGCD01046846;AGCD01046847;AGCD01046848;AGCD01046849;AGCD01046850;XM_005397112 XP_005397169 MODEL 8732465 protein-coding Phf3 PHD finger protein 3 ASSOCIATED WITH astigmatism (ortholog); autism spectrum disorder (ortholog); fundus dystrophy (ortholog) NW_004955502 195332 271749 - 102021992 AGCD01064232;GBCQ01101060;GBDF01122588;XM_013505825;XM_013505826 XP_013361279;XP_013361280 MODEL 39133675 snorna U3 Small nucleolar RNA U3 9065919 ncrna LOC102010129 uncharacterized LOC102010129 NW_004955457 12742119 12748992 + 102010129 AGCD01047026;GBCB01083718;XR_262945 MODEL 8980830 protein-coding Plekhs1 pleckstrin homology domain containing S1 ASSOCIATED WITH disease of cellular proliferation (ortholog); glucose intolerance (ortholog); Insulin Resistance (ortholog) NW_004955431 18745990 18798517 + 102008969 AGCD01030434;AGCD01030435;GBDI01020069;XM_005387803;XM_013515824;XM_013515825;XM_013515826;XM_013515828;XM_013515829;XM_013515830;XM_013515831;XR_001234618;XR_001234619;XR_001234620;XR_001234621 XP_005387860;XP_013371278;XP_013371279;XP_013371280;XP_013371282;XP_013371283;XP_013371284;XP_013371285 MODEL 8817488 ncrna LOC102021468 uncharacterized LOC102021468 NW_004955429 22067479 22079189 + 102021468 AGCD01029017;GBDK01379872;XR_001234457;XR_001234458 MODEL 8776952 pseudo LOC102006370 non-histone chromosomal protein HMG-17 pseudogene NW_004955427 21180390 21189979 - 102006370 AGCD01027432;AGCD01027433;XR_261284 MODEL 9022719 pseudo LOC102006739 40S ribosomal protein S4, X isoform-like NW_004955453 3829718 3830520 + 102006739 AGCD01044669 MODEL 8836799 protein-coding Pdzd9 PDZ domain containing 9 ASSOCIATED WITH autistic disorder (ortholog); chromosome 16p12.1 deletion syndrome (ortholog); mitochondrial complex III deficiency nuclear type 5 (ortholog) NW_004955493 690694 705953 - 102008545 AGCD01060859;GBDF01005698;XM_005405055;XM_005405056 XP_005405112;XP_005405113 MODEL 8815848 protein-coding Lect2 leukocyte cell derived chemotaxin 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of Wnt signaling pathway (ortholog); ASSOCIATED WITH Carcinoma, Lewis Lung (ortholog); Experimental Neoplasms (ortholog); familial adenomatous polyposis 1 (ortholog) NW_004955408 31016955 31068998 - 102014217 AGCD01008819;AGCD01008820;AGCD01008821;GBCB01037968;XM_005376494;XM_013506809 XP_005376551;XP_013362263 MODEL 8824262 protein-coding LOC102018506 cytochrome c oxidase subunit 4 isoform 2, mitochondrial INVOLVED IN cellular response to hypoxia (ortholog); mitochondrial electron transport, cytochrome c to oxygen (ortholog); ASSOCIATED WITH Exocrine Pancreatic Insufficiency, Dyserythropoietic Anemia, and Calvarial Hyperostosis (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955422 29320720 29329082 - 102018506 AGCD01023390;GBBH01150060;GBCQ01033098;XM_005384903 XP_005384960 MODEL 9035646 protein-coding Spry3 sprouty RTK signaling antagonist 3 INVOLVED IN negative regulation of ERK1 and ERK2 cascade (ortholog); negative regulation of MAPK cascade (ortholog); negative regulation of neuron projection arborization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); high grade glioma (ortholog); immunodeficiency 33 (ortholog) NW_004955594 151117 158627 - 102022244 AGCD01076418;XM_005414640;XM_005414641 XP_005414697;XP_005414698 MODEL 10108923 ncrna LOC106149797 uncharacterized LOC106149797 NW_004955453 4448556 4451666 + 106149797 AGCD01044691;GBDF01088114;XR_001236195 MODEL 8996456 protein-coding Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN U4/U6 x U5 tri-snRNP complex (ortholog) NW_004955424 15243190 15251831 - 102013100 AGCD01024700;GBDF01118203;XM_005385637;XM_013514749;XM_013514750;XR_001234249;XR_001234250 XP_005385694;XP_013370203;XP_013370204 MODEL 9047003 protein-coding Thbs2 thrombospondin 2 INVOLVED IN negative regulation of angiogenesis (ortholog); positive regulation of synapse assembly (ortholog); ASSOCIATED WITH Cerebral Hemorrhage (ortholog); diabetes mellitus (ortholog); diabetic angiopathy (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); platelet alpha granule (ortholog) NW_004955411 4315055 4347044 + 102023125 AGCD01011577;GBCE01137755;XM_005377646 XP_005377703 MODEL 8744471 protein-coding Slc23a1 solute carrier family 23 member 1 ENCODES a protein that exhibits dehydroascorbic acid transmembrane transporter activity (ortholog); L-ascorbate:sodium symporter activity (ortholog); L-ascorbic acid transmembrane transporter activity (ortholog); INVOLVED IN brain development (ortholog); dehydroascorbic acid transport (ortholog); L-ascorbic acid transmembrane transport (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); cholestasis (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); brush border (ortholog) NW_004955418 1176390 1192270 + 102019599 AGCD01018712;GBDJ01116644;XM_005382074;XM_005382075;XM_005382076;XM_005382077;XM_013512911 XP_005382131;XP_005382132;XP_005382133;XP_005382134;XP_013368365 MODEL 8773462 pseudo LOC102010871 60S ribosomal protein L39 pseudogene NW_004955455 11174068 11175753 - 102010871 AGCD01045985;XM_005396506;XM_005396507 MODEL 8854509 protein-coding Trim17 tripartite motif containing 17 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN autophagy (ortholog); protein autoubiquitination (ortholog); regulation of protein localization (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955581 107251 113907 + 102011712 AGCD01075657;GBDF01052383;XM_005414229;XM_005414230;XM_005414231 XP_005414286;XP_005414287;XP_005414288 MODEL 9053275 protein-coding Pcif1 phosphorylated CTD interacting factor 1 ENCODES a protein that exhibits mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity (ortholog); RNA polymerase II C-terminal domain binding (ortholog); RNA polymerase II C-terminal domain phosphoserine binding (ortholog); INVOLVED IN mRNA processing (ortholog); negative regulation of translation (ortholog); positive regulation of translation (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); galactosialidosis (ortholog); FOUND IN intercellular bridge (ortholog); microtubule cytoskeleton (ortholog); nucleoplasm (ortholog) NW_004955445 11355227 11368392 - 102024858 AGCD01039687;GBCB01051984;XM_005392398;XM_005392399 XP_005392455;XP_005392456 MODEL 39133738 snorna SNORA84 small nucleolar RNA, H/ACA box 84 8952705 ncrna LOC102009372 uncharacterized LOC102009372 NW_004955470 3387443 3399619 - 102009372 AGCD01052700;GBDF01014209;XR_263462 MODEL 8877149 pseudo LOC102011265 E3 ubiquitin-protein ligase RNF13 pseudogene NW_004955450 12920957 12924698 - 102011265 AGCD01042721 MODEL 8993993 protein-coding Slc23a2 solute carrier family 23 member 2 ENCODES a protein that exhibits L-ascorbate:sodium symporter activity (ortholog); L-ascorbic acid transmembrane transporter activity (ortholog); INVOLVED IN blood circulation (ortholog); cellular response to ethanol (ortholog); L-ascorbic acid metabolic process (ortholog); ASSOCIATED WITH Binge Drinking (ortholog); cholestasis (ortholog); Huntington's disease-like 1 (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955415 15565344 15677935 - 102009494 AGCD01016349;AGCD01016350;AGCD01016351;AGCD01016352;AGCD01016353;GBCE01023386;XM_005380822;XM_005380823 XP_005380879;XP_005380880 MODEL 8765168 pseudo LOC102018885 histone H2A.Z pseudogene NW_004955452 16500190 16501449 + 102018885 AGCD01044514;XM_005395228;XM_005395229 MODEL 8890822 protein-coding Eln elastin ENCODES a protein that exhibits extracellular matrix binding (ortholog); extracellular matrix constituent conferring elasticity (ortholog); INVOLVED IN aorta development (ortholog); aortic valve morphogenesis (ortholog); blood vessel remodeling (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Anetoderma (ortholog); aortic aneurysm (ortholog); FOUND IN elastic fiber (ortholog); extracellular region (ortholog); extracellular space (ortholog) NW_004955456 13788992 13818836 - 102020983 AGCD01046622;AGCD01046623;GBDF01022221;XM_013520582;XM_013520583;XM_013520584;XM_013520585;XM_013520586;XM_013520587;XM_013520588;XM_013520589;XM_013520590;XM_013520591;XM_013520592;XM_013520593 XP_013376036;XP_013376037;XP_013376038;XP_013376039;XP_013376040;XP_013376041;XP_013376042;XP_013376043;XP_013376044;XP_013376045;XP_013376046;XP_013376047 MODEL 8744887 protein-coding Smyd1 SET and MYND domain containing 1 ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); heart development (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955424 769287 800646 - 102013428 AGCD01024208;AGCD01024209;GBCB01005536;XM_005385382;XM_005385383 XP_005385439;XP_005385440 MODEL 8852371 protein-coding Pitpnm3 PITPNM family member 3 ENCODES a protein that exhibits calcium ion binding (ortholog); receptor tyrosine kinase binding (ortholog); ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); cone dystrophy (ortholog); cone-rod dystrophy (ortholog); FOUND IN cell body (ortholog); cell projection (ortholog) NW_004955467 11973181 12051388 - 102005789 AGCD01051621;AGCD01051622;AGCD01051623;AGCD01051624;GBDI01024423;XM_005399663;XM_013522224 XP_005399720;XP_013377678 MODEL 9034902 protein-coding Slc23a3 solute carrier family 23 member 3 INVOLVED IN hypoxanthine transport (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); myofibrillar myopathy 1 (ortholog) NW_004955453 14271343 14278233 + 102022157 AGCD01044861;GBCQ01068748;XM_005395589;XM_005395590 XP_005395646;XP_005395647 MODEL 8945805 ncrna LOC102018513 uncharacterized LOC102018513 NW_004955426 16028415 16032540 + 102018513 AGCD01026457;GBDF01159738;XR_261197 MODEL 9015041 protein-coding Rab11a RAB11A, member RAS oncogene family ENCODES a protein that exhibits dynein light intermediate chain binding (ortholog); G protein activity (ortholog); GTP binding (ortholog); INVOLVED IN amyloid-beta clearance by transcytosis (ortholog); astral microtubule organization (ortholog); early endosome to recycling endosome transport (ortholog); PARTICIPATES IN autophagy pathway; eicosanoid signaling pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; ASSOCIATED WITH Bloom syndrome (ortholog); Chloracne (ortholog); colorectal cancer (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); cleavage furrow (ortholog) NW_004955450 9638761 9656291 - 102030586 AGCD01042594;GBCQ01006854;XM_005393706 XP_005393763 MODEL 8871419 protein-coding Rrad RRAD, Ras related glycolysis inhibitor and calcium channel regulator INVOLVED IN negative regulation of cell growth (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Breast Neoplasms (ortholog); Cardiac Arrhythmias (ortholog); FOUND IN plasma membrane (ortholog); T-tubule (ortholog) NW_004955433 23426258 23439094 - 102016839 AGCD01031960;AGCD01031961;AGCD01031962;AGCD01031963;GBCE01160070;GBCQ01004333;XM_013516112 XP_013371566 MODEL 9053767 pseudo LOC102024160 nuclear receptor-binding factor 2-like NW_004955435 9380995 9387375 - 102024160 AGCD01033048;AGCD01033049 MODEL 8861275 pseudo LOC102003599 ubiquitin-like protein ATG12 pseudogene NW_004955448 10940263 10942006 + 102003599 AGCD01041506 MODEL 10258642 ncrna LOC106149799 uncharacterized LOC106149799 NW_004955453 16319868 16386666 - 106149799 AGCD01044900;AGCD01044901;AGCD01044902;GBBH01207759;XR_001236199;XR_001236200;XR_001236201 MODEL 8720440 protein-coding LOC102012491 kinesin-like protein KIF13B NW_004955802 3103 18233 - 102012491 AGCD01078376;GBDK01191507;GBDK01191509;XM_005415115 XP_005415172 MODEL 8874000 protein-coding Bpnt1 3'(2'), 5'-bisphosphate nucleotidase 1 ENCODES a protein that exhibits 3'(2'),5'-bisphosphate nucleotidase activity (ortholog); inositol-1,4-bisphosphate 1-phosphatase activity (ortholog); magnesium ion binding (ortholog); PARTICIPATES IN sulfite oxidase deficiency pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); gastrointestinal stromal tumor (ortholog); Loeys-Dietz syndrome 4 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955520 3521096 3543255 + 102023516 AGCD01068105;GBDF01128212;XM_005409271;XM_005409272;XM_005409273;XM_005409274;XM_005409275;XR_264596 XP_005409328;XP_005409329;XP_005409330;XP_005409331;XP_005409332 MODEL 8747112 ncrna LOC102017365 uncharacterized LOC102017365 NW_004955511 2487341 2488839 + 102017365 AGCD01066408;GBDF01074018;XR_264419 MODEL 9034606 ncrna LOC102011689 uncharacterized LOC102011689 NW_004955511 5972095 5975480 + 102011689 AGCD01066594;XR_264436 MODEL 8708389 protein-coding Slc35g6 solute carrier family 35 member G6 ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog) NW_004955467 9447756 9450653 - 102012080 AGCD01051511;GBDF01001619;XM_013522195 XP_013377649 MODEL 8787801 protein-coding Top3b DNA topoisomerase III beta ENCODES a protein that exhibits RNA topoisomerase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog); FOUND IN condensed chromosome (ortholog); DNA topoisomerase III-beta-TDRD3 complex (ortholog); nucleus (ortholog) NW_004955442 17201079 17223824 + 102011701 AGCD01037946;GBBH01143487;XM_005391689;XM_005391690;XM_005391691;XM_005391692;XM_005391693;XM_013517987 XP_005391746;XP_005391747;XP_005391748;XP_005391749;XP_005391750;XP_013373441 MODEL 8919885 protein-coding Phf5a PHD finger protein 5A ENCODES a protein that exhibits RNA binding (ortholog); zinc ion binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); positive regulation of DNA-templated transcription (ortholog); stem cell differentiation (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); genetic disease (ortholog); FOUND IN nuclear matrix (ortholog); nuclear speck (ortholog); nucleolus (ortholog) NW_004955413 27018730 27026937 - 102019682 AGCD01014491;GBDI01060064;XM_005379353 XP_005379410 MODEL 10116182 ncrna LOC106146968 uncharacterized LOC106146968 NW_004955508 6085745 6093387 - 106146968 AGCD01065912;GBDF01280482;XR_001231655 MODEL 8979047 protein-coding Plet1 placenta expressed transcript 1 INVOLVED IN negative regulation of cell-matrix adhesion (ortholog); positive regulation of cell migration (ortholog); wound healing, spreading of epidermal cells (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); FOUND IN apical plasma membrane (ortholog); external side of plasma membrane (ortholog) NW_004955412 13902940 13912761 - 102030508 AGCD01012847;GBDJ01016895;XM_005378121 XP_005378178 MODEL 8979867 protein-coding Slc9b2 solute carrier family 9 member B2 ENCODES a protein that exhibits identical protein binding (ortholog); lithium:proton antiporter activity (ortholog); sodium:proton antiporter activity (ortholog); INVOLVED IN clathrin-dependent endocytosis (ortholog); flagellated sperm motility (ortholog); lithium ion transport (ortholog); ASSOCIATED WITH beta-mannosidosis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); endosome membrane (ortholog) NW_004955496 5532113 5587801 + 102012874 AGCD01062355;XM_005406234;XM_005406235;XM_005406236;XM_005406237;XM_013505377;XM_013505378;XM_013505379 XP_005406291;XP_005406292;XP_005406293;XP_005406294;XP_013360831;XP_013360832;XP_013360833 MODEL 8974543 protein-coding Nars2 asparaginyl-tRNA synthetase 2, mitochondrial ASSOCIATED WITH autosomal recessive nonsyndromic deafness 94 (ortholog); combined oxidative phosphorylation deficiency 1 (ortholog); combined oxidative phosphorylation deficiency 24 (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955414 13410751 13528014 + 102003645 AGCD01015109;AGCD01015110;AGCD01015111;AGCD01015112;GBDF01042937;XM_005379814;XM_005379815;XM_005379816 XP_005379871;XP_005379872;XP_005379873 MODEL 8950318 protein-coding LOC102023178 membrane-spanning 4-domains subfamily A member 4A-like NW_004955511 5136245 5165206 - 102023178 AGCD01066549;GBDK01377541;XM_005408090;XM_005408091 XP_005408147;XP_005408148 MODEL 8722832 protein-coding Eloa elongin A INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); transcription elongation by RNA polymerase II (ortholog); transcription initiation at RNA polymerase II promoter (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN elongin complex (ortholog); site of DNA damage (ortholog); transcription elongation factor complex (ortholog) NW_004955452 3668868 3681506 + 102018252 AGCD01043934;GBDF01087483;XM_013519496 XP_013374950 MODEL 8799746 ncrna LOC102005323 uncharacterized LOC102005323 NW_004955402 4782171 4812521 - 102005323 AGCD01000126;AGCD01000127;GBDI01204334;XR_001236325;XR_259027 MODEL 8956076 protein-coding Ranbp10 RAN binding protein 10 ENCODES a protein that exhibits beta-tubulin binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN microtubule cytoskeleton organization (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); chromosome 16q22 deletion syndrome (ortholog); FOUND IN cytoplasm (ortholog); microtubule cytoskeleton (ortholog); ubiquitin ligase complex (ortholog) NW_004955484 8889349 8960122 + 102023702 AGCD01058400;AGCD01058401;GBDF01123418;XM_005403623 XP_005403680 MODEL 39133567 snorna U3 Small nucleolar RNA U3 8727246 protein-coding Thbs3 thrombospondin 3 ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN bone trabecula formation (ortholog); growth plate cartilage development (ortholog); ossification involved in bone maturation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); Gaucher's disease type I (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog) NW_004955545 1664372 1675810 - 102003381 AGCD01071865;AGCD01071866;GBDK01058843;XM_005411591;XM_005411593;XM_005411594;XM_013508309;XM_013508310 XP_005411648;XP_005411650;XP_005411651;XP_013363763;XP_013363764 MODEL 8730163 pseudo LOC102010130 olfactory receptor 1361-like NW_004955408 1554851 1556907 + 102010130 AGCD01007965 MODEL 8943317 protein-coding Pak6 p21 (RAC1) activated kinase 6 INVOLVED IN learning (ortholog); locomotory behavior (ortholog); memory (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); clear cell renal cell carcinoma (ortholog); colorectal cancer (ortholog); FOUND IN cell junction (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955416 7190584 7211705 + 102015950 AGCD01016969;AGCD01016970;GBDI01263427;XM_013512644 XP_013368098 MODEL 9042344 protein-coding Rgs11 regulator of G protein signaling 11 ENCODES a protein that exhibits G-protein beta-subunit binding (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); morphine dependence (ortholog); FOUND IN cell tip (ortholog); dendrite (ortholog); dendrite terminus (ortholog) NW_004955442 16905982 16914772 + 102004206 AGCD01037922;AGCD01037923;GBDF01207822;XM_005391662;XM_005391663;XM_005391664;XM_005391665;XM_005391666 XP_005391719;XP_005391720;XP_005391721;XP_005391722;XP_005391723 MODEL 9032962 protein-coding LOC102007872 olfactory receptor 2B6-like NW_004955465 13408100 13409973 - 102007872 AGCD01050608;XM_005398953 XP_005399010 MODEL 8852622 ncrna LOC102009373 uncharacterized LOC102009373 NW_004955471 267562 303293 + 102009373 AGCD01052952;AGCD01052953;AGCD01052954;GBDK01102526;XR_001237060;XR_263510 MODEL 8937339 trna Trnaw-cca transfer RNA tryptophan (anticodon CCA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978834 AGCD01005375;AGCD01048768;AGCD01051216;AGCD01051466;AGCD01051471;AGCD01057629 MODEL 8915713 protein-coding LOC102021470 olfactory receptor 8H1-like NW_004955511 5092184 5093131 + 102021470 AGCD01066548;XM_005408085 XP_005408142 MODEL 8764522 protein-coding Prss53 serine protease 53 ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); dilated cardiomyopathy (ortholog) NW_004955493 7921335 7927233 - 102020456 AGCD01061240;GBDJ01350491;XM_013504760 XP_013360214 MODEL 8825637 protein-coding LOC102008228 chemokine XC receptor 1-like NW_004955420 26003029 26017172 + 102008228 AGCD01021384;AGCD01021385;AGCD01021386;AGCD01021387;AGCD01021388;GBDK01289511;XM_013513345 XP_013368799 MODEL 8885451 ncrna LOC102006744 uncharacterized LOC102006744 NW_004955408 16899632 16911435 - 102006744 AGCD01008448;GBBH01062027;XR_001232354 MODEL 9004875 protein-coding LOC102015455 olfactory receptor 13A1-like NW_004955546 2382212 2436072 + 102015455 AGCD01072089;AGCD01072090;AGCD01072091;AGCD01072092;XM_005411790;XM_013508369 XP_005411847;XP_013363823 MODEL 10158189 ncrna LOC106146969 uncharacterized LOC106146969 NW_004955508 1708529 1833708 - 106146969 AGCD01065774;GBCE01109579;XR_001231656;XR_001231657;XR_001231658 MODEL 8913683 protein-coding Phf6 PHD finger protein 6 ENCODES a protein that exhibits enzyme binding (ortholog); histone binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955473 527005 586589 - 102024217 AGCD01053844;AGCD01053845;AGCD01053846;AGCD01053847;GBDK01432847;XM_005401199;XM_013523061 XP_005401256;XP_013378515 MODEL 9045627 protein-coding Lef1 lymphoid enhancer binding factor 1 ENCODES a protein that exhibits armadillo repeat domain binding (ortholog); beta-catenin binding (ortholog); C2H2 zinc finger domain binding (ortholog); INVOLVED IN alpha-beta T cell differentiation (ortholog); anatomical structure regression (ortholog); animal organ regeneration (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Animal Disease Models (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); basal cell carcinoma (ortholog); FOUND IN beta-catenin-TCF complex (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955496 1728840 1827749 + 102029309 AGCD01062260;GBCE01113238;XM_005406198;XM_005406199;XM_005406200;XM_005406201;XM_005406202;XM_005406203 XP_005406255;XP_005406256;XP_005406257;XP_005406258;XP_005406259;XP_005406260 MODEL 9062428 protein-coding Vwce von Willebrand factor C and EGF domains ASSOCIATED WITH Dwarfism (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955511 6235934 6251186 + 102018755 AGCD01066598;GBCQ01151731;XM_005408169 XP_005408226 MODEL 8810622 protein-coding Snrnp35 small nuclear ribonucleoprotein U11/U12 subunit 35 ASSOCIATED WITH oculopharyngodistal myopathy 4 (ortholog); short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog); U12-type spliceosomal complex (ortholog) NW_004955482 5457159 5461694 - 102018093 AGCD01057330;AGCD01057331;GBCB01097803;GBDJ01187224;XM_005403037 XP_005403094 MODEL 8754338 protein-coding Pitrm1 pitrilysin metallopeptidase 1 ENCODES a protein that exhibits metalloendopeptidase activity (ortholog); metallopeptidase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 30 (ortholog); mitochondrial DNA depletion syndrome 7 (ortholog); nicotine dependence (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955421 28010756 28041336 + 102020925 AGCD01022304;AGCD01022305;AGCD01022306;GBCE01076483;GBDF01157422;XM_013513654 XP_013369108 MODEL 8847952 protein-coding Prkacb protein kinase cAMP-activated catalytic subunit beta ENCODES a protein that exhibits ATP binding (ortholog); cAMP-dependent protein kinase activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN negative regulation of meiotic cell cycle (ortholog); negative regulation of smoothened signaling pathway (ortholog); negative regulation of TORC1 signaling (ortholog); PARTICIPATES IN adenosine signaling pathway; dopamine signaling pathway; dopamine signaling pathway via D1 family of receptors; ASSOCIATED WITH adrenal cortical adenoma (ortholog); biliary tract benign neoplasm (ortholog); brain ischemia (ortholog); FOUND IN cAMP-dependent protein kinase complex (ortholog); centrosome (ortholog); ciliary base (ortholog) NW_004955423 9630308 9747820 - 102004726 AGCD01023663;AGCD01023664;AGCD01023665;GBCB01073774;XM_005385166 XP_005385223 MODEL 9024076 protein-coding Rbmx RNA binding motif protein X-linked ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); mRNA binding (ortholog); INVOLVED IN cellular response to interleukin-1 (ortholog); membrane protein ectodomain proteolysis (ortholog); mRNA splice site recognition (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Christianson syndrome (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); euchromatin (ortholog); extracellular exosome (ortholog) NW_004955489 8280842 8286252 + 102010494 AGCD01060013;GBCE01001763;XM_013504493 XP_013359947 MODEL 8716520 protein-coding LOC102003601 EKC/KEOPS complex subunit LAGE3-like NW_004955585 4764 6040 + 102003601 AGCD01075987;XM_005414426 XP_005414483 MODEL 8982458 pseudo LOC102012495 quinone oxidoreductase pseudogene NW_004955405 19872 21878 + 102012495 AGCD01004551 MODEL 8873723 protein-coding Elob elongin B ENCODES a protein that exhibits protein-containing complex binding (ortholog); transcription coactivator activity (ortholog); transcription corepressor binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); target-directed miRNA degradation (ortholog); transcription initiation at RNA polymerase II promoter (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN Cul2-RING ubiquitin ligase complex (ortholog); Cul5-RING ubiquitin ligase complex (ortholog); elongin complex (ortholog) NW_004955442 14498666 14501895 - 102015897 AGCD01037821;GBCQ01007574;GBDF01006908;XM_005391402 XP_005391459 MODEL 8822598 pseudo LOC102011274 translocation protein SEC62 pseudogene NW_004955453 11024593 11120561 + 102011274 AGCD01044797;AGCD01044798;AGCD01044799;AGCD01044800 MODEL 8951990 protein-coding Pck1 phosphoenolpyruvate carboxykinase 1 ENCODES a protein that exhibits carboxylic acid binding (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN cellular hyperosmotic response (ortholog); cellular hyperosmotic salinity response (ortholog); cellular hypotonic response (ortholog); PARTICIPATES IN forkhead class A signaling pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); celiac disease (ortholog); Chronic Intermittent Hypoxia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955445 1909012 1914032 - 102003594 AGCD01039347;GBDI01062602;XM_005392250 XP_005392307 MODEL 8763806 protein-coding Slc36a2 solute carrier family 36 member 2 ENCODES a protein that exhibits amino acid:proton symporter activity (ortholog); glycine transmembrane transporter activity (ortholog); L-alanine transmembrane transporter activity (ortholog); INVOLVED IN amino acid export across plasma membrane (ortholog); glycine transport (ortholog); L-alanine transport (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Glycinuria with or without Oxalate Urolithiasis (ortholog); GM2 gangliosidosis, AB variant (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog); recycling endosome membrane (ortholog) NW_004955408 2363416 2392210 + 102015694 AGCD01008006;GBCB01006475;XM_005376052;XM_005376053;XM_005376054;XM_005376055 XP_005376109;XP_005376110;XP_005376111;XP_005376112 MODEL 8902365 protein-coding Sema5b semaphorin 5B INVOLVED IN axon extension (ortholog); detection of light stimulus involved in visual perception (ortholog); neuron projection extension (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Primary Lymphedema with Myelodysplasia (ortholog) NW_004955427 22109946 22219497 - 102013432 AGCD01027464;AGCD01027465;GBCQ01113375;XM_005386522;XM_005386523;XM_013515029 XP_005386579;XP_005386580;XP_013370483 MODEL 8839928 pseudo LOC102011280 probable methyltransferase-like protein 15 NW_004955457 7384810 7385987 - 102011280 AGCD01046877 MODEL 8982157 protein-coding Trim2 tripartite motif containing 2 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH axonal neuropathy (ortholog); Charcot-Marie-Tooth disease type 2R (ortholog); osteoarthritis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955471 7523895 7698436 + 102029852 AGCD01053154;AGCD01053155;AGCD01053156;AGCD01053157;AGCD01053158;AGCD01053159;AGCD01053160;GBCQ01127466;XM_005400911;XM_005400912;XM_005400913;XM_005400914;XM_005400915;XM_005400916;XM_005400917;XM_005400918;XM_005400920;XM_005400921;XM_013522895;XM_013522896 XP_005400968;XP_005400969;XP_005400970;XP_005400971;XP_005400972;XP_005400973;XP_005400974;XP_005400975;XP_005400977;XP_005400978;XP_013378349;XP_013378350 MODEL 9014617 protein-coding Pdzk1 PDZ domain containing 1 ENCODES a protein that exhibits PDZ domain binding (ortholog); protein-containing complex binding (ortholog); scavenger receptor binding (ortholog); INVOLVED IN carnitine transmembrane transport (ortholog); in utero embryonic development (ortholog); positive regulation of protein localization to membrane (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Breast Neoplasms (ortholog); cataract 46 juvenile-onset (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog) NW_004955568 405697 436346 + 102008785 AGCD01074514;GBCQ01008166;XM_005413444;XM_005413447 XP_005413501;XP_005413504 MODEL 8949683 protein-coding Poll DNA polymerase lambda ENCODES a protein that exhibits 5'-deoxyribose-5-phosphate lyase activity (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN base-excision repair, gap-filling (ortholog); DNA biosynthetic process (ortholog); double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH HYPOPLASTIC FEMURS AND PELVIS (ortholog); split hand-foot malformation (ortholog); FOUND IN nucleoplasm (ortholog); site of double-strand break (ortholog) NW_004955485 8691886 8700681 + 102025467 AGCD01058724;GBDJ01225502;XM_005403869;XM_005403870;XM_013504091 XP_005403926;XP_005403927;XP_013359545 MODEL 8735375 protein-coding Nasp nuclear autoantigenic sperm protein ENCODES a protein that exhibits histone binding (ortholog); histone chaperone activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN blastocyst development (ortholog); DNA replication-dependent chromatin assembly (ortholog); G1/S transition of mitotic cell cycle (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955464 12667050 12697021 - 102027729 AGCD01050214;AGCD01050215;AGCD01050216;GBDI01140112;XM_005398699;XM_005398700;XM_005398701 XP_005398756;XP_005398757;XP_005398758 MODEL 8710483 protein-coding LOC102006745 chromosome unknown open reading frame, human C5orf24 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955408 30043402 30054015 + 102006745 AGCD01008792;AGCD01008793;GBDI01171520;XM_005376466;XM_005376467;XM_005376468 XP_005376523;XP_005376524;XP_005376525 MODEL 8897538 ncrna LOC102024162 uncharacterized LOC102024162 NW_004955437 1572617 1575264 - 102024162 AGCD01034218;GBDF01220897;XR_261824 MODEL 39131342 protein-coding LEKR1 leucine, glutamate and lysine rich 1 8979212 protein-coding LOC102010872 zinc finger protein 14-like NW_004955457 13021955 13040077 - 102010872 AGCD01047034;AGCD01047035;GBDF01018457;XM_005397067 XP_005397124 MODEL 8739011 protein-coding Phf7 PHD finger protein 7 INVOLVED IN negative regulation of osteoclast proliferation (ortholog); ASSOCIATED WITH congenital disorder of glycosylation In (ortholog); KURY-ISIDOR SYNDROME (ortholog); sensorineural hearing loss (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); nuclear speck (ortholog) NW_004955430 2400866 2413188 + 102016833 AGCD01029165;GBDF01008480;XM_005415258 XP_005415315 MODEL 8788001 protein-coding Pthlh parathyroid hormone like hormone ENCODES a protein that exhibits hormone activity (ortholog); peptide hormone receptor binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); bone mineralization (ortholog); chondrocyte differentiation (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH achondroplasia (ortholog); acute necrotizing pancreatitis (ortholog); alcoholic pancreatitis (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); nucleoplasm (ortholog) NW_004955505 6834533 6846909 + 102018623 AGCD01065187;GBBH01206343;GBDK01026033;XM_005407152 XP_005407209 MODEL 8933502 protein-coding Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 ENCODES a protein that exhibits 3',5'-nucleotide bisphosphate phosphatase activity (ortholog); 3'-nucleotidase activity (ortholog); INVOLVED IN chondrocyte development (ortholog); embryonic digit morphogenesis (ortholog); endochondral ossification (ortholog); ASSOCIATED WITH chondrodysplasia with joint dislocations gPAPP type (ortholog); osteochondrodysplasia (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); nuclear body (ortholog) NW_004955454 15899820 15918222 - 102007970 AGCD01045497;AGCD01045498;GBDF01119202;GBDK01128450;XM_013520210;XM_013520211 XP_013375664;XP_013375665 MODEL 8912587 protein-coding LOC102006372 olfactory receptor 13G1-like NW_004955507 6393509 6394453 + 102006372 AGCD01065713;XM_005407722 XP_005407779 MODEL 8869807 protein-coding Ranbp17 RAN binding protein 17 ASSOCIATED WITH autism spectrum disorder (ortholog); hydrocephalus (ortholog) NW_004955408 23777501 24092993 + 102019032 AGCD01008590;AGCD01008591;AGCD01008592;AGCD01008593;AGCD01008594;GBDF01045449;XM_005376323;XM_005376324;XM_005376325;XM_005376326 XP_005376380;XP_005376381;XP_005376382;XP_005376383 MODEL 9005393 protein-coding LOC102005326 zinc finger protein 271-like NW_004955402 22009497 22049009 + 102005326 AGCD01000595;AGCD01000596;AGCD01000597;AGCD01000598;GBDJ01165251;XM_005372797;XM_005372798;XM_005372799;XM_013509230;XM_013509319;XM_013509375;XM_013509440 XP_005372854;XP_005372855;XP_005372856;XP_013364684;XP_013364773;XP_013364829;XP_013364894 MODEL 9005175 protein-coding Pitx1 paired like homeodomain 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN branchiomeric skeletal muscle development (ortholog); cartilage development (ortholog); embryonic hindlimb morphogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Carpal Synostosis with Dysplastic Elbow Joints and Brachydactyly (ortholog); clubfoot (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955408 30197374 30202887 - 102029268 AGCD01008801;GBBH01032244;GBDJ01050164;XM_013507081 XP_013362535 MODEL 8912913 ncrna LOC102018892 uncharacterized LOC102018892 NW_004955455 1322663 1342562 + 102018892 AGCD01045573;AGCD01045574;GBDF01128397;XR_001236278;XR_001236279;XR_001236280;XR_001236281;XR_262813 MODEL 9011408 protein-coding Thbs4 thrombospondin 4 ENCODES a protein that exhibits calcium ion binding (ortholog); collagen binding (ortholog); fibronectin binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); endothelial cell-cell adhesion (ortholog); myoblast migration (ortholog); ASSOCIATED WITH Hirschsprung's disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN basement membrane (ortholog); collagen-containing extracellular matrix (ortholog); endoplasmic reticulum (ortholog) NW_004955425 21072873 21117061 - 102024029 AGCD01025781;GBBH01063682;XM_005386101 XP_005386158 MODEL 9009966 protein-coding Palb2 partner and localizer of BRCA2 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); apoptotic process (ortholog); double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN nuclear factor, erythroid 2 like 2 signaling pathway; ASSOCIATED WITH anaplastic ependymoma (ortholog); B-lymphoblastic leukemia/lymphoma with ETV6-RUNX1 (ortholog); basal cell carcinoma (ortholog); FOUND IN DNA repair complex (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955493 2149053 2175482 - 102022825 AGCD01060929;AGCD01060930;AGCD01060931;AGCD01060932;GBDF01281087;XM_013504896;XM_013504897 XP_013360350;XP_013360351 MODEL 8740920 protein-coding LOC102009376 olfactory receptor 13J1 ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog) NW_004955472 452846 454056 + 102009376 AGCD01053339;XM_005401175 XP_005401232 MODEL 8787129 protein-coding Smyd2 SET and MYND domain containing 2 ENCODES a protein that exhibits histone H3K36 methyltransferase activity (ortholog); p53 binding (ortholog); protein-lysine N-methyltransferase activity (ortholog); INVOLVED IN heart development (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN histone modification pathway; methionine cycle/metabolic pathway; p53 signaling pathway; ASSOCIATED WITH Esophageal Neoplasms (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955406 3467123 3509156 - 102013144 AGCD01005672;GBDI01176706;XM_005375447 XP_005375504 MODEL 8718061 protein-coding LOC102021471 secretoglobin family 1D member-like NW_004955511 6342089 6346015 + 102021471 AGCD01066602;GBCB01129881;XM_013506417 XP_013361871 MODEL 8870579 protein-coding LOC102018514 L-xylulose reductase NW_004955506 1135924 1137671 + 102018514 AGCD01065246;GBDK01008359;XM_005407226 XP_005407283 MODEL 8926149 protein-coding LOC102008229 vomeronasal type-1 receptor 48-like NW_004955421 21911814 21912737 + 102008229 AGCD01022124;XM_005383932 XP_005383989 MODEL 8744987 protein-coding Slc36a3 solute carrier family 36 member 3 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); GM2 gangliosidosis, AB variant (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955408 2395045 2423797 + 102016670 AGCD01008006;GBDF01155539;XM_005376056 XP_005376113 MODEL 8805071 protein-coding Rab11b RAB11B, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN amyloid-beta clearance by transcytosis (ortholog); cellular response to acidic pH (ortholog); constitutive secretory pathway (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); phagocytic vesicle (ortholog) NW_004955563 1008267 1017315 - 102014839 AGCD01074102;AGCD01074103;AGCD01074104;GBBH01031204;GBCE01001173;XM_005413131 XP_005413188 MODEL 8786660 pseudo LOC102023179 olfactory receptor 1030-like NW_004955511 1688075 1689089 - 102023179 AGCD01066377 MODEL 8749502 protein-coding Vwde von Willebrand factor D and EGF domains ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955432 18687192 18752679 - 102003368 AGCD01031157;AGCD01031158;AGCD01031159;XM_005388152 XP_005388209 MODEL 8942854 protein-coding Osbpl2 oxysterol binding protein like 2 INVOLVED IN regulation of presynaptic cytosolic calcium ion concentration (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 67 (ortholog); FOUND IN glutamatergic synapse (ortholog); presynaptic active zone cytoplasmic component (ortholog) NW_004955528 1770804 1807199 - 102030234 AGCD01069571;AGCD01069572;GBDF01088037;XM_005410027;XM_005410028;XM_005410029 XP_005410084;XP_005410085;XP_005410086 MODEL 10293839 ncrna LOC106149800 uncharacterized LOC106149800 NW_004955453 14133586 14140330 - 106149800 AGCD01044858;XR_001236205 MODEL 8824737 protein-coding Snorc secondary ossification center associated regulator of chondrocyte maturation INVOLVED IN cartilage development (ortholog); ASSOCIATED WITH Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog); FOUND IN cell periphery (ortholog); collagen-containing extracellular matrix (ortholog) NW_004955453 3187624 3192605 - 102012921 AGCD01044653;AGCD01044654;GBBH01177124;XM_013519900 XP_013375354 MODEL 8812177 pseudo LOC102017366 olfactory receptor 5T2-like NW_004955511 1302880 1303815 + 102017366 AGCD01066362 MODEL 9016095 ncrna LOC102011691 uncharacterized LOC102011691 NW_004955432 22073703 22077752 + 102011691 AGCD01031246;GBDF01194467;XR_001234645 MODEL 8826602 protein-coding LOC102010478 translation initiation factor IF-2-like NW_004955415 26656571 26658785 + 102010478 AGCD01016602;GBDF01082702;XM_013512111 XP_013367565 MODEL 8792407 protein-coding LOC102010135 potassium channel subfamily U member 1 NW_004955463 12558868 12692079 + 102010135 AGCD01049855;AGCD01049856;GBDF01257773;XM_005398473 XP_005398530 MODEL 8920872 ncrna LOC102012499 uncharacterized LOC102012499 NW_004955407 30651094 30671049 - 102012499 AGCD01007639;GBDJ01066236;XR_001231688;XR_259595 MODEL 8969637 protein-coding Top6bl TOP6B like initiator of meiotic double strand breaks INVOLVED IN meiotic DNA double-strand break formation (ortholog); reciprocal meiotic recombination (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Hydatidiform Mole, Recurrent, 4 (ortholog); immunodeficiency 90 (ortholog) NW_004955422 18541350 18726269 - 102019710 AGCD01022951;AGCD01022952;AGCD01022953;AGCD01022954;AGCD01022955;AGCD01022956;AGCD01022957;AGCD01022958;AGCD01022959;AGCD01022960;GBDF01145171;XM_013513887;XM_013513888;XM_013513889;XM_013513890;XM_013513891;XM_013513892;XM_013513893;XM_013513894;XM_013513895;XM_013513896;XM_013513897;XM_013513898;XM_013513899;XM_013513900;XM_013513901;XM_013513902 XP_013369341;XP_013369342;XP_013369343;XP_013369344;XP_013369345;XP_013369346;XP_013369347;XP_013369348;XP_013369349;XP_013369350;XP_013369351;XP_013369352;XP_013369353;XP_013369354;XP_013369355;XP_013369356 MODEL 8863892 pseudo LOC102007875 AP-3 complex subunit sigma-1 pseudogene NW_004955412 13389131 13390789 - 102007875 AGCD01012835 MODEL 8726904 protein-coding Eloc elongin C ENCODES a protein that exhibits protein-containing complex binding (ortholog); transcription corepressor binding (ortholog); INVOLVED IN positive regulation of transcription elongation by RNA polymerase II (ortholog); protein ubiquitination (ortholog); target-directed miRNA degradation (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2K (ortholog); renal cell carcinoma (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog); elongin complex (ortholog); VCB complex (ortholog) NW_004955444 6400721 6415881 + 102020296 AGCD01038864;AGCD01038865;GBDF01004742;XM_005392079;XM_005392080 XP_005392136;XP_005392137 MODEL 8963976 protein-coding Rgs12 regulator of G protein signaling 12 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GTPase activator activity (ortholog); GTPase regulator activity (ortholog); INVOLVED IN negative regulation of G protein-coupled receptor signaling pathway (ortholog); termination of G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN calcium signaling pathway via the calcium-sensing receptor; G protein mediated signaling pathway via Galpha12/Galpha13 family; ASSOCIATED WITH cherubism (ortholog); Ellis-Van Creveld syndrome (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN apical dendrite (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955514 2081575 2154414 + 102006701 AGCD01067072;AGCD01067073;AGCD01067074;GBBH01064970;GBDF01306453;XM_013506795 XP_013362249 MODEL 8829283 protein-coding Slc9c1 solute carrier family 9 member C1 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN motile cilium (ortholog) NW_004955427 12541396 12644543 - 102025708 AGCD01027218;AGCD01027219;AGCD01027220;AGCD01027221;AGCD01027222;GBDF01051841;XM_005386384;XM_005386385;XM_013515039 XP_005386441;XP_005386442;XP_013370493 MODEL 8926338 protein-coding LOC102015457 uncharacterized LOC102015457 NW_004955441 9495483 9512225 - 102015457 AGCD01037022;GBDK01417984;XM_005391046 XP_005391103 MODEL 10164894 protein-coding LOC106146970 collagen alpha-2(I) chain-like NW_004955509 4418478 4420626 + 106146970 AGCD01066064;XM_013506288 XP_013361742 MODEL 8803725 ncrna LOC102018521 uncharacterized LOC102018521 NW_004955515 3179303 3190163 + 102018521 AGCD01067274;GBDI01275277;XR_264522;XR_264523 MODEL 8822187 protein-coding Rraga Ras related GTP binding A ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); phosphoprotein binding (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to amino acid stimulus (ortholog); cellular response to nutrient levels (ortholog); PARTICIPATES IN mTOR signaling pathway; FOUND IN cytoplasm (ortholog); FNIP-folliculin RagC/D GAP (ortholog); GATOR1 complex (ortholog) NW_004955434 21509528 21510885 + 102025158 AGCD01032632;GBBH01032722;GBCQ01004306;XM_005388726 XP_005388783 MODEL 39133678 snorna U3 Small nucleolar RNA U3 8864278 protein-coding LOC102021473 lipocalin NW_004955513 4813800 4818133 - 102021473 AGCD01066940;GBBH01225941;XM_005408547 XP_005408604 MODEL 8784277 protein-coding Smyd3 SET and MYND domain containing 3 ENCODES a protein that exhibits histone H3K36 dimethyltransferase activity (ortholog); histone H4 methyltransferase activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); establishment of protein localization (ortholog); myotube cell development (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH amenorrhea (ortholog); amphetamine abuse (ortholog); developmental and epileptic encephalopathy 54 (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955406 8768365 9417612 - 102010332 AGCD01005807;AGCD01005808;AGCD01005809;AGCD01005810;AGCD01005811;AGCD01005812;AGCD01005813;AGCD01005814;AGCD01005815;AGCD01005816;AGCD01005817;AGCD01005818;AGCD01005819;GBCE01049807;XM_005374789 XP_005374846 MODEL 8849394 pseudo LOC102024163 60S ribosomal protein L30-like NW_004955534 1136896 1137291 + 102024163 AGCD01070487 MODEL 8787777 gene LOC102010877 T-cell receptor alpha chain V region HPB-MLT-like NW_004955409 38439384 38453331 - 102010877 AGCD01010560;XR_259812 MODEL 9031211 protein-coding Prkag1 protein kinase AMP-activated non-catalytic subunit gamma 1 ENCODES a protein that exhibits ADP binding (ortholog); AMP binding (ortholog); AMP-activated protein kinase activity (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); import into nucleus (ortholog); regulation of catalytic activity (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Kabuki syndrome (ortholog); FOUND IN nucleotide-activated protein kinase complex (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955500 7834550 7850412 - 102013849 AGCD01063952;AGCD01063953;AGCD01063954;GBDK01126945;XM_005406688;XM_013505682;XM_013505684;XM_013505685 XP_005406745;XP_013361136;XP_013361138;XP_013361139 MODEL 9046865 protein-coding Lekr1 leucine, glutamate and lysine rich 1 NW_004955448 7834824 8030085 + 102020174 AGCD01041426;AGCD01041427;AGCD01041428;AGCD01041429;AGCD01041430;AGCD01041431;AGCD01041432;AGCD01041433;GBBH01145521;XM_005393081;XM_005393082;XM_005393083;XM_005393084;XM_005393085 XP_005393138;XP_005393139;XP_005393140;XP_005393141;XP_005393142 MODEL 9067189 protein-coding Polm DNA polymerase mu INVOLVED IN B cell differentiation (ortholog); somatic hypermutation of immunoglobulin genes (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955456 7886182 7893800 + 102022672 AGCD01046435;GBDI01125354;XM_005396675;XM_005396676;XM_005396677;XM_005396678;XM_005396679 XP_005396732;XP_005396733;XP_005396734;XP_005396735;XP_005396736 MODEL 8803459 protein-coding Rbmx2 RNA binding motif protein X-linked 2 INVOLVED IN mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN endoplasmic reticulum (ortholog); nuclear membrane (ortholog); nucleolus (ortholog) NW_004955473 4654257 4664419 - 102006339 AGCD01053954;GBDF01075377;XM_005401234 XP_005401291 MODEL 9023168 protein-coding Spry4 sprouty RTK signaling antagonist 4 ENCODES a protein that exhibits protein kinase inhibitor activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); negative regulation of MAP kinase activity (ortholog); negative regulation of substrate adhesion-dependent cell spreading (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); amenorrhea (ortholog); disorder of sexual development (ortholog); FOUND IN cytoplasm (ortholog) NW_004955415 11489439 11504247 + 102027401 AGCD01016163;GBBH01086221;XM_005380708;XM_005380709 XP_005380765;XP_005380766 MODEL 15036850 trna Trnay-aua transfer RNA tyrosine (anticodon AUA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978818 8718506 pseudo LOC102010880 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial pseudogene NW_004955410 29866734 29868389 - 102010880 AGCD01011297 MODEL 8904583 protein-coding Prss54 serine protease 54 ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); developmental and epileptic encephalopathy (ortholog) NW_004955433 15775492 15788128 - 102011233 AGCD01031765;GBDF01046812;XM_013516274 XP_013371728 MODEL 8805685 protein-coding LOC102006374 olfactory receptor 5AL1-like NW_004955511 1550026 1550967 + 102006374 AGCD01066371;XM_005407965 XP_005408022 MODEL 8872046 protein-coding Slc24a1 solute carrier family 24 member 1 ENCODES a protein that exhibits calcium, potassium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); intracellular calcium ion homeostasis (ortholog); potassium ion transmembrane transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; visual phototransduction pathway; ASSOCIATED WITH Bloom syndrome (ortholog); Cerebral Hemorrhage (ortholog); colorectal cancer (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955450 9850170 9881172 - 102005093 AGCD01042600;GBBH01101110;XM_005393714;XM_005393715;XM_005393716;XM_013518968;XM_013518969 XP_005393771;XP_005393772;XP_005393773;XP_013374422;XP_013374423 MODEL 8917790 protein-coding Bptf bromodomain PHD finger transcription factor ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); brain development (ortholog); cellular response to nerve growth factor stimulus (ortholog); PARTICIPATES IN histone modification pathway; ISWI family mediated chromatin remodeling pathway; ASSOCIATED WITH alcohol dependence (ortholog); Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN ATPase complex (ortholog); cell body (ortholog); chromatin (ortholog) NW_004955478 6990816 7088751 + 102026861 AGCD01055938;AGCD01055939;AGCD01055940;AGCD01055941;GBBH01089810;GBCQ01152099;XM_013503185;XM_013503186;XM_013503187;XM_013503188;XM_013503189;XM_013503190;XM_013503191;XM_013503192;XM_013503193;XM_013503194;XM_013503195 XP_013358639;XP_013358640;XP_013358641;XP_013358642;XP_013358643;XP_013358644;XP_013358645;XP_013358646;XP_013358647;XP_013358648;XP_013358649 MODEL 8908482 pseudo LOC102018893 putative dimethylaniline monooxygenase [N-oxide-forming] 6 NW_004955406 11808291 11826736 + 102018893 AGCD01005896;XM_005375459 MODEL 8734614 protein-coding Ptk2 protein tyrosine kinase 2 ENCODES a protein that exhibits actin binding (ortholog); identical protein binding (ortholog); integrin binding (ortholog); INVOLVED IN angiogenesis (ortholog); axonogenesis (ortholog); blood vessel development (ortholog); PARTICIPATES IN integrin mediated signaling pathway; long term potentiation; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); Breast Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); ciliary basal body (ortholog) NW_004955461 14337914 14622779 - 102025551 AGCD01049055;AGCD01049056;GBBH01185452;GBCB01040518;XM_005398062;XM_005398063;XM_013521315;XM_013521316;XM_013521317;XM_013521318;XM_013521319;XM_013521320;XM_013521321;XM_013521322;XM_013521323 XP_005398119;XP_005398120;XP_013376769;XP_013376770;XP_013376771;XP_013376772;XP_013376773;XP_013376774;XP_013376775;XP_013376776;XP_013376777 MODEL 8805042 protein-coding Pck2 phosphoenolpyruvate carboxykinase 2, mitochondrial ENCODES a protein that exhibits manganese ion binding (ortholog); phosphoenolpyruvate carboxykinase (GTP) activity (ortholog); phosphoenolpyruvate carboxykinase activity (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to tumor necrosis factor (ortholog); gluconeogenesis (ortholog); PARTICIPATES IN gluconeogenesis pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); COVID-19 (ortholog); Endotoxemia (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955409 36288402 36296761 - 102013806 AGCD01010454;GBCQ01006485;XM_005377053 XP_005377110 MODEL 9021688 protein-coding Sema6a semaphorin 6A ENCODES a protein that exhibits identical protein binding (ortholog); semaphorin receptor binding (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN axon guidance (ortholog); cell surface receptor signaling pathway (ortholog); cellular response to vascular endothelial growth factor stimulus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN plasma membrane (ortholog) NW_004955408 36219814 36344131 - 102028382 AGCD01008979;AGCD01008980;GBDF01280169;XM_005376537;XM_005376538;XM_005376540;XM_005376541;XM_013506973;XM_013506976 XP_005376594;XP_005376595;XP_005376597;XP_005376598;XP_013362427;XP_013362430 MODEL 8811919 ncrna LOC102009377 uncharacterized LOC102009377 NW_004955474 7388629 7400816 + 102009377 AGCD01054519;GBDF01303398;XR_001230720;XR_263601 MODEL 8870275 protein-coding Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955452 9759452 9793105 - 102007081 AGCD01044260;AGCD01044261;GBBH01208189;XM_005395015 XP_005395072 MODEL 9005672 protein-coding Nat10 N-acetyltransferase 10 ENCODES a protein that exhibits DNA polymerase binding (ortholog); mRNA N-acetyltransferase activity (ortholog); N-acetyltransferase activity (ortholog); INVOLVED IN negative regulation of telomere maintenance via telomerase (ortholog); positive regulation of translation (ortholog); protein acetylation (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN midbody (ortholog); nucleolus (ortholog); small-subunit processome (ortholog) NW_004955422 12085970 12122644 - 102018295 AGCD01022776;GBDI01255931;XM_005384148;XM_013514110 XP_005384205;XP_013369564 MODEL 9048353 protein-coding LOC102003603 polyadenylate-binding protein 1-like 2 NW_004955591 918513 919451 - 102003603 AGCD01076286;XM_005414600 XP_005414657 MODEL 8748975 protein-coding Rab11fip1 RAB11 family interacting protein 1 INVOLVED IN negative regulation of adiponectin secretion (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 54 (ortholog); hypogonadotropic hypogonadism 2 with or without anosmia (ortholog); paraplegia (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955463 13565956 13600016 - 102013808 AGCD01049872;AGCD01049873;AGCD01049874;AGCD01049875;GBCE01186560;XM_005398418;XM_005398419 XP_005398475;XP_005398476 MODEL 126903057 snorna SNORD100 small nucleolar RNA, C/D box 100 8717837 ncrna LOC102010136 uncharacterized LOC102010136 NW_004955411 9963098 9981570 - 102010136 AGCD01011768;GBDF01305717;XR_259928 MODEL 8704333 ncrna LOC102011284 uncharacterized LOC102011284 NW_004955460 12592756 12593305 - 102011284 AGCD01048661;GBDF01041740;XR_263061 MODEL 9036877 pseudo LOC102008236 tubulin alpha-1C chain-like NW_004955495 3000619 3002493 - 102008236 AGCD01061814 MODEL 9029890 protein-coding Pald1 phosphatase domain containing paladin 1 ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 2 (ortholog); visceral heterotaxy 5 (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955437 20721328 20799090 - 102012242 AGCD01034880;AGCD01034881;AGCD01034882;AGCD01034883;AGCD01034884;GBCE01155170;XM_005390053;XM_005390054;XM_005390055;XM_005390056 XP_005390110;XP_005390111;XP_005390112;XP_005390113 MODEL 8831598 protein-coding Poln DNA polymerase nu ENCODES a protein that exhibits cyclin binding (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN double-strand break repair via homologous recombination (ortholog); interstrand cross-link repair (ortholog); translesion synthesis (ortholog); ASSOCIATED WITH cherubism (ortholog); Ellis-Van Creveld syndrome (ortholog); prostate cancer (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955514 1214867 1342172 - 102022319 AGCD01067041;AGCD01067042;AGCD01067043;AGCD01067044;AGCD01067045;AGCD01067046;AGCD01067047;GBDJ01030074;XM_013506823;XM_013506824;XM_013506825;XM_013506826;XM_013506827;XM_013506829 XP_013362277;XP_013362278;XP_013362279;XP_013362280;XP_013362281;XP_013362283 MODEL 10356255 pseudo LOC106146971 39S ribosomal protein L42, mitochondrial pseudogene NW_004955509 5475189 5475629 + 106146971 AGCD01066102 MODEL 8849871 protein-coding Pdzk1ip1 PDZK1 interacting protein 1 ASSOCIATED WITH Prostatic Neoplasms (ortholog) NW_004955464 11339800 11344492 + 102009921 AGCD01050144;GBDJ01091555;XM_005398640 XP_005398697 MODEL 8713164 protein-coding Prss56 serine protease 56 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); INVOLVED IN camera-type eye development (ortholog); proteolysis (ortholog); ASSOCIATED WITH angle-closure glaucoma (ortholog); cholangiocarcinoma (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955453 3440871 3446090 - 102005105 AGCD01044658;AGCD01044659;GBBH01030283;GBBH01042828;XM_013519998 XP_013375452 MODEL 9052373 protein-coding Slc36a4 solute carrier family 36 member 4 ENCODES a protein that exhibits L-alanine transmembrane transporter activity (ortholog); L-proline transmembrane transporter activity (ortholog); L-tryptophan transmembrane transporter activity (ortholog); INVOLVED IN L-alanine transport (ortholog); proline transport (ortholog); tryptophan transport (ortholog); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; ASSOCIATED WITH intellectual disability (ortholog); FOUND IN lysosomal membrane (ortholog) NW_004955414 1236179 1286680 + 102028078 AGCD01014760;GBCE01159453;XM_005379715;XM_005379716;XM_005379717;XM_005379718;XM_005379719;XM_013512056;XM_013512057 XP_005379772;XP_005379773;XP_005379774;XP_005379775;XP_005379776;XP_013367510;XP_013367511 MODEL 9046024 protein-coding Trim21 tripartite motif containing 21 ENCODES a protein that exhibits identical protein binding (ortholog); transcription coactivator activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); innate immune response (ortholog); negative regulation of innate immune response (ortholog); ASSOCIATED WITH delta beta-thalassemia (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); nucleoplasm (ortholog) NW_004955414 20066109 20077331 - 102014130 AGCD01015355;GBCQ01032815;XM_005380044;XM_005380045;XR_001233160 XP_005380101;XP_005380102 MODEL 39133679 snorna U3 Small nucleolar RNA U3 8910603 ncrna LOC102017374 uncharacterized LOC102017374 NW_004955433 14373966 14376275 - 102017374 AGCD01031721;GBCQ01013503;XR_261595 MODEL 8901851 pseudo LOC102011694 casein kinase I NW_004955434 9624730 9625478 - 102011694 AGCD01032306;XR_261649 MODEL 8774521 ncrna LOC102010491 uncharacterized LOC102010491 NW_004955486 2457928 2464475 + 102010491 AGCD01058997;GBDF01144358;XR_263941 MODEL 8767672 ncrna LOC102007879 uncharacterized LOC102007879 NW_004955413 30303353 30306413 - 102007879 AGCD01014605;GBDJ01200944;XR_260137 MODEL 8804869 protein-coding Lelp1 late cornified envelope like proline rich 1 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog) NW_004955592 219771 222770 - 102008483 AGCD01076301;GBDF01008405;XM_005414608 XP_005414665 MODEL 8792146 protein-coding Nat14 N-acetyltransferase 14 (putative) NW_004955567 809832 812313 - 102021288 AGCD01074433;GBDI01125613;XM_013509301 XP_013364755 MODEL 9011666 pseudo LOC102006747 spermatid perinuclear RNA-binding protein-like NW_004955459 3238938 3257604 - 102006747 AGCD01048011;AGCD01048012 MODEL 8791816 ncrna LOC102010145 uncharacterized LOC102010145 NW_004955414 6341018 6344268 - 102010145 AGCD01014918;GBDK01371346;XR_001233178;XR_260156 MODEL 8859125 protein-coding LOC102006375 olfactory receptor 5B3-like NW_004955511 3661944 3662882 - 102006375 AGCD01066472;XM_005408047 XP_005408104 MODEL 8787441 protein-coding Slc24a2 solute carrier family 24 member 2 ENCODES a protein that exhibits calcium channel activity (ortholog); calcium, potassium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion import (ortholog); calcium ion import across plasma membrane (ortholog); calcium ion transmembrane transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; visual phototransduction pathway; FOUND IN membrane (ortholog); plasma membrane (ortholog); postsynapse (ortholog) NW_004955434 21871319 22091125 - 102028225 AGCD01032658;AGCD01032659;AGCD01032660;GBCB01100094;GBCQ01087320;XM_013516390 XP_013371844 MODEL 10340096 ncrna LOC106149801 uncharacterized LOC106149801 NW_004955453 15226151 15227030 - 106149801 AGCD01044890;GBDJ01223654;XR_001236206 MODEL 8815011 pseudo LOC102009380 40S ribosomal protein S8 pseudogene NW_004955415 27385133 27385744 + 102009380 AGCD01016630 MODEL 8755061 protein-coding LOC102023180 pancreatic triacylglycerol lipase NW_004955431 21320026 21336388 + 102023180 AGCD01030495;GBBH01130552;XM_005387851;XM_013515758 XP_005387908;XP_013371212 MODEL 8852667 protein-coding Vwf von Willebrand factor ENCODES a protein that exhibits collagen binding (ortholog); identical protein binding (ortholog); immunoglobulin binding (ortholog); INVOLVED IN activation of blood coagulation via clotting cascade (ortholog); blood coagulation (ortholog); cell adhesion (ortholog); PARTICIPATES IN platelet aggregation pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); Aortic Injuries (ortholog); atrial fibrillation (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); endoplasmic reticulum (ortholog); external side of plasma membrane (ortholog) NW_004955413 3672470 3825588 - 102010886 AGCD01013578;AGCD01013579;AGCD01013580;AGCD01013581;AGCD01013582;AGCD01013583;AJ238385;GBDK01001413;XM_005378754;XM_005378755 CAB86185;XP_005378811;XP_005378812 MODEL 8762369 ncrna LOC102021474 uncharacterized LOC102021474 NW_004955433 10006841 10023375 + 102021474 AGCD01031621;GBDF01126170;XR_001234700;XR_261577;XR_261578 MODEL 8908494 protein-coding Phf8 PHD finger protein 8 ENCODES a protein that exhibits chromatin binding (ortholog); histone demethylase activity (ortholog); histone H3K27me2/H3K27me3 demethylase activity (ortholog); INVOLVED IN G1/S transition of mitotic cell cycle (ortholog); negative regulation of rDNA heterochromatin formation (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Atkin Syndrome (ortholog); autistic disorder (ortholog); Cornelia de Lange syndrome 2 (ortholog); FOUND IN nuclear membrane (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955475 1105619 1230758 - 102019908 AGCD01054733;AGCD01054734;AGCD01054735;AGCD01054736;AGCD01054737;AGCD01054738;GBCB01086765;XM_005401514;XM_005401515;XM_005401516 XP_005401571;XP_005401572;XP_005401573 MODEL 39131520 protein-coding PALLD palladin, cytoskeletal associated protein 9018057 protein-coding Plg plasminogen ENCODES a protein that exhibits apolipoprotein binding (ortholog); endopeptidase activity (ortholog); enzyme binding (ortholog); INVOLVED IN blood coagulation (ortholog); extracellular matrix disassembly (ortholog); fibrinolysis (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); acute kidney failure (ortholog); atypical hemolytic-uremic syndrome (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular space (ortholog) NW_004955439 20317814 20366724 + 102011248 AGCD01036109;AGCD01036110;AGCD01036111;GBDI01245139;XM_005390699;XM_005390700 XP_005390756;XP_005390757 MODEL 8798102 protein-coding LOC102003605 protein FAM127A NW_004955602 144599 145888 + 102003605 AGCD01076763;AGCD01076764;GBBH01002232;GBCQ01009918;XM_005414828 XP_005414885 MODEL 8977426 pseudo LOC102005328 peroxiredoxin-1 pseudogene NW_004955402 31453916 31455006 + 102005328 AGCD01000789 MODEL 8905457 trna Trnay-gua transfer RNA tyrosine (anticodon GUA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978819 AGCD01039088;AGCD01052488;AGCD01057606;AGCD01072575;AGCD01072578 MODEL 8847174 pseudo LOC102010891 ras-related protein Rab-43 pseudogene NW_004955413 12621970 12622932 - 102010891 AGCD01013994;XM_005379601 MODEL 9032728 protein-coding Elof1 elongation factor 1 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN transcription-coupled nucleotide-excision repair (ortholog); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog); FOUND IN chromosome (ortholog); nucleus (ortholog) NW_004955495 2403566 2406182 - 102026651 AGCD01061770;GBDF01005723;XM_005405674;XM_013505116;XM_013505117 XP_005405731;XP_013360570;XP_013360571 MODEL 9044015 protein-coding Rgs13 regulator of G protein signaling 13 INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); negative regulation of G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); Hyperparathyroidism 1 (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955406 30111770 30134605 + 102017840 AGCD01006358;AGCD01006359;GBDI01160957;XM_005375099;XM_005375100;XM_013521830 XP_005375156;XP_005375157;XP_013377284 MODEL 8737717 protein-coding Trim23 tripartite motif containing 23 ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN positive regulation of autophagy (ortholog); positive regulation of protein modification process (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); Golgi membrane (ortholog); lysosomal membrane (ortholog) NW_004955446 3480177 3509050 + 102019968 AGCD01040020;AGCD01040021;AGCD01040022;GBDJ01063114;XM_005392627 XP_005392684 MODEL 8854603 protein-coding LOC102015462 ankyrin repeat domain-containing protein 18A-like NW_004955556 26547 41723 + 102015462 AGCD01073156;AGCD01073157;AGCD01073158;XM_005412617 XP_005412674 MODEL 9025162 protein-coding Slc9c2 solute carrier family 9 member C2 (putative) ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); autoimmune lymphoproliferative syndrome (ortholog) NW_004955406 13734098 13838966 - 102006207 AGCD01005950;AGCD01005951;AGCD01005952;AGCD01005953;AGCD01005954;GBDF01119589;XM_013520788;XM_013520790 XP_013376242;XP_013376244 MODEL 8721786 pseudo LOC102011286 mitochondrial import inner membrane translocase subunit Tim9 pseudogene NW_004955410 11964895 11965083 - 102011286 AGCD01010838 MODEL 8910930 protein-coding Nat16 N-acetyltransferase 16 (putative) ASSOCIATED WITH Plasminogen Activator Inhibitor-1 Deficiency (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955456 16114681 16118249 + 102025213 AGCD01046690;XM_013520520 XP_013375974 MODEL 8707149 ncrna LOC102005329 uncharacterized LOC102005329 NW_004955602 418672 420204 - 102005329 AGCD01076784;GBDF01158942;XR_265157 MODEL 8805859 protein-coding Pclaf PCNA clamp associated factor ENCODES a protein that exhibits chromatin binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN centrosome cycle (ortholog); DNA damage response (ortholog); DNA replication (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); hepatocellular carcinoma (ortholog); FOUND IN centrosome (ortholog); nucleus (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955450 11072778 11082687 + 102017408 AGCD01042647;GBDJ01061984;XM_005393754;XM_013518866 XP_005393811;XP_013374320 MODEL 8701851 protein-coding Osbpl3 oxysterol binding protein like 3 ENCODES a protein that exhibits cholesterol binding (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytosol (ortholog); nuclear membrane (ortholog); perinuclear endoplasmic reticulum (ortholog) NW_004955410 26804475 26968985 - 102022370 AGCD01011203;AGCD01011204;AGCD01011205;AGCD01011206;GBCE01123093;GBCQ01151566;XM_013510601 XP_013366055 MODEL 8958675 ncrna LOC102018523 uncharacterized LOC102018523 NW_004955434 172998 207712 + 102018523 AGCD01031998;AGCD01031999;AGCD01032000;GBCQ01181420;XR_001234825;XR_001234826;XR_261605 MODEL 8779862 protein-coding LOC102006376 olfactory receptor 5L1-like NW_004955511 671617 672567 + 102006376 AGCD01066337;XM_005408205 XP_005408262 MODEL 8981518 protein-coding Ptk2b protein tyrosine kinase 2 beta ENCODES a protein that exhibits 3-phosphoinositide-dependent protein kinase binding (ortholog); calcium/calmodulin-dependent protein kinase activity (ortholog); enzyme binding (ortholog); INVOLVED IN actin filament organization (ortholog); activation of GTPase activity (ortholog); activation of Janus kinase activity (ortholog); PARTICIPATES IN endothelin signaling pathway; fibroblast growth factor signaling pathway; interleukin-2 signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); anti-basement membrane glomerulonephritis (ortholog); bone disease (ortholog); FOUND IN apical dendrite (ortholog); axon (ortholog); cell body (ortholog) NW_004955403 49856056 49970800 + 102003931 AGCD01002951;AGCD01002952;AGCD01002953;GBCE01000568;XM_005373738;XM_005373739;XM_005373740;XM_005373741;XM_013514189;XM_013514191 XP_005373795;XP_005373796;XP_005373797;XP_005373798;XP_013369643;XP_013369645 MODEL 10364386 ncrna LOC106146972 uncharacterized LOC106146972 NW_004955509 3770384 3772861 + 106146972 AGCD01066033;GBCQ01015745;XR_001231660 MODEL 8840774 protein-coding LOC102012500 uncharacterized LOC102012500 NW_004955456 6824286 6831920 + 102012500 AGCD01046378;GBDF01048469;XM_013520512;XR_001236319;XR_001236320 XP_013375966 MODEL 8796694 protein-coding LOC102009384 galectin-5-like NW_004955481 5414837 5422402 - 102009384 AGCD01056977;GBBH01036969;XM_013503347 XP_013358801 MODEL 8973043 protein-coding Topaz1 testis and ovary specific TOPAZ 1 INVOLVED IN apoptotic process (ortholog); ectopic germ cell programmed cell death (ortholog); lncRNA transcription (ortholog) NW_004955420 27048650 27106983 - 102011775 AGCD01021449;GBDF01250001;XM_013513516;XM_013513517;XM_013513518 XP_013368970;XP_013368971;XP_013368972 MODEL 39133604 snorna U3 Small nucleolar RNA U3 8708155 protein-coding Rragb Ras related GTP binding B ENCODES a protein that exhibits GTP binding (ortholog); GTPase binding (ortholog); guanyl ribonucleotide binding (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to amino acid stimulus (ortholog); cellular response to leucine starvation (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN cytoplasm (ortholog); lysosome (ortholog) NW_004955475 2662969 2692253 + 102026858 AGCD01054817;GBBH01019101;XM_005401539;XM_005401540;XM_013502883 XP_005401596;XP_005401597;XP_013358337 MODEL 9056547 protein-coding Smyd4 SET and MYND domain containing 4 INVOLVED IN heart development (ortholog); ASSOCIATED WITH medulloblastoma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955481 1361963 1412669 + 102014451 AGCD01056830;AGCD01056831;AGCD01056832;GBDF01254095;XM_005402603;XM_013503458 XP_005402660;XP_013358912 MODEL 8876513 protein-coding Them4 thioesterase superfamily member 4 ENCODES a protein that exhibits long-chain fatty acyl-CoA hydrolase activity (ortholog); INVOLVED IN fatty acid metabolic process (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); regulation of mitochondrial membrane permeability involved in apoptotic process (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); hepatocellular carcinoma (ortholog); immunodeficiency 42 (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955589 517489 545779 + 102011160 AGCD01076175;GBDF01122861;XM_005414537 XP_005414594 MODEL 9035215 protein-coding Ranbp2 RAN binding protein 2 ENCODES a protein that exhibits kinase activator activity (ortholog); peptidyl-prolyl cis-trans isomerase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN centrosome localization (ortholog); NLS-bearing protein import into nucleus (ortholog); nuclear export (ortholog); PARTICIPATES IN CRM1 export pathway; mitochondria transport pathway; ASSOCIATED WITH Alpers-Huttenlocher syndrome (ortholog); anodontia (ortholog); autism spectrum disorder (ortholog); FOUND IN annulate lamellae (ortholog); cytoplasmic periphery of the nuclear pore complex (ortholog); cytosol (ortholog) NW_004955470 12180426 12247737 + 102009934 AGCD01052922;AGCD01052923;AGCD01052924;AGCD01052925;GBDF01156107;XM_005400808;XM_005400809;XM_005400811 XP_005400865;XP_005400866;XP_005400868 MODEL 8863979 protein-coding LOC102011696 butyrophilin-like protein 8 NW_004955530 347486 352064 - 102011696 AGCD01069846;GBDF01142616;XM_013507548 XP_013363002 MODEL 8777895 protein-coding Pitx2 paired like homeodomain 2 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN anatomical structure morphogenesis (ortholog); animal organ morphogenesis (ortholog); atrial cardiac muscle tissue morphogenesis (ortholog); ASSOCIATED WITH anterior segment dysgenesis (ortholog); anterior segment dysgenesis 1 (ortholog); anterior segment dysgenesis 4 (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955457 15803493 15823193 + 102022050 AGCD01047099;GBCB01023937;XM_005397106;XM_005397107 XP_005397163;XP_005397164 MODEL 8941576 protein-coding Spryd3 SPRY domain containing 3 NW_004955458 347600 367264 - 102011179 AGCD01047120;AGCD01047121;AGCD01047122;GBDJ01025161;XM_005397141;XM_013520874 XP_005397198;XP_013376328 MODEL 10163407 pseudo LOC106146974 uncharacterized LOC106146974 NW_004955510 4020198 4022900 - 106146974 AGCD01066254 MODEL 39133514 snorna U3 Small nucleolar RNA U3 8800053 protein-coding Palm paralemmin ENCODES a protein that exhibits D3 dopamine receptor binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); cellular response to electrical stimulus (ortholog); cytoskeleton organization (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog); FOUND IN apicolateral plasma membrane (ortholog); axon (ortholog); basolateral plasma membrane (ortholog) NW_004955495 7044942 7060022 - 102020685 AGCD01062115;GBDF01188329;XM_005406025;XM_005406026;XM_013505345;XM_013505346;XM_013505347 XP_005406082;XP_005406083;XP_013360799;XP_013360800;XP_013360801 MODEL 8911051 trna trnC(gca) tRNA-Cys MT 5191 5257 - 15822223 8799882 protein-coding LOC102010896 protocadherin beta-4-like NW_004955415 12626696 12673195 - 102010896 AGCD01016208;AGCD01016209;AGCD01016210;AGCD01016211;AGCD01016212;AGCD01016213;AGCD01016214;AGCD01016215;AGCD01016216;AGCD01016217;AGCD01016218;GBDJ01233417;XM_013512127 XP_013367581 MODEL 8800749 protein-coding Braf B-Raf proto-oncogene, serine/threonine kinase ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); MAP kinase kinase activity (ortholog); INVOLVED IN alpha-beta T cell differentiation (ortholog); CD4-positive or CD8-positive, alpha-beta T cell lineage commitment (ortholog); CD4-positive, alpha-beta T cell differentiation (ortholog); PARTICIPATES IN adenosine signaling pathway; altered extracellular signal-regulated Raf/Mek/Erk signaling pathway; colorectal cancer pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); ameloblastoma (ortholog); Aortic Aneurysm, Giant Congenital (ortholog); FOUND IN cell body (ortholog); centriolar satellite (ortholog); ciliary basal body (ortholog) NW_004955494 2567238 2712708 + 102018105 AGCD01061441;AGCD01061442;AGCD01061443;AGCD01061444;AGCD01061445;AGCD01061446;AGCD01061447;AGCD01061448;GBDF01011297;GBDF01011303;XM_005405413;XM_005405415;XM_005405418;XM_005405419;XM_013504993;XM_013504994;XM_013504995;XM_013504996;XM_013504997;XR_001231320;XR_001231321 XP_005405470;XP_005405472;XP_005405475;XP_005405476;XP_013360447;XP_013360448;XP_013360449;XP_013360450;XP_013360451 MODEL 8968131 protein-coding LOC102008239 prolyl-tRNA synthetase associated domain-containing protein 1 NW_004955424 27774507 27776459 - 102008239 AGCD01025126;GBCQ01153725;XM_005385777 XP_005385834 MODEL 8924749 protein-coding LOC102024164 elongation factor 1-alpha 1-like NW_004955437 17981299 17983136 + 102024164 AGCD01034770;AGCD01034771;XM_013516741 XP_013372195 MODEL 150537115 snorna SNORD104 small nucleolar RNA, C/D box 104 8893441 protein-coding Slc37a1 solute carrier family 37 member 1 ENCODES a protein that exhibits glucose 6-phosphate:phosphate antiporter activity (ortholog); INVOLVED IN glucose-6-phosphate transport (ortholog); phosphate ion transmembrane transport (ortholog); ASSOCIATED WITH cataract 9 multiple types (ortholog); developmental and epileptic encephalopathy 30 (ortholog); homocystinuria (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955407 39203934 39268273 - 102010551 AGCD01007823;AGCD01007824;GBBH01090368;XM_005375814;XM_005375818;XM_005375819;XM_005375820;XM_005375822;XR_001231341;XR_001231343 XP_005375871;XP_005375875;XP_005375876;XP_005375877;XP_005375879 MODEL 8986311 protein-coding Rbmxl2 RBMX like 2 NW_004955414 22919632 22921150 + 102015005 AGCD01015485;AGCD01015486;GBDF01083890;XM_005380515 XP_005380572 MODEL 8761351 protein-coding Prkag2 protein kinase AMP-activated non-catalytic subunit gamma 2 ENCODES a protein that exhibits ADP binding (ortholog); AMP binding (ortholog); AMP-activated protein kinase activity (ortholog); INVOLVED IN glycogen metabolic process (ortholog); intracellular signal transduction (ortholog); regulation of catalytic activity (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; ASSOCIATED WITH arrhythmogenic right ventricular dysplasia 9 (ortholog); cardiomyopathy (ortholog); congestive heart failure (ortholog); FOUND IN nucleotide-activated protein kinase complex (ortholog) NW_004955491 5852534 6048820 - 102009726 AGCD01060506;AGCD01060507;AGCD01060508;AGCD01060509;AGCD01060510;AGCD01060511;AGCD01060512;AGCD01060513;GBDF01120908;XM_013504627 XP_013360081 MODEL 8771443 protein-coding Vxn vexin INVOLVED IN neurogenesis (ortholog); neuron differentiation (ortholog); FOUND IN nucleus (ortholog); plasma membrane (ortholog) NW_004955444 12659894 12684919 - 102016529 AGCD01039078;GBCQ01140368;XM_005392150;XM_005392151;XM_005392152 XP_005392207;XP_005392208;XP_005392209 MODEL 8745653 protein-coding Phgdh phosphoglycerate dehydrogenase ENCODES a protein that exhibits phosphoglycerate dehydrogenase activity (ortholog); INVOLVED IN G1 to G0 transition (ortholog); gamma-aminobutyric acid metabolic process (ortholog); glial cell development (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); Breast Neoplasms (ortholog); epilepsy (ortholog) NW_004955435 22757473 22803123 + 102018019 AGCD01033520;GBDK01323915;XM_005389088 XP_005389145 MODEL 8915618 protein-coding LOC102018897 uncharacterized LOC102018897 NW_004955458 9971865 9973728 + 102018897 AGCD01047669;GBDF01150755;XM_005397436 XP_005397493 MODEL 8713993 protein-coding LOC102009385 olfactory receptor 2T27-like NW_004955418 29991095 30001887 - 102009385 AGCD01019496;XM_005382363 XP_005382420 MODEL 8974532 protein-coding Plgrkt plasminogen receptor with a C-terminal lysine INVOLVED IN positive regulation of plasminogen activation (ortholog); ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); FOUND IN mitochondrion (ortholog); plasma membrane (ortholog) NW_004955434 9424793 9468055 - 102030660 AGCD01032301;AGCD01032302;AGCD01032303;GBDJ01355387;XM_005388659 XP_005388716 MODEL 8820253 protein-coding LOC102007886 putative olfactory receptor 52P1 NW_004955414 21670016 21670951 - 102007886 AGCD01015426;XM_005380499 XP_005380556 MODEL 9040942 ncrna LOC102006752 uncharacterized LOC102006752 NW_004955410 28863475 28865857 + 102006752 AGCD01011262;GBCB01001006;XR_259878 MODEL 9004551 protein-coding Lemd1 LEM domain containing 1 ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955406 41126284 41181007 - 102008696 AGCD01006672;AGCD01006673;GBDJ01221678;XM_005375357;XM_005375358;XM_013522920 XP_005375414;XP_005375415;XP_013378374 MODEL 8888498 protein-coding Elovl1 ELOVL fatty acid elongase 1 ENCODES a protein that exhibits fatty acid elongase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); establishment of skin barrier (ortholog); fatty acid elongation, monounsaturated fatty acid (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); ICHTHYOTIC KERATODERMA, SPASTICITY, HYPOMYELINATION, AND DYSMORPHIC FACIAL FEATURES (ortholog); optic atrophy (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955537 2945509 2950146 - 102026566 AGCD01070940;GBCE01055429;XM_005410653;XM_013507748 XP_005410710;XP_013363202 MODEL 8805272 pseudo LOC102018898 60S ribosomal protein L21 pseudogene NW_004955458 2628825 2629154 - 102018898 AGCD01047240;XM_005397497 MODEL 8782076 ncrna LOC102011289 uncharacterized LOC102011289 NW_004955411 10258447 10278073 - 102011289 AGCD01011777;GBDF01225406;XR_001232804 MODEL 10388026 protein-coding Prss57 serine protease 57 ENCODES a protein that exhibits heparin binding (ortholog); serine-type peptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); COVID-19 (ortholog); cyclic hematopoiesis (ortholog); FOUND IN azurophil granule lumen (ortholog); extracellular space (ortholog) NW_004955495 7067844 7077048 + 106146768 AGCD01062117;XM_013505061 XP_013360515 MODEL 8990146 protein-coding Slco1a2 solute carrier organic anion transporter family member 1A2 ENCODES a protein that exhibits bile acid transmembrane transporter activity (ortholog); organic anion transmembrane transporter activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN cellular response to xenobiotic stimulus (ortholog); response to estrogen (ortholog); sodium-independent organic anion transport (ortholog); ASSOCIATED WITH cholestasis (ortholog); Dubin-Johnson syndrome (ortholog); steatotic liver disease (ortholog); FOUND IN basal plasma membrane (ortholog); plasma membrane (ortholog) NW_004955413 16821808 16910511 + 102015094 AGCD01014115;AGCD01014116;AGCD01014117;GBDF01277792;XM_005379051;XM_005379052;XM_005379053 XP_005379108;XP_005379109;XP_005379110 MODEL 8814550 pseudo LOC102018525 transcription factor BTF3 pseudogene NW_004955435 12032177 12032814 - 102018525 AGCD01033133 MODEL 8844817 protein-coding Trim24 tripartite motif containing 24 ENCODES a protein that exhibits chromatin binding (ortholog); estrogen response element binding (ortholog); lysine-acetylated histone binding (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); cellular response to estrogen stimulus (ortholog); epithelial cell proliferation (ortholog); PARTICIPATES IN histone modification pathway; retinoic acid signaling pathway; ASSOCIATED WITH castration-resistant prostate carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); euchromatin (ortholog); male germ cell nucleus (ortholog) NW_004955494 4308924 4421588 - 102009957 AGCD01061494;AGCD01061495;AGCD01061496;AGCD01061497;AGCD01061498;GBBH01187802;GBDI01127792;XM_013504966 XP_013360420 MODEL 8881027 protein-coding LOC102010898 creatine kinase U-type, mitochondrial NW_004955416 10117075 10122968 + 102010898 AGCD01017108;AGCD01017109;GBDJ01024945;XM_013512557;XM_013512558 XP_013368011;XP_013368012 MODEL 8750168 protein-coding Rab11fip2 RAB11 family interacting protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); protein kinase binding (ortholog); INVOLVED IN establishment of cell polarity (ortholog); insulin secretion involved in cellular response to glucose stimulus (ortholog); phagocytosis (ortholog); PARTICIPATES IN vasopressin signaling pathway; vasopressin signaling pathway via receptor type 2; FOUND IN endosome (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955431 22637605 22674107 - 102030657 AGCD01030516;GBBH01043971;GBCB01073562;XM_005387876 XP_005387933 MODEL 9042343 pseudo LOC102003606 probable ATP-dependent RNA helicase DDX6 pseudogene NW_004955607 367321 368195 + 102003606 AGCD01076984 MODEL 8803754 protein-coding LOC102021482 sperm acrosome membrane-associated protein 4-like NW_004955437 249864 253964 - 102021482 AGCD01034115;GBCE01030987;XM_013516852;XM_013516853;XR_001235059;XR_001235060 XP_013372306;XP_013372307 MODEL 8862284 protein-coding LOC102010492 zinc finger protein 660 NW_004955420 26897949 26926759 - 102010492 AGCD01021435;GBDF01039917;XM_005383479;XM_013513416;XM_013513417;XM_013513418;XM_013513419;XM_013513420;XM_013513421;XM_013513422;XM_013513423 XP_005383536;XP_013368870;XP_013368871;XP_013368872;XP_013368873;XP_013368874;XP_013368875;XP_013368876;XP_013368877 MODEL 8786281 protein-coding Them5 thioesterase superfamily member 5 ENCODES a protein that exhibits long-chain fatty acyl-CoA hydrolase activity (ortholog); INVOLVED IN long-chain fatty-acyl-CoA metabolic process (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955589 546592 571844 + 102011490 AGCD01076175;AGCD01076176;GBDJ01020946;XM_005414538;XM_005414543;XM_005414545;XM_013509937;XM_013509938 XP_005414595;XP_005414600;XP_005414602;XP_013365391;XP_013365392 MODEL 8952179 pseudo LOC102010899 dnaJ homolog subfamily B member 6-like NW_004955477 2188830 2190566 + 102010899 AGCD01055518;XR_263678 MODEL 8756810 protein-coding Spryd4 SPRY domain containing 4 ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); INTERSTITIAL LUNG AND LIVER DISEASE (ortholog); FOUND IN mitochondrion (ortholog); nucleus (ortholog) NW_004955458 4051978 4053734 + 102010033 AGCD01047364;GBDI01357431;XM_005397315 XP_005397372 MODEL 9054681 protein-coding Snrnp48 small nuclear ribonucleoprotein U11/U12 subunit 48 ASSOCIATED WITH arrhythmogenic right ventricular dysplasia 8 (ortholog); Carvajal syndrome (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); U12-type spliceosomal complex (ortholog) NW_004955465 6339362 6353563 - 102027391 AGCD01050441;GBDJ01316518;XM_005398851 XP_005398908 MODEL 9053426 ncrna LOC102009386 uncharacterized LOC102009386 NW_004955483 2296014 2317875 + 102009386 AGCD01057673;GBDF01118867;XR_001231019 MODEL 8858899 protein-coding LOC102023181 uncharacterized LOC102023181 NW_004955513 2511446 2531580 + 102023181 AGCD01066880;GBBH01164409;XM_013506574 XP_013362028 MODEL 8923561 protein-coding Slc24a3 solute carrier family 24 member 3 ENCODES a protein that exhibits calcium, potassium:sodium antiporter activity (ortholog); INVOLVED IN bone mineralization (ortholog); calcium ion transmembrane transport (ortholog); intracellular calcium ion homeostasis (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); familial hyperinsulinemic hypoglycemia 1 (ortholog); Salivary Gland Neoplasms (ortholog); FOUND IN cell periphery (ortholog); plasma membrane (ortholog) NW_004955415 27477801 27930108 + 102019800 AGCD01016632;AGCD01016633;AGCD01016634;AGCD01016635;AGCD01016636;GBCE01151533;GBDK01146008;XM_005380939 XP_005380996 MODEL 8754373 protein-coding Nat8l N-acetyltransferase 8 like ENCODES a protein that exhibits L-aspartate N-acetyltransferase activity (ortholog); INVOLVED IN acetate metabolic process (ortholog); aspartate metabolic process (ortholog); positive regulation of dopamine uptake involved in synaptic transmission (ortholog); ASSOCIATED WITH cherubism (ortholog); microcephaly (ortholog); N-Acetylaspartate Deficiency (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955514 1207310 1213732 + 102021269 AGCD01067041;GBCE01176411;GBCQ01097994;XM_013506831 XP_013362285 MODEL 8767676 ncrna LOC102008245 uncharacterized LOC102008245 NW_004955429 19596397 19597902 - 102008245 AGCD01028966;GBCB01088322;XR_261365 MODEL 8951581 protein-coding LOC102017380 L-amino-acid oxidase-like NW_004955537 2570651 2577698 - 102017380 AGCD01070931;GBDF01175151;XM_005410719 XP_005410776 MODEL 39133406 snorna SNORD105 small nucleolar RNA, C/D box 105 8868953 protein-coding Osbpl5 oxysterol binding protein like 5 ENCODES a protein that exhibits cholesterol binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); phosphatidylserine binding (ortholog); INVOLVED IN phospholipid transport (ortholog); ASSOCIATED WITH delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN endoplasmic reticulum-plasma membrane contact site (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955422 14871578 14928935 - 102015210 AGCD01022872;AGCD01022873;GBCB01007778;XM_005384223;XM_013514289 XP_005384280;XP_013369743 MODEL 8891422 ncrna LOC102011290 uncharacterized LOC102011290 NW_004955464 5744512 5747225 + 102011290 AGCD01050012;AGCD01050013;GBDF01041677;XR_263200 MODEL 8875785 protein-coding Slc37a2 solute carrier family 37 member 2 ENCODES a protein that exhibits glucose 6-phosphate:phosphate antiporter activity (ortholog); INVOLVED IN glucose-6-phosphate transport (ortholog); phosphate ion transmembrane transport (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955412 26119121 26143728 + 102018483 AGCD01013185;GBCE01075926;XM_005378455;XM_013511237;XM_013511238 XP_005378512;XP_013366691;XP_013366692 MODEL 8750762 protein-coding Rbp1 retinol binding protein 1 ENCODES a protein that exhibits all-trans-retinol binding (ortholog); retinol binding (ortholog); INVOLVED IN lipid homeostasis (ortholog); lipid storage (ortholog); regulation of granulocyte differentiation (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); basal cell carcinoma (ortholog); carcinoma (ortholog); FOUND IN cell body (ortholog); cytosol (ortholog); lipid droplet (ortholog) NW_004955508 6046738 6072202 + 102024936 AGCD01065912;GBDJ01081692;XM_005407782;XM_013506285 XP_005407839;XP_013361739 MODEL 10347018 protein-coding Phgr1 proline, histidine and glycine rich 1 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog) NW_004955416 7277637 7280676 + 106148164 AGCD01016971;GBCQ01018450;XM_013512620 XP_013368074 MODEL 8756906 pseudo LOC102015465 E3 ubiquitin-protein ligase RLIM pseudogene NW_004955443 15375124 15377155 - 102015465 AGCD01038538;XM_005392026 MODEL 8740038 protein-coding Wac WW domain containing adaptor with coiled-coil ENCODES a protein that exhibits chromatin binding (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); DNA damage response (ortholog); mitotic G1 DNA damage checkpoint signaling (ortholog); ASSOCIATED WITH DeSanto-Shinawi syndrome (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleoplasm (ortholog); spliceosomal complex (ortholog) NW_004955462 2358842 2435644 + 102015612 AGCD01049165;AGCD01049166;GBBH01064776;XM_005398110;XM_013521376;XM_013521377;XM_013521378;XM_013521379;XM_013521380 XP_005398167;XP_013376830;XP_013376831;XP_013376832;XP_013376833;XP_013376834 MODEL 39131486 protein-coding PALM2AKAP2 PALM2 and AKAP2 fusion 8910985 protein-coding Plin1 perilipin 1 INVOLVED IN cellular response to cold (ortholog); lipid catabolic process (ortholog); negative regulation of lipid catabolic process (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); D-2-hydroxyglutaric aciduria 2 (ortholog); FOUND IN cell periphery (ortholog); cytosol (ortholog); lipid droplet (ortholog) NW_004955416 15538309 15549275 + 102026001 AGCD01017335;GBDI01016533;XM_013512551;XM_013512552 XP_013368005;XP_013368006 MODEL 10326173 ncrna LOC106149802 uncharacterized LOC106149802 NW_004955406 4543593 4549484 + 106149802 AGCD01005690;GBCE01067771;XR_001236214 MODEL 8828127 ncrna LOC102010901 uncharacterized LOC102010901 NW_004955416 18447091 18476171 + 102010901 AGCD01017406;GBDF01227734;XR_260392 MODEL 8762681 protein-coding LOC102005330 uncharacterized LOC102005330 NW_004955637 38088 43799 + 102005330 AGCD01077644;AGCD01077645;XM_005415045 XP_005415102 MODEL 8997933 protein-coding LOC102007889 isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like NW_004955476 1983725 1985174 + 102007889 AGCD01055217;GBDF01044591;XM_005401726 XP_005401783 MODEL 8976324 pseudo LOC102018899 39S ribosomal protein L47, mitochondrial-like NW_004955409 7916768 7917852 - 102018899 AGCD01009369 MODEL 8760621 protein-coding Elovl2 ELOVL fatty acid elongase 2 ENCODES a protein that exhibits acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); fatty acid elongase activity (ortholog); INVOLVED IN alpha-linolenic acid metabolic process (ortholog); fatty acid biosynthetic process (ortholog); fatty acid derivative biosynthetic process (ortholog); ASSOCIATED WITH male infertility (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955465 3413923 3433558 + 102019043 AGCD01050378;GBDJ01127241;XM_005398829 XP_005398886 MODEL 8981400 protein-coding Brap BRCA1 associated protein ENCODES a protein that exhibits identical protein binding (ortholog); nuclear localization sequence binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN MAPK cascade (ortholog); negative regulation of signal transduction (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH myocardial infarction (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear membrane (ortholog) NW_004955482 8254709 8282416 - 102029515 AGCD01057515;GBDF01246857;XM_005403172 XP_005403229 MODEL 8884318 ncrna LOC102024169 uncharacterized LOC102024169 NW_004955443 19903033 19910517 + 102024169 AGCD01038639;GBBH01044033;XR_001235444;XR_001235445;XR_001235446 MODEL 8811103 ncrna LOC102006378 uncharacterized LOC102006378 NW_004955431 11018368 11079905 + 102006378 AGCD01030216;AGCD01030217;AGCD01030218;AGCD01030219;AGCD01030220;AGCD01030221;AGCD01030222;AGCD01030223;GBDF01303264;XR_001234572;XR_261463 MODEL 8882409 protein-coding Spryd7 SPRY domain containing 7 ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog) NW_004955431 3303091 3330360 - 102028321 AGCD01029962;GBCB01002524;XM_005387601;XM_013515781 XP_005387658;XP_013371235 MODEL 8709854 protein-coding Ptk6 protein tyrosine kinase 6 ENCODES a protein that exhibits identical protein binding (ortholog); non-membrane spanning protein tyrosine kinase activity (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN cell migration (ortholog); cellular response to retinoic acid (ortholog); intestinal epithelial cell differentiation (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); autosomal recessive dyskeratosis congenita 5 (ortholog); benign familial infantile seizures 6 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955528 687996 695596 + 102009754 AGCD01069542;GBCQ01083858;XM_005409962 XP_005410019 MODEL 9036435 protein-coding Topbp1 DNA topoisomerase II binding protein 1 ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); identical protein binding (ortholog); phosphorylation-dependent protein binding (ortholog); INVOLVED IN broken chromosome clustering (ortholog); chromosome organization (ortholog); DNA damage checkpoint signaling (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN actin cytoskeleton (ortholog); BRCA1-B complex (ortholog); chromosome (ortholog) NW_004955501 4907687 4974995 + 102028214 AGCD01064148;GBDF01083772;XM_005406814;XM_005406815;XM_013505749;XM_013505750;XM_013505751;XM_013505753;XR_264253 XP_005406871;XP_005406872;XP_013361203;XP_013361204;XP_013361205;XP_013361207 MODEL 39132281 snorna SNORD105B small nucleolar RNA, C/D box 105B 8914273 ncrna LOC102017386 uncharacterized LOC102017386 NW_004955439 13038292 13094346 + 102017386 AGCD01035955;AGCD01035956;GBDF01279672;XR_001235175;XR_001235176;XR_261987;XR_261988 MODEL 8881247 protein-coding LOC102010146 uncharacterized LOC102010146 NW_004955471 567077 785143 + 102010146 AGCD01052962;AGCD01052963;AGCD01052964;AGCD01052965;XM_013522863 XP_013378317 MODEL 10220336 pseudo LOC106146975 dolichol-phosphate mannosyltransferase subunit 3-like NW_004955510 5980357 5980701 - 106146975 AGCD01066298 MODEL 9037806 protein-coding Rragc Ras related GTP binding C ENCODES a protein that exhibits enzyme-substrate adaptor activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to nutrient levels (ortholog); positive regulation of TORC1 signaling (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); follicular lymphoma (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); FNIP-folliculin RagC/D GAP (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955452 16469426 16486336 - 102019769 AGCD01044512;AGCD01044513;GBDI01180443;XM_005395231 XP_005395288 MODEL 8778490 protein-coding Pitx3 paired like homeodomain 3 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to glial cell derived neurotrophic factor (ortholog); dopaminergic neuron differentiation (ortholog); lens development in camera-type eye (ortholog); ASSOCIATED WITH anterior segment dysgenesis (ortholog); anterior segment dysgenesis 1 (ortholog); Aphakia (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955485 8130244 8140292 + 102016057 AGCD01058690;AGCD01058691;GBCB01061028;GBDF01098688;XM_013504101 XP_013359555 MODEL 39133516 snorna U3 Small nucleolar RNA U3 8841742 protein-coding Rgs14 regulator of G protein signaling 14 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GDP-dissociation inhibitor activity (ortholog); GTPase activating protein binding (ortholog); INVOLVED IN cell division (ortholog); chromosome segregation (ortholog); learning (ortholog); ASSOCIATED WITH Chromosome 5, Trisomy 5q (ortholog); Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955408 29602654 29616793 + 102024093 AGCD01008765;GBDI01222250;XM_005376427 XP_005376484 MODEL 8733591 pseudo LOC102010496 normal mucosa of esophagus-specific gene 1 protein pseudogene NW_004955421 23376672 23380513 - 102010496 AGCD01022183 MODEL 9032619 protein-coding LOC102021483 HLA class II histocompatibility antigen, DQ beta 1 chain-like NW_004955437 1393285 1399648 - 102021483 AGCD01034205;GBBH01003753;XM_005389455 XP_005389512 MODEL 8920904 protein-coding Pclo piccolo presynaptic cytomatrix protein ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); profilin binding (ortholog); INVOLVED IN cytoskeleton organization (ortholog); insulin secretion (ortholog); modulation of excitatory postsynaptic potential (ortholog); ASSOCIATED WITH CHARGE syndrome (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN axon (ortholog); cone cell pedicle (ortholog); cytoskeleton of presynaptic active zone (ortholog) NW_004955410 2998345 3334056 + 102013914 AGCD01010638;AGCD01010639;AGCD01010640;AGCD01010641;AGCD01010642;AGCD01010643;AGCD01010644;AGCD01010645;AGCD01010646;GBDF01252702;GBDF01252704;XM_013510507 XP_013365961 MODEL 8984553 protein-coding LOC102009387 bile acid-CoA:amino acid N-acyltransferase-like NW_004955419 24443222 24466306 + 102009387 AGCD01020347;GBDJ01035584;XM_005382801;XM_013513082 XP_005382858;XP_013368536 MODEL 8911469 protein-coding Plin2 perilipin 2 INVOLVED IN cellular response to glucose starvation (ortholog); lipid droplet disassembly (ortholog); lipid storage (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Hypertriglyceridemia (ortholog); Insulin Resistance (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lipid droplet (ortholog) NW_004955434 21573860 21580990 - 102018432 AGCD01032639;GBCB01119738;GBDJ01082348;XM_013516386 XP_013371840 MODEL 8821874 protein-coding Prss58 serine protease 58 ASSOCIATED WITH Hereditary Pancreatitis (ortholog) NW_004955494 1277333 1283610 + 102011880 AGCD01061393;GBDF01008495;XM_005405396 XP_005405453 MODEL 8710039 protein-coding Smyd5 SMYD family member 5 ENCODES a protein that exhibits histone H3K36 trimethyltransferase activity (ortholog); histone H4K20 methyltransferase activity (ortholog); protein-lysine N-methyltransferase activity (ortholog); INVOLVED IN negative regulation of gene expression, epigenetic (ortholog); positive regulation of cytoplasmic translational elongation (ortholog); regulation of stem cell differentiation (ortholog); ASSOCIATED WITH Alstrom syndrome (ortholog); congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); FOUND IN cytoplasm (ortholog) NW_004955424 12408059 12422424 - 102018619 AGCD01024604;GBCQ01129452;XM_005385571;XM_013514725;XM_013514726 XP_005385628;XP_013370179;XP_013370180 MODEL 8838023 protein-coding Sema6b semaphorin 6B ENCODES a protein that exhibits semaphorin receptor binding (ortholog); INVOLVED IN axon guidance (ortholog); central nervous system development (ortholog); hippocampus development (ortholog); ASSOCIATED WITH amenorrhea (ortholog); cerebellar hypoplasia (ortholog); COVID-19 (ortholog) NW_004955495 4387147 4399430 + 102008329 AGCD01061920;AGCD01061921;GBCE01168220;GBDF01281169;XM_013505185 XP_013360639 MODEL 8788376 pseudo LOC102008246 olfactory receptor 5A1-like NW_004955511 3810447 3812052 - 102008246 AGCD01066476 MODEL 8900039 pseudo LOC102011704 CCA tRNA nucleotidyltransferase 1, mitochondrial-like NW_004955444 8744286 8760868 + 102011704 AGCD01038945 MODEL 9004737 protein-coding Slco1c1 solute carrier organic anion transporter family member 1C1 ENCODES a protein that exhibits bile acid transmembrane transporter activity (ortholog); organic anion transmembrane transporter activity (ortholog); thyroid hormone transmembrane transporter activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); positive regulation of thyroid hormone generation (ortholog); thyroid hormone transport (ortholog); PARTICIPATES IN multispecific organic anion transporter mediated transport pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); primary biliary cholangitis (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955413 16654655 16705638 + 102013812 AGCD01014108;AGCD01014109;XM_005379046;XM_005379049 XP_005379103;XP_005379106 MODEL 8709553 ncrna LOC102024170 uncharacterized LOC102024170 NW_004955445 701392 713169 + 102024170 AGCD01039323;GBDK01292464;XR_001235572;XR_001235573;XR_262289 MODEL 8991492 pseudo LOC102006382 non-histone chromosomal protein HMG-14 pseudogene NW_004955515 1139391 1139869 - 102006382 AGCD01067220 MODEL 8774859 protein-coding Rab11fip3 RAB11 family interacting protein 3 ENCODES a protein that exhibits dynein light intermediate chain binding (ortholog); identical protein binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN early endosome to recycling endosome transport (ortholog); endocytic recycling (ortholog); Golgi to plasma membrane protein transport (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955442 16678136 16760663 - 102027239 AGCD01037905;AGCD01037906;AGCD01037907;AGCD01037908;AGCD01037909;GBBH01228926;GBDJ01230394;XM_013517818;XM_013517819 XP_013373272;XP_013373273 MODEL 8722402 protein-coding Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 ENCODES a protein that exhibits AMP-activated protein kinase activity (ortholog); protein kinase binding (ortholog); protein kinase regulator activity (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); negative regulation of glycogen biosynthetic process (ortholog); regulation of glycolytic process (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); carbohydrate metabolic disorder (ortholog); cerebrotendinous xanthomatosis (ortholog); FOUND IN nucleotide-activated protein kinase complex (ortholog) NW_004955453 14584405 14594112 + 102003940 AGCD01044871;GBDF01176866;XM_005395623;XM_005395624;XM_005395625;XM_005395626;XM_013519792;XM_013519793;XM_013519794;XM_013519795 XP_005395680;XP_005395681;XP_005395682;XP_005395683;XP_013375246;XP_013375247;XP_013375248;XP_013375249 MODEL 8708921 protein-coding Polq DNA polymerase theta ENCODES a protein that exhibits 5'-deoxyribose-5-phosphate lyase activity (ortholog); chromatin binding (ortholog); DNA helicase activity (ortholog); INVOLVED IN base-excision repair (ortholog); DNA damage response (ortholog); DNA repair (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); COVID-19 (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); mitochondrial nucleoid (ortholog) NW_004955427 20779332 20895094 - 102029881 AGCD01027416;AGCD01027417;AGCD01027418;AGCD01027419;AGCD01027420;AGCD01027421;AGCD01027422;AGCD01027423;GBDJ01300677;XM_005386484;XM_013515227;XM_013515228 XP_005386541;XP_013370681;XP_013370682 MODEL 9052565 ncrna LOC102006753 uncharacterized LOC102006753 NW_004955463 9484775 9495936 + 102006753 AGCD01049784;AGCD01049785;XR_263163 MODEL 8904057 protein-coding Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase ENCODES a protein that exhibits antigen binding (ortholog); DNA binding (ortholog); DNA topoisomerase binding (ortholog); INVOLVED IN DNA damage response (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); COVID-19 (ortholog); distal arthrogryposis type 1A (ortholog); FOUND IN centriole (ortholog); ciliary basal body (ortholog); gamma-tubulin complex (ortholog) NW_004955472 3073090 3076607 + 102015004 AGCD01053501;GBBH01173020;GBDF01118627;XM_013522944 XP_013378398 MODEL 8917601 protein-coding Them6 thioesterase superfamily member 6 ASSOCIATED WITH Recombinant Chromosome 8 Syndrome (ortholog) NW_004955454 1433644 1438156 + 102020081 AGCD01044969;GBCB01002054;XM_005395736 XP_005395793 MODEL 8892160 protein-coding LOC102010149 olfactory receptor 52K2-like NW_004955414 21881188 21882150 - 102010149 AGCD01015436;XM_013511736 XP_013367190 MODEL 9000894 protein-coding Lemd2 LEM domain nuclear envelope protein 2 INVOLVED IN heart formation (ortholog); negative regulation of MAPK cascade (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); cataract (ortholog); cataract 46 juvenile-onset (ortholog); FOUND IN chromatin (ortholog); endoplasmic reticulum (ortholog); nuclear envelope (ortholog) NW_004955437 2163977 2178783 - 102011244 AGCD01034260;AGCD01034261;GBBH01091464;GBCE01152671;XM_013516995 XP_013372449 MODEL 9004115 protein-coding LOC102023188 vomeronasal type-2 receptor 116-like NW_004955524 386953 419114 - 102023188 AGCD01068676;AGCD01068677;GBBH01069707;XM_013507330 XP_013362784 MODEL 9043280 ncrna LOC102018526 uncharacterized LOC102018526 NW_004955527 465817 467792 + 102018526 AGCD01069385;GBDF01190302;XR_264664 MODEL 9027258 pseudo LOC102010903 60S ribosomal protein L18a pseudogene NW_004955481 3813679 3814552 + 102010903 AGCD01056916 MODEL 8883745 ncrna LOC102007891 uncharacterized LOC102007891 NW_004955417 4393900 4397203 + 102007891 AGCD01017946;GBDF01263566;XR_260459 MODEL 8978403 protein-coding LOC102010497 chromosome unknown open reading frame, human C16orf54 ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog) NW_004955493 7204452 7207168 + 102010497 AGCD01061164;GBCQ01165127;XM_005405245;XM_005405246;XR_264093 XP_005405302;XP_005405303 MODEL 9018351 protein-coding Slc24a4 solute carrier family 24 member 4 ENCODES a protein that exhibits calcium, potassium:sodium antiporter activity (ortholog); calcium-dependent protein binding (ortholog); calmodulin binding (ortholog); INVOLVED IN amelogenesis (ortholog); calcium ion export across plasma membrane (ortholog); calcium ion homeostasis (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH achondrogenesis type IA (ortholog); amelogenesis imperfecta (ortholog); amelogenesis imperfecta hypomaturation type 2A5 (ortholog); FOUND IN apical plasma membrane (ortholog); cone photoreceptor outer segment (ortholog); cytoplasm (ortholog) NW_004955438 14609779 14765516 + 102026477 AGCD01035347;AGCD01035348;AGCD01035349;AGCD01035350;GBDI01034773;XM_005390329;XM_013517214 XP_005390386;XP_013372668 MODEL 8741746 protein-coding Ranbp3 RAN binding protein 3 ENCODES a protein that exhibits R-SMAD binding (ortholog); small GTPase binding (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955495 3495179 3549528 + 102020134 AGCD01061861;AGCD01061862;GBDF01011028;XM_005405743;XM_005405744;XM_005405745;XM_005405746;XM_005405747;XM_005405748;XM_005405749;XM_013505313 XP_005405800;XP_005405801;XP_005405802;XP_005405803;XP_005405804;XP_005405805;XP_005405806;XP_013360767 MODEL 8888669 trna trnD(gtc) tRNA-Asp MT 6950 7017 + 15822226 10200077 protein-coding Prss8 serine protease 8 ENCODES a protein that exhibits sodium channel regulator activity (ortholog); INVOLVED IN hair follicle development (ortholog); positive regulation of sodium ion transmembrane transport (ortholog); positive regulation of sodium ion transport (ortholog); ASSOCIATED WITH alopecia (ortholog); autosomal recessive congenital ichthyosis 4B (ortholog); branched-chain keto acid dehydrogenase kinase deficiency (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular space (ortholog); membrane raft (ortholog) NW_004955493 7970929 7976885 - 106146726 AGCD01061245;GBCE01136676;XM_013504883 XP_013360337 MODEL 9004211 protein-coding Pdzrn3 PDZ domain containing ring finger 3 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN neuromuscular junction development (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH Childhood Schizophrenia (ortholog); Dwarfism (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN neuromuscular junction (ortholog) NW_004955421 14648436 14878759 + 102026121 AGCD01021959;AGCD01021960;AGCD01021961;GBBH01126566;GBCE01169321;XM_013513763 XP_013369217 MODEL 9057001 protein-coding LOC102011291 cytochrome P450 4A11-like NW_004955464 11487951 11500616 - 102011291 AGCD01050155;GBBH01214209;XM_005398645;XM_005398647 XP_005398702;XP_005398704 MODEL 8839076 ncrna LOC102017389 uncharacterized LOC102017389 NW_004955440 10499029 10501698 + 102017389 AGCD01036392;GBDF01235637;XR_262015 MODEL 8704139 protein-coding LOC102024173 testis-specific serine/threonine-protein kinase 1-like NW_004955446 5256392 5257796 - 102024173 AGCD01040061;GBDK01384059;XM_005392640 XP_005392697 MODEL 8889416 protein-coding Rbp2 retinol binding protein 2 ENCODES a protein that exhibits binding (ortholog); lipid binding (ortholog); molecular carrier activity (ortholog); INVOLVED IN retinoid metabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; FOUND IN cytosol (ortholog) NW_004955508 6111558 6135929 + 102025271 AGCD01065913;GBCQ01107672;XM_005407783 XP_005407840 MODEL 8914578 protein-coding Phip pleckstrin homology domain interacting protein ENCODES a protein that exhibits lysine-acetylated histone binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cytoskeleton organization (ortholog); fibroblast proliferation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); DEVELOPMENTAL DELAY, INTELLECTUAL DISABILITY, OBESITY, AND DYSMORPHIC FEATURES (ortholog); Developmental Disease (ortholog); FOUND IN nucleus (ortholog) NW_004955502 6842149 6951791 - 102005615 AGCD01064422;AGCD01064423;AGCD01064424;AGCD01064425;AGCD01064426;GBDK01145970;XM_013505816 XP_013361270 MODEL 8986967 ncrna LOC102012502 uncharacterized LOC102012502 NW_004955456 10052149 10054952 + 102012502 AGCD01046517;GBDF01261841;XR_262892 MODEL 9030768 protein-coding Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 ENCODES a protein that exhibits RNA binding (ortholog); U1 snRNA binding (ortholog); U1 snRNP binding (ortholog); INVOLVED IN cellular response to retinoic acid (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); cellular response to tumor necrosis factor (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); developmental and epileptic encephalopathy 12 (ortholog); Developmental Disabilities (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955559 1618246 1634144 - 102024057 AGCD01073654;GBDF01045469;XM_005412908;XM_005412911 XP_005412965;XP_005412968 MODEL 8738998 protein-coding Palm3 paralemmin 3 INVOLVED IN negative regulation of cytokine-mediated signaling pathway (ortholog); response to lipopolysaccharide (ortholog); Toll signaling pathway (ortholog) NW_004955415 32762631 32772809 - 102016155 AGCD01016732;GBDJ01276901;XM_005381146 XP_005381203 MODEL 8739352 protein-coding Wapl WAPL cohesin release factor ENCODES a protein that exhibits ATP-dependent protein-DNA unloader activity (ortholog); INVOLVED IN mitotic sister chromatid segregation (ortholog); negative regulation of DNA replication (ortholog); negative regulation of sister chromatid cohesion (ortholog); ASSOCIATED WITH clubfoot (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955510 5596622 5674221 - 102007681 AGCD01066283;AGCD01066284;AGCD01066285;GBDI01171890;XM_005407895;XM_013506324 XP_005407952;XP_013361778 MODEL 8988144 ncrna LOC102005333 uncharacterized LOC102005333 NW_004955452 11263904 11270100 + 102005333 AGCD01044333;GBDJ01321809;XR_001236063;XR_262678 MODEL 8718667 protein-coding Lenep lens epithelial protein ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog) NW_004955545 1495877 1497014 + 102017062 AGCD01071857;GBDF01240724;XM_005411536 XP_005411593 MODEL 8945846 protein-coding Elovl3 ELOVL fatty acid elongase 3 ENCODES a protein that exhibits fatty acid elongase activity (ortholog); INVOLVED IN fatty acid elongation, monounsaturated fatty acid (ortholog); fatty acid elongation, polyunsaturated fatty acid (ortholog); fatty acid elongation, saturated fatty acid (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955485 8141818 8144458 - 102020124 AGCD01058692;XM_005403852;XM_013504025 XP_005403909;XP_013359479 MODEL 8791738 pseudo LOC102008247 anaphase-promoting complex subunit 7 pseudogene NW_004955430 15868219 15872040 - 102008247 AGCD01029620 MODEL 8855937 protein-coding Snrpa small nuclear ribonucleoprotein polypeptide A ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); RNA binding (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); FOUND IN nucleoplasm (ortholog); spliceosomal complex (ortholog); U1 snRNP (ortholog) NW_004955578 579087 590010 - 102006181 AGCD01075489;GBCQ01041725;XM_005414022;XM_005414023 XP_005414079;XP_005414080 MODEL 9031176 protein-coding LOC102010909 zinc finger protein 621 NW_004955420 29420972 29427337 - 102010909 AGCD01021500;GBDF01074480;XM_005383573;XM_005383574;XM_013513402;XM_013513403;XM_013513404;XM_013513405;XM_013513406;XM_013513407 XP_005383630;XP_005383631;XP_013368856;XP_013368857;XP_013368858;XP_013368859;XP_013368860;XP_013368861 MODEL 8823047 protein-coding Osbpl6 oxysterol binding protein like 6 INVOLVED IN regulation of cholesterol transport (ortholog); FOUND IN cytosol (ortholog); early endosome membrane (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955403 18441548 18575838 - 102028601 AGCD01002100;AGCD01002101;AGCD01002102;GBDK01196921;XM_005373381;XM_005373382;XM_005373383;XM_005373385;XM_005373387;XM_005373388;XM_005373390;XM_013512645;XM_013512652;XM_013512653;XM_013512659;XM_013512663;XM_013512678 XP_005373438;XP_005373439;XP_005373440;XP_005373442;XP_005373444;XP_005373445;XP_005373447;XP_013368099;XP_013368106;XP_013368107;XP_013368113;XP_013368117;XP_013368132 MODEL 8970787 protein-coding LOC102010503 lariat debranching enzyme-like NW_004955501 822211 823819 + 102010503 AGCD01064040;GBDF01305393;XM_005406749 XP_005406806 MODEL 8757412 ncrna LOC102011707 uncharacterized LOC102011707 NW_004955446 1115766 1138545 - 102011707 AGCD01039953;GBDF01181940;XR_262364 MODEL 39133519 snorna U3 Small nucleolar RNA U3 8942296 protein-coding Ranbp3l RAN binding protein 3 like ENCODES a protein that exhibits SMAD binding (ortholog); INVOLVED IN mesenchymal cell differentiation involved in bone development (ortholog); negative regulation of osteoblast differentiation (ortholog); positive regulation of myoblast differentiation (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955426 21054463 21106290 - 102011888 AGCD01026578;AGCD01026579;AGCD01026580;GBCQ01004472;XM_013515011;XM_013515013;XM_013515014;XM_013515015 XP_013370465;XP_013370467;XP_013370468;XP_013370469 MODEL 8796282 pseudo LOC102015470 60S ribosomal protein L7-like NW_004955450 16063028 16064451 + 102015470 AGCD01042829 MODEL 8970740 protein-coding LOC102008248 retinal dehydrogenase 1 NW_004955512 5877696 5918693 + 102008248 AGCD01066780;GBCQ01010586;GBDI01006910;XM_013506548 XP_013362002 MODEL 8883673 protein-coding Rragd Ras related GTP binding D ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN cellular response to L-leucine (ortholog); cellular response to leucine starvation (ortholog); positive regulation of TORC1 signaling (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH genetic disease (ortholog); renal hypomagnesemia 7, with or without dilated cardiomyopathy (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955411 16111931 16155662 - 102006554 AGCD01011966;AGCD01011967;GBDJ01225532;XM_013510716 XP_013366170 MODEL 9032574 pseudo LOC102018901 mastermind-like protein 1 pseudogene NW_004955409 22975604 22978035 + 102018901 AGCD01010050 MODEL 8760129 ncrna LOC102024176 uncharacterized LOC102024176 NW_004955448 1571760 1595646 + 102024176 AGCD01041261;AGCD01041262;GBDF01273897;XR_262454 MODEL 10347569 pseudo LOC106149803 elongation factor 1-alpha 1 pseudogene NW_004955454 8197931 8198629 + 106149803 AGCD01045320 MODEL 8701590 protein-coding LOC102006758 olfactory receptor 147-like NW_004955412 25230240 25240655 + 102006758 AGCD01013141;XM_005378417;XM_013510987 XP_005378474;XP_013366441 MODEL 39131336 protein-coding TOPORS TOP1 binding arginine/serine rich protein 8804927 protein-coding Themis thymocyte selection associated INVOLVED IN negative T cell selection (ortholog); positive T cell selection (ortholog); T cell receptor signaling pathway (ortholog); ASSOCIATED WITH celiac disease (ortholog); inflammatory bowel disease (ortholog); T-Lymphocytopenia (ortholog); FOUND IN cell-cell junction (ortholog); COP9 signalosome (ortholog); cytoplasm (ortholog) NW_004955436 8743835 8909040 - 102010627 AGCD01033751;AGCD01033752;GBDI01273776;XM_005389174;XM_005389175;XM_005389176;XM_005389177 XP_005389231;XP_005389232;XP_005389233;XP_005389234 MODEL 9038005 protein-coding Pdzrn4 PDZ domain containing ring finger 4 ASSOCIATED WITH silicosis (ortholog) NW_004955500 638027 1007585 + 102029643 AGCD01063640;AGCD01063641;GBCE01168746;XM_005406572;XM_013505727 XP_005406629;XP_013361181 MODEL 8846396 pseudo LOC102009388 liver carboxylesterase 2-like NW_004955484 9699400 9714908 - 102009388 AGCD01058425 MODEL 8981652 protein-coding Brat1 BRCA1 associated ATM activator 1 ENCODES a protein that exhibits ribonuclease inhibitor activity (ortholog); INVOLVED IN apoptotic process (ortholog); cell migration (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH D-bifunctional protein deficiency (ortholog); Dravet syndrome (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955460 12662005 12674223 - 102012169 AGCD01048661;GBDI01062771;XM_005397864;XM_013521148;XM_013521149;XM_013521150;XM_013521151;XM_013521152 XP_005397921;XP_013376602;XP_013376603;XP_013376604;XP_013376605;XP_013376606 MODEL 8721359 protein-coding Pcm1 pericentriolar material 1 ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN centrosome cycle (ortholog); cilium assembly (ortholog); cytoplasmic microtubule organization (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 53 (ortholog); schizophrenia (ortholog); Thyroid Carcinoma, Nonmedullary 1 (ortholog); FOUND IN apical part of cell (ortholog); centriolar satellite (ortholog); centriole (ortholog) NW_004955552 1675477 1768902 - 102020848 AGCD01072784;AGCD01072785;AGCD01072786;AGCD01072787;GBDF01001895;XM_005412193;XM_005412194;XM_005412195;XM_005412196;XM_005412197;XM_005412198;XM_013508598;XM_013508599;XM_013508600;XM_013508601 XP_005412250;XP_005412251;XP_005412252;XP_005412253;XP_005412254;XP_005412255;XP_013364052;XP_013364053;XP_013364054;XP_013364055 MODEL 8745670 protein-coding Ptk7 protein tyrosine kinase 7 (inactive) ENCODES a protein that exhibits kinase activity (ortholog); transmembrane receptor protein tyrosine kinase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); axis elongation (ortholog); cell migration (ortholog); PARTICIPATES IN Wnt signaling, the planar cell polarity pathway; ASSOCIATED WITH infantile Refsum disease (ortholog); Neurodevelopmental Disorders (ortholog); Zellweger syndrome (ortholog); FOUND IN cell-cell junction (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955437 9037933 9094237 + 102019323 AGCD01034515;GBDK01100991;XM_005390133;XM_013516906 XP_005390190;XP_013372360 MODEL 10093339 protein-coding LOC106149804 uncharacterized LOC106149804 NW_004955454 11496620 11541391 + 106149804 AGCD01045388;AGCD01045389;AGCD01045390;GBDF01131976;XM_013520016 XP_013375470 MODEL 8817191 pseudo LOC102006386 muskelin-like NW_004955526 3588762 3591143 - 102006386 AGCD01069337 MODEL 8981117 protein-coding Slc37a3 solute carrier family 37 member 3 ENCODES a protein that exhibits glucose 6-phosphate:phosphate antiporter activity (ortholog); xenobiotic transmembrane transporter activity (ortholog); INVOLVED IN glucose-6-phosphate transport (ortholog); phosphate ion transmembrane transport (ortholog); xenobiotic transmembrane transport (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); RASopathy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); lysosomal membrane (ortholog) NW_004955494 2891415 2933067 + 102022095 AGCD01061455;GBDK01189500;XM_005405423;XM_013504991;XM_013504992 XP_005405480;XP_013360445;XP_013360446 MODEL 10193133 pseudo LOC106146976 nucleolin pseudogene NW_004955510 6050251 6052549 + 106146976 AGCD01066299 MODEL 8981267 protein-coding Slco2a1 solute carrier organic anion transporter family member 2A1 ENCODES a protein that exhibits prostaglandin transmembrane transporter activity (ortholog); INVOLVED IN prostaglandin transport (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); basal cell carcinoma (ortholog); Colorectal Neoplasms (ortholog); FOUND IN basal plasma membrane (ortholog) NW_004955501 4544065 4623615 + 102025267 AGCD01064131;AGCD01064132;GBDK01017783;XM_013505788 XP_013361242 MODEL 9044027 protein-coding Rgs16 regulator of G protein signaling 16 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog) NW_004955406 21439536 21444822 - 102018361 AGCD01006128;GBDI01354177;XM_005375005 XP_005375062 MODEL 8923945 protein-coding LOC102011292 translation initiation factor IF-2-like NW_004955411 5098018 5101336 - 102011292 AGCD01011594;GBDF01039872;XM_005377923 XP_005377980 MODEL 8910465 protein-coding LOC102010912 claudin-34-like NW_004955493 6423748 6424605 - 102010912 AGCD01061103;GBDF01011330;GBDK01381044;XM_005405150 XP_005405207 MODEL 9008764 protein-coding Rab11fip4 RAB11 family interacting protein 4 ENCODES a protein that exhibits protein homodimerization activity (ortholog); small GTPase binding (ortholog); INVOLVED IN regulation of cytokinesis (ortholog); ASSOCIATED WITH cerebral palsy (ortholog); Developmental Disabilities (ortholog); neurofibromatosis 1 (ortholog); FOUND IN cleavage furrow (ortholog); endocytic vesicle (ortholog); endosome (ortholog) NW_004955481 6501704 6554448 + 102010695 AGCD01057029;AGCD01057030;GBBH01052215;XM_013503485;XM_013503486 XP_013358939;XP_013358940 MODEL 9023519 protein-coding LOC102010505 olfactory receptor 5A1 ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog) NW_004955511 3947526 3953543 + 102010505 AGCD01066484;XM_005408061 XP_005408118 MODEL 8912018 pseudo LOC102015471 deoxynucleotidyltransferase terminal-interacting protein 2 pseudogene NW_004955450 17764164 17765669 - 102015471 AGCD01042884 MODEL 8833144 protein-coding Nat9 N-acetyltransferase 9 FOUND IN protein-containing complex (ortholog) NW_004955553 1658932 1664342 - 102014089 AGCD01072893;GBDF01190843;XM_005412253;XM_005412254;XM_013508658 XP_005412310;XP_005412311;XP_013364112 MODEL 8832187 pseudo LOC102008250 cytochrome c oxidase assembly protein COX16 homolog, mitochondrial pseudogene NW_004955434 4045849 4046615 - 102008250 AGCD01032154;XM_005388576;XM_005388577 MODEL 405822147 snorna SNORD110 small nucleolar RNA, C/D box 110 9010182 trna trnE(ttc) tRNA-Glu MT 14092 14160 - 15822214 8828038 protein-coding LOC102009392 60S ribosomal protein L10-like NW_004955491 5944474 5944994 - 102009392 AGCD01060510;XM_005404834 XP_005404891 MODEL 8897919 protein-coding Sema6c semaphorin 6C ENCODES a protein that exhibits semaphorin receptor binding (ortholog); INVOLVED IN axon guidance (ortholog); negative regulation of axon extension (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog) NW_004955588 490581 504436 - 102006845 AGCD01076114;AGCD01076115;GBCB01005149;GBDF01125414;XM_013509907 XP_013365361 MODEL 8781350 protein-coding Rras RAS related ENCODES a protein that exhibits GDP binding (ortholog); GTPase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell migration (ortholog); face morphogenesis (ortholog); leukocyte differentiation (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH COVID-19 (ortholog); developmental and epileptic encephalopathy 12 (ortholog); juvenile myelomonocytic leukemia (ortholog) NW_004955559 1244658 1248774 + 102011367 AGCD01073638;GBDF01188765;XM_005412862 XP_005412919 MODEL 8790731 pseudo LOC102017390 DNA/RNA-binding protein KIN17 pseudogene NW_004955440 8992888 9029279 + 102017390 AGCD01036366;AGCD01036367 MODEL 9000862 protein-coding Snrpa1 small nuclear ribonucleoprotein polypeptide A' INVOLVED IN mRNA splicing, via spliceosome (ortholog); spermatogenesis (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH connective tissue disease (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear body (ortholog); nuclear speck (ortholog) NW_004955416 28166885 28178404 - 102010799 AGCD01017626;GBDJ01141602;XM_005381647 XP_005381704 MODEL 39133521 snorna U3 Small nucleolar RNA U3 8931707 ncrna LOC102021485 uncharacterized LOC102021485 NW_004955437 18547542 18548483 - 102021485 AGCD01034802;GBDJ01307924;XR_261893 MODEL 8903369 protein-coding Pcmt1 protein-L-isoaspartate (D-aspartate) O-methyltransferase ENCODES a protein that exhibits protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (ortholog); S-adenosylmethionine-dependent methyltransferase activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); negative regulation of cardiac muscle cell apoptotic process (ortholog); protein methylation (ortholog); PARTICIPATES IN homocysteine metabolic pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Aortic Injuries (ortholog); congestive heart failure (ortholog); FOUND IN basolateral plasma membrane (ortholog); brush border membrane (ortholog); cytosol (ortholog) NW_004955439 11480094 11531842 - 102008460 AGCD01035910;AGCD01035911;AGCD01035912;GBDK01236603;XM_005390593;XM_005390594;XM_013517318;XR_261983;XR_261984 XP_005390650;XP_005390651;XP_013372772 MODEL 8825850 protein-coding Phka1 phosphorylase kinase regulatory subunit alpha 1 INVOLVED IN positive regulation of glycogen catabolic process (ortholog); protein autophosphorylation (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Cornelia de Lange syndrome 5 (ortholog); FOUND IN phosphorylase kinase complex (ortholog) NW_004955475 12020278 12172427 - 102014774 AGCD01055177;AGCD01055178;AGCD01055179;AGCD01055180;AGCD01055181;AGCD01055182;AGCD01055183;GBCB01004235;XM_005401691;XM_005401692;XM_005401695;XM_005401696;XM_013502821 XP_005401748;XP_005401749;XP_005401752;XP_005401753;XP_013358275 MODEL 8909101 pseudo LOC102018902 transcriptional repressor protein YY1 pseudogene NW_004955409 29284945 29286353 + 102018902 AGCD01010258 MODEL 8759747 pseudo LOC102010913 cationic trypsin-3-like NW_004955494 1211669 1216586 + 102010913 AGCD01061392 MODEL 10220772 pseudo LOC102011300 Ig heavy chain V-I region 5-like NW_004955470 472783 473374 - 102011300 AGCD01052614 MODEL 8905887 protein-coding Trim25 tripartite motif containing 25 ENCODES a protein that exhibits RIG-I binding (ortholog); transcription coactivator activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to leukemia inhibitory factor (ortholog); cytoplasmic pattern recognition receptor signaling pathway (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); Joubert syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955451 5918287 5934252 + 102012821 AGCD01043189;AGCD01043190;GBDJ01024909;XM_005394067 XP_005394124 MODEL 8760463 ncrna LOC102007892 uncharacterized LOC102007892 NW_004955417 12654544 12663569 - 102007892 AGCD01018162;GBDF01040430;XR_001233450;XR_260476 MODEL 8786859 protein-coding Plin3 perilipin 3 INVOLVED IN cellular response to glucose starvation (ortholog); lipid droplet disassembly (ortholog); lipid storage (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); lipid droplet (ortholog) NW_004955495 4177701 4190052 + 102003035 AGCD01061900;AGCD01061901;GBDF01047898;XM_005405777;XM_013505193;XM_013505194 XP_005405834;XP_013360647;XP_013360648 MODEL 8783294 protein-coding Palmd palmdelphin ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); dendritic spine (ortholog) NW_004955435 4464969 4519683 + 102029550 AGCD01032832;GBDF01280632;XM_005388787 XP_005388844 MODEL 8879528 protein-coding Themis2 thymocyte selection associated family member 2 INVOLVED IN regulation of B cell activation (ortholog); T cell receptor signaling pathway (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955452 7058703 7075114 + 102010662 AGCD01044131;GBDK01197221;XM_005394933;XM_013519612;XM_013519613;XM_013519614 XP_005394990;XP_013375066;XP_013375067;XP_013375068 MODEL 8813340 pseudo LOC102005334 probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial pseudogene NW_004955453 2433189 2438637 - 102005334 AGCD01044629 MODEL 8968915 protein-coding Pea15 proliferation and apoptosis adaptor protein 15 INVOLVED IN negative regulation of D-glucose import (ortholog); negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (ortholog); positive regulation of extrinsic apoptotic signaling pathway via death domain receptors (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); Experimental Liver Cirrhosis (ortholog); familial hemiplegic migraine (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955468 11981956 11991427 + 102015498 AGCD01052140;GBCE01004193;XM_005400198;XM_013522420 XP_005400255;XP_013377874 MODEL 8830654 protein-coding LOC102011301 olfactory receptor 56B1-like NW_004955414 21711391 21712350 + 102011301 AGCD01015429;XM_005380104 XP_005380161 MODEL 8979663 protein-coding Brca1 BRCA1 DNA repair associated ENCODES a protein that exhibits chromatin binding (ortholog); damaged DNA binding (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to indole-3-methanol (ortholog); cellular response to ionizing radiation (ortholog); cellular response to tumor necrosis factor (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; forkhead class A signaling pathway; homologous recombination pathway of double-strand break repair; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Animal Mammary Neoplasms (ortholog); bilateral breast cancer (ortholog); FOUND IN BRCA1-A complex (ortholog); BRCA1-B complex (ortholog); BRCA1-BARD1 complex (ortholog) NW_004955451 16819463 16870780 - 102029928 AGCD01043709;AGCD01043710;AGCD01043711;GBDF01225401;GBDF01304989;JN414194;XM_005394496;XM_013519228;XM_013519229;XM_013519230;XM_013519231;XR_001235969 AEP18221;XP_005394553;XP_013374682;XP_013374683;XP_013374684;XP_013374685 MODEL 8893042 pseudo LOC102011715 pre-mRNA-splicing factor SLU7 pseudogene NW_004955402 54098472 54100151 + 102011715 AGCD01001386 MODEL 8709250 ncrna LOC102009395 uncharacterized LOC102009395 NW_004955422 28736276 28739914 + 102009395 AGCD01023368;GBDF01220110;XR_260928 MODEL 8949575 protein-coding Polr1a RNA polymerase I subunit A ENCODES a protein that exhibits chromatin binding (ortholog); DNA-directed RNA polymerase activity (ortholog); DNA/RNA hybrid binding (ortholog); INVOLVED IN negative regulation of protein localization to nucleolus (ortholog); rRNA transcription (ortholog); transcription by RNA polymerase I (ortholog); PARTICIPATES IN nucleotide excision repair pathway; RNA polymerase I transcription pathway; ASSOCIATED WITH acrofacial dysostosis Cincinnati type (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 31 (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); nucleus (ortholog) NW_004955424 1507935 1595068 + 102021143 AGCD01024237;AGCD01024238;AGCD01024239;AGCD01024240;GBDK01177247;XM_005385408;XM_005385411 XP_005385465;XP_005385468 MODEL 8958105 protein-coding Osbpl7 oxysterol binding protein like 7 ENCODES a protein that exhibits cholesterol binding (ortholog); INVOLVED IN cellular response to cholesterol (ortholog); positive regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH cholangiocarcinoma (ortholog); encephalopathy due to defective mitochondrial and peroxisomal fission 1 (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN autophagosome (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955451 13289938 13301243 + 102016224 AGCD01043464;AGCD01043465;GBDI01136571;GBDJ01230261;XM_013519396 XP_013374850 MODEL 8926827 protein-coding Pals1 protein associated with LIN7 1, MAGUK p55 family member ENCODES a protein that exhibits identical protein binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN central nervous system neuron development (ortholog); cerebral cortex development (ortholog); gene expression (ortholog); ASSOCIATED WITH cerebral palsy (ortholog); Leber congenital amaurosis (ortholog); Leber congenital amaurosis 13 (ortholog); FOUND IN adherens junction (ortholog); apical part of cell (ortholog); cytoplasm (ortholog) NW_004955466 2871445 2937296 - 102016363 AGCD01050769;AGCD01050770;AGCD01050771;AGCD01050772;GBCC01005065;GBCQ01041221;XM_013522001 XP_013377455 MODEL 8758599 ncrna LOC102024177 uncharacterized LOC102024177 NW_004955448 8662974 8691442 - 102024177 AGCD01041450;GBDF01020951;XR_262465 MODEL 9066139 protein-coding Ranbp6 RAN binding protein 6 ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); FOUND IN mitochondrion (ortholog); synapse (ortholog) NW_004955434 9995734 9999194 - 102005836 AGCD01032317;GBBH01071300;XM_005388668;XM_005388670 XP_005388725;XP_005388727 MODEL 9054797 protein-coding LOC102003607 PRAME family member 12-like NW_004955615 28450 30897 - 102003607 AGCD01077247;XM_005414978 XP_005415035 MODEL 8937104 protein-coding LOC102018529 putative olfactory receptor 2B3 NW_004955537 2603825 2604915 - 102018529 AGCD01070933;GBDF01030354;XM_005410626 XP_005410683 MODEL 8853520 pseudo LOC102012508 ADP-ribosylation factor-like protein 2-binding protein pseudogene NW_004955459 6804477 6804982 + 102012508 AGCD01048085;XR_263017 MODEL 39133554 snorna U3 Small nucleolar RNA U3 8834394 pseudo LOC102006759 serum albumin-like NW_004955412 36036768 36051307 + 102006759 AGCD01013427;AGCD01013428;AGCD01013429;AGCD01013430;XM_005378660 MODEL 8917967 protein-coding Snai1 snail family transcriptional repressor 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); E-box binding (ortholog); kinase binding (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); cartilage morphogenesis (ortholog); epithelial cell migration (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Breast Neoplasms (ortholog); cholestasis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); fibrillar center (ortholog) NW_004955445 8232084 8237893 - 102030677 AGCD01039568;GBCQ01013485;XM_005392323 XP_005392380 MODEL 8729807 protein-coding LOC102021486 uncharacterized LOC102021486 NW_004955538 2766334 2771809 - 102021486 AGCD01071138;AGCD01071139;GBBH01020607;XM_005410822;XM_005410823;XM_013507898 XP_005410879;XP_005410880;XP_013363352 MODEL 8807032 protein-coding Natd1 N-acetyltransferase domain containing 1 NW_004955577 1176066 1181139 - 102026271 AGCD01075440;GBCE01099201;GBDK01136185;XM_013509638 XP_013365092 MODEL 8731100 pseudo LOC102018531 thioredoxin pseudogene NW_004955547 1523626 1523939 + 102018531 AGCD01072227 MODEL 8997621 protein-coding Piwil1 piwi like RNA-mediated gene silencing 1 ENCODES a protein that exhibits mRNA binding (ortholog); mRNA cap binding complex binding (ortholog); piRNA binding (ortholog); INVOLVED IN piRNA-mediated gene silencing by mRNA destabilization (ortholog); primary piRNA processing (ortholog); sperm DNA condensation (ortholog); ASSOCIATED WITH male infertility (ortholog); substance-related disorder (ortholog); FOUND IN chromatoid body (ortholog); cytoplasm (ortholog); dense body (ortholog) NW_004955482 1435925 1451067 - 102024230 AGCD01057214;GBDF01008267;XM_013503748 XP_013359202 MODEL 8955739 ncrna LOC102010918 uncharacterized LOC102010918 NW_004955496 4040916 4059796 - 102010918 AGCD01062307;AGCD01062308;GBDF01279073;XR_264175 MODEL 39133742 snorna SNORD115 Small nucleolar RNA SNORD115 8782074 pseudo LOC102010150 high mobility group protein B1 pseudogene NW_004955415 3445227 3445862 + 102010150 AGCD01015938 MODEL 10390678 ncrna LOC106146977 uncharacterized LOC106146977 NW_004955510 3417760 3448466 - 106146977 AGCD01066232;AGCD01066233;AGCD01066234;AGCD01066235;AGCD01066236;GBDF01295426;XR_001231661;XR_001231662 MODEL 9018143 protein-coding Thg1l tRNA-histidine guanylyltransferase 1 like ENCODES a protein that exhibits ATP binding (ortholog); GTP binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN mitochondrial fusion (ortholog); protein homotetramerization (ortholog); response to oxidative stress (ortholog); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 28 (ortholog); Fibrosis (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog); transferase complex (ortholog) NW_004955408 11857380 11863786 + 102017541 AGCD01008319;GBDI01276272;XM_013508818;XM_013508819 XP_013364272;XP_013364273 MODEL 8938294 ncrna LOC102017392 uncharacterized LOC102017392 NW_004955441 8037181 8089805 + 102017392 AGCD01036974;AGCD01036975;GBDK01341736;XR_262055;XR_262056 MODEL 8880823 pseudo LOC102023190 akirin-1 pseudogene NW_004955531 3639705 3640290 + 102023190 AGCD01070077 MODEL 8833359 protein-coding Rgs17 regulator of G protein signaling 17 INVOLVED IN response to amphetamine (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); autosomal recessive spinocerebellar ataxia 8 (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog) NW_004955439 8687775 8805229 + 102025048 AGCD01035806;AGCD01035807;AGCD01035808;AGCD01035809;AGCD01035810;AGCD01035811;AGCD01035812;AGCD01035813;GBDF01116147;XM_005390564;XM_005390565;XM_013517293 XP_005390621;XP_005390622;XP_013372747 MODEL 8991919 protein-coding Spsb1 splA/ryanodine receptor domain and SOCS box containing 1 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog) NW_004955486 4022307 4061111 - 102022195 AGCD01059051;GBCE01040744;XM_005404039;XM_005404040;XM_005404041;XM_005404042 XP_005404096;XP_005404097;XP_005404098;XP_005404099 MODEL 8900974 protein-coding Rab11fip5 RAB11 family interacting protein 5 ENCODES a protein that exhibits gamma-tubulin binding (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); cellular response to type II interferon (ortholog); insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH Alstrom syndrome (ortholog); autistic disorder (ortholog); congenital disorder of glycosylation type IIb (ortholog); FOUND IN centriolar satellite (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955424 12506738 12544284 + 102019291 AGCD01024613;AGCD01024614;GBBH01155266;GBDF01046089;XM_005385572;XM_005385573;XM_005385574 XP_005385629;XP_005385630;XP_005385631 MODEL 8852745 protein-coding Tor1a torsin family 1 member A ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent protein folding chaperone (ortholog); cytoskeletal protein binding (ortholog); INVOLVED IN cell adhesion (ortholog); chaperone-mediated protein folding (ortholog); ERAD pathway (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita-5 (ortholog); autosomal dominant intellectual developmental disorder 43 (ortholog); Contracture (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog) NW_004955513 30655 36299 - 102012790 AGCD01066810;GBDF01083639;XM_005408331 XP_005408388 MODEL 8999009 protein-coding Leng1 leukocyte receptor cluster member 1 ASSOCIATED WITH genetic disease (ortholog); Intellectual Developmental Disorder with Speech Delay, Autism, and Dysmorphic Facies (ortholog) NW_004955604 106509 109564 + 102020509 AGCD01076862;AGCD01076863;GBBH01156148;GBCQ01098557;XM_013510091 XP_013365545 MODEL 8814875 protein-coding Phka2 phosphorylase kinase regulatory subunit alpha 2 INVOLVED IN protein phosphorylation (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH autistic disorder (ortholog); Coffin-Lowry syndrome (ortholog); developmental and epileptic encephalopathy 2 (ortholog); FOUND IN phosphorylase kinase complex (ortholog) NW_004955586 482353 549512 + 102006844 AGCD01076031;GBDJ01314660;XM_005414436;XM_005414437;XM_005414438 XP_005414493;XP_005414494;XP_005414495 MODEL 10131559 protein-coding Plin4 perilipin 4 ASSOCIATED WITH amenorrhea (ortholog); Vacuolar Neuromyopathy (ortholog); FOUND IN cytosol (ortholog); lipid droplet (ortholog); plasma membrane (ortholog) NW_004955495 4417672 4426945 + 106146790 AGCD01061922;GBDK01147195;XM_013505186;XM_013505187 XP_013360640;XP_013360641 MODEL 8849685 protein-coding LOC102006768 uncharacterized LOC102006768 NW_004955415 15273704 15346189 - 102006768 AGCD01016337;AGCD01016338;XM_013512130 XP_013367584 MODEL 9022679 protein-coding LOC102003608 RNA-binding protein 45 NW_004955403 18755127 18773060 - 102003608 AGCD01002110;AGCD01002111;AGCD01002112;GBCQ01097237;GBDJ01233290;XM_005373393;XM_005373395 XP_005373450;XP_005373452 MODEL 8963933 protein-coding Spsb2 splA/ryanodine receptor domain and SOCS box containing 2 ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog) NW_004955413 4471696 4474282 - 102005580 AGCD01013617;GBCQ01008854;XM_005378837;XM_013511345 XP_005378894;XP_013366799 MODEL 8892951 ncrna LOC102007893 uncharacterized LOC102007893 NW_004955417 25416076 25425950 - 102007893 AGCD01018480;GBDF01236896;XR_260494 MODEL 9030355 ncrna LOC102006393 uncharacterized LOC102006393 NW_004955439 11260396 11262507 + 102006393 AGCD01035896;GBBH01057642;XR_261980 MODEL 9061556 protein-coding Rbp3 retinol binding protein 3 ENCODES a protein that exhibits retinol binding (ortholog); PARTICIPATES IN altered retinoid cycle metabolic pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH autoimmune disease (ortholog); cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); FOUND IN cone matrix sheath (ortholog); extracellular space (ortholog); interphotoreceptor matrix (ortholog) NW_004955556 2217528 2225369 + 102014296 AF297280;AGCD01073208;AJ427246;GBDF01290208;XM_005412613 AAK62259;CAD20284;XP_005412670 MODEL 8761417 protein-coding Trim26 tripartite motif containing 26 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN host-mediated suppression of symbiont invasion (ortholog); innate immune response (ortholog); positive regulation of DNA-binding transcription factor activity (ortholog); ASSOCIATED WITH megacolon (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955583 303081 325560 - 102013127 AGCD01075810;AGCD01075811;GBCB01073423;GBCE01135032;XM_013509781 XP_013365235 MODEL 8771179 ncrna LOC102018535 uncharacterized LOC102018535 NW_004955443 7145804 7158741 + 102018535 AGCD01038273;GBDJ01214408;XR_001235482;XR_001235483 MODEL 8785323 protein-coding Slc37a4 solute carrier family 37 member 4 ENCODES a protein that exhibits glucose 6-phosphate:phosphate antiporter activity (ortholog); glucose-6-phosphate transmembrane transporter activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); gluconeogenesis (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN electron transport chain pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); congenital disorder of glycosylation (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955412 20133652 20140134 - 102022899 AGCD01012994;GBCQ01000749;XM_005378292;XM_013511130;XM_013511131;XM_013511132;XM_013511133;XM_013511134;XM_013511135 XP_005378349;XP_013366584;XP_013366585;XP_013366586;XP_013366587;XP_013366588;XP_013366589 MODEL 8864106 protein-coding Nav1 neuron navigator 1 INVOLVED IN microtubule bundle formation (ortholog); neuron migration (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN axon initial segment (ortholog); microtubule cytoskeleton (ortholog) NW_004955406 37644715 37896759 + 102017193 AGCD01006578;AGCD01006579;AGCD01006580;GBCE01045172;XM_005375186;XM_005375187;XM_005375188;XM_005375189;XM_005375191;XM_013522266 XP_005375243;XP_005375244;XP_005375245;XP_005375246;XP_005375248;XP_013377720 MODEL 8721093 ncrna LOC102010512 uncharacterized LOC102010512 NW_004955432 10654891 10664188 - 102010512 AGCD01030936;GBCE01078510;XR_001234668;XR_261522 MODEL 8808246 protein-coding Snrpb small nuclear ribonucleoprotein polypeptides B and B1 ENCODES a protein that exhibits histone pre-mRNA DCP binding (ortholog); RNA binding (ortholog); telomerase RNA binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); protein methylation (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH cerebrocostomandibular syndrome (ortholog); Disease Progression (ortholog); genetic disease (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955415 13522638 13530725 - 102015006 AGCD01016252;GBDI01021505;XM_005380752;XM_005380753;XM_005380754;XM_005380755 XP_005380809;XP_005380810;XP_005380811;XP_005380812 MODEL 8999503 protein-coding Brca2 BRCA2 DNA repair associated ENCODES a protein that exhibits gamma-tubulin binding (ortholog); histone acetyltransferase activity (ortholog); histone H3 acetyltransferase activity (ortholog); INVOLVED IN brain development (ortholog); cell population proliferation (ortholog); cellular response to ionizing radiation (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH atrophy of testis (ortholog); bilateral breast cancer (ortholog); breast cancer (ortholog); FOUND IN BRCA2-MAGE-D1 complex (ortholog); centrosome (ortholog); chromosome (ortholog) NW_004955431 13449287 13526878 - 102011896 AGCD01030308;GBCB01111140;JN414336;XM_005387715;XM_005387716;XM_005387717;XM_005387718;XM_005387719;XM_005387720;XM_013515889;XM_013515890 AEP18373;XP_005387772;XP_005387773;XP_005387774;XP_005387775;XP_005387776;XP_005387777;XP_013371343;XP_013371344 MODEL 8896772 protein-coding LOC102024178 uncharacterized LOC102024178 NW_004955584 208498 209484 - 102024178 AGCD01075926;GBDF01224162;XM_005414409 XP_005414466 MODEL 8719963 protein-coding Slc24a5 solute carrier family 24 member 5 ENCODES a protein that exhibits calcium ion transmembrane transporter activity (ortholog); calcium, potassium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion import (ortholog); melanin biosynthetic process (ortholog); monoatomic ion transmembrane transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN trans-Golgi network (ortholog) NW_004955409 5747624 5768122 - 102013803 AGCD01009322;AGCD01009323;GBDI01093137;XM_005376708 XP_005376765 MODEL 8801404 pseudo LOC102018903 ribonucleoside-diphosphate reductase subunit M2 pseudogene NW_004955460 9878566 9879060 - 102018903 AGCD01048558 MODEL 9057054 protein-coding Osbpl8 oxysterol binding protein like 8 ENCODES a protein that exhibits cholesterol binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); phosphatidylserine binding (ortholog); INVOLVED IN fat cell differentiation (ortholog); negative regulation of cell migration (ortholog); phospholipid transport (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 10 (ortholog); fundus dystrophy (ortholog); FOUND IN cortical endoplasmic reticulum (ortholog); endoplasmic reticulum (ortholog); nuclear membrane (ortholog) NW_004955405 15577003 15728983 - 102013045 AGCD01004948;AGCD01004949;AGCD01004950;AGCD01004951;GBCQ01036887;XM_005374344;XM_005374345;XM_013517742;XM_013517747;XM_013517753 XP_005374401;XP_005374402;XP_013373196;XP_013373201;XP_013373207 MODEL 8738192 protein-coding Pals2 protein associated with LIN7 2, MAGUK p55 family member PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH COVID-19 (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955410 26593123 26697553 + 102020988 AGCD01011196;AGCD01011197;AGCD01011198;AGCD01011199;GBCE01045240;XM_005377421;XM_013510594;XM_013510595;XM_013510596;XM_013510597;XM_013510598 XP_005377478;XP_013366048;XP_013366049;XP_013366050;XP_013366051;XP_013366052 MODEL 8720449 pseudo LOC102012517 60S ribosomal protein L38 pseudogene NW_004955412 19711838 19712048 + 102012517 AGCD01012971 MODEL 8958879 protein-coding Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha ENCODES a protein that exhibits cAMP binding (ortholog); cAMP-dependent protein kinase inhibitor activity (ortholog); cAMP-dependent protein kinase regulator activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cardiac muscle cell proliferation (ortholog); cellular response to glucagon stimulus (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH acrodysostosis (ortholog); Acrodysostosis 1, with or without Hormone Resistance (ortholog); acute promyelocytic leukemia (ortholog); FOUND IN axoneme (ortholog); cAMP-dependent protein kinase complex (ortholog); centrosome (ortholog) NW_004955478 4241283 4262119 - 102026746 AGCD01055845;GBDI01009060;GBDJ01090068;XM_005402117 XP_005402174 MODEL 10122174 ncrna LOC106149805 uncharacterized LOC106149805 NW_004955454 2069603 2085918 - 106149805 AGCD01045007;AGCD01045008;AGCD01045009;GBDF01231824;XR_001236216;XR_001236217 MODEL 9033385 pseudo LOC102021495 vacuole membrane protein 1 pseudogene NW_004955446 12582761 12583969 - 102021495 AGCD01040238 MODEL 8996352 pseudo LOC102005336 60S ribosomal protein L12-like NW_004955406 7460294 7460841 + 102005336 AGCD01005771 MODEL 8777635 pseudo LOC102011308 protein slowmo homolog 2 pseudogene NW_004955415 30282254 30283847 + 102011308 AGCD01016660 MODEL 9065087 pseudo LOC102006771 thyroid hormone receptor-associated protein 3-like NW_004955416 9263788 9266478 + 102006771 AGCD01017083 MODEL 8728334 ncrna LOC102010919 uncharacterized LOC102010919 NW_004955424 15047979 15112987 + 102010919 AGCD01024683;AGCD01024684;AGCD01024685;AGCD01024686;AGCD01024687;AGCD01024688;AGCD01024689;GBBH01137283;XR_001234214;XR_001234215;XR_001234216;XR_001234217;XR_001234218;XR_001234219;XR_001234220;XR_001234221;XR_001234222;XR_001234223 MODEL 9022864 protein-coding Sema6d semaphorin 6D ENCODES a protein that exhibits receptor ligand activity (ortholog); semaphorin receptor binding (ortholog); INVOLVED IN negative regulation of axon extension (ortholog); negative regulation of smooth muscle cell migration (ortholog); positive regulation of smooth muscle cell migration (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); Golgi apparatus (ortholog) NW_004955409 6086178 6143702 - 102015930 AGCD01009330;GBCE01134341;XM_005376714;XM_005376717;XM_005376718;XM_005376719;XM_005376720;XM_013510307;XM_013510308;XM_013510309;XM_013510310;XM_013510311 XP_005376771;XP_005376774;XP_005376775;XP_005376776;XP_005376777;XP_013365761;XP_013365762;XP_013365763;XP_013365764;XP_013365765 MODEL 9003964 ncrna LOC102011719 uncharacterized LOC102011719 NW_004955799 1703 3502 + 102011719 AGCD01078370;GBDF01089331;XR_265186 MODEL 8816820 protein-coding Spsb3 splA/ryanodine receptor domain and SOCS box containing 3 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN negative regulation of cGAS/STING signaling pathway (ortholog); negative regulation of epithelial to mesenchymal transition (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog); nucleus (ortholog) NW_004955442 15486845 15493422 + 102020723 AGCD01037875;GBBH01143805;XM_005391518;XM_005391520;XM_005391521;XM_005391522;XM_005391523 XP_005391575;XP_005391577;XP_005391578;XP_005391579;XP_005391580 MODEL 10063032 ncrna LOC106146978 uncharacterized LOC106146978 NW_004955510 1223496 1224382 - 106146978 AGCD01066189;GBDF01285788;XR_001231665 MODEL 8765317 protein-coding Polr1b RNA polymerase I subunit B ENCODES a protein that exhibits DNA-directed RNA polymerase activity (ortholog); DNA/RNA hybrid binding (ortholog); zinc ion binding (ortholog); INVOLVED IN embryo implantation (ortholog); nucleologenesis (ortholog); rRNA transcription (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH Mandibulofacial Dysostosis (ortholog); Treacher Collins syndrome (ortholog); Treacher Collins syndrome 4 (ortholog); FOUND IN chromosome (ortholog); cytosol (ortholog); fibrillar center (ortholog) NW_004955470 1714156 1737749 - 102026311 AGCD01052653;AGCD01052654;GBDI01296356;XM_005400601;XM_005400604 XP_005400658;XP_005400661 MODEL 8825996 protein-coding Elovl4 ELOVL fatty acid elongase 4 ENCODES a protein that exhibits fatty acid elongase activity (ortholog); INVOLVED IN fatty acid elongation, polyunsaturated fatty acid (ortholog); fatty acid elongation, saturated fatty acid (ortholog); very long-chain fatty acid biosynthetic process (ortholog); PARTICIPATES IN alpha-linolenic acid metabolic pathway; linoleic acid metabolic pathway; ASSOCIATED WITH corneal dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955502 7764451 7774503 - 102016495 AGCD01064461;GBCC01001147;XM_013505842 XP_013361296 MODEL 8704123 ncrna LOC102023192 uncharacterized LOC102023192 NW_004955437 3136338 3136884 - 102023192 AGCD01034298;GBDF01194081;XR_001235054 MODEL 8779107 protein-coding Thnsl1 threonine synthase like 1 FOUND IN mitochondrion (ortholog) NW_004955429 4169170 4208097 - 102008131 AGCD01028482;AGCD01028483;GBDF01080744;XM_005386902;XM_005386903;XM_005386904;XM_013515491;XM_013515492;XM_013515493 XP_005386959;XP_005386960;XP_005386961;XP_013370945;XP_013370946;XP_013370947 MODEL 39133556 snorna U3 Small nucleolar RNA U3 8825582 protein-coding Prtfdc1 phosphoribosyl transferase domain containing 1 ENCODES a protein that exhibits hypoxanthine phosphoribosyltransferase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN GMP catabolic process (ortholog); guanine salvage (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Mouth Neoplasms (ortholog); Ovarian Neoplasms (ortholog) NW_004955429 4234806 4325896 + 102007140 AGCD01028484;AGCD01028485;AGCD01028486;AGCD01028487;GBCQ01013640;XM_005386898 XP_005386955 MODEL 8833182 protein-coding LOC102017398 myeloid cell surface antigen CD33-like NW_004955558 1182513 1194080 - 102017398 AGCD01073421;AGCD01073422;GBDJ01201554;XM_005412700;XM_013508896 XP_005412757;XP_013364350 MODEL 8811856 trna trnF(gaa) tRNA-Phe MT 1 66 + 15822237 8858931 pseudo LOC102024180 protein DBF4 homolog A pseudogene NW_004955612 134262 137323 + 102024180 AGCD01077180 MODEL 8863270 protein-coding Polr1c RNA polymerase I and III subunit C PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH CAKUT (ortholog); combined oxidative phosphorylation deficiency (ortholog); combined oxidative phosphorylation deficiency 8 (ortholog); FOUND IN cytoplasm (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955437 9346397 9350591 + 102011146 AGCD01034527;GBDJ01006305;XM_005389779 XP_005389836 MODEL 9056150 protein-coding Tor1aip1 torsin 1A interacting protein 1 ENCODES a protein that exhibits ATPase activator activity (ortholog); ATPase binding (ortholog); cytoskeletal protein binding (ortholog); INVOLVED IN nuclear membrane organization (ortholog); positive regulation of ATP-dependent activity (ortholog); protein localization to nuclear envelope (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2Y (ortholog); FOUND IN nuclear envelope (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955406 19122906 19152458 + 102005890 AGCD01006074;AGCD01006075;GBDF01085103;XM_005374964;XM_005374965;XM_013521233;XM_013521240;XM_013521241;XM_013521247;XM_013521257 XP_005375021;XP_005375022;XP_013376687;XP_013376694;XP_013376695;XP_013376701;XP_013376711 MODEL 8913105 protein-coding Slco2b1 solute carrier organic anion transporter family member 2B1 ENCODES a protein that exhibits bile acid transmembrane transporter activity (ortholog); organic anion transmembrane transporter activity (ortholog); prostaglandin transmembrane transporter activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); liver development (ortholog); organic anion transport (ortholog); PARTICIPATES IN statin pharmacokinetics pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog); liver cancer (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); plasma membrane (ortholog) NW_004955414 16615012 16664784 - 102028951 AGCD01015220;AGCD01015221;AGCD01015222;GBDJ01238886;XM_013512025;XM_013512026 XP_013367479;XP_013367480 MODEL 8849045 protein-coding Leng8 leukocyte receptor cluster member 8 NW_004955567 1539537 1552170 + 102012911 AGCD01074480;AGCD01074481;GBDJ01334723;XM_005413378;XM_005413379;XM_013509248 XP_005413435;XP_005413436;XP_013364702 MODEL 8857548 pseudo LOC102009396 kinesin-associated protein 3 pseudogene NW_004955422 9676287 9678648 + 102009396 AGCD01022717 MODEL 8881814 ncrna LOC102006395 uncharacterized LOC102006395 NW_004955440 17375532 17384121 + 102006395 AGCD01036569;GBDF01080603;XR_262034 MODEL 8987477 ncrna LOC102006774 uncharacterized LOC102006774 NW_004955482 2917132 2929375 + 102006774 AGCD01057257;GBDF01076956;XR_263823 MODEL 8845116 protein-coding LOC102018539 zinc finger protein 33B-like NW_004955445 10896408 10911266 + 102018539 AGCD01039680;GBDF01291239;XM_005392376 XP_005392433 MODEL 8751044 protein-coding Ranbp9 RAN binding protein 9 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN negative regulation of ERK1 and ERK2 cascade (ortholog); positive regulation of amyloid precursor protein catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955465 1042649 1122824 + 102010784 AGCD01050330;AGCD01050331;GBBH01102333;GBDF01003318;XM_005398797 XP_005398854 MODEL 8833008 protein-coding Slc38a1 solute carrier family 38 member 1 ENCODES a protein that exhibits alanine:sodium symporter activity (ortholog); amino acid:sodium symporter activity (ortholog); glycine:sodium symporter activity (ortholog); INVOLVED IN amino acid import (ortholog); female pregnancy (ortholog); gamma-aminobutyric acid biosynthetic process (ortholog); ASSOCIATED WITH Experimental Seizures (ortholog); hepatocellular carcinoma (ortholog); FOUND IN axon (ortholog); basolateral plasma membrane (ortholog); external side of apical plasma membrane (ortholog) NW_004955500 5393211 5468827 - 102011887 AGCD01063837;AGCD01063838;AGCD01063839;AGCD01063840;GBCC01020975;XM_005406597;XM_013505700;XR_001231494 XP_005406654;XP_013361154 MODEL 8942620 protein-coding Rgs18 regulator of G protein signaling 18 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); regulation of G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); Hyperparathyroidism 1 (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog) NW_004955406 29573127 29594991 + 102016232 AGCD01006335;GBDK01432974;XM_005375096 XP_005375153 MODEL 8888737 protein-coding Snrpb2 small nuclear ribonucleoprotein polypeptide B2 ENCODES a protein that exhibits snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH connective tissue disease (ortholog); disease of cellular proliferation (ortholog); familial hyperinsulinemic hypoglycemia 1 (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); fibrillar center (ortholog) NW_004955415 25880013 25889295 + 102007758 AGCD01016587;GBDF01052661;XM_005380902 XP_005380959 MODEL 9055997 protein-coding Rab12 RAB12, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); INVOLVED IN cellular response to type II interferon (ortholog); endosome to lysosome transport (ortholog); positive regulation of macroautophagy (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); intellectual disability (ortholog); Myocardial Ischemia (ortholog); FOUND IN autophagosome (ortholog); lysosome (ortholog); phagocytic vesicle (ortholog) NW_004955402 3102709 3109701 - 102028917 AGCD01000096;GBCB01005815;GBDK01084463;XM_013516234 XP_013371688 MODEL 8770997 protein-coding Nav2 neuron navigator 2 ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); heparin binding (ortholog); INVOLVED IN glossopharyngeal nerve development (ortholog); locomotory behavior (ortholog); nervous system development (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Hirschsprung's disease (ortholog); intellectual disability (ortholog); FOUND IN extracellular matrix (ortholog); interstitial matrix (ortholog); nucleoplasm (ortholog) NW_004955476 614215 996450 + 102004700 AGCD01055196;AGCD01055197;AGCD01055198;AGCD01055199;AGCD01055200;GBBH01078654;XM_005401717;XM_005401718;XM_013502960;XM_013502961;XM_013502962 XP_005401774;XP_005401775;XP_013358414;XP_013358415;XP_013358416 MODEL 8824520 pseudo LOC102003610 DCN1-like protein 1 pseudogene NW_004955757 39 601 + 102003610 AGCD01078282 MODEL 8823580 protein-coding Osbpl9 oxysterol binding protein like 9 FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955464 7298410 7446091 - 102025220 AGCD01050057;AGCD01050058;AGCD01050059;AGCD01050060;GBBH01090909;GBCE01095904;XM_005398602 XP_005398659 MODEL 8703620 protein-coding Plin5 perilipin 5 ENCODES a protein that exhibits identical protein binding (ortholog); lipase binding (ortholog); INVOLVED IN lipid droplet organization (ortholog); lipid storage (ortholog); mitochondrion localization (ortholog); ASSOCIATED WITH amenorrhea (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955495 4406590 4414783 + 102008639 AGCD01061922;GBCB01043643;XM_013505191;XM_013505192 XP_013360645;XP_013360646 MODEL 8936844 ncrna LOC102005337 uncharacterized LOC102005337 NW_004955406 13632067 13716155 - 102005337 AGCD01005948;AGCD01005949;GBDF01163324;XR_001236425;XR_001236426;XR_001236427 MODEL 8797280 protein-coding Pam peptidylglycine alpha-amidating monooxygenase ENCODES a protein that exhibits calcium ion binding (ortholog); chromatin binding (ortholog); copper ion binding (ortholog); INVOLVED IN fatty acid primary amide biosynthetic process (ortholog); heart development (ortholog); lactation (ortholog); PARTICIPATES IN melanocortin system pathway; ASSOCIATED WITH anxiety disorder (ortholog); Brain Hypoxia (ortholog); Experimental Arthritis (ortholog); FOUND IN cell surface (ortholog); chromatin (ortholog); condensed chromosome (ortholog) NW_004955418 10953044 11107668 - 102030078 AGCD01018992;AGCD01018993;AGCD01018994;AY533221;GBCB01022629;GBDF01085228;XM_013512971 XP_013368425 MODEL 9013165 protein-coding Piwil2 piwi like RNA-mediated gene silencing 2 ENCODES a protein that exhibits mRNA binding (ortholog); piRNA binding (ortholog); RNA endonuclease activity (ortholog); INVOLVED IN germ-line stem cell population maintenance (ortholog); negative regulation of circadian rhythm (ortholog); oogenesis (ortholog); ASSOCIATED WITH celiac disease (ortholog); Conotruncal Cardiac Defects (ortholog); male infertility (ortholog); FOUND IN chromatoid body (ortholog); cytoplasm (ortholog); dense body (ortholog) NW_004955403 45737674 45819478 + 102005988 AGCD01002826;AGCD01002827;AGCD01002828;AGCD01002829;AGCD01002830;AGCD01002831;AGCD01002832;AGCD01002833;AGCD01002834;AGCD01002835;AGCD01002836;GBDK01179013;XM_005373656;XM_013513815 XP_005373713;XP_013369269 MODEL 9063749 protein-coding Prkar1b protein kinase cAMP-dependent type I regulatory subunit beta ENCODES a protein that exhibits cAMP binding (ortholog); cAMP-dependent protein kinase inhibitor activity (ortholog); cAMP-dependent protein kinase regulator activity (ortholog); INVOLVED IN learning or memory (ortholog); modulation of chemical synaptic transmission (ortholog); negative regulation of cAMP/PKA signal transduction (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Emery-Dreifuss muscular dystrophy (ortholog); hypertension (ortholog); MARBACH-SCHAAF NEURODEVELOPMENTAL SYNDROME (ortholog); FOUND IN cAMP-dependent protein kinase complex (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955460 8357890 8479875 - 102010036 AGCD01048515;AGCD01048516;AGCD01048517;GBDJ01276904;XM_005397778;XM_005397779 XP_005397835;XP_005397836 MODEL 8701743 protein-coding LOC102015473 ATP-dependent zinc metalloprotease YME1L1 NW_004955826 3824 15193 - 102015473 AGCD01078430;AGCD01078431;GBDF01051276;XM_005415123;XM_005415125;XM_013510198 XP_005415180;XP_005415182;XP_013365652 MODEL 8802923 pseudo LOC102011311 methionine aminopeptidase 2 pseudogene NW_004955416 12398435 12418557 - 102011311 AGCD01017205;AGCD01017206 MODEL 8817269 pseudo LOC102008251 60S ribosomal protein L17 pseudogene NW_004955523 12998 13552 + 102008251 AGCD01068430 MODEL 8939243 protein-coding Rbp4 retinol binding protein 4 ENCODES a protein that exhibits molecular carrier activity (ortholog); protein-containing complex binding (ortholog); retinol binding (ortholog); INVOLVED IN cardiac muscle tissue development (ortholog); detection of light stimulus involved in visual perception (ortholog); embryonic organ morphogenesis (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); acute pyelonephritis (ortholog); Alcoholic Liver Diseases (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog); protein-containing complex (ortholog) NW_004955507 112342 120050 - 102029207 AGCD01065462;AGCD01065463;GBBH01117602;GBCE01001890;XM_013506237 XP_013361691 MODEL 8885594 ncrna LOC102010513 uncharacterized LOC102010513 NW_004955518 2093768 2169658 - 102010513 AGCD01067771;GBDI01245852;XR_001231842;XR_001231843;XR_001231844;XR_001231845;XR_001231846;XR_001231847;XR_001231848;XR_264567 MODEL 8957084 protein-coding LOC102003611 BPI fold-containing family C protein-like NW_004957015 28 1202 - 102003611 AGCD01080411;XM_005415219 XP_005415276 MODEL 9066505 protein-coding Trim27 tripartite motif containing 27 ENCODES a protein that exhibits identical protein binding (ortholog); SUMO transferase activity (ortholog); transcription coactivator activity (ortholog); INVOLVED IN Arp2/3 complex-mediated actin nucleation (ortholog); innate immune response (ortholog); negative regulation of adaptive immune response (ortholog); ASSOCIATED WITH megacolon (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); fibrillar center (ortholog) NW_004955465 13891001 13902767 - 102008834 AGCD01050633;GBCE01076355;GBCE01076358;XM_013521856 XP_013377310 MODEL 10156556 protein-coding Ptma prothymosin alpha ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); histone binding (ortholog); histone chaperone activity (ortholog); INVOLVED IN chromatin organization (ortholog); negative regulation of apoptotic process (ortholog); positive regulation of NF-kappaB transcription factor activity (ortholog); ASSOCIATED WITH adenoma (ortholog); Joubert syndrome 22 (ortholog); Lung Neoplasms (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955453 4036503 4037788 - 106149798 AGCD01044672;GBBH01002333;GBDF01000055;XM_013519995 XP_013375449 MODEL 8989694 protein-coding Snai2 snail family transcriptional repressor 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN cartilage morphogenesis (ortholog); cell migration involved in endocardial cushion formation (ortholog); cellular response to epidermal growth factor stimulus (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); calcinosis (ortholog); Esophageal Neoplasms (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955454 8759860 8763603 - 102025653 AGCD01045326;GBDJ01234105;XM_005396046 XP_005396103 MODEL 8909756 protein-coding Sema7a semaphorin 7A (JohnMiltonHagen blood group) ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN axon extension (ortholog); integrin-mediated signaling pathway (ortholog); neuron projection development (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); Brugada syndrome 8 (ortholog); FOUND IN external side of plasma membrane (ortholog); GABA-ergic synapse (ortholog); presynapse (ortholog) NW_004955450 3401732 3424547 + 102014629 AGCD01042432;AGCD01042433;AGCD01042434;GBBH01193875;GBDK01084141;XM_005393558;XM_013519016 XP_005393615;XP_013374470 MODEL 8841602 ncrna LOC102018544 uncharacterized LOC102018544 NW_004955577 464682 467971 + 102018544 AGCD01075396;GBCQ01030476;XR_265080 MODEL 39133558 snorna U3 Small nucleolar RNA U3 8739493 protein-coding Rbp5 retinol binding protein 5 ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); Klippel-Feil syndrome 3 (ortholog) NW_004955413 4682477 4689949 - 102012622 AGCD01013624;GBDF01211758;XM_005378859 XP_005378916 MODEL 8909667 protein-coding Thnsl2 threonine synthase like 2 ENCODES a protein that exhibits pyridoxal phosphate binding (ortholog); serine binding (ortholog); INVOLVED IN 2-oxobutyrate biosynthetic process (ortholog); dephosphorylation (ortholog); serine family amino acid catabolic process (ortholog) NW_004955424 526967 543603 - 102012450 AGCD01024178;GBDK01318952;XM_005385380 XP_005385437 MODEL 8855044 trna trnG(tcc) tRNA-Gly MT 9396 9464 + 15822209 8737485 protein-coding Wars1 tryptophanyl-tRNA synthetase 1 ENCODES a protein that exhibits kinase inhibitor activity (ortholog); protein domain specific binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN negative regulation of protein kinase activity (ortholog); positive regulation of gene expression (ortholog); positive regulation of protein-containing complex assembly (ortholog); PARTICIPATES IN tryptophan metabolic pathway; ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 9 (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955438 21414878 21445417 - 102006711 AGCD01035542;AGCD01035543;AGCD01035544;GBCE01053817;XM_005390433;XM_005390434;XM_005390436;XM_013517225 XP_005390490;XP_005390491;XP_005390493;XP_013372679 MODEL 8740934 ncrna LOC102010158 uncharacterized LOC102010158 NW_004955417 26308543 26333124 + 102010158 AGCD01018505;GBBH01097094;XR_001233384;XR_001233385 MODEL 8990272 protein-coding Peak1 pseudopodium enriched atypical kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); non-membrane spanning protein tyrosine kinase activity (ortholog); INVOLVED IN cell migration (ortholog); focal adhesion assembly (ortholog); protein autophosphorylation (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); schizophrenia (ortholog); FOUND IN actin cytoskeleton (ortholog); cytosol (ortholog); focal adhesion (ortholog) NW_004955450 2000823 2285023 - 102021066 AGCD01042375;AGCD01042376;AGCD01042377;AGCD01042378;AGCD01042379;AGCD01042380;AGCD01042381;GBDK01237637;XM_005393484;XM_005393487;XM_005393488;XM_013518878;XM_013518879;XM_013518880;XM_013518881;XM_013518882 XP_005393541;XP_005393544;XP_005393545;XP_013374332;XP_013374333;XP_013374334;XP_013374335;XP_013374336 MODEL 8739383 ncrna LOC102007895 uncharacterized LOC102007895 NW_004955482 3978633 3990270 + 102007895 AGCD01057276;AGCD01057277;GBDI01191861;XR_263829 MODEL 9052216 protein-coding Snrpc small nuclear ribonucleoprotein polypeptide C ENCODES a protein that exhibits protein homodimerization activity (ortholog); single-stranded RNA binding (ortholog); U1 snRNA binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH connective tissue disease (ortholog); mixed connective tissue disease (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN Cajal body (ortholog); nucleoplasm (ortholog); spliceosomal complex (ortholog) NW_004955437 2770251 2830871 + 102019321 AGCD01034286;AGCD01034287;AGCD01034288;GBDF01144864;XM_013516970;XM_013516971 XP_013372424;XP_013372425 MODEL 8832261 protein-coding Phkb phosphorylase kinase regulatory subunit beta INVOLVED IN glucose homeostasis (ortholog); positive regulation of glycogen catabolic process (ortholog); protein phosphorylation (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH genetic disease (ortholog); glycogen storage disease IXB (ortholog); FOUND IN phosphorylase kinase complex (ortholog) NW_004955474 7599657 7801083 - 102010476 AGCD01054526;AGCD01054527;AGCD01054528;AGCD01054529;AGCD01054530;GBCB01007397;XM_005401407;XM_005401408;XM_013502733;XM_013502734;XM_013502735 XP_005401464;XP_005401465;XP_013358187;XP_013358188;XP_013358189 MODEL 8882373 protein-coding Pcmtd1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 ENCODES a protein that exhibits S-adenosylmethionine-dependent methyltransferase activity (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog) NW_004955454 11445684 11481076 - 102027042 AGCD01045388;GBBH01090284;XM_005396051 XP_005396108 MODEL 8773969 ncrna LOC102011721 uncharacterized LOC102011721 NW_004955403 45969900 45972939 - 102011721 AGCD01002845;XR_259243 MODEL 8867970 protein-coding Tor1b torsin family 1 member B ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); identical protein binding (ortholog); INVOLVED IN endoplasmic reticulum organization (ortholog); nuclear membrane organization (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog) NW_004955513 23118 29401 + 102012462 AGCD01066810;GBDJ01227651;XM_005408330 XP_005408387 MODEL 8991684 protein-coding Slco3a1 solute carrier organic anion transporter family member 3A1 ENCODES a protein that exhibits organic anion transmembrane transporter activity (ortholog); prostaglandin transmembrane transporter activity (ortholog); INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of MAPK cascade (ortholog); prostaglandin transport (ortholog); FOUND IN basal plasma membrane (ortholog); plasma membrane (ortholog) NW_004955416 20186940 20483844 + 102016156 AGCD01017451;AGCD01017452;AGCD01017453;AGCD01017454;GBCB01043430;GBDI01297533;XM_005381597 XP_005381654 MODEL 8708504 protein-coding LOC102015474 CSC1-like protein 1 NW_004956265 355 5982 - 102015474 AGCD01079347;GBBH01033680;GBDK01145453;XM_005415187 XP_005415244 MODEL 8882966 protein-coding Elovl5 ELOVL fatty acid elongase 5 ENCODES a protein that exhibits fatty acid elongase activity (ortholog); INVOLVED IN alpha-linolenic acid metabolic process (ortholog); fatty acid biosynthetic process (ortholog); fatty acid derivative biosynthetic process (ortholog); PARTICIPATES IN alpha-linolenic acid metabolic pathway; linoleic acid metabolic pathway; ASSOCIATED WITH atherosclerosis (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN dendritic tree (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955411 2747232 2812544 + 102011288 AGCD01011516;AGCD01011517;AGCD01011518;GBDF01007036;XM_005377606 XP_005377663 MODEL 9057926 ncrna LOC102010517 uncharacterized LOC102010517 NW_004955530 2532397 2639683 + 102010517 AGCD01069921;AGCD01069922;AGCD01069923;AGCD01069924;AGCD01069925;AGCD01069926;AGCD01069927;GBDF01160127;XR_001231996;XR_001231997;XR_001231998;XR_264710 MODEL 10222051 ncrna LOC106149806 uncharacterized LOC106149806 NW_004955454 2019698 2020207 - 106149806 AGCD01045000;XR_001236218 MODEL 8998695 protein-coding Slc38a10 solute carrier family 38 member 10 INVOLVED IN bone development (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955506 1724426 1767582 + 102006935 AGCD01065273;GBBH01032038;XM_005407280;XM_005407281;XM_005407282;XM_005407283;XM_005407284;XM_005407285;XM_013506030 XP_005407337;XP_005407338;XP_005407339;XP_005407340;XP_005407341;XP_005407342;XP_013361484 MODEL 9046428 protein-coding Trim28 tripartite motif containing 28 ENCODES a protein that exhibits chromatin binding (ortholog); chromo shadow domain binding (ortholog); DNA binding (ortholog); INVOLVED IN convergent extension involved in axis elongation (ortholog); DNA methylation-dependent constitutive heterochromatin formation (ortholog); DNA repair (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH atherosclerosis (ortholog); Colorectal Neoplasms (ortholog); nephroblastoma (ortholog); FOUND IN chromatin (ortholog); euchromatin (ortholog); heterochromatin (ortholog) NW_004955584 1148903 1156001 + 102030140 AGCD01075981;AGCD01075982;GBBH01031424;GBCB01020438;XM_013509851 XP_013365305 MODEL 39133561 snorna U3 Small nucleolar RNA U3 8901371 protein-coding Oscp1 organic solute carrier partner 1 ENCODES a protein that exhibits transmembrane transporter activity (ortholog); INVOLVED IN xenobiotic detoxification by transmembrane export across the plasma membrane (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN basal plasma membrane (ortholog); cytoplasm (ortholog) NW_004955452 14366242 14398181 - 102005991 AGCD01044466;GBDK01184809;XM_005395194 XP_005395251 MODEL 9013323 ncrna LOC102010922 uncharacterized LOC102010922 NW_004955425 2114106 2208490 - 102010922 AGCD01025251;AGCD01025252;AGCD01025253;AGCD01025254;AGCD01025255;GBDF01075868;XR_001234279;XR_001234280;XR_001234281;XR_001234282;XR_001234283 MODEL 8838051 ncrna LOC102009397 uncharacterized LOC102009397 NW_004955423 12414062 12469348 + 102009397 AGCD01023718;GBDK01419002;XR_260967 MODEL 8920424 protein-coding Pam16 presequence translocase associated motor 16 INVOLVED IN DNA biosynthetic process (ortholog); negative regulation of apoptotic DNA fragmentation (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); Kohlschutter-Tonz syndrome (ortholog); FOUND IN cytoplasm (ortholog); matrix side of mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog) NW_004955442 13087082 13097048 + 102012808 AGCD01037757;GBDF01010977;XM_005391299;XM_005391300;XM_005391301 XP_005391356;XP_005391357;XP_005391358 MODEL 9024960 protein-coding Peak3 PEAK family member 3 INVOLVED IN regulation of actin cytoskeleton organization (ortholog); regulation of cell shape (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog) NW_004955495 5866204 5869808 + 102013844 AGCD01062038;AGCD01062039;GBBH01110872;GBDK01304804;XM_013505238 XP_013360692 MODEL 8948583 protein-coding Prkar2a protein kinase cAMP-dependent type II regulatory subunit alpha ENCODES a protein that exhibits beta-2 adrenergic receptor binding (ortholog); cAMP binding (ortholog); cAMP-dependent protein kinase inhibitor activity (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); negative regulation of cAMP-dependent protein kinase activity (ortholog); negative regulation of cAMP/PKA signal transduction (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); congestive heart failure (ortholog); Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); FOUND IN axoneme (ortholog); cAMP-dependent protein kinase complex (ortholog); centrosome (ortholog) NW_004955532 827112 896487 - 102006281 AGCD01070155;AGCD01070156;AGCD01070157;GBDF01007082;XM_005410362 XP_005410419 MODEL 10082218 ncrna LOC106146979 uncharacterized LOC106146979 NW_004955510 3888504 3918505 - 106146979 AGCD01066252;GBDF01210446;XR_001231668 MODEL 8916367 protein-coding Rras2 RAS related 2 ENCODES a protein that exhibits GTPase activity (ortholog); INVOLVED IN cell migration (ortholog); positive regulation of Schwann cell migration (ortholog); Ras protein signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Neoplasms (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN plasma membrane (ortholog) NW_004955414 29482502 29546102 - 102022808 AGCD01015705;AGCD01015706;GBCE01134839;GBDK01194561;XM_005415344 XP_005415401 MODEL 9057667 protein-coding Phkg1 phosphorylase kinase catalytic subunit gamma 1 ENCODES a protein that exhibits ATP binding (ortholog); enzyme binding (ortholog); phosphorylase kinase activity (ortholog); INVOLVED IN glycogen metabolic process (ortholog); protein phosphorylation (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH autistic disorder (ortholog); pleomorphic xanthoastrocytoma (ortholog); PSPH deficiency (ortholog); FOUND IN phosphorylase kinase complex (ortholog) NW_004955456 8251789 8259205 - 102003092 AGCD01046465;GBCB01003996;XM_005396702 XP_005396759 MODEL 39133743 snorna SNORD115 Small nucleolar RNA SNORD115 8948111 protein-coding Slc25a1 solute carrier family 25 member 1 ENCODES a protein that exhibits citrate secondary active transmembrane transporter activity (ortholog); tricarboxylic acid transmembrane transporter activity (ortholog); INVOLVED IN mitochondrial citrate transmembrane transport (ortholog); negative regulation of ferroptosis (ortholog); ASSOCIATED WITH 2-hydroxyglutaric aciduria (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955442 18804319 18807353 + 102011484 AGCD01038020;GBCE01076067;GBDJ01089948;XM_005391786 XP_005391843 MODEL 8876439 protein-coding LOC102008252 cartilage oligomeric matrix protein NW_004955524 2879519 2884305 + 102008252 AGCD01068843;GBDI01053407;GBDK01101224;XM_013507182 XP_013362636 MODEL 8784296 ncrna LOC102011725 uncharacterized LOC102011725 NW_004955404 11149721 11163056 - 102011725 AGCD01003414;AGCD01003415;GBDF01148811;XR_259301 MODEL 8861832 protein-coding Rgs19 regulator of G protein signaling 19 ENCODES a protein that exhibits actin binding (ortholog); G-protein alpha-subunit binding (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); chemical synaptic transmission (ortholog); endothelial cell migration (ortholog); FOUND IN brush border (ortholog); clathrin-coated vesicle (ortholog); cytoplasm (ortholog) NW_004955528 183067 185703 + 102022632 AGCD01069514;GBCE01116836;GBDJ01317429;XM_013507518 XP_013362972 MODEL 8977210 protein-coding LOC102024182 trafficking protein particle complex subunit 2-like NW_004955405 29926824 29930245 - 102024182 AGCD01005262;GBDF01119098;XM_005374461;XR_259410 XP_005374518 MODEL 8939669 pseudo LOC102018549 14-3-3 protein sigma-like NW_004955451 4012131 4013628 + 102018549 AGCD01043087 MODEL 8901122 protein-coding Tor2a torsin family 2 member A ENCODES a protein that exhibits hormone activity (ortholog); identical protein binding (ortholog); INVOLVED IN cell-cell signaling (ortholog); positive regulation of calcium ion transmembrane transport (ortholog); positive regulation of cAMP-mediated signaling (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Iu (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog); extracellular region (ortholog) NW_004955419 922901 926624 + 102029295 AGCD01019623;GBDF01251618;XM_005382421 XP_005382478 MODEL 8962066 protein-coding Polr1d RNA polymerase I and III subunit D PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH Animal Disease Models (ortholog); genetic disease (ortholog); Hearing Loss (ortholog); FOUND IN RNA polymerase I complex (ortholog); RNA polymerase III complex (ortholog) NW_004955497 7029556 7030128 + 102015417 AGCD01062655;GBCE01074470;GBDK01141758;XM_005406376 XP_005406433 MODEL 8878480 ncrna LOC102005341 uncharacterized LOC102005341 NW_004955408 8988844 8997598 - 102005341 AGCD01008230;GBDF01277633;XR_259674 MODEL 10364400 ncrna LOC106149807 uncharacterized LOC106149807 NW_004955454 1476866 1481796 - 106149807 AGCD01044970;XR_001236219 MODEL 9026268 protein-coding Elovl6 ELOVL fatty acid elongase 6 ENCODES a protein that exhibits acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); fatty acid elongase activity (ortholog); INVOLVED IN fatty acid elongation (ortholog); fatty acid elongation, monounsaturated fatty acid (ortholog); fatty acid elongation, saturated fatty acid (ortholog); ASSOCIATED WITH congestive heart failure (ortholog); obesity (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); fatty acid elongase complex (ortholog) NW_004955496 179634 301908 + 102022717 AGCD01062223;AGCD01062224;AGCD01062225;GBCQ01134913;XM_005406181;XM_005406182;XM_013505419 XP_005406238;XP_005406239;XP_013360873 MODEL 8983600 trna trnH(gtg) tRNA-His MT 11549 11617 + 15822212 9065587 protein-coding LOC102006400 galactoside 2-alpha-L-fucosyltransferase 2-like NW_004955559 1877285 1894905 - 102006400 AGCD01073677;AGCD01073678;GBDF01145381;XM_005412939 XP_005412996 MODEL 8897770 protein-coding Rbpj recombination signal binding protein for immunoglobulin kappa J region ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN angiogenesis (ortholog); aortic valve development (ortholog); arterial endothelial cell fate commitment (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH Adams-Oliver syndrome (ortholog); Adams-Oliver Syndrome 3 (ortholog); aortic valve disease (ortholog); FOUND IN cytoplasm (ortholog); MAML1-RBP-Jkappa- ICN1 complex (ortholog); nucleolus (ortholog) NW_004955443 18783061 19029441 - 102017716 AGCD01038610;AGCD01038611;AGCD01038612;AGCD01038613;AGCD01038614;AGCD01038615;AGCD01038616;GBCQ01095808;XM_005392029;XM_005392030;XM_013518082;XM_013518083;XM_013518084;XM_013518085 XP_005392086;XP_005392087;XP_013373536;XP_013373537;XP_013373538;XP_013373539 MODEL 8790255 protein-coding Tor3a torsin family 3 member A ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog) NW_004955406 18408095 18422098 + 102028377 AGCD01006034;AGCD01006035;GBCB01056537;XM_005374944;XM_013521135 XP_005375001;XP_013376589 MODEL 8720398 protein-coding LOC102007896 olfactory receptor 1J1-like NW_004955419 5455988 5456929 + 102007896 AGCD01019810;XM_005382528 XP_005382585 MODEL 9064073 pseudo LOC102023193 phosducin-like protein 3 pseudogene NW_004955534 780697 781415 - 102023193 AGCD01070470 MODEL 8925791 protein-coding Spsb4 splA/ryanodine receptor domain and SOCS box containing 4 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN positive regulation of protein polyubiquitination (ortholog); protein ubiquitination (ortholog); regulation of circadian rhythm (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog) NW_004955508 4539531 4615439 - 102022520 AGCD01065874;AGCD01065875;GBDJ01092850;XM_005407774;XM_005407775 XP_005407831;XP_005407832 MODEL 8716690 protein-coding LOC102011313 uncharacterized LOC102011313 NW_004955417 26374063 26401589 - 102011313 AGCD01018507;AGCD01018508;AGCD01018509;GBBH01003039;XM_005381923;XM_013512715;XM_013512716;XM_013512717;XM_013512718;XM_013512719;XM_013512720;XM_013512721;XM_013512722;XM_013512723;XM_013512724;XM_013512725;XM_013512726;XM_013512727;XM_013512728;XM_013512729;XM_013512730;XM_013512731;XM_013512732;XM_013512734;XR_001233417;XR_001233418 XP_005381980;XP_013368169;XP_013368170;XP_013368171;XP_013368172;XP_013368173;XP_013368174;XP_013368175;XP_013368176;XP_013368177;XP_013368178;XP_013368179;XP_013368180;XP_013368181;XP_013368182;XP_013368183;XP_013368184;XP_013368185;XP_013368186;XP_013368188 MODEL 8747424 pseudo LOC102003613 centrosomal protein of 57 kDa pseudogene NW_004955403 17238602 17239548 - 102003613 AGCD01002072 MODEL 8772433 protein-coding Oser1 oxidative stress responsive serine rich 1 INVOLVED IN cellular response to hydrogen peroxide (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN nucleus (ortholog) NW_004955445 13097438 13111825 + 102022754 AGCD01039767;GBDK01137585;XM_005392486;XM_005392487;XM_005392488;XM_013518284;XM_013518285 XP_005392543;XP_005392544;XP_005392545;XP_013373738;XP_013373739 MODEL 8759222 pseudo LOC102017400 dnaJ homolog subfamily B member 6-like NW_004955446 3345256 3346492 + 102017400 AGCD01040010 MODEL 9000566 protein-coding Ptms parathymosin ENCODES a protein that exhibits zinc ion binding (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); peroxisome biogenesis disorder 2B (ortholog) NW_004955413 4376955 4378253 + 102029065 AGCD01013612;GBCQ01007684;GBDJ01018919;XM_013511349 XP_013366803 MODEL 10182833 protein-coding LOC106146980 uncharacterized LOC106146980 NW_004955510 436710 439617 - 106146980 AGCD01066148;GBDF01193278;GBDK01378592;XM_013506325 XP_013361779 MODEL 8866090 protein-coding Rab13 RAB13, member RAS oncogene family ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); protein kinase A catalytic subunit binding (ortholog); INVOLVED IN bicellular tight junction assembly (ortholog); cellular response to insulin stimulus (ortholog); cortical actin cytoskeleton organization (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); dyschromatosis symmetrica hereditaria (ortholog); GAND syndrome (ortholog); FOUND IN bicellular tight junction (ortholog); cell-cell junction (ortholog); cytoplasmic vesicle (ortholog) NW_004955545 590021 594191 - 102026260 AGCD01071802;GBDJ01137960;XM_005411465;XM_013508365 XP_005411522;XP_013363819 MODEL 8941545 ncrna LOC102008254 uncharacterized LOC102008254 NW_004955436 16825530 16828910 + 102008254 AGCD01033933;GBDF01144258;XR_261796 MODEL 8998088 protein-coding Nav3 neuron navigator 3 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN negative regulation of cell migration (ortholog); negative regulation of interleukin-2 production (ortholog); negative regulation of microtubule depolymerization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Cardiac Arrhythmias (ortholog); opiate dependence (ortholog); FOUND IN microtubule end (ortholog); nuclear envelope (ortholog); nucleus (ortholog) NW_004955405 16428643 17213253 + 102015918 AGCD01004973;AGCD01004974;AGCD01004975;AGCD01004976;AGCD01004977;AGCD01004978;AGCD01004979;AGCD01004980;AGCD01004981;AGCD01004982;AGCD01004983;AGCD01004984;AGCD01004985;AGCD01004986;AGCD01004987;GBCE01167360;XM_005374353;XM_005374354;XM_005374355;XM_013517801;XM_013517805;XM_013517808;XM_013517814 XP_005374410;XP_005374411;XP_005374412;XP_013373255;XP_013373259;XP_013373262;XP_013373268 MODEL 8868311 protein-coding Senp1 SUMO specific peptidase 1 ENCODES a protein that exhibits deSUMOylase activity (ortholog); SUMO-specific endopeptidase activity (ortholog); INVOLVED IN negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH arteriosclerosis (ortholog); Neointima (ortholog); Primary Graft Dysfunction (ortholog); FOUND IN focal adhesion (ortholog); glutamatergic synapse (ortholog); nuclear membrane (ortholog) NW_004955500 6924445 6978482 - 102025139 AGCD01063895;GBCE01013150;GBDF01049796;XM_005406636 XP_005406693 MODEL 8713648 protein-coding Plk1 polo like kinase 1 ENCODES a protein that exhibits anaphase-promoting complex binding (ortholog); ATP binding (ortholog); identical protein binding (ortholog); INVOLVED IN centrosome cycle (ortholog); double-strand break repair (ortholog); double-strand break repair via alternative nonhomologous end joining (ortholog); ASSOCIATED WITH Breast Cancer, Familial (ortholog); breast carcinoma (ortholog); COVID-19 (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955493 2206353 2217231 + 102023160 AGCD01060935;GBCQ01178810;XM_005405103 XP_005405160 MODEL 8746767 protein-coding Leng9 leukocyte receptor cluster member 9 ASSOCIATED WITH myoepithelioma (ortholog) NW_004955567 1551379 1558261 - 102027020 AGCD01074481;AGCD01074482;GBCE01142248;GBDJ01073632;XM_005413414 XP_005413471 MODEL 8737753 protein-coding Piwil4 piwi like RNA-mediated gene silencing 4 ENCODES a protein that exhibits molecular adaptor activity (ortholog); piRNA binding (ortholog); RNA endonuclease activity (ortholog); INVOLVED IN epithelial structure maintenance (ortholog); piRNA processing (ortholog); piRNA-mediated gene silencing by mRNA destabilization (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); intellectual disability (ortholog); oligospermia (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955605 331633 398528 - 102025862 AGCD01076941;AGCD01076942;AGCD01076943;AGCD01076944;GBCB01100222;GBCQ01059446;XM_013510100 XP_013365554 MODEL 8861374 pseudo LOC102006775 tRNA methyltransferase 10 homolog A pseudogene NW_004955418 23030539 23031447 + 102006775 AGCD01019297 MODEL 9053487 protein-coding Wars2 tryptophanyl tRNA synthetase 2, mitochondrial ENCODES a protein that exhibits tryptophan-tRNA ligase activity (ortholog); INVOLVED IN positive regulation of angiogenesis (ortholog); vasculogenesis (ortholog); PARTICIPATES IN tryptophan metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); Hajdu-Cheney syndrome (ortholog); Mitochondrial Neurodevelopmental Disorder, with Abnormal Movements and Lactic Acidosis, with or without Seizures (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955435 22032230 22115138 - 102014082 AGCD01033489;AGCD01033490;AGCD01033491;GBCB01110388;XM_005389073;XM_005389075 XP_005389130;XP_005389132 MODEL 9055652 pseudo LOC102010929 transcriptional repressor protein YY1-like NW_004955429 4787838 4789119 - 102010929 AGCD01028496 MODEL 8844786 pseudo LOC102009401 CGG triplet repeat-binding protein 1-like NW_004955503 3186612 3188685 + 102009401 AGCD01064619 MODEL 8703988 protein-coding Rangap1 Ran GTPase activating protein 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); RNA binding (ortholog); small GTPase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); cellular response to peptide hormone stimulus (ortholog); cellular response to vasopressin (ortholog); PARTICIPATES IN CRM1 export pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Carotid Artery Injuries (ortholog); common variable immunodeficiency 4 (ortholog); FOUND IN aggresome (ortholog); axon cytoplasm (ortholog); cytoplasm (ortholog) NW_004955413 26869487 26894192 - 102016691 AGCD01014485;GBDJ01275353;XM_005379343;XM_005379344;XM_013511354 XP_005379400;XP_005379401;XP_013366808 MODEL 9029471 pseudo LOC102012518 mortality factor 4-like protein 2 NW_004955466 3112875 3113758 - 102012518 AGCD01050786 MODEL 8889468 protein-coding LOC102006403 cytochrome P450 3A9-like NW_004955573 1105990 1253925 - 102006403 AGCD01075020;AGCD01075021;AGCD01075022;AGCD01075023;AGCD01075024;AGCD01075025;AGCD01075026;AGCD01075027;AGCD01075028;AGCD01075029;AGCD01075030;AGCD01075031;AGCD01075032;AGCD01075033;AGCD01075034;GBDJ01045815;XM_005413765;XM_005413766;XM_005413767;XM_005413768 XP_005413822;XP_005413823;XP_005413824;XP_005413825 MODEL 9043208 ncrna LOC102015483 uncharacterized LOC102015483 NW_004955409 5938745 5953096 + 102015483 AGCD01009328;AGCD01009329;GBDK01220228;XR_001232610 MODEL 8976325 protein-coding Prtg protogenin ENCODES a protein that exhibits identical protein binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN negative regulation of neurogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN plasma membrane (ortholog) NW_004955409 309885 405667 + 102019893 AGCD01009142;AGCD01009143;AGCD01009144;GBCE01179538;GBDF01074670;XM_013510014 XP_013365468 MODEL 8934322 protein-coding Slco4a1 solute carrier organic anion transporter family member 4A1 ENCODES a protein that exhibits organic anion transmembrane transporter activity (ortholog); prostaglandin transmembrane transporter activity (ortholog); thyroid hormone transmembrane transporter activity (ortholog); INVOLVED IN thyroid hormone metabolic process (ortholog); PARTICIPATES IN multispecific organic anion transporter mediated transport pathway; ASSOCIATED WITH COVID-19 (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 33 (ortholog) NW_004955528 1436058 1449178 - 102024843 AGCD01069563;GBBH01201288;GBCQ01062658;XM_013507513 XP_013362967 MODEL 8958840 ncrna LOC102023194 uncharacterized LOC102023194 NW_004955538 2857005 2863163 + 102023194 AGCD01071143;GBDF01016111;XR_264805 MODEL 39131974 snorna SNORD116 Small nucleolar RNA SNORD116 8821153 protein-coding LOC102010524 protein S100-A6-like NW_004955545 107981 108711 - 102010524 AGCD01071767;XM_005411404 XP_005411461 MODEL 9044391 pseudo LOC102010159 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4-like NW_004955417 3869752 3882123 - 102010159 AGCD01017930;AGCD01017931 MODEL 9031341 ncrna LOC102018551 uncharacterized LOC102018551 NW_004955451 11692981 11705179 - 102018551 AGCD01043363;GBDF01220707;XR_001235941;XR_001235942;XR_262593 MODEL 39133564 snorna U3 Small nucleolar RNA U3 8726626 protein-coding Ptn pleiotrophin ENCODES a protein that exhibits carbohydrate binding (ortholog); chondroitin sulfate binding (ortholog); chondroitin sulfate proteoglycan binding (ortholog); INVOLVED IN bone mineralization (ortholog); cellular response to D-galactosamine (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH adrenal carcinoma (ortholog); Animal Mammary Neoplasms (ortholog); Body Weight (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); endoplasmic reticulum (ortholog) NW_004955494 5580264 5681848 + 102006927 AGCD01061522;AGCD01061523;GBCE01001843;XM_013505031;XM_013505032 XP_013360485;XP_013360486 MODEL 8711559 ncrna LOC102018904 uncharacterized LOC102018904 NW_004955411 12608628 12618065 + 102018904 AGCD01011851;GBDF01241604;XR_259934 MODEL 8798355 protein-coding Trim29 tripartite motif containing 29 ENCODES a protein that exhibits identical protein binding (ortholog); p53 binding (ortholog); INVOLVED IN negative regulation of protein localization to nucleus (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN cytoplasm (ortholog) NW_004955412 21134076 21158982 - 102010139 AGCD01013018;GBCE01037365;XM_005378344;XM_013511251 XP_005378401;XP_013366705 MODEL 8931053 protein-coding Polr1e RNA polymerase I subunit E ENCODES a protein that exhibits RNA polymerase I general transcription initiation factor binding (ortholog); INVOLVED IN nucleolar large rRNA transcription by RNA polymerase I (ortholog); RNA polymerase I preinitiation complex assembly (ortholog); transcription initiation at RNA polymerase I promoter (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ortholog); FOUND IN fibrillar center (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955419 28970982 28983862 - 102006779 AGCD01020481;GBDF01224045;XM_005382878 XP_005382935 MODEL 8892476 protein-coding LOC102021499 zinc finger protein 39-like NW_004955581 3067 74785 - 102021499 AGCD01075654;AGCD01075655;AGCD01075656;GBDI01011076;XM_013509735 XP_013365189 MODEL 8909796 pseudo LOC102018905 60S ribosomal protein L7-like 1 pseudogene NW_004955465 3670775 3671551 - 102018905 AGCD01050388 MODEL 8967985 protein-coding Tor4a torsin family 4 member A ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog) NW_004955513 5263299 5265622 + 102003049 AGCD01066964;AGCD01066965;GBBH01207327;GBDI01262912;XM_013506740 XP_013362194 MODEL 8996395 pseudo LOC102009404 sorting nexin-6 pseudogene NW_004955427 21883319 21885923 - 102009404 AGCD01027461 MODEL 8961440 protein-coding Prkar2b protein kinase cAMP-dependent type II regulatory subunit beta ENCODES a protein that exhibits cAMP binding (ortholog); cAMP-dependent protein kinase inhibitor activity (ortholog); cAMP-dependent protein kinase regulator activity (ortholog); INVOLVED IN fatty acid metabolic process (ortholog); learning (ortholog); modulation of chemical synaptic transmission (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH congestive heart failure (ortholog); granulosa cell tumor (ortholog); obesity (ortholog); FOUND IN cAMP-dependent protein kinase complex (ortholog); centrosome (ortholog); ciliary base (ortholog) NW_004955410 11529530 11620085 + 102017752 AGCD01010826;AGCD01010827;AGCD01010828;AGCD01010829;GBCQ01036114;XM_013510492 XP_013365946 MODEL 8797676 protein-coding Pear1 platelet endothelial aggregation receptor 1 ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); platelet aggregation (ortholog); positive regulation of platelet activation (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN lamellipodium (ortholog); phagocytic cup (ortholog); plasma membrane (ortholog) NW_004955545 2958334 2977146 + 102014178 AGCD01071930;GBDI01177513;XM_005411722;XM_013508217;XM_013508218;XM_013508219;XM_013508220;XM_013508221;XM_013508222;XM_013508223 XP_005411779;XP_013363671;XP_013363672;XP_013363673;XP_013363674;XP_013363675;XP_013363676;XP_013363677 MODEL 8802460 protein-coding Osgep O-sialoglycoprotein endopeptidase ENCODES a protein that exhibits N(6)-L-threonylcarbamoyladenine synthase activity (ortholog); INVOLVED IN tRNA modification (ortholog); tRNA threonylcarbamoyladenosine modification (ortholog); ASSOCIATED WITH Galloway-Mowat syndrome (ortholog); Galloway-Mowat syndrome 3 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); EKC/KEOPS complex (ortholog) NW_004955550 1266191 1273093 - 102024955 AGCD01072559;GBDI01128287;XM_005412061 XP_005412118 MODEL 8871233 pseudo LOC102011727 GTP:AMP phosphotransferase AK3, mitochondrial-like NW_004955404 141224 156690 - 102011727 AGCD01003197 MODEL 8956642 protein-coding Slc38a11 solute carrier family 38 member 11 ASSOCIATED WITH epilepsy (ortholog) NW_004955449 9126231 9176698 + 102014098 AGCD01042037;GBDK01335030;XM_005393302;XM_005393303 XP_005393359;XP_005393360 MODEL 10255976 protein-coding LOC106146981 uncharacterized LOC106146981 NW_004955510 5953614 5957245 - 106146981 AGCD01066297;GBDJ01004153;XM_013506327;XM_013506328 XP_013361781;XP_013361782 MODEL 39131958 snorna SNORD116 Small nucleolar RNA SNORD116 8884400 protein-coding Snrpd1 small nuclear ribonucleoprotein D1 polypeptide ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH connective tissue disease (ortholog); intellectual disability (ortholog); nasopharynx carcinoma (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955402 10283970 10294869 + 102028039 AGCD01000256;AGCD01000257;AGCD01000258;GBDK01005303;XM_005372689;XM_005372690 XP_005372746;XP_005372747 MODEL 10357897 ncrna LOC106149808 uncharacterized LOC106149808 NW_004955454 15599162 15630344 - 106149808 AGCD01045495;GBDJ01155267;XR_001236220;XR_001236221 MODEL 8942198 protein-coding LOC102008255 steroid 21-hydroxylase ENCODES a protein that exhibits 17-hydroxyprogesterone 21-hydroxylase activity (ortholog); heme binding (ortholog); progesterone 21-hydroxylase activity (ortholog); INVOLVED IN steroid biosynthetic process (ortholog); steroid metabolic process (ortholog); PARTICIPATES IN 11-beta-hydroxylase deficiency pathway; 17-alpha-hydroxylase deficiency pathway; 21-alpha-hydroxylase deficiency pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); congenital adrenal hyperplasia (ortholog); Congenital Adrenal Hyperplasia due to 21 Hydroxylase Deficiency (ortholog) NW_004955437 513052 516792 + 102008255 AGCD01034140;GBCE01017755;XM_005389407 XP_005389464 MODEL 8916902 protein-coding Naxd NAD(P)HX dehydratase ENCODES a protein that exhibits ATP-dependent NAD(P)H-hydrate dehydratase activity (ortholog); INVOLVED IN metabolite repair (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); combined oxidative phosphorylation deficiency 27 (ortholog); Disease Progression (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); mitochondrion (ortholog) NW_004955404 2028560 2049638 - 102020627 AGCD01003245;AGCD01003246;AGCD01003247;GBDI01005812;XM_005374003 XP_005374060 MODEL 8855148 protein-coding Elovl7 ELOVL fatty acid elongase 7 ENCODES a protein that exhibits fatty acid elongase activity (ortholog); INVOLVED IN fatty acid elongation, polyunsaturated fatty acid (ortholog); fatty acid elongation, saturated fatty acid (ortholog); very long-chain fatty acid biosynthetic process (ortholog); ASSOCIATED WITH Cockayne syndrome A (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955446 7732291 7758842 + 102005647 AGCD01040128;AGCD01040129;GBDF01215158;XM_013518450;XM_013518451 XP_013373904;XP_013373905 MODEL 39133676 snorna U3 Small nucleolar RNA U3 8848333 protein-coding Pja1 praja ring finger ubiquitin ligase 1 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN protein catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); craniofrontonasal syndrome (ortholog); FOUND IN cytoplasm (ortholog) NW_004955475 8688467 8693010 - 102016154 AGCD01055047;GBDI01173670;XM_005401595;XM_005401596 XP_005401652;XP_005401653 MODEL 8962580 protein-coding Plk2 polo like kinase 2 ENCODES a protein that exhibits ATP-dependent protein binding (ortholog); ATPase binding (ortholog); clathrin heavy chain binding (ortholog); INVOLVED IN G1/S transition of mitotic cell cycle (ortholog); long-term synaptic depression (ortholog); long-term synaptic potentiation (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Drug-Related Side Effects and Adverse Reactions (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); chromatin (ortholog) NW_004955446 9671090 9676956 + 102008994 AGCD01040162;GBDF01005861;XM_005392671 XP_005392728 MODEL 8821022 pseudo LOC102007900 la-related protein 7-like NW_004955419 25039993 25040565 - 102007900 AGCD01020367 MODEL 8860040 protein-coding Rbpjl recombination signal binding protein for immunoglobulin kappa J region like ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); maturity-onset diabetes of the young type 1 (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955445 12017500 12029507 - 102008674 AGCD01039731;GBCE01101674;XM_005392436 XP_005392493 MODEL 10392422 ncrna LOC106149809 uncharacterized LOC106149809 NW_004955454 15428337 15459279 + 106149809 AGCD01045494;AGCD01045495;GBDJ01302881;XR_001236222 MODEL 8999496 protein-coding LOC102010931 olfactory receptor 9G4-like NW_004955511 1803413 1804351 - 102010931 AGCD01066380;XM_005407978 XP_005408035 MODEL 8701315 ncrna LOC102017401 uncharacterized LOC102017401 NW_004955447 9620021 9623327 + 102017401 AGCD01040865;GBDF01045016;XR_001235711;XR_262416;XR_262417 MODEL 8983370 protein-coding Was WASP actin nucleation promoting factor ENCODES a protein that exhibits identical protein binding (ortholog); phospholipase binding (ortholog); protein kinase binding (ortholog); INVOLVED IN actin filament polymerization (ortholog); actin filament-based movement (ortholog); actin polymerization or depolymerization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); Cytomegalovirus Infections (ortholog); FOUND IN actin filament (ortholog); cell-cell junction (ortholog); cytosol (ortholog) NW_004955543 243618 253489 + 102022858 AGCD01071569;GBBH01116435;XM_005411273 XP_005411330 MODEL 9050595 protein-coding Thoc1 THO complex 1 INVOLVED IN mRNA export from nucleus (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal dominant nonsyndromic deafness 86 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); nuclear speck (ortholog) NW_004955402 9675211 9708045 + 102018246 AGCD01000228;GBDI01007496;GBDJ01229393;XM_013519833 XP_013375287 MODEL 8742361 protein-coding Rgs2 regulator of G protein signaling 2 ENCODES a protein that exhibits adenylate cyclase inhibitor activity (ortholog); beta-tubulin binding (ortholog); G-protein alpha-subunit binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); maternal process involved in female pregnancy (ortholog); negative regulation of cardiac muscle hypertrophy (ortholog); PARTICIPATES IN acetylcholine signaling pathway via muscarinic acetylcholine receptor; angiotensin II signaling pathway via AT1 receptor; calcium signaling pathway via the calcium-sensing receptor; ASSOCIATED WITH acute myeloid leukemia (ortholog); bladder disease (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog) NW_004955406 30261757 30265389 + 102018685 AGCD01006363;GBBH01140341;XM_005375101 XP_005375158 MODEL 8978856 ncrna LOC102024185 uncharacterized LOC102024185 NW_004955453 16940401 16952753 - 102024185 AGCD01044916;GBDJ01248425;XR_001236187 MODEL 8936487 protein-coding Pja2 praja ring finger ubiquitin ligase 2 ENCODES a protein that exhibits protein kinase A catalytic subunit binding (ortholog); protein kinase A regulatory subunit binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN inflammatory response (ortholog); innate immune response (ortholog); long-term memory (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955418 5429038 5493393 + 102020120 AGCD01018843;AGCD01018844;GBCQ01002274;XM_005382175 XP_005382232 MODEL 8958452 ncrna LOC102010160 uncharacterized LOC102010160 NW_004955481 5183643 5195662 + 102010160 AGCD01056965;GBDF01117312;XR_263780;XR_263781 MODEL 8953899 protein-coding Rab14 RAB14, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN apical protein localization (ortholog); body fluid secretion (ortholog); early endosome to Golgi transport (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; FOUND IN alveolar lamellar body (ortholog); apical plasma membrane (ortholog); cilium (ortholog) NW_004955419 6790110 6812870 + 102018832 AGCD01019864;AGCD01019865;GBDF01058003;XM_005382571;XM_005382572 XP_005382628;XP_005382629 MODEL 8847499 pseudo LOC102018555 mesoderm induction early response protein 1-like NW_004955403 3675122 3683686 + 102018555 AGCD01001771 MODEL 8900294 protein-coding Pebp1 phosphatidylethanolamine binding protein 1 ENCODES a protein that exhibits ATP binding (ortholog); enzyme binding (ortholog); kinase binding (ortholog); INVOLVED IN eating behavior (ortholog); hippocampus development (ortholog); MAPK cascade (ortholog); PARTICIPATES IN the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN apical part of cell (ortholog); axon terminus (ortholog); cell surface (ortholog) NW_004955455 13217012 13222370 - 102019570 AGCD01046060;GBBH01000809;GBCQ01004424;XM_013520338 XP_013375792 MODEL 8766535 protein-coding Pcmtd2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 NW_004955528 7931 26228 - 102021384 AGCD01069513;GBCB01002206;XM_005409899 XP_005409956 MODEL 9051909 protein-coding Pamr1 peptidase domain containing associated with muscle regeneration 1 ASSOCIATED WITH congestive heart failure (ortholog); Experimental Liver Cirrhosis (ortholog); hepatocellular carcinoma (ortholog) NW_004955422 10734673 10913258 + 102009067 AGCD01022744;AGCD01022745;AGCD01022746;AGCD01022747;GBDI01291219;XM_005384122;XM_005384123;XM_013514345;XM_013514346;XM_013514347 XP_005384179;XP_005384180;XP_013369799;XP_013369800;XP_013369801 MODEL 8703582 protein-coding LOC102006777 olfactory receptor 2G6 NW_004955418 29618805 29621581 - 102006777 AGCD01019475;XM_005382357 XP_005382414 MODEL 8987121 ncrna LOC102018557 uncharacterized LOC102018557 NW_004955405 28168327 28173766 - 102018557 AGCD01005232;GBDF01303388;XR_259405 MODEL 8800605 protein-coding LOC102011316 olfactory receptor 2T2-like NW_004955418 30170706 30175904 - 102011316 AGCD01019506;GBBH01082943;XM_005382368 XP_005382425 MODEL 8864151 protein-coding Phkg2 phosphorylase kinase catalytic subunit gamma 2 ENCODES a protein that exhibits ATP binding (ortholog); calmodulin binding (ortholog); enzyme binding (ortholog); INVOLVED IN glycogen catabolic process (ortholog); glycogen metabolic process (ortholog); positive regulation of glycogen catabolic process (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); dilated cardiomyopathy (ortholog); familial lipoprotein lipase deficiency (ortholog); FOUND IN cytosol (ortholog); phosphorylase kinase complex (ortholog) NW_004955493 7612251 7622486 + 102017783 AGCD01061205;AGCD01061206;GBDI01084312;XM_005405269;XM_013504763;XM_013504764 XP_005405326;XP_013360217;XP_013360218 MODEL 8762046 ncrna LOC102007901 uncharacterized LOC102007901 NW_004955485 9441277 9448021 + 102007901 AGCD01058766;GBDF01017147;XR_263934;XR_263935 MODEL 8961613 protein-coding Brcc3 BRCA1/BRCA2-containing complex subunit 3 ENCODES a protein that exhibits enzyme regulator activity (ortholog); K63-linked deubiquitinase activity (ortholog); metal-dependent deubiquitinase activity (ortholog); INVOLVED IN cellular response to ionizing radiation (ortholog); chromatin remodeling (ortholog); DNA repair-dependent chromatin remodeling (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN BRCA1-A complex (ortholog); BRISC complex (ortholog); cytoplasm (ortholog) NW_004955594 551407 613772 - 102024964 AGCD01076434;AGCD01076435;GBCB01038463;XM_013509990;XM_013509991 XP_013365444;XP_013365445 MODEL 8725799 pseudo LOC102023197 septin-11 pseudogene NW_004955438 18236201 18238017 - 102023197 AGCD01035467;XM_005390398 MODEL 8857570 ncrna LOC102010525 uncharacterized LOC102010525 NW_004955440 3346013 3352979 + 102010525 AGCD01036240;GBBH01169042;XR_262002 MODEL 8824490 trna trnI tRNA-Ile MT 3680 3747 + 15822203 8800572 protein-coding Pcna proliferating cell nuclear antigen ENCODES a protein that exhibits chromatin binding (ortholog); damaged DNA binding (ortholog); dinucleotide insertion or deletion binding (ortholog); INVOLVED IN base-excision repair, gap-filling (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to UV (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Ataxia Telangiectasia Like Disorder (ortholog); ataxia-telangiectasia-like disorder-2 (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); cyclin-dependent protein kinase holoenzyme complex (ortholog) NW_004955415 15744601 15748910 - 102010995 AGCD01016356;GBCE01030395;XM_005380828 XP_005380885 MODEL 9012956 protein-coding Prkca protein kinase C alpha ENCODES a protein that exhibits calcium,diacylglycerol-dependent serine/threonine kinase activity (ortholog); diacylglycerol-dependent serine/threonine kinase activity (ortholog); enzyme binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to carbohydrate stimulus (ortholog); central nervous system neuron axonogenesis (ortholog); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH brain ischemia (ortholog); Breast Neoplasms (ortholog); Cardiomegaly (ortholog); FOUND IN alphav-beta3 integrin-PKCalpha complex (ortholog); apical part of cell (ortholog); axon (ortholog) NW_004955478 5686639 6090356 + 102026217 AGCD01055884;AGCD01055885;AGCD01055886;AGCD01055887;GBDF01178284;GBDF01178288;XM_013503220;XM_013503221 XP_013358674;XP_013358675 MODEL 8934067 protein-coding Slc38a2 solute carrier family 38 member 2 ENCODES a protein that exhibits acidic amino acid transmembrane transporter activity (ortholog); alanine:sodium symporter activity (ortholog); amino acid transmembrane transporter activity (ortholog); INVOLVED IN alanine transport (ortholog); amino acid import (ortholog); amino acid transmembrane transport (ortholog); ASSOCIATED WITH Contusions (ortholog); Experimental Diabetes Mellitus (ortholog); Experimental Seizures (ortholog); FOUND IN axon (ortholog); brush border (ortholog); cytoplasm (ortholog) NW_004955500 5517323 5530055 - 102012220 AGCD01063844;GBBH01063737;GBDI01139981;XM_005406598 XP_005406655 MODEL 8866233 protein-coding Rgs20 regulator of G protein signaling 20 INVOLVED IN response to amphetamine (ortholog); FOUND IN cytoplasm (ortholog); trans-Golgi network (ortholog) NW_004955454 13271409 13305730 + 102005338 AGCD01045432;GBDK01335709;XM_005396066 XP_005396123 MODEL 9001219 protein-coding Pjvk pejvakin INVOLVED IN detection of mechanical stimulus involved in sensory perception of sound (ortholog); pexophagy (ortholog); programmed cell death in response to reactive oxygen species (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 59 (ortholog); beta thalassemia (ortholog); FOUND IN ciliary rootlet (ortholog); cortical actin cytoskeleton (ortholog); cytoplasm (ortholog) NW_004955403 18386705 18393771 - 102027256 AGCD01002098;GBDJ01222619;XM_005373379 XP_005373436 MODEL 8721581 protein-coding Ptov1 PTOV1 extended AT-hook containing adaptor protein ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); Disease Progression (ortholog); long QT syndrome (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955559 1070856 1079052 - 102029454 AGCD01073628;AGCD01073629;GBDK01007823;GBDK01196056;XM_013508969 XP_013364423 MODEL 39133411 snrna U4 U4 spliceosomal RNA 8758835 protein-coding LOC102008260 PDZ domain-containing protein MAGIX NW_004955543 651286 655627 + 102008260 AGCD01071596;GBCE01116897;XM_005411322;XM_013508147;XM_013508148 XP_005411379;XP_013363601;XP_013363602 MODEL 9042646 protein-coding Rangrf RAN guanine nucleotide release factor ENCODES a protein that exhibits channel activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); mitotic spindle assembly (ortholog); positive regulation of membrane depolarization during cardiac muscle cell action potential (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Cardiac Arrhythmias (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN caveola (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955467 8622843 8624401 - 102019489 AGCD01051463;GBDI01136193;XM_005399416 XP_005399473 MODEL 8703728 protein-coding Rrbp1 ribosome binding protein 1 INVOLVED IN signal transduction (ortholog); ASSOCIATED WITH congenital dyserythropoietic anemia type II (ortholog); familial hyperinsulinemic hypoglycemia 1 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955415 26601707 26634747 - 102010154 AGCD01016600;AGCD01016601;GBBH01001406;XM_013512263 XP_013367717 MODEL 9060919 protein-coding Rgs21 regulator of G protein signaling 21 INVOLVED IN sensory perception of bitter taste (ortholog); sensory perception of sweet taste (ortholog); sensory perception of umami taste (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); Hyperparathyroidism 1 (ortholog); parathyroid carcinoma (ortholog) NW_004955406 29778745 29800009 + 102016886 AGCD01006341;AGCD01006342;XM_005375097 XP_005375154 MODEL 8724001 pseudo LOC102010932 olfactory receptor 10AG1-like NW_004955511 901202 903998 - 102010932 AGCD01066346 MODEL 8737112 protein-coding Slco4c1 solute carrier organic anion transporter family member 4C1 ENCODES a protein that exhibits organic anion transmembrane transporter activity (ortholog); INVOLVED IN organic anion transport (ortholog); PARTICIPATES IN multispecific organic anion transporter mediated transport pathway; ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); kidney failure (ortholog); FOUND IN basolateral plasma membrane (ortholog) NW_004955418 11587016 11646242 + 102005593 AGCD01019005;AGCD01019006;GBBH01222086;GBCQ01031398;XM_013513034 XP_013368488 MODEL 8818807 ncrna LOC102018561 uncharacterized LOC102018561 NW_004955406 37905165 37930172 - 102018561 AGCD01006580;GBDF01063968;XR_001236867 MODEL 8938922 pseudo LOC102017405 ADP-ribosylation factor-like protein 2-binding protein pseudogene NW_004955592 310823 312866 - 102017405 AGCD01076302 MODEL 8819832 protein-coding Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component INVOLVED IN endodermal cell fate commitment (ortholog); mRNA 3'-end processing (ortholog); negative regulation of myeloid cell differentiation (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); paraplegia (ortholog); FOUND IN Cdc73/Paf1 complex (ortholog); centrosome (ortholog); fibrillar center (ortholog) NW_004955409 2711475 2727879 + 102022791 AGCD01009215;AGCD01009216;AGCD01009217;GBBH01139969;GBDI01082426;XM_013510286 XP_013365740 MODEL 9062452 protein-coding Prune1 prune exopolyphosphatase 1 ENCODES a protein that exhibits phosphatase activity (ortholog); tubulin binding (ortholog); INVOLVED IN regulation of microtubule polymerization (ortholog); regulation of neurogenesis (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); immunodeficiency 42 (ortholog); FOUND IN cytosol (ortholog) NW_004955588 379793 408441 + 102019126 AGCD01076108;AGCD01076109;GBCQ01093042;XM_005414471;XM_013509914;XM_013509915 XP_005414528;XP_013365368;XP_013365369 MODEL 8880586 protein-coding Senp2 SUMO specific peptidase 2 ENCODES a protein that exhibits deSUMOylase activity (ortholog); protein domain specific binding (ortholog); SUMO-specific endopeptidase activity (ortholog); INVOLVED IN dorsal/ventral axis specification (ortholog); fat cell differentiation (ortholog); heart development (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Currarino syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); nuclear pore (ortholog) NW_004955420 21969537 22005094 - 102010373 AGCD01021176;AGCD01021177;GBBH01117914;GBDF01051391;XM_005383292 XP_005383349 MODEL 9012684 protein-coding Thoc2 THO complex 2 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN blastocyst development (ortholog); cell morphogenesis (ortholog); generation of neurons (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; ASSOCIATED WITH arthrogryposis multiplex congenita-7, X-linked (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955473 11029860 11143493 + 102018825 AGCD01054129;AGCD01054130;GBCE01187645;XM_005401279;XM_005401282;XM_005401283;XM_005401284;XM_013523054;XM_013523055;XM_013523056;XM_013523057;XM_013523058 XP_005401336;XP_005401339;XP_005401340;XP_005401341;XP_013378508;XP_013378509;XP_013378510;XP_013378511;XP_013378512 MODEL 9049996 protein-coding Wasf1 WASP family member 1 ENCODES a protein that exhibits protein kinase A binding (ortholog); small GTPase binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cellular response to brain-derived neurotrophic factor stimulus (ortholog); dendrite extension (ortholog); ASSOCIATED WITH COVID-19 (ortholog); generalized epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); lamellipodium (ortholog); mitochondrial outer membrane (ortholog) NW_004955411 34893287 34966670 - 102022176 AGCD01012417;AGCD01012418;GBDF01123264;XM_005377883;XM_005377884;XM_013510825 XP_005377940;XP_005377941;XP_013366279 MODEL 8737569 pseudo LOC102010171 40S ribosomal protein SA pseudogene NW_004955421 22931886 22933055 - 102010171 AGCD01022164 MODEL 8803800 protein-coding LOC102024186 cytochrome P450 11B2, mitochondrial-like NW_004955454 1627309 1662347 + 102024186 AGCD01044977;XM_013520011 XP_013375465 MODEL 8789286 pseudo LOC102012529 nicotinamide phosphoribosyltransferase-like NW_004955414 15004805 15007553 + 102012529 AGCD01015167 MODEL 8972871 protein-coding Polr1f RNA polymerase I subunit F INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN RNA polymerase I complex (ortholog) NW_004955410 22435136 22442839 - 102028505 AGCD01011074;GBCB01041940;XM_005377356 XP_005377413 MODEL 9061329 ncrna LOC102003614 uncharacterized LOC102003614 NW_004955404 19125609 19150116 - 102003614 AGCD01003639;GBDK01198293;XR_259318 MODEL 8953204 protein-coding Spta1 spectrin alpha, erythrocytic 1 INVOLVED IN actin cytoskeleton organization (ortholog); hemopoiesis (ortholog); lymphocyte homeostasis (ortholog); ASSOCIATED WITH anemia (ortholog); autoimmune interstitial lung, joint, and kidney disease (ortholog); congenital hemolytic anemia (ortholog); FOUND IN axon (ortholog); cortical cytoskeleton (ortholog); cuticular plate (ortholog) NW_004955468 10472601 10545402 - 102027631 AGCD01052084;AGCD01052085;AGCD01052086;GBBH01036924;XM_013522277 XP_013377731 MODEL 8757824 protein-coding Rab15 RAB15, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); INVOLVED IN positive regulation of regulated secretory pathway (ortholog); receptor-mediated endocytosis (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); endosome membrane (ortholog) NW_004955466 4958414 4981464 + 102025224 AGCD01050864;GBBH01091286;XM_005399114;XR_001236781 XP_005399171 MODEL 8822821 ncrna LOC102021500 uncharacterized LOC102021500 NW_004955449 3631986 3636241 + 102021500 AGCD01041858;GBDF01211884;XR_262486 MODEL 8961186 pseudo LOC102006405 lupus La protein homolog pseudogene NW_004955449 5976871 5978023 + 102006405 AGCD01041946 MODEL 8728411 ncrna LOC102015488 uncharacterized LOC102015488 NW_004955464 912810 999951 - 102015488 AGCD01049942;AGCD01049943;GBCB01042127;XR_001236695;XR_001236696;XR_263184;XR_263185 MODEL 9001062 protein-coding LOC102018913 uncharacterized protein C12orf71 homolog NW_004955413 6921977 6923948 - 102018913 AGCD01013784;GBDF01150110;XM_005379614 XP_005379671 MODEL 8755462 protein-coding Plk3 polo like kinase 3 ENCODES a protein that exhibits p53 binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cytoplasmic microtubule organization (ortholog); DNA damage response (ortholog); G1/S transition of mitotic cell cycle (ortholog); ASSOCIATED WITH breast carcinoma (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); COVID-19 (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955464 13419562 13424104 - 102006642 AGCD01050275;GBBH01135021;GBCE01163140;XM_013521627;XM_013521628 XP_013377081;XP_013377082 MODEL 9011810 protein-coding Pebp4 phosphatidylethanolamine binding protein 4 ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog) NW_004955403 46126263 46317830 - 102015475 AGCD01002850;AGCD01002851;AGCD01002852;AGCD01002853;AGCD01002854;AGCD01002855;GBBH01102343;XM_005373691;XM_013513921 XP_005373748;XP_013369375 MODEL 10296316 ncrna LOC106149810 uncharacterized LOC106149810 NW_004955454 6049679 6065062 + 106149810 AGCD01045206;AGCD01045207;AGCD01045208;AGCD01045209;AGCD01045210;XR_001236223 MODEL 8907597 pseudo LOC102006780 serine/threonine-protein phosphatase CPPED1 pseudogene NW_004955484 8142928 8153116 + 102006780 AGCD01058371 MODEL 8893516 pseudo LOC102005342 COP9 signalosome complex subunit 8 pseudogene NW_004955457 11873480 11874149 - 102005342 AGCD01046991 MODEL 8946454 ncrna LOC102011319 uncharacterized LOC102011319 NW_004955484 8530719 8557626 + 102011319 AGCD01058391;AGCD01058392;AGCD01058393;GBDF01038957;XR_263894 MODEL 8829708 protein-coding Pan2 poly(A) specific ribonuclease subunit PAN2 ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); poly(A)-specific ribonuclease activity (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN P-body (ortholog); PAN complex (ortholog) NW_004955458 3925356 3946879 - 102006637 AGCD01047354;AGCD01047355;GBDI01291830;XM_005397303;XM_005397306;XM_013520832;XM_013520833;XM_013520834;XM_013520835;XM_013520836;XM_013520837;XM_013520838;XM_013520839 XP_005397360;XP_005397363;XP_013376286;XP_013376287;XP_013376288;XP_013376289;XP_013376290;XP_013376291;XP_013376292;XP_013376293 MODEL 8788869 protein-coding Rap1a RAP1A, member of RAS oncogene family ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to forskolin (ortholog); cellular response to glucose stimulus (ortholog); PARTICIPATES IN adenosine signaling pathway; E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Hyperoxaluria (ortholog); Myocardial Reperfusion Injury (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); early endosome (ortholog) NW_004955435 15090521 15171397 + 102028125 AGCD01033262;GBCQ01034816;XM_005388951;XM_013516528;XM_013516529 XP_005389008;XP_013371982;XP_013371983 MODEL 8881566 pseudo LOC102023198 speckle-type POZ protein pseudogene NW_004955546 94701 95906 + 102023198 AGCD01071949;XM_005411815 MODEL 8978721 protein-coding Brd1 bromodomain containing 1 ENCODES a protein that exhibits histone H3K14 acetyltransferase activity (ortholog); histone H4K12 acetyltransferase activity (ortholog); histone H4K5 acetyltransferase activity (ortholog); INVOLVED IN positive regulation of erythrocyte differentiation (ortholog); response to electrical stimulus (ortholog); response to immobilization stress (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); autism spectrum disorder (ortholog); bipolar disorder (ortholog); FOUND IN dendrite (ortholog); histone H3-K14 acetyltransferase complex (ortholog); MOZ/MORF histone acetyltransferase complex (ortholog) NW_004955413 32935827 32973820 - 102016580 AGCD01014652;GBDK01189055;XM_005379525;XM_005379526;XM_013511532 XP_005379582;XP_005379583;XP_013366986 MODEL 9015682 ncrna LOC102010530 uncharacterized LOC102010530 NW_004955446 355157 517018 + 102010530 AGCD01039940;AGCD01039941;AGCD01039942;AGCD01039943;AGCD01039944;GBDF01235331;XR_001235683;XR_262362 MODEL 8912037 protein-coding Snrpd2 small nuclear ribonucleoprotein D2 polypeptide ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH systemic lupus erythematosus (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); methylosome (ortholog) NW_004955574 157769 164947 - 102018238 AGCD01075087;AGCD01075088;GBCC01043779;XM_005413802 XP_005413859 MODEL 8901755 protein-coding Naxe NAD(P)HX epimerase ENCODES a protein that exhibits identical protein binding (ortholog); NAD(P)HX epimerase activity (ortholog); INVOLVED IN membrane raft distribution (ortholog); metabolite repair (ortholog); negative regulation of angiogenesis (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); Early-Onset Progressive Encephalopathy with Brain Edema and/or Leukoencephalopathy (ortholog); Early-Onset Progressive Encephalopathy with Brain Edema and/or Leukoencephalopathy 1 (ortholog); FOUND IN cell body (ortholog); cilium (ortholog); cytosol (ortholog) NW_004955545 2682384 2687348 + 102005184 AGCD01071916;GBDI01005442;XM_005411688 XP_005411745 MODEL 8722318 protein-coding Slc25a10 solute carrier family 25 member 10 ENCODES a protein that exhibits dicarboxylic acid transmembrane transporter activity (ortholog); malate transmembrane transporter activity (ortholog); phosphate transmembrane transporter activity (ortholog); INVOLVED IN glyceraldehyde-3-phosphate biosynthetic process (ortholog); malate transport (ortholog); phosphate ion transport (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955506 1389798 1396670 - 102028111 AGCD01065262;GBCQ01002900;XM_005407261 XP_005407318 MODEL 8928336 protein-coding Pcnp PEST proteolytic signal containing nuclear protein INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); protein ubiquitination (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955427 3142340 3162172 + 102029204 AGCD01026918;AGCD01026919;AGCD01026920;AGCD01026921;GBCQ01005265;GBDK01127980;XM_005386324 XP_005386381 MODEL 9040604 protein-coding Trim3 tripartite motif containing 3 ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN neural precursor cell proliferation (ortholog); positive regulation of toll-like receptor 3 signaling pathway (ortholog); protein K63-linked ubiquitination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); Golgi apparatus (ortholog) NW_004955414 22181999 22207244 - 102021962 AGCD01015448;GBCE01154433;XM_005380144;XM_005380145;XM_005380146 XP_005380201;XP_005380202;XP_005380203 MODEL 8968612 protein-coding Pkd1 polycystin 1, transient receptor potential channel interacting ENCODES a protein that exhibits calcium channel activity (ortholog); monoatomic cation channel activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN blood vessel development (ortholog); branching morphogenesis of an epithelial tube (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); Abnormal Cortical Gyration (ortholog); Animal Disease Models (ortholog); FOUND IN basolateral plasma membrane (ortholog); calcium channel complex (ortholog); cation channel complex (ortholog) NW_004955442 15132555 15178377 + 102007374 AGCD01037860;GBBH01090152;GBBH01090234;XM_013517656 XP_013373110 MODEL 9025248 pseudo LOC102012538 peroxiredoxin-6-like NW_004955482 9359566 9361203 + 102012538 AGCD01057566 MODEL 8823516 pseudo LOC102018924 40S ribosomal protein S24 pseudogene NW_004955475 10115494 10123426 - 102018924 AGCD01055082 MODEL 9066928 protein-coding LOC102007904 C-C chemokine receptor type 1-like NW_004955420 25908976 25909943 + 102007904 AGCD01021382;XM_013513596 XP_013369050 MODEL 8824837 protein-coding LOC102015491 tubulin beta-2A chain NW_004955465 10042089 10045394 + 102015491 AGCD01050500;GBDF01189379;XM_005398897 XP_005398954 MODEL 8877264 protein-coding Rgs22 regulator of G protein signaling 22 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); ASSOCIATED WITH Cohen syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955417 15284368 15381984 - 102014356 AGCD01018227;AGCD01018228;AGCD01018229;AGCD01018230;AGCD01018231;GBBH01116898;XM_013512826 XP_013368280 MODEL 8823120 trna trnK(ttt) tRNA-Lys MT 7704 7770 + 15822206 8812178 protein-coding LOC102017406 basic salivary proline-rich protein 3-like NW_004955402 59976556 59982050 - 102017406 AGCD01001574;GBDF01303658;XM_005373093;XM_005373094;XR_259110 XP_005373150;XP_005373151 MODEL 8744261 pseudo LOC102012540 ubiquitin carboxyl-terminal hydrolase 28 pseudogene NW_004955485 2178951 2183590 - 102012540 AGCD01058507;XM_005403918 MODEL 9016915 protein-coding Lep leptin ENCODES a protein that exhibits DNA binding (ortholog); hormone activity (ortholog); leptin receptor binding (ortholog); INVOLVED IN activation of protein kinase C activity (ortholog); adipose tissue development (ortholog); adult feeding behavior (ortholog); PARTICIPATES IN altered energy homeostasis pathway; altered leptin system pathway; energy homeostasis pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); abdominal obesity-metabolic syndrome 1 (ortholog); acute pancreatitis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular space (ortholog) NW_004955479 9266604 9276568 + 102025002 AGCD01056457;GBCB01004075;XM_005402367 XP_005402424 MODEL 9001664 protein-coding Pecam1 platelet and endothelial cell adhesion molecule 1 ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein phosphatase binding (ortholog); INVOLVED IN angiogenesis (ortholog); bicellular tight junction assembly (ortholog); cell adhesion (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Acute Lung Injury (ortholog); atherosclerosis (ortholog); FOUND IN cell periphery (ortholog); cell surface (ortholog); cell-cell contact zone (ortholog) NW_004955478 7448584 7531860 + 102014777 AGCD01055964;AGCD01055965;AGCD01055966;AGCD01055967;AGCD01055968;AGCD01055969;AGCD01055970;AGCD01055971;AGCD01055972;AGCD01055973;AGCD01055974;AGCD01055975;GBCQ01033991;XM_005402168;XM_013503222;XM_013503223;XM_013503224 XP_005402225;XP_013358676;XP_013358677;XP_013358678 MODEL 8958270 ncrna LOC102023199 uncharacterized LOC102023199 NW_004955441 15211964 15214246 + 102023199 AGCD01037244;GBDF01213433;XR_262084 MODEL 8916232 protein-coding Pan3 poly(A) specific ribonuclease subunit PAN3 ENCODES a protein that exhibits poly(A)-specific ribonuclease activity (ortholog); INVOLVED IN deadenylation-dependent decapping of nuclear-transcribed mRNA (ortholog); positive regulation of cytoplasmic mRNA processing body assembly (ortholog); protein targeting (ortholog); PARTICIPATES IN microRNA pathway; FOUND IN P-body (ortholog); PAN complex (ortholog) NW_004955497 7500478 7646541 + 102017035 AGCD01062678;AGCD01062679;AGCD01062680;AGCD01062681;GBDF01007425;GBDI01016760;XM_013505498 XP_013360952 MODEL 8828615 protein-coding Slc38a3 solute carrier family 38 member 3 ENCODES a protein that exhibits L-alanine transmembrane transporter activity (ortholog); L-asparagine transmembrane transporter activity (ortholog); L-asparagine, sodium:proton antiporter activity (ortholog); INVOLVED IN asparagine transport (ortholog); cellular response to potassium ion starvation (ortholog); female pregnancy (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 102 (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); membrane (ortholog) NW_004955532 2023694 2046556 + 102026468 AGCD01070209;AGCD01070210;AGCD01070211;GBCQ01114446;XM_005410248;XM_005410249 XP_005410305;XP_005410306 MODEL 9037517 protein-coding LOC102009405 suppressor protein SRP40-like NW_004955428 50432 51439 - 102009405 AGCD01027559;XM_005386839 XP_005386896 MODEL 8886161 pseudo LOC102010531 60S ribosomal protein L37 pseudogene NW_004955446 2571700 2571990 + 102010531 AGCD01039985 MODEL 8897517 protein-coding Ptp4a1 protein tyrosine phosphatase 4A1 ENCODES a protein that exhibits protein tyrosine phosphatase activity (ortholog); INVOLVED IN positive regulation of cell migration (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955502 322827 329226 - 102023377 AGCD01064234;GBDK01070331;XM_005406875 XP_005406932 MODEL 39133413 snrna U4 U4 spliceosomal RNA 8782775 protein-coding LOC102008265 keratin, type II cuticular Hb6 NW_004955547 2650341 2656801 + 102008265 AGCD01072290;AGCD01072291;GBDF01140560;XM_005411939 XP_005411996 MODEL 10124850 protein-coding LOC106146982 keratin-associated protein 20-2-like NW_004955407 30243312 30243461 - 106146982 AGCD01007629;XM_013506333 XP_013361787 MODEL 9066213 ncrna LOC102010532 uncharacterized LOC102010532 NW_004955447 16858642 16860472 - 102010532 AGCD01041110;GBDF01286927;XR_001235700 MODEL 39131959 snorna SNORD116 Small nucleolar RNA SNORD116 8758778 pseudo LOC102006781 calmodulin pseudogene NW_004955420 5731109 5732180 - 102006781 AGCD01020679;XM_005383023 MODEL 39133415 snrna U4 U4 spliceosomal RNA 8758313 protein-coding Prkcb protein kinase C beta ENCODES a protein that exhibits calcium channel regulator activity (ortholog); calcium,diacylglycerol-dependent serine/threonine kinase activity (ortholog); chromatin binding (ortholog); INVOLVED IN B cell activation (ortholog); B cell receptor signaling pathway (ortholog); calcium ion transport (ortholog); PARTICIPATES IN insulin signaling pathway; interleukin-2 signaling pathway; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); Alzheimer's disease (ortholog); autistic disorder (ortholog); FOUND IN brush border membrane (ortholog); calyx of Held (ortholog); centrosome (ortholog) NW_004955493 2395494 2710522 + 102015323 AGCD01060951;AGCD01060952;AGCD01060953;AGCD01060954;AGCD01060955;AGCD01060956;AGCD01060957;AGCD01060958;AGCD01060959;AGCD01060960;AGCD01060961;GBDI01025873;XM_005405341 XP_005405398 MODEL 8804840 protein-coding Rap1b RAP1B, member of RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN calcium-ion regulated exocytosis (ortholog); cell population proliferation (ortholog); cellular response to cAMP (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; platelet-derived growth factor signaling pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); Thrombocytopenia 11 (ortholog); FOUND IN cell-cell junction (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955458 15110709 15121868 + 102005445 AGCD01047864;GBDK01005189;XM_013520897 XP_013376351 MODEL 8757510 pseudo LOC102015492 guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 pseudogene NW_004955412 25888206 25888471 - 102015492 AGCD01013177 MODEL 9060687 protein-coding Thoc3 THO complex 3 INVOLVED IN mRNA export from nucleus (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Sotos syndrome (ortholog); FOUND IN chromosome, telomeric region (ortholog); THO complex part of transcription export complex (ortholog); transcription export complex (ortholog) NW_004955408 28467540 28480613 - 102008381 AGCD01008713;GBDK01394321;XM_005376367 XP_005376424 MODEL 39131960 snorna SNORD116 Small nucleolar RNA SNORD116 8964783 protein-coding Rbpms RNA binding protein, mRNA processing factor ENCODES a protein that exhibits identical protein binding (ortholog); molecular adaptor activity (ortholog); mRNA 3'-UTR binding (ortholog); INVOLVED IN protein-containing complex assembly (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); response to oxidative stress (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955463 6817570 6973393 + 102008510 AGCD01049706;AGCD01049707;AGCD01049708;AGCD01049709;GBCQ01000539;GBDI01292820;XM_005398470 XP_005398527 MODEL 8814918 protein-coding Osgepl1 O-sialoglycoprotein endopeptidase like 1 ENCODES a protein that exhibits N(6)-L-threonylcarbamoyladenine synthase activity (ortholog); INVOLVED IN tRNA threonylcarbamoyladenosine modification (ortholog); ASSOCIATED WITH immunodeficiency 31B (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrion (ortholog) NW_004955403 9118419 9136840 + 102006852 AGCD01001901;GBDK01060280;XM_005373318 XP_005373375 MODEL 8841639 pseudo LOC102021503 synaptobrevin homolog YKT6 pseudogene NW_004955402 16757606 16758112 - 102021503 AGCD01000488 MODEL 8870438 protein-coding Polr1g RNA polymerase I subunit G INVOLVED IN rRNA transcription (ortholog); transcription initiation at RNA polymerase I promoter (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH cerebrooculofacioskeletal syndrome 4 (ortholog); multiple myeloma (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); mitochondrion (ortholog) NW_004955555 2389569 2393410 + 102013014 AGCD01073149;GBDF01040878;XM_005412525;XM_013508708 XP_005412582;XP_013364162 MODEL 8895493 protein-coding Nbas NBAS subunit of NRZ tethering complex ENCODES a protein that exhibits SNARE binding (ortholog); INVOLVED IN negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); nuclear-transcribed mRNA catabolic process (ortholog); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); amenorrhea (ortholog); Disease Progression (ortholog); FOUND IN Dsl1/NZR complex (ortholog); endoplasmic reticulum (ortholog) NW_004955487 8894403 9073535 - 102011551 AGCD01059444;AGCD01059445;AGCD01059446;AGCD01059447;AGCD01059448;AGCD01059449;GBDK01089448;XM_005404440;XM_013504348 XP_005404497;XP_013359802 MODEL 8916945 protein-coding Lepr leptin receptor ENCODES a protein that exhibits identical protein binding (ortholog); leptin receptor activity (ortholog); peptide hormone binding (ortholog); INVOLVED IN angiogenesis (ortholog); bone growth (ortholog); cell surface receptor signaling pathway via STAT (ortholog); PARTICIPATES IN altered energy homeostasis pathway; altered leptin system pathway; energy homeostasis pathway; ASSOCIATED WITH Albuminuria (ortholog); Animal Disease Models (ortholog); arteriosclerosis (ortholog); FOUND IN extracellular space (ortholog); receptor complex (ortholog) NW_004955423 25108897 25185315 - 102022716 AGCD01024052;AGCD01024053;AGCD01024054;AGCD01024055;AGCD01024056;GBCB01086455;XM_005385299;XM_005385300 XP_005385356;XP_005385357 MODEL 8932735 protein-coding Phlda1 pleckstrin homology like domain family A member 1 INVOLVED IN FasL biosynthetic process (ortholog); forebrain neuron differentiation (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); atrial fibrillation (ortholog); cognitive disorder (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955405 15318785 15321316 - 102010219 AGCD01004942;AGCD01004943;GBCE01084948;XM_005374337 XP_005374394 MODEL 8892307 protein-coding Slc25a11 solute carrier family 25 member 11 ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); oxoglutarate:malate antiporter activity (ortholog); INVOLVED IN gluconeogenesis (ortholog); malate-aspartate shuttle (ortholog); PARTICIPATES IN fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; glycogen storage disease type Ia pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); congenital myasthenic syndrome 4A (ortholog); Paragangliomas 6 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955467 10349378 10352649 - 102019491 AGCD01051561;GBCB01004634;XM_005399613;XM_005399615 XP_005399670;XP_005399672 MODEL 8964911 pseudo LOC102010935 histone-binding protein RBBP4 pseudogene NW_004955515 5132224 5133419 - 102010935 AGCD01067339 MODEL 8924647 pseudo LOC102018563 tubulin alpha-1 chain-like NW_004955406 11720895 11730389 + 102018563 AGCD01005894;XM_005375458 MODEL 9049960 pseudo LOC102018931 histone H2B 7-like NW_004955483 868739 870866 - 102018931 AGCD01057634 MODEL 8817137 protein-coding LOC102005343 cytochrome P450 2J2-like NW_004955457 13519513 13582133 + 102005343 AGCD01047047;AGCD01047048;AGCD01047049;GBCB01120042;XM_013520668 XP_013376122 MODEL 8892359 protein-coding Elp1 elongator acetyltransferase complex subunit 1 ENCODES a protein that exhibits ATP binding (ortholog); protein kinase activity (ortholog); INVOLVED IN I-kappaB phosphorylation (ortholog); tRNA wobble uridine modification (ortholog); ASSOCIATED WITH asthma (ortholog); Breast Neoplasms (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); elongator holoenzyme complex (ortholog) NW_004955419 18035197 18097681 + 102020672 AGCD01020168;GBDF01196206;XM_005382757;XM_013513174 XP_005382814;XP_013368628 MODEL 9015663 protein-coding Osgin2 oxidative stress induced growth inhibitor family member 2 ASSOCIATED WITH Nijmegen breakage syndrome (ortholog) NW_004955417 6816348 6833257 + 102009280 AGCD01017991;GBCE01104274;GBDJ01139676;XM_013512752 XP_013368206 MODEL 10390353 ncrna LOC106146983 uncharacterized LOC106146983 NW_004955511 3791775 3796969 + 106146983 AGCD01066476;GBDI01281827;XR_001231672 MODEL 8715244 trna trnL1(tag) tRNA-Leu MT 11681 11750 + 15822232 8849395 pseudo LOC102024188 biogenesis of lysosome-related organelles complex 1 subunit 1 pseudogene NW_004955454 2557743 2558120 + 102024188 AGCD01045023;XM_005396109 MODEL 8818132 pseudo LOC102018568 tripartite motif-containing protein 44 pseudogene NW_004955407 42667907 42670883 + 102018568 AGCD01007895 MODEL 8889064 protein-coding LOC102017407 angiopoietin-4-like NW_004955596 225427 237637 + 102017407 AGCD01076510;AGCD01076511;XM_013510011;XM_013510012 XP_013365465;XP_013365466 MODEL 9057948 ncrna LOC102012541 uncharacterized LOC102012541 NW_004955420 22215125 22224734 - 102012541 AGCD01021189;GBDJ01422894;XR_260735 MODEL 8896992 protein-coding Rab17 RAB17, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTPase activity (ortholog); INVOLVED IN anterograde dendritic transport (ortholog); cilium assembly (ortholog); endocytic recycling (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); dendrite (ortholog) NW_004955542 2751953 2759661 + 102016749 AGCD01071536;AGCD01071537;XM_005411250 XP_005411307 MODEL 8994863 pseudo LOC102006407 28S ribosomal protein S36, mitochondrial pseudogene NW_004955402 32490863 32492527 - 102006407 AGCD01000824 MODEL 9032292 protein-coding LOC102009408 von Ebner gland protein 1-like NW_004955513 2571693 2576942 + 102009408 AGCD01066882;GBBH01002065;XM_005408419 XP_005408476 MODEL 8961049 protein-coding Snai3 snail family transcriptional repressor 3 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of DNA-templated transcription (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 4 (ortholog); Fanconi anemia (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955541 2593530 2599105 - 102004972 AGCD01071418;GBCB01024899;XM_005411019 XP_005411076 MODEL 9033515 protein-coding Prkcd protein kinase C delta ENCODES a protein that exhibits diacylglycerol-dependent serine/threonine kinase activity (ortholog); diacylglycerol-dependent, calcium-independent serine/threonine kinase activity (ortholog); enzyme activator activity (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); apoptotic process (ortholog); B cell proliferation (ortholog); PARTICIPATES IN ceramide signaling pathway; eicosanoid signaling pathway; endothelin signaling pathway; ASSOCIATED WITH autoimmune lymphoproliferative syndrome type 3 (ortholog); brain ischemia (ortholog); Burns (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955430 3125066 3151857 + 102029544 AGCD01029192;AGCD01029193;GBDI01068073;XM_005387365;XM_013515681;XM_013515682 XP_005387422;XP_013371135;XP_013371136 MODEL 8837390 protein-coding Plk4 polo like kinase 4 ENCODES a protein that exhibits identical protein binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN centriole replication (ortholog); cilium assembly (ortholog); de novo centriole assembly involved in multi-ciliated epithelial cell differentiation (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); colon cancer (ortholog); diabetic retinopathy (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); cytosol (ortholog) NW_004955428 13548485 13566786 - 102005492 AGCD01027958;AGCD01027959;GBDF01044579;XM_005386739 XP_005386796 MODEL 9058391 protein-coding Slco6a1 solute carrier organic anion transporter family member 6A1 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN CatSper complex (ortholog) NW_004955418 11451441 11516950 + 102004816 AGCD01019004;GBDF01005273;XM_005382210;XM_005382211 XP_005382267;XP_005382268 MODEL 10336179 ncrna LOC106149811 uncharacterized LOC106149811 NW_004955406 4686391 4689728 + 106149811 AGCD01005699;GBCQ01175564;XR_001236228 MODEL 8982321 ncrna LOC102008271 uncharacterized LOC102008271 NW_004955445 2704964 2707871 - 102008271 AGCD01039363;GBCE01111187;XR_262299 MODEL 8943180 protein-coding Trim32 tripartite motif containing 32 ENCODES a protein that exhibits identical protein binding (ortholog); myosin binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN actin ubiquitination (ortholog); autophagosome assembly (ortholog); axon development (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2H (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN autophagosome (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955419 11151751 11168046 - 102003875 AGCD01019953;GBDF01241008;XM_005382612;XM_005382613;XM_005382614;XM_005382615;XM_005382616;XM_013513264 XP_005382669;XP_005382670;XP_005382671;XP_005382672;XP_005382673;XP_013368718 MODEL 9026158 ncrna LOC102011320 uncharacterized LOC102011320 NW_004955485 7682452 7684730 - 102011320 AGCD01058670;GBCB01006341;XR_263922 MODEL 8771618 protein-coding Rab18 RAB18, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTPase activity (ortholog); INVOLVED IN endoplasmic reticulum tubular network organization (ortholog); import into nucleus (ortholog); lipid droplet organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); Warburg micro syndrome (ortholog); Warburg micro syndrome 3 (ortholog); FOUND IN cis-Golgi network membrane (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum tubular network (ortholog) NW_004955462 1380158 1411804 + 102025662 AGCD01049116;AGCD01049117;GBDF01088111;GBDF01088112;XM_013521463 XP_013376917 MODEL 8758934 protein-coding Prune2 prune homolog 2 with BCH domain ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); presynapse (ortholog) NW_004955512 2469773 2727067 + 102010829 AGCD01066680;AGCD01066681;AGCD01066682;AGCD01066683;AGCD01066684;GBDJ01112903;XM_013506527 XP_013361981 MODEL 8986116 pseudo LOC102010940 T-complex protein 1 subunit zeta-like NW_004955523 256492 260604 - 102010940 AGCD01068440 MODEL 8732835 ncrna LOC102006782 uncharacterized LOC102006782 NW_004955487 482152 483842 + 102006782 AGCD01059218;GBCE01175126;XR_001231161 MODEL 8743577 protein-coding LOC102010175 sulfotransferase 1A1-like NW_004955493 6792319 6795493 - 102010175 AGCD01061139;AGCD01061140;GBCQ01097961;GBCQ01097964;XM_013504817 XP_013360271 MODEL 8730296 ncrna LOC102018932 uncharacterized LOC102018932 NW_004955419 13903856 13908224 - 102018932 AGCD01020009;GBDF01187427;XR_260628 MODEL 8875362 protein-coding Tox thymocyte selection associated high mobility group box ENCODES a protein that exhibits chromatin DNA binding (ortholog); INVOLVED IN CD4-positive, alpha-beta T cell lineage commitment (ortholog); CD4-positive, CD25-positive, alpha-beta regulatory T cell lineage commitment (ortholog); CD8-positive, alpha-beta T cell lineage commitment (ortholog); FOUND IN nucleus (ortholog) NW_004955444 19453789 19796419 + 102004528 AGCD01039281;AGCD01039282;AGCD01039283;AGCD01039284;AGCD01039285;AGCD01039286;AGCD01039287;AGCD01039288;AGCD01039289;AGCD01039290;GBDI01356789;XM_005392187;XM_005392188;XM_005392189;XM_005392190;XM_013518215 XP_005392244;XP_005392245;XP_005392246;XP_005392247;XP_013373669 MODEL 9043618 ncrna LOC102003615 uncharacterized LOC102003615 NW_004955405 22571094 22618074 - 102003615 AGCD01005096;AGCD01005097;GBDF01187374;XR_001235464;XR_001235465 MODEL 8769505 protein-coding Snrpd3 small nuclear ribonucleoprotein D3 polypeptide ENCODES a protein that exhibits enzyme binding (ortholog); histone pre-mRNA DCP binding (ortholog); RNA binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); protein methylation (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); epilepsy (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955455 8021946 8045325 + 102004141 AGCD01045870;GBDF01081549;XM_005396392 XP_005396449 MODEL 8948569 protein-coding Wasf2 WASP family member 2 ENCODES a protein that exhibits protein kinase A binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament-based movement (ortholog); ameboidal-type cell migration (ortholog); PARTICIPATES IN E-cadherin signaling pathway; platelet-derived growth factor signaling pathway; FOUND IN cell-cell junction (ortholog); early endosome (ortholog); lamellipodium (ortholog) NW_004955452 6658854 6733964 - 102004775 AGCD01044118;AGCD01044119;AGCD01044120;AGCD01044121;AGCD01044122;AGCD01044123;AGCD01044124;GBCE01074273;XM_005394909;XM_013519649 XP_005394966;XP_013375103 MODEL 39131961 snorna SNORD116 Small nucleolar RNA SNORD116 8914228 protein-coding LOC102015496 neuferricin ENCODES a protein that exhibits heme binding (ortholog); INVOLVED IN neuron differentiation (ortholog); positive regulation of neuron differentiation (ortholog); FOUND IN extracellular region (ortholog) NW_004955467 12738072 12760212 - 102015496 AGCD01051658;GBDF01148203;XM_005399697;XM_005399698;XM_013522067;XM_013522069 XP_005399754;XP_005399755;XP_013377521;XP_013377523 MODEL 8843669 trna trnL2 tRNA-Leu MT 2643 2718 + 15822217 8728967 ncrna LOC102011728 uncharacterized LOC102011728 NW_004955405 4802647 4833270 - 102011728 AGCD01004653;AGCD01004654;AGCD01004655;GBDF01208522;XR_001235207;XR_259362 MODEL 8880676 protein-coding Pank1 pantothenate kinase 1 ENCODES a protein that exhibits acetyl-CoA binding (ortholog); pantothenate kinase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN coenzyme A biosynthetic process (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH Nerve Degeneration (ortholog); FOUND IN cell periphery (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955425 3384023 3433808 + 102015421 AGCD01025289;GBBH01193123;XM_005385848 XP_005385905 MODEL 8777141 protein-coding Ptp4a2 protein tyrosine phosphatase 4A2 ENCODES a protein that exhibits enzyme inhibitor activity (ortholog); ASSOCIATED WITH diastolic heart failure (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955452 10293958 10331868 - 102013578 AGCD01044271;AGCD01044272;AGCD01044273;GBDI01068104;XM_005395037 XP_005395094 MODEL 8967147 protein-coding Rreb1 ras responsive element binding protein 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of brown fat cell differentiation (ortholog); ASSOCIATED WITH amenorrhea (ortholog); microcephaly (ortholog); RASopathy (ortholog); FOUND IN fibrillar center (ortholog); nuclear speck (ortholog) NW_004955465 6572593 6757423 - 102030398 AGCD01050445;AGCD01050446;AGCD01050447;AGCD01050448;GBDJ01141847;XM_005398860;XM_005398862;XM_005398863;XM_005398865;XM_005398868;XM_013521815;XM_013521816;XM_013521817;XM_013521818;XM_013521819 XP_005398917;XP_005398919;XP_005398920;XP_005398922;XP_005398925;XP_013377269;XP_013377270;XP_013377271;XP_013377272;XP_013377273 MODEL 9025581 protein-coding Rap1gap RAP1 GTPase activating protein ENCODES a protein that exhibits GTPase activator activity (ortholog); protein homodimerization activity (ortholog); small GTPase binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); cellular response to glial cell derived neurotrophic factor (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); acute promyelocytic leukemia (ortholog); bipolar disorder (ortholog); FOUND IN axon (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955452 1886557 1950942 - 102029817 AGCD01043869;AGCD01043870;GBDI01071245;XM_013519605;XM_013519606;XM_013519607;XR_001236073;XR_001236074;XR_001236075;XR_001236076;XR_001236077;XR_001236078;XR_001236079;XR_001236080 XP_013375059;XP_013375060;XP_013375061 MODEL 8735282 protein-coding LOC102021507 zinc finger protein 883-like NW_004955624 87138 106468 - 102021507 AGCD01077434;AGCD01077435;AGCD01077436;XM_013510159 XP_013365613 MODEL 9004493 protein-coding Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting INVOLVED IN detection of nodal flow (ortholog); determination of left/right symmetry (ortholog); heart development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital chylothorax (ortholog); genetic disease (ortholog); FOUND IN calcium channel complex (ortholog); ciliary membrane (ortholog); cilium (ortholog) NW_004955456 5497126 5582342 + 102007085 AGCD01046333;AGCD01046334;AGCD01046335;AGCD01046336;AGCD01046337;AGCD01046338;GBCE01121174;XM_013520637 XP_013376091 MODEL 8703055 protein-coding Polr1h RNA polymerase I subunit H PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH Experimental Neoplasms (ortholog); megacolon (ortholog); Stomach Neoplasms (ortholog); FOUND IN RNA polymerase I complex (ortholog) NW_004955583 191252 195563 + 102010006 AGCD01075801;AGCD01075802;GBDF01080016;XM_005414292;XM_005414293 XP_005414349;XP_005414350 MODEL 9055161 protein-coding Slc25a12 solute carrier family 25 member 12 ENCODES a protein that exhibits 3-sulfino-L-alanine: proton, glutamate antiporter activity (ortholog); acidic amino acid transmembrane transporter activity (ortholog); aspartate:glutamate, proton antiporter activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); glutamate biosynthetic process (ortholog); L-glutamate transmembrane transport (ortholog); PARTICIPATES IN argininosuccinic aciduria pathway; carbamoyl phosphate synthetase I deficiency pathway; citrullinemia pathway; ASSOCIATED WITH Asperger syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955449 3093603 3182513 + 102017288 AGCD01041845;GBCQ01007693;GBDJ01025625;XM_005393225 XP_005393282 MODEL 8911657 protein-coding Snap23 synaptosome associated protein 23 ENCODES a protein that exhibits SNAP receptor activity (ortholog); syntaxin binding (ortholog); INVOLVED IN exocytic insertion of neurotransmitter receptor to postsynaptic membrane (ortholog); exocytosis (ortholog); histamine secretion by mast cell (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; vasopressin signaling pathway; vasopressin signaling pathway via receptor type 2; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN adherens junction (ortholog); azurophil granule (ortholog); cilium (ortholog) NW_004955416 9191123 9225103 + 102022915 AGCD01017080;GBCQ01039038;XM_005381344;XM_013512570;XM_013512571 XP_005381401;XP_013368024;XP_013368025 MODEL 8712782 protein-coding Senp5 SUMO specific peptidase 5 ENCODES a protein that exhibits SUMO-specific endopeptidase activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); schizophrenia (ortholog); FOUND IN postsynaptic cytosol (ortholog); presynaptic cytosol (ortholog) NW_004955420 12943783 12975239 + 102016274 AGCD01020907;AGCD01020908;GBBH01137461;XM_005383146;XM_005383147;XM_005383149;XM_005383150 XP_005383203;XP_005383204;XP_005383206;XP_005383207 MODEL 10188282 ncrna LOC106146984 uncharacterized LOC106146984 NW_004955511 4865427 4869377 - 106146984 AGCD01066538;GBBH01078098;XR_001231677 MODEL 8941692 protein-coding Osm oncostatin M ENCODES a protein that exhibits cytokine activity (ortholog); growth factor activity (ortholog); oncostatin-M receptor binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); meiotic nuclear division (ortholog); negative regulation of hormone secretion (ortholog); PARTICIPATES IN granulocyte-macrophage colony-stimulating factor signaling pathway; interleukin-3 signaling pathway; ASSOCIATED WITH Chloracne (ortholog); contact dermatitis (ortholog); COVID-19 (ortholog) NW_004955455 4510711 4515282 - 102017951 AGCD01045678;GBDK01268707;XM_005396249 XP_005396306 MODEL 8814745 protein-coding Rrh retinal pigment epithelium-derived rhodopsin homolog NW_004955496 460094 473007 - 102028554 AGCD01062228;XM_005406281 XP_005406338 MODEL 9023550 ncrna LOC102011323 uncharacterized LOC102011323 NW_004955422 1718157 1721300 + 102011323 AGCD01022470;GBDF01161787;XR_260843 MODEL 8847500 ncrna LOC102018570 uncharacterized LOC102018570 NW_004955456 15338642 15344744 + 102018570 AGCD01046668;GBDF01041403;XR_001236341;XR_001236342 MODEL 39131572 protein-coding NBDY negative regulator of P-body association 8877786 protein-coding Thoc5 THO complex subunit 5 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN blastocyst development (ortholog); cell morphogenesis (ortholog); monocyte differentiation (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; ASSOCIATED WITH anemia (ortholog); Breast Cancer, Familial (ortholog); breast carcinoma (ortholog); FOUND IN chromosome, telomeric region (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955455 3761933 3795517 - 102008060 AGCD01045650;AGCD01045651;GBCB01056026;XM_005396212;XM_013520426 XP_005396269;XP_013375880 MODEL 8860824 protein-coding Slc38a4 solute carrier family 38 member 4 ENCODES a protein that exhibits alanine:sodium symporter activity (ortholog); amino acid transmembrane transporter activity (ortholog); amino acid:sodium symporter activity (ortholog); INVOLVED IN L-alanine import across plasma membrane (ortholog); L-alanine transmembrane transport (ortholog); L-arginine transmembrane transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; FOUND IN microvillus membrane (ortholog) NW_004955500 5859566 5925084 - 102012776 AGCD01063858;AGCD01063859;AGCD01063860;AGCD01063861;GBCB01056315;XM_005406599;XM_005406600;XM_005406601;XM_013505723 XP_005406656;XP_005406657;XP_005406658;XP_013361177 MODEL 8896414 pseudo LOC102009409 unconventional prefoldin RPB5 interactor 1 pseudogene NW_004955431 245211 246820 + 102009409 AGCD01029861 MODEL 9036605 protein-coding Sptan1 spectrin alpha, non-erythrocytic 1 ENCODES a protein that exhibits protein-containing complex binding (ortholog); spectrin binding (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); autism spectrum disorder (ortholog); autosomal dominant distal hereditary motor neuronopathy 11 (ortholog); FOUND IN cortical cytoskeleton (ortholog); cuticular plate (ortholog); fascia adherens (ortholog) NW_004955570 1016510 1076499 + 102003498 AGCD01074782;AGCD01074783;AGCD01074784;AGCD01074785;GBCB01041320;GBCQ01011066;XM_005413564;XM_005413568;XM_005413569;XM_005413572;XM_005413573;XM_013509402;XM_013509403;XM_013509404 XP_005413621;XP_005413625;XP_005413626;XP_005413629;XP_005413630;XP_013364856;XP_013364857;XP_013364858 MODEL 39131962 snorna SNORD116 Small nucleolar RNA SNORD116 8992053 protein-coding Leprot leptin receptor overlapping transcript ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN negative regulation of growth hormone receptor signaling pathway (ortholog); negative regulation of protein localization to cell surface (ortholog); negative regulation of receptor signaling pathway via JAK-STAT (ortholog); ASSOCIATED WITH congenital disorder of glycosylation It (ortholog); intellectual disability (ortholog); Leptin Receptor Deficiency (ortholog); FOUND IN endosome (ortholog); Golgi apparatus (ortholog) NW_004955423 25250873 25265437 - 102023490 AGCD01024060;GBCE01004869;XM_005385301;XM_013514521;XM_013514522 XP_005385358;XP_013369975;XP_013369976 MODEL 8901407 protein-coding Prkce protein kinase C epsilon ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); actin monomer binding (ortholog); diacylglycerol-dependent, calcium-independent serine/threonine kinase activity (ortholog); INVOLVED IN cell-substrate adhesion (ortholog); cellular response to ethanol (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; interleukin-2 signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); cardiomyopathy (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cell periphery (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955441 12642703 13142396 + 102010309 AGCD01037132;AGCD01037133;AGCD01037134;AGCD01037135;AGCD01037136;AGCD01037137;AGCD01037138;AGCD01037139;AGCD01037140;AGCD01037141;AGCD01037142;GBDI01034881;XM_005390971;XM_013517553;XM_013517554 XP_005391028;XP_013373007;XP_013373008 MODEL 8893517 ncrna LOC102005345 uncharacterized LOC102005345 NW_004955460 7260247 7263228 + 102005345 AGCD01048480;GBDF01208870;XR_263036 MODEL 8839133 protein-coding Rgs3 regulator of G protein signaling 3 PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH bladder disease (ortholog); Experimental Liver Cirrhosis (ortholog); lesion of sciatic nerve (ortholog); FOUND IN nucleus (ortholog); plasma membrane (ortholog) NW_004955419 13918274 14042090 - 102019811 AGCD01020009;GBBH01229198;XM_005382663;XM_005382665;XM_005382666;XM_005382668;XM_005382669;XM_005382670;XM_005382672;XM_005382673;XM_013513122;XM_013513124 XP_005382720;XP_005382722;XP_005382723;XP_005382725;XP_005382726;XP_005382727;XP_005382729;XP_005382730;XP_013368576;XP_013368578 MODEL 8711700 protein-coding LOC102023200 transcription elongation factor A protein-like 5 NW_004955548 416862 420750 - 102023200 AGCD01072331;GBCE01005297;XM_005411979;XM_005411980 XP_005412036;XP_005412037 MODEL 8765624 protein-coding Elp2 elongator acetyltransferase complex subunit 2 ENCODES a protein that exhibits protein kinase binding (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN regulation of receptor signaling pathway via JAK-STAT (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive intellectual developmental disorder 48 (ortholog); autosomal recessive intellectual developmental disorder 58 (ortholog); FOUND IN cytosol (ortholog); elongator holoenzyme complex (ortholog); nucleoplasm (ortholog) NW_004955402 22698817 22742691 + 102009129 AGCD01000609;AGCD01000610;GBDF01125422;XM_005372807;XM_005372808 XP_005372864;XP_005372865 MODEL 8887235 protein-coding Pcnt pericentrin INVOLVED IN brain morphogenesis (ortholog); camera-type eye development (ortholog); cerebellar cortex morphogenesis (ortholog); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); cataract 9 multiple types (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955407 42735078 42835851 + 102019984 AGCD01007895;AGCD01007896;AGCD01007897;GBDF01085715;XM_013505781;XM_013505784;XM_013505789;XM_013505794;XM_013505798 XP_013361235;XP_013361238;XP_013361243;XP_013361248;XP_013361252 MODEL 8936614 protein-coding Snap25 synaptosome associated protein 25 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); lipid binding (ortholog); myosin binding (ortholog); INVOLVED IN associative learning (ortholog); axonogenesis (ortholog); calcium ion-regulated exocytosis of neurotransmitter (ortholog); PARTICIPATES IN insulin secretion pathway; ASSOCIATED WITH ALAGILLE SYNDROME 1 (ortholog); attention deficit hyperactivity disorder (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); axon (ortholog); axonal growth cone (ortholog) NW_004955415 20133361 20218840 + 102023903 AGCD01016485;AGCD01016486;GBDK01292814;XM_005380870;XM_005380871;XM_005380872 XP_005380927;XP_005380928;XP_005380929 MODEL 8887806 protein-coding LOC102003616 spidroin-1-like NW_004955405 39280354 39282100 - 102003616 AGCD01005498;XM_013519522 XP_013374976 MODEL 8923033 protein-coding Osmr oncostatin M receptor ENCODES a protein that exhibits cytokine binding (ortholog); growth factor binding (ortholog); oncostatin-M receptor activity (ortholog); INVOLVED IN oncostatin-M-mediated signaling pathway (ortholog); positive regulation of cell population proliferation (ortholog); response to cytokine (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); external side of plasma membrane (ortholog); oncostatin-M receptor complex (ortholog) NW_004955426 23395286 23465078 + 102019716 AGCD01026643;AGCD01026644;GBBH01172412;XM_013514950;XM_013514951 XP_013370404;XP_013370405 MODEL 8711925 pseudo LOC102010533 olfactory receptor 2B6-like NW_004955576 1225109 1226068 - 102010533 AGCD01075364;XM_005413950 MODEL 8814360 protein-coding Phlda2 pleckstrin homology like domain family A member 2 INVOLVED IN animal organ morphogenesis (ortholog); placenta development (ortholog); regulation of cell migration (ortholog); ASSOCIATED WITH COVID-19 (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog) NW_004955422 14617794 14619595 - 102011671 AGCD01022861;GBDJ01182328;XM_005384213 XP_005384270 MODEL 8831302 pseudo LOC102008273 cytochrome c, somatic pseudogene NW_004955446 3719779 3720140 - 102008273 AGCD01040028 MODEL 8957038 protein-coding Pank2 pantothenate kinase 2 ENCODES a protein that exhibits pantothenate kinase activity (ortholog); INVOLVED IN aerobic respiration (ortholog); angiogenesis (ortholog); coenzyme A biosynthetic process (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); dystonia (ortholog); fundus dystrophy (ortholog); FOUND IN cytosol (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955415 14722951 14752493 + 102003018 AGCD01016308;AGCD01016309;GBDF01118901;XM_005380804;XM_013512190 XP_005380861;XP_013367644 MODEL 8961738 protein-coding Brd10 bromodomain containing 10 ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog) NW_004955434 9904255 9991651 - 102005499 AGCD01032314;AGCD01032315;AGCD01032316;GBCQ01124872;GBDJ01028811;XM_013516351 XP_013371805 MODEL 8782493 protein-coding Plk5 polo like kinase 5 (inactive) ENCODES a protein that exhibits kinase activity (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); defense response to tumor cell (ortholog); DNA damage response (ortholog); ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog) NW_004955495 6415172 6424445 - 102028985 AGCD01062081;GBDJ01030988;XM_005405960;XM_013505279;XM_013505280;XM_013505281;XM_013505282;XM_013505283;XM_013505284;XM_013505285;XM_013505286;XM_013505287;XM_013505288;XM_013505289;XM_013505290 XP_005406017;XP_013360733;XP_013360734;XP_013360735;XP_013360736;XP_013360737;XP_013360738;XP_013360739;XP_013360740;XP_013360741;XP_013360742;XP_013360743;XP_013360744 MODEL 9018215 protein-coding Slf1 SMC5-SMC6 complex localization factor 1 ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN DNA damage response (ortholog); positive regulation of double-strand break repair (ortholog); positive regulation of maintenance of mitotic sister chromatid cohesion (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nuclear inclusion body (ortholog) NW_004955418 17756610 17818552 - 102019915 AGCD01019157;AGCD01019158;GBDK01187313;XM_005382259;XM_005382260;XM_005382261;XM_013512986 XP_005382316;XP_005382317;XP_005382318;XP_013368440 MODEL 9013854 protein-coding Pkd1l2 polycystin-1-like protein 2 ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); familial cold autoinflammatory syndrome 3 (ortholog); giant axonal neuropathy 1 (ortholog) NW_004955522 3877806 3963197 - 102004194 AGCD01068403;AGCD01068404;AGCD01068405;AGCD01068406;AGCD01068407;AGCD01068408;AGCD01068409;AGCD01068410;GBDI01369777;XM_005409357;XM_013507110 XP_005409414;XP_013362564 MODEL 9006776 protein-coding Rap1gap2 RAP1 GTPase activating protein 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN negative regulation of neuron projection development (ortholog); regulation of cell size (ortholog); ASSOCIATED WITH chromosome 15q11.2 deletion syndrome (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955481 296411 537490 - 102029741 AGCD01056784;AGCD01056785;AGCD01056786;AGCD01056787;AGCD01056788;AGCD01056789;AGCD01056790;AGCD01056791;AGCD01056792;GBDF01189289;JN235985;XM_005402558;XM_005402559;XM_005402561;XM_013503470;XM_013503472;XM_013503473;XM_013503475;XM_013503476;XM_013503477;XM_013503478;XM_013503479;XM_013503480;XM_013503481;XM_013503482;XM_013503483;XM_013503484;XR_263755;XR_263756 AEO17026;XP_005402615;XP_005402616;XP_005402618;XP_013358924;XP_013358926;XP_013358927;XP_013358929;XP_013358930;XP_013358931;XP_013358932;XP_013358933;XP_013358934;XP_013358935;XP_013358936;XP_013358937;XP_013358938 MODEL 8842610 protein-coding LOC102018934 neutrophil gelatinase-associated lipocalin-like NW_004955419 346746 382267 - 102018934 AGCD01019577;AGCD01019578;AGCD01019579;AGCD01019580;XM_013513094 XP_013368548 MODEL 8716185 protein-coding Polr2a RNA polymerase II subunit A ENCODES a protein that exhibits core promoter sequence-specific DNA binding (ortholog); DNA binding (ortholog); DNA-directed RNA polymerase activity (ortholog); INVOLVED IN cellular response to oxygen levels (ortholog); DNA-templated transcription termination (ortholog); positive regulation of RNA splicing (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); Developmental Disease (ortholog); FOUND IN euchromatin (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955467 9423540 9447530 - 102011523 AGCD01051511;GBCQ01005514;XM_005399484 XP_005399541 MODEL 153211020 protein-coding PRUNE2 prune homolog 2 with BCH domain 8823245 pseudo LOC102010184 olfactory receptor 5A1-like NW_004955511 3897218 3898125 - 102010184 AGCD01066481 MODEL 8857853 protein-coding Prkcg protein kinase C gamma ENCODES a protein that exhibits calcium,diacylglycerol-dependent serine/threonine kinase activity (ortholog); protein kinase activity (ortholog); protein serine/threonine/tyrosine kinase activity (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); chemosensory behavior (ortholog); innervation (ortholog); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; insulin signaling pathway; ASSOCIATED WITH Animal Disease Models (ortholog); autosomal dominant cerebellar ataxia (ortholog); autosomal recessive spinocerebellar ataxia 14 (ortholog); FOUND IN calyx of Held (ortholog); cell-cell junction (ortholog); cytoplasm (ortholog) NW_004955604 262182 279259 - 102018143 AGCD01076875;GBBH01155679;XM_005414871 XP_005414928 MODEL 8916617 ncrna LOC102012543 uncharacterized LOC102012543 NW_004955421 4876441 4882855 + 102012543 AGCD01021704;GBCQ01090963;XR_001233851 MODEL 8769007 ncrna LOC102015497 uncharacterized LOC102015497 NW_004955413 9351520 9367102 - 102015497 AGCD01013903;XR_260073 MODEL 8949032 protein-coding Tox2 TOX high mobility group box family member 2 ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN female gonad development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); response to gonadotropin (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955445 13210606 13343344 - 102023539 AGCD01039770;AGCD01039771;GBDJ01115968;XM_005392491;XM_005392492;XM_013518387;XM_013518388;XM_013518389 XP_005392548;XP_005392549;XP_013373841;XP_013373842;XP_013373843 MODEL 9032392 protein-coding LOC102011733 cytochrome b-c1 complex subunit 9 ASSOCIATED WITH Breast Cancer, Familial (ortholog); vestibular schwannomatosis (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex III (ortholog) NW_004955455 4013197 4015448 + 102011733 AGCD01045662;GBDF01008630;XM_005396224 XP_005396281 MODEL 8771381 pseudo LOC102007906 vomeronasal type-1 receptor 48-like NW_004955421 21878638 21880909 - 102007906 AGCD01022124;XM_005383931 MODEL 39133418 snrna U4 U4 spliceosomal RNA 8860154 protein-coding Rrm1 ribonucleotide reductase catalytic subunit M1 ENCODES a protein that exhibits disordered domain specific binding (ortholog); identical protein binding (ortholog); purine nucleotide binding (ortholog); INVOLVED IN 2'-deoxyribonucleotide biosynthetic process (ortholog); cell proliferation in forebrain (ortholog); deoxyribonucleotide biosynthetic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); Animal Disease Models (ortholog); Autosomal Recessive Progressive External Ophthalmoplegia with Mitochondrial DNA Deletions 6 (ortholog); FOUND IN cell projection (ortholog); centriolar satellite (ortholog); ciliary basal body (ortholog) NW_004955414 19850523 19904879 + 102012526 AGCD01015339;AGCD01015340;AGCD01015341;GBBH01011845;XM_005380041 XP_005380098 MODEL 8977832 protein-coding LOC102018571 olfactory receptor 6C6-like NW_004955458 2623103 2624062 - 102018571 AGCD01047240;XM_005397496 XP_005397553 MODEL 9062925 pseudo LOC102009413 protein PBDC1 pseudogene NW_004955433 10564178 10564675 + 102009413 AGCD01031632 MODEL 10192217 ncrna LOC106149812 uncharacterized LOC106149812 NW_004955454 3151901 3154071 + 106149812 AGCD01045057;GBDJ01370731;XR_001236227 MODEL 8922919 protein-coding Slc38a5 solute carrier family 38 member 5 ENCODES a protein that exhibits alanine transmembrane transporter activity (ortholog); amino acid transmembrane transporter activity (ortholog); glycine transmembrane transporter activity (ortholog); INVOLVED IN amino acid export across plasma membrane (ortholog); amino acid import across plasma membrane (ortholog); asparagine transmembrane transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); Endotoxemia (ortholog); FOUND IN plasma membrane (ortholog) NW_004955543 15968 24644 - 102017059 AGCD01071554;GBCE01162641;XM_005415372 XP_005415429 MODEL 8715687 protein-coding Rap1gds1 Rap1 GTPase-GDP dissociation stimulator 1 ENCODES a protein that exhibits GTPase regulator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN angiotensin-activated signaling pathway involved in heart process (ortholog); CAAX-box protein maturation (ortholog); cardiac muscle hypertrophy (ortholog); ASSOCIATED WITH ALFADHEL SYNDROME (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); extracellular space (ortholog) NW_004955405 8555117 8708604 + 102019351 AGCD01004747;AGCD01004748;AGCD01004749;AGCD01004750;GBDF01002792;GBDF01002797;XM_013517446;XM_013517447 XP_013372900;XP_013372901 MODEL 8809041 protein-coding Thoc6 THO complex subunit 6 INVOLVED IN central nervous system development (ortholog); mRNA export from nucleus (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; ASSOCIATED WITH Beaulieu-Boycott-Innes Syndrome (ortholog); developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear body (ortholog); nuclear speck (ortholog) NW_004955442 14314100 14317726 - 102007059 AGCD01037810;GBDK01189523;XM_005391375;XM_005391377 XP_005391432;XP_005391434 MODEL 8993167 protein-coding Nbea neurobeachin ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN hematopoietic stem cell homeostasis (ortholog); protein localization (ortholog); regulation of neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Cerebellar, Ocular, Craniofacial, and Genital Syndrome (ortholog); FOUND IN cerebellar Golgi cell to granule cell synapse (ortholog); cytosol (ortholog); endomembrane system (ortholog) NW_004955431 10379061 11017884 - 102004958 AGCD01030205;AGCD01030206;AGCD01030207;AGCD01030208;AGCD01030209;AGCD01030210;AGCD01030211;AGCD01030212;AGCD01030213;AGCD01030214;AGCD01030215;GBBH01155106;GBDF01225800;XM_005387696;XM_005387699;XM_013515835;XM_013515836;XM_013515837;XM_013515838;XM_013515839 XP_005387753;XP_005387756;XP_013371289;XP_013371290;XP_013371291;XP_013371292;XP_013371293 MODEL 9014440 protein-coding LOC102021508 rhox homeobox family member 1-like NW_004955711 3374 5839 - 102021508 AGCD01078141;GBDF01163219;XM_013510180 XP_013365634 MODEL 8904836 protein-coding Trim33 tripartite motif containing 33 ENCODES a protein that exhibits co-SMAD binding (ortholog); promoter-specific chromatin binding (ortholog); R-SMAD binding (ortholog); INVOLVED IN gene expression (ortholog); negative regulation of BMP signaling pathway (ortholog); protein ubiquitination (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH developmental dysplasia of the hip (ortholog); hereditary spastic paraplegia 47 (ortholog); ovarian cancer (ortholog); FOUND IN nucleus (ortholog) NW_004955435 17631596 17750261 - 102029788 AGCD01033362;AGCD01033363;AGCD01033364;GBDK01141829;XM_013516407 XP_013371861 MODEL 8892103 protein-coding Leprotl1 leptin receptor overlapping transcript like 1 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog) NW_004955463 6580294 6585738 + 102007870 AGCD01049685;GBDI01020304;XM_013521532 XP_013376986 MODEL 8873469 ncrna LOC102006789 uncharacterized LOC102006789 NW_004955424 2250910 2258353 + 102006789 AGCD01024265;GBDF01111914;XR_261034 MODEL 8761090 ncrna LOC102005347 uncharacterized LOC102005347 NW_004955411 1520955 1525362 + 102005347 AGCD01011485;GBDF01208789;XR_259910 MODEL 8832926 protein-coding LOC102010535 protein FAM47A-like NW_004955587 258217 259881 - 102010535 AGCD01076061;GBDF01017135;XM_005414446 XP_005414503 MODEL 8973541 protein-coding LOC102024194 chymase NW_004955409 35831686 35834710 + 102024194 AGCD01010434;GBCE01119297;XM_005376994;XM_005376995 XP_005377051;XP_005377052 MODEL 8915235 protein-coding Senp6 SUMO specific peptidase 6 ENCODES a protein that exhibits SUMO-specific endopeptidase activity (ortholog); INVOLVED IN protein desumoylation (ortholog); protein modification by small protein removal (ortholog); regulation of kinetochore assembly (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); Ullrich congenital muscular dystrophy 2 (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); postsynaptic cytosol (ortholog) NW_004955502 4082217 4180696 + 102003042 AGCD01064327;AGCD01064328;AGCD01064329;AGCD01064330;GBDF01157242;GBDI01138539;XM_013505827 XP_013361281 MODEL 8941559 protein-coding Rbpms2 RNA binding protein, mRNA processing factor 2 ENCODES a protein that exhibits identical protein binding (ortholog); mRNA binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN negative regulation of smooth muscle cell differentiation (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); nemaline myopathy 6 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955450 10746708 10770540 + 102009670 AGCD01042634;AGCD01042635;GBCB01088798;XM_013518834 XP_013374288 MODEL 8799638 trna trnM(cat) tRNA-Met MT 3818 3886 + 15822219 9037750 protein-coding Snrpe small nuclear ribonucleoprotein polypeptide E ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); methylosome (ortholog) NW_004955406 39725841 39732527 + 102016018 AGCD01006633;GBDJ01075700;XM_005375279 XP_005375336 MODEL 8965720 protein-coding Wasf3 WASP family member 3 INVOLVED IN cytoskeleton organization (ortholog); lamellipodium assembly (ortholog); modification of postsynaptic actin cytoskeleton (ortholog); ASSOCIATED WITH juvenile rheumatoid arthritis (ortholog); Prostatic Neoplasms (ortholog); FOUND IN glial cell projection (ortholog); glutamatergic synapse (ortholog); lamellipodium (ortholog) NW_004955497 6100633 6190639 + 102028556 AGCD01062622;AGCD01062623;AGCD01062624;AGCD01062625;AGCD01062626;GBDF01158437;XM_005406347;XM_005406348;XM_005406349;XM_005406350 XP_005406404;XP_005406405;XP_005406406;XP_005406407 MODEL 8870052 protein-coding Snap29 synaptosome associated protein 29 INVOLVED IN autophagosome maturation (ortholog); autophagosome membrane docking (ortholog); cilium assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); CEDNIK syndrome (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN autophagosome (ortholog); centrosome (ortholog); ciliary pocket membrane (ortholog) NW_004955442 19419381 19446782 - 102026163 AGCD01038057;AGCD01038058;AGCD01038059;AGCD01038060;GBDF01082896;XM_005391838 XP_005391895 MODEL 8836357 protein-coding Ptp4a3 protein tyrosine phosphatase 4A3 INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); endothelial cell migration (ortholog); Notch signaling pathway (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955454 429051 440328 + 102015689 AGCD01044958;GBDI01229359;XM_005395723;XM_013520280;XM_013520281;XM_013520282 XP_005395780;XP_013375734;XP_013375735;XP_013375736 MODEL 8865621 protein-coding Osr1 odd-skipped related transcription factor 1 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell differentiation (ortholog); cell proliferation involved in kidney development (ortholog); cellular response to retinoic acid (ortholog); FOUND IN cell cortex (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955469 1954470 1961344 - 102010467 AGCD01052265;GBBH01150058;XM_005400337 XP_005400394 MODEL 39131963 snorna SNORD116 Small nucleolar RNA SNORD116 9039941 protein-coding LOC102018572 uncharacterized protein C2orf78-like NW_004955409 22962231 22969880 + 102018572 AGCD01010049;GBDF01047261;XM_005376894;XM_013510259;XR_001232609 XP_005376951;XP_013365713 MODEL 10191538 pseudo LOC106149813 protein mago nashi homolog pseudogene NW_004955454 6383178 6383819 + 106149813 AGCD01045234 MODEL 8793239 protein-coding Phlda3 pleckstrin homology like domain family A member 3 ENCODES a protein that exhibits phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955406 37579006 37582230 - 102016017 AGCD01006576;GBDI01066919;XM_005375183 XP_005375240 MODEL 10385975 ncrna LOC106146985 uncharacterized LOC106146985 NW_004955407 31569920 31581489 + 106146985 AGCD01007654;XR_001231678;XR_001231679 MODEL 8843694 pseudo LOC102006412 uncharacterized LOC102006412 NW_004955450 9656148 9662906 + 102006412 AGCD01042594 MODEL 8858448 protein-coding Slf2 SMC5-SMC6 complex localization factor 2 ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN DNA damage response (ortholog); positive regulation of double-strand break repair (ortholog); positive regulation of maintenance of mitotic sister chromatid cohesion (ortholog); ASSOCIATED WITH genetic disease (ortholog); Mosaic Variegated Aneuploidy Syndrome 5 (ortholog); FOUND IN chromatin (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955485 9221419 9269308 - 102006135 AGCD01058753;AGCD01058754;GBCB01074847;GBCQ01010494;XM_013504054 XP_013359508 MODEL 8897366 protein-coding LOC102018935 translation initiation factor IF-2-like NW_004955485 9778432 9781686 - 102018935 AGCD01058781;GBBH01012083;XM_005403936 XP_005403993 MODEL 9042703 ncrna LOC102023207 uncharacterized LOC102023207 NW_004955444 15292822 15398299 - 102023207 AGCD01039134;AGCD01039135;AGCD01039136;XR_262273 MODEL 8879080 protein-coding LOC102024196 phosphoglycerate mutase 1-like NW_004955462 9673636 9674936 + 102024196 AGCD01049341;XM_013521425 XP_013376879 MODEL 8826588 protein-coding Rgs4 regulator of G protein signaling 4 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GTPase activator activity (ortholog); protein kinase binding (ortholog); INVOLVED IN dorsal root ganglion development (ortholog); negative regulation of cell growth involved in cardiac muscle cell development (ortholog); negative regulation of dopamine receptor signaling pathway (ortholog); PARTICIPATES IN acetylcholine signaling pathway via muscarinic acetylcholine receptor; calcium signaling pathway via the calcium-sensing receptor; dopamine signaling pathway via D1 family of receptors; ASSOCIATED WITH alcohol dependence (ortholog); bladder disease (ortholog); Drug-Induced Dyskinesia (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955462 13340812 13347598 - 102009474 AGCD01049425;GBCQ01144636;XM_005398260;XM_005398261 XP_005398317;XP_005398318 MODEL 9009767 pseudo LOC102012546 ribosome biogenesis protein NSA2 homolog pseudogene NW_004955492 272333 273124 + 102012546 AGCD01060632 MODEL 8888677 protein-coding LOC102003619 tubulin alpha chain-like NW_004955406 36709889 36828026 + 102003619 AGCD01006562;AGCD01006563;AGCD01006564;AGCD01006565;AGCD01006566;AGCD01006567;GBCQ01012688;XM_005375474 XP_005375531 MODEL 8863844 protein-coding Pcnx1 pecanex 1 ASSOCIATED WITH prostate cancer (ortholog) NW_004955523 4100572 4215526 - 102007807 AGCD01068630;AGCD01068631;AGCD01068632;AGCD01068633;GBCQ01096454;XM_013507161;XM_013507162;XM_013507164 XP_013362615;XP_013362616;XP_013362618 MODEL 8927359 ncrna LOC102010941 uncharacterized LOC102010941 NW_004955435 16643784 16657404 - 102010941 AGCD01033336;GBDF01056722;XR_261709 MODEL 8791147 protein-coding Prkch protein kinase C eta ENCODES a protein that exhibits diacylglycerol-dependent, calcium-independent serine/threonine kinase activity (ortholog); enzyme binding (ortholog); protein kinase activity (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); negative regulation of glial cell apoptotic process (ortholog); negative regulation of protein serine/threonine kinase activity (ortholog); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH cerebral infarction (ortholog); obesity (ortholog); substance-related disorder (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955466 8178323 8393446 - 102013069 AGCD01050981;AGCD01050982;AGCD01050983;AGCD01050984;AGCD01050985;AGCD01050986;AGCD01050987;GBBH01024897;GBDF01082374;XM_005399165 XP_005399222 MODEL 8754825 ncrna LOC102007907 uncharacterized LOC102007907 NW_004955491 1073965 1082901 - 102007907 AGCD01060347;GBCB01024533;XR_264032 MODEL 8781001 protein-coding Rab19 RAB19, member RAS oncogene family ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); RASopathy (ortholog); syndactyly (ortholog) NW_004955494 2878562 2885766 - 102021776 AGCD01061452;AGCD01061453;AGCD01061454;GBCQ01072981;XM_005405422 XP_005405479 MODEL 8912273 protein-coding Pank3 pantothenate kinase 3 ENCODES a protein that exhibits acetyl-CoA binding (ortholog); ATP binding (ortholog); pantothenate kinase activity (ortholog); INVOLVED IN coenzyme A biosynthetic process (ortholog); phosphorylation (ortholog); ASSOCIATED WITH immunodeficiency 40 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955408 21630849 21643432 - 102023007 AGCD01008557;GBDK01239308;XM_013509138 XP_013364592 MODEL 39131964 snorna SNORD116 Small nucleolar RNA SNORD116 9064934 protein-coding Nbeal1 neurobeachin like 1 ASSOCIATED WITH autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); common variable immunodeficiency 1 (ortholog) NW_004955457 11671565 11839357 - 102030043 AGCD01046978;AGCD01046979;AGCD01046980;AGCD01046981;AGCD01046982;AGCD01046983;AGCD01046984;AGCD01046985;AGCD01046986;GBDK01008806;XM_013520716;XM_013520717;XM_013520718;XM_013520719;XM_013520720;XM_013520721;XM_013520722;XM_013520723;XM_013520724;XR_001236404 XP_013376170;XP_013376171;XP_013376172;XP_013376173;XP_013376174;XP_013376175;XP_013376176;XP_013376177;XP_013376178 MODEL 9055654 protein-coding Elp3 elongator acetyltransferase complex subunit 3 ENCODES a protein that exhibits acetyltransferase activity (ortholog); phosphorylase kinase regulator activity (ortholog); INVOLVED IN central nervous system development (ortholog); neuron migration (ortholog); positive regulation of cell migration (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Animal Disease Models (ortholog); autosomal dominant nocturnal frontal lobe epilepsy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); elongator holoenzyme complex (ortholog) NW_004955403 50565496 50635226 + 102011270 AGCD01002967;GBDF01124985;XM_005373765;XM_005373767 XP_005373822;XP_005373824 MODEL 8976659 trna trnN(gtt) tRNA-Asn MT 5085 5157 - 15822222 39131370 protein-coding SLF2 SMC5-SMC6 complex localization factor 2 9014866 protein-coding Polr2b RNA polymerase II subunit B ENCODES a protein that exhibits chromatin binding (ortholog); DNA-directed RNA polymerase activity (ortholog); RNA-directed RNA polymerase activity (ortholog); INVOLVED IN transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH Tracheoesophageal Fistula (ortholog); FOUND IN chromosome, telomeric region (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955447 14110182 14150556 - 102023209 AGCD01040979;AGCD01040980;AGCD01040981;AGCD01040982;AGCD01040983;AGCD01040984;AGCD01040985;GBBH01062307;XM_005392864;XM_013518517 XP_005392921;XP_013373971 MODEL 8703787 ncrna LOC102011736 uncharacterized LOC102011736 NW_004955456 6662166 6678865 - 102011736 AGCD01046375;GBDF01041115;XR_001236334 MODEL 8929502 protein-coding LOC102015506 amyloid protein A-like NW_004955414 32956958 32961540 - 102015506 AGCD01015791;GBDI01019735;XM_005380400;XM_005380401;XM_013511904 XP_005380457;XP_005380458;XP_013367358 MODEL 8961650 protein-coding Senp7 SUMO specific peptidase 7 ENCODES a protein that exhibits SUMO-specific endopeptidase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); protein desumoylation (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); postsynaptic cytosol (ortholog) NW_004955427 2925159 3091932 - 102028108 AGCD01026907;AGCD01026908;AGCD01026909;AGCD01026910;AGCD01026911;AGCD01026912;AGCD01026913;AGCD01026914;GBCQ01128169;XM_005386320;XM_013515198;XM_013515199;XM_013515200;XM_013515201;XM_013515202;XM_013515203 XP_005386377;XP_013370652;XP_013370653;XP_013370654;XP_013370655;XP_013370656;XP_013370657 MODEL 8891262 protein-coding LOC102008274 cytochrome P450 3A17-like NW_004955573 1579916 1582530 - 102008274 AGCD01075071;AGCD01075072;GBDI01160800;GBDK01284967;XM_013509483 XP_013364937 MODEL 8708842 protein-coding Pecr peroxisomal trans-2-enoyl-CoA reductase ENCODES a protein that exhibits 2,4-dienoyl-CoA reductase (NADPH) activity (ortholog); signaling receptor binding (ortholog); trans-2-enoyl-CoA reductase (NADPH) activity (ortholog); INVOLVED IN phytol metabolic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrion (ortholog); peroxisome (ortholog) NW_004955453 17059779 17109531 + 102025651 AGCD01044917;AGCD01044918;GBDF01081665;XM_005395692;XM_013519993 XP_005395749;XP_013375447 MODEL 8856559 protein-coding Rrm2 ribonucleotide reductase regulatory subunit M2 ENCODES a protein that exhibits ferric iron binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN 2'-deoxyribonucleotide biosynthetic process (ortholog); blastocyst development (ortholog); deoxyribonucleotide biosynthetic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH Animal Disease Models (ortholog); breast carcinoma (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cytosol (ortholog); nuclear envelope (ortholog); nucleoplasm (ortholog) NW_004955487 5477097 5481422 + 102027988 AGCD01059337;GBDF01120663;XM_005404407 XP_005404464 MODEL 8765822 protein-coding Snap47 synaptosome associated protein 47 INVOLVED IN exocytic insertion of neurotransmitter receptor to postsynaptic membrane (ortholog); long-term synaptic potentiation (ortholog); vesicle-mediated transport in synapse (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); lung non-small cell carcinoma (ortholog); parathyroid carcinoma (ortholog); FOUND IN asymmetric synapse (ortholog); BLOC-1 complex (ortholog); dendrite (ortholog) NW_004955581 486087 525171 - 102017180 AGCD01075675;GBCE01008670;XM_005414246;XM_005414247;XM_013509738;XM_013509740 XP_005414303;XP_005414304;XP_013365192;XP_013365194 MODEL 8982203 protein-coding LOC102003620 keratin-associated protein 14-like NW_004955407 29792800 29793709 - 102003620 AGCD01007615;XM_005375631 XP_005375688 MODEL 9057000 pseudo LOC102010942 2-hydroxyacylsphingosine 1-beta-galactosyltransferase pseudogene NW_004955526 532505 539029 - 102010942 AGCD01069240 MODEL 9062977 protein-coding Osr2 odd-skipped related transciption factor 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); cell differentiation (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH Cohen syndrome (ortholog); endometriosis (ortholog); FOUND IN nucleus (ortholog) NW_004955417 14502450 14510015 + 102012197 AGCD01018208;GBDI01132574;XM_005381853;XM_005381854 XP_005381910;XP_005381911 MODEL 9000326 protein-coding Rap2a RAP2A, member of RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cellular response to xenobiotic stimulus (ortholog); establishment of epithelial cell apical/basal polarity (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly 5 (ortholog); rheumatoid arthritis (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955404 12897518 12936964 - 102018678 AGCD01003477;GBDI01138502;GBDK01273710;XM_005374084 XP_005374141 MODEL 8787961 protein-coding Ptpa protein phosphatase 2 phosphatase activator ENCODES a protein that exhibits ATP binding (ortholog); phosphatase binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN positive regulation of apoptotic process (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); Disease Progression (ortholog); dystonia (ortholog); FOUND IN ATPase complex (ortholog); calcium channel complex (ortholog); cytoplasm (ortholog) NW_004955570 1429316 1454820 + 102015788 AGCD01074814;GBDI01022159;XM_005413611 XP_005413668 MODEL 8868274 protein-coding Pcnx2 pecanex 2 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955492 6043577 6249483 + 102024578 AGCD01060761;AGCD01060762;AGCD01060763;GBDF01151024;XM_013504672 XP_013360126 MODEL 8987140 protein-coding Prkci protein kinase C iota ENCODES a protein that exhibits diacylglycerol-dependent serine/threonine kinase activity (ortholog); diacylglycerol-dependent, calcium-independent serine/threonine kinase activity (ortholog); phospholipid binding (ortholog); INVOLVED IN actin filament organization (ortholog); cell migration (ortholog); cell-cell junction organization (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin signaling pathway; interleukin-1 signaling pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); autistic disorder (ortholog); autosomal dominant dyskeratosis congenita 1 (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); bicellular tight junction (ortholog) NW_004955420 423406 486676 + 102020013 AGCD01020544;GBDF01041815;XM_005382978 XP_005383035 MODEL 8991424 pseudo LOC102005348 60S ribosomal protein L9-like NW_004955464 13057600 13058278 + 102005348 AGCD01050255 MODEL 8945824 protein-coding Letm1 leucine zipper and EF-hand containing transmembrane protein 1 ENCODES a protein that exhibits calcium:proton antiporter activity (ortholog); INVOLVED IN calcium export from the mitochondrion (ortholog); calcium ion transport (ortholog); cristae formation (ortholog); ASSOCIATED WITH cherubism (ortholog); Craniofacial Abnormalities (ortholog); Developmental Disabilities (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955514 1040103 1069297 - 102019836 AGCD01067032;AGCD01067033;AGCD01067034;GBBH01092661;GBDF01155938;XM_013506764 XP_013362218 MODEL 8835382 ncrna LOC102010538 uncharacterized LOC102010538 NW_004955403 1911461 1914126 - 102010538 AGCD01001726;GBDF01042347;XR_259133 MODEL 39131965 snorna SNORD116 Small nucleolar RNA SNORD116 8815066 protein-coding Prx periaxin INVOLVED IN axon ensheathment (ortholog); nerve development (ortholog); peripheral nervous system myelin formation (ortholog); ASSOCIATED WITH Carpenter syndrome 2 (ortholog); cataract (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955578 852789 873319 + 102013026 AGCD01075500;GBDI01262384;XM_005414047;XM_005414049;XM_005414050;XM_005414051;XM_005414053;XM_005414054;XM_013509650;XM_013509651;XM_013509652 XP_005414104;XP_005414106;XP_005414107;XP_005414108;XP_005414110;XP_005414111;XP_013365104;XP_013365105;XP_013365106 MODEL 9040384 protein-coding Phldb1 pleckstrin homology like domain family B member 1 INVOLVED IN basement membrane organization (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); FOUND IN basal cortex (ortholog) NW_004955412 19754997 19800984 + 102013398 AGCD01012977;AGCD01012978;GBCQ01037579;XM_005378253;XM_005378254;XM_005378255;XM_005378256;XM_005378257;XM_005378258;XM_005378259;XM_005378260;XM_005378261;XM_005378262;XM_005378263;XM_005378265;XM_005378268 XP_005378310;XP_005378311;XP_005378312;XP_005378313;XP_005378314;XP_005378315;XP_005378316;XP_005378317;XP_005378318;XP_005378319;XP_005378320;XP_005378322;XP_005378325 MODEL 8814673 pseudo LOC102024197 60 kDa heat shock protein, mitochondrial pseudogene NW_004955410 27911219 27913074 + 102024197 AGCD01011228 MODEL 39133422 snrna U4 U4 spliceosomal RNA 8740500 pseudo LOC102017413 U1 small nuclear ribonucleoprotein C pseudogene NW_004955621 12028 14863 + 102017413 AGCD01077370 MODEL 8854057 protein-coding Sptb spectrin beta, erythrocytic ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); ankyrin binding (ortholog); INVOLVED IN hemopoiesis (ortholog); modification of postsynaptic actin cytoskeleton (ortholog); plasma membrane organization (ortholog); ASSOCIATED WITH anemia (ortholog); Chudley-Mccullough syndrome (ortholog); congenital hemolytic anemia (ortholog); FOUND IN cell surface (ortholog); cortical cytoskeleton (ortholog); cytosol (ortholog) NW_004955466 5013963 5170186 + 102026411 AGCD01050865;AGCD01050866;AGCD01050867;AGCD01050868;GBDF01303785;XM_005399117;XM_013521954;XM_013521955;XM_013521956 XP_005399174;XP_013377408;XP_013377409;XP_013377410 MODEL 8962572 protein-coding Snrpf small nuclear ribonucleoprotein polypeptide F ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); RNA splicing (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); nasopharynx carcinoma (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); methylosome (ortholog) NW_004955405 32236876 32242716 + 102007186 AGCD01005331;GBDJ01079208;XM_005374489 XP_005374546 MODEL 8986472 protein-coding Washc2c WASH complex subunit 2C ENCODES a protein that exhibits phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN endocytic recycling (ortholog); negative regulation of barbed-end actin filament capping (ortholog); protein localization to endosome (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); endosome (ortholog) NW_004955546 2718758 2764277 - 102018987 AGCD01072099;AGCD01072100;GBDI01070765;XM_013508426;XM_013508427;XM_013508428 XP_013363880;XP_013363881;XP_013363882 MODEL 8758239 protein-coding Slc38a6 solute carrier family 38 member 6 ENCODES a protein that exhibits L-glutamate transmembrane transporter activity (ortholog); L-glutamine transmembrane transporter activity (ortholog); FOUND IN plasma membrane (ortholog) NW_004955466 8626193 8679764 - 102014433 AGCD01050995;AGCD01050996;AGCD01050997;GBDI01324016;XM_005399168;XM_005399169;XM_013521932;XM_013521933 XP_005399225;XP_005399226;XP_013377386;XP_013377387 MODEL 8753201 protein-coding Pllp plasmolipin ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN monoatomic ion transport (ortholog); myelin assembly (ortholog); myelination (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN apical plasma membrane (ortholog); compact myelin (ortholog); membrane raft (ortholog) NW_004955433 14896087 14915794 - 102025039 AGCD01031731;AGCD01031732;GBBH01093584;XM_005388384 XP_005388441 MODEL 10222734 protein-coding LOC106149814 uncharacterized LOC106149814 NW_004955406 4855269 4859457 + 106149814 AGCD01005708;GBDJ01356334;XM_013520105;XM_013520110 XP_013375559;XP_013375564 MODEL 8752802 protein-coding Trim35 tripartite motif containing 35 INVOLVED IN innate immune response (ortholog); myeloid cell apoptotic process (ortholog); negative regulation of cell population proliferation (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955403 49821150 49841634 - 102003612 AGCD01002951;GBDK01146352;XM_005373737 XP_005373794 MODEL 8733588 protein-coding LOC102010185 olfactory receptor 4D10-like NW_004955511 4000616 4001551 + 102010185 AGCD01066486;XM_005408269 XP_005408326 MODEL 8777115 protein-coding Pkd2 polycystin 2, transient receptor potential cation channel ENCODES a protein that exhibits actinin binding (ortholog); alpha-actinin binding (ortholog); ATPase binding (ortholog); INVOLVED IN aorta development (ortholog); branching involved in ureteric bud morphogenesis (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); autosomal dominant polycystic kidney disease (ortholog); autosomal recessive polycystic kidney disease (ortholog); FOUND IN basal cortex (ortholog); basal plasma membrane (ortholog); cation channel complex (ortholog) NW_004955474 1831221 1868170 - 102012637 AGCD01054268;GBBH01000984;GBCE01095892;XM_013502757 XP_013358211 MODEL 8871990 pseudo LOC102003621 chromobox protein homolog 3 pseudogene NW_004955455 2292708 2293259 - 102003621 AGCD01045592;XM_005396565 MODEL 8952069 protein-coding LOC102006413 60S ribosomal protein L31-like NW_004955403 19401656 19402305 + 102006413 AGCD01002125;XM_005373402 XP_005373459 MODEL 8981898 protein-coding Ost4 oligosaccharyltransferase complex subunit 4, non-catalytic INVOLVED IN protein N-linked glycosylation via asparagine (ortholog); ASSOCIATED WITH Tatton-Brown-Rahman syndrome (ortholog); FOUND IN oligosaccharyltransferase complex (ortholog); oligosaccharyltransferase complex A (ortholog); oligosaccharyltransferase complex B (ortholog) NW_004955469 9041549 9042949 - 102018176 AGCD01052488;GBDF01005835;XM_005400447 XP_005400504 MODEL 8920668 protein-coding LOC102023216 uncharacterized LOC102023216 NW_004955403 17656915 17673294 - 102023216 AGCD01002084;GBDK01310107;XM_013514765 XP_013370219 MODEL 8821333 protein-coding Snap91 synaptosome associated protein 91 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); clathrin adaptor activity (ortholog); clathrin binding (ortholog); INVOLVED IN axonogenesis (ortholog); chemical synaptic transmission (ortholog); clathrin coat assembly (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; ASSOCIATED WITH Alzheimer's disease (ortholog); immunodeficiency 23 (ortholog); middle cerebral artery infarction (ortholog); FOUND IN axon terminus (ortholog); clathrin-coated vesicle (ortholog); cytosol (ortholog) NW_004955411 11175587 11301145 - 102014541 AGCD01011808;AGCD01011809;AGCD01011810;AGCD01011811;AGCD01011812;AGCD01011813;GBBH01023636;XM_005377690;XM_005377691;XM_013510912;XM_013510914;XM_013510915;XM_013510916;XM_013510917;XM_013510918 XP_005377747;XP_005377748;XP_013366366;XP_013366368;XP_013366369;XP_013366370;XP_013366371;XP_013366372 MODEL 8747588 pseudo LOC102009415 cell division cycle and apoptosis regulator protein 1 pseudogene NW_004955434 8711959 8714535 + 102009415 AGCD01032265 MODEL 8919179 protein-coding Tox3 TOX high mobility group box family member 3 ENCODES a protein that exhibits chromatin binding (ortholog); phosphoprotein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); negative regulation of neuron apoptotic process (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); Liver Neoplasms (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955433 10328886 10426540 - 102022419 AGCD01031627;GBDI01013832;GBDI01325258;XM_005388284;XM_005388285 XP_005388341;XP_005388342 MODEL 8911052 trna trnP(tgg) tRNA-Pro MT 15374 15440 - 15822235 8842726 protein-coding Letm2 leucine zipper and EF-hand containing transmembrane protein 2 ASSOCIATED WITH hereditary spastic paraplegia 54 (ortholog); hypogonadotropic hypogonadism 2 with or without anosmia (ortholog); paraplegia (ortholog); FOUND IN mitochondrion (ortholog) NW_004955463 13990353 14012911 + 102024100 AGCD01049897;GBDF01044235;XM_005398447;XM_005398448;XM_013521513;XM_013521514;XM_013521515 XP_005398504;XP_005398505;XP_013376967;XP_013376968;XP_013376969 MODEL 8878857 protein-coding Slfn11 schlafen family member 11 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); RNA endonuclease activity (ortholog); tRNA binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); defense response to virus (ortholog); DNA damage response (ortholog); ASSOCIATED WITH COVID-19 (ortholog); peroxisome biogenesis disorder 3A (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955481 9885798 9900330 - 102014452 AGCD01057123;AGCD01057124;GBBH01028655;GBDI01086604;XM_013503414 XP_013358868 MODEL 8964967 protein-coding Thoc7 THO complex subunit 7 INVOLVED IN mRNA export from nucleus (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955517 2037406 2046694 + 102020368 AGCD01067614;AGCD01067615;GBDF01082152;GBDI01068250;XM_013506938 XP_013362392 MODEL 8847419 protein-coding LOC102015510 collagen alpha-1(II) chain-like NW_004955415 32621242 32628550 - 102015510 AGCD01016728;GBDJ01008308;XM_005381144 XP_005381201 MODEL 8936907 ncrna LOC102006792 uncharacterized LOC102006792 NW_004955424 19657877 19669500 - 102006792 AGCD01024832;GBBH01074895;XR_001234252;XR_261085 MODEL 8890043 protein-coding LOC102021509 keratin-associated protein 3-3 NW_004955451 15419155 15419938 - 102021509 AGCD01043607;GBDJ01056995;XM_005394379 XP_005394436 MODEL 10262228 protein-coding LOC106146986 putative olfactory receptor 4A4 NW_004955511 33882 42456 - 106146986 AGCD01066308;AGCD01066309;AGCD01066310;AGCD01066311;XM_013506355 XP_013361809 MODEL 8728823 ncrna LOC102007912 uncharacterized LOC102007912 NW_004955495 2955662 2964666 + 102007912 AGCD01061813;GBDF01294554;XR_264137 MODEL 8999377 protein-coding Snrpg small nuclear ribonucleoprotein polypeptide G ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); nasopharynx carcinoma (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); methylosome (ortholog) NW_004955424 14844318 14851720 + 102006149 AGCD01024660;GBCE01100469;XM_005385616 XP_005385673 MODEL 8884892 pseudo LOC102018574 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like NW_004955409 28949729 28974461 - 102018574 AGCD01010248;AGCD01010249 MODEL 8785651 protein-coding LOC102008275 olfactory receptor 2B6-like NW_004955576 1201716 1202654 - 102008275 AGCD01075364;XM_005413943 XP_005414000 MODEL 8845505 protein-coding Senp8 SUMO peptidase family member, NEDD8 specific ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955450 4978767 5001678 - 102005759 AGCD01042487;AGCD01042488;GBDF01278519;XM_005393625 XP_005393682 MODEL 9030604 protein-coding Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B ENCODES a protein that exhibits identical protein binding (ortholog); ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor (ortholog); INVOLVED IN 2'-deoxyribonucleotide biosynthetic process (ortholog); deoxyribonucleoside triphosphate metabolic process (ortholog); deoxyribonucleotide biosynthetic process (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; gemcitabine pharmacodynamics pathway; ASSOCIATED WITH autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 5 (ortholog); Camptocormia (ortholog); chronic progressive external ophthalmoplegia (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955417 26949686 26976976 - 102016594 AGCD01018527;AGCD01018528;GBCC01047005;XM_005381935;XM_005381936;XM_005381937 XP_005381992;XP_005381993;XP_005381994 MODEL 8722859 pseudo LOC102018936 MLN64 N-terminal domain homolog pseudogene NW_004955420 268901 269761 + 102018936 AGCD01020539 MODEL 8810433 protein-coding Rbsn rabenosyn, RAB effector ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); small GTPase binding (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); Golgi to lysosome transport (ortholog); regulation of Golgi organization (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); KARIMINEJAD NEURODEVELOPMENTAL SYNDROME (ortholog); MYELOFIBROSIS, CONGENITAL, WITH ANEMIA, NEUTROPENIA, DEVELOPMENTAL DELAY, AND (ortholog); FOUND IN early endosome (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955429 17444031 17468024 - 102009526 AGCD01028857;GBCB01108995;XM_005387075;XM_005387076;XM_005387077;XM_013515390;XM_013515391;XR_001234494 XP_005387132;XP_005387133;XP_005387134;XP_013370844;XP_013370845 MODEL 10110141 ncrna LOC106149815 uncharacterized LOC106149815 NW_004955454 17131811 17137026 + 106149815 AGCD01045545;AGCD01045546;GBDK01124418;XR_001236229 MODEL 8820372 pseudo LOC102010186 disks large-associated protein 5 pseudogene NW_004955430 21698565 21699103 + 102010186 AGCD01029774 MODEL 9054769 protein-coding Slc25a13 solute carrier family 25 member 13 ENCODES a protein that exhibits 3-sulfino-L-alanine: proton, glutamate antiporter activity (ortholog); acidic amino acid transmembrane transporter activity (ortholog); aspartate:glutamate, proton antiporter activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); ATP biosynthetic process (ortholog); cellular respiration (ortholog); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; ASSOCIATED WITH adult-onset type II citrullinemia (ortholog); Bone Fractures (ortholog); citrullinemia (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955432 12685253 12788307 - 102029430 AGCD01030990;AGCD01030991;AGCD01030992;GBDI01262669;GBDJ01025645;XM_013515919 XP_013371373 MODEL 8856685 protein-coding Prkcq protein kinase C theta ENCODES a protein that exhibits diacylglycerol-dependent serine/threonine kinase activity (ortholog); protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN CD4-positive, alpha-beta T cell proliferation (ortholog); cell chemotaxis (ortholog); intracellular signal transduction (ortholog); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; insulin signaling pathway; ASSOCIATED WITH Crohn's disease (ortholog); Hyperammonemia (ortholog); hyperinsulinism (ortholog); FOUND IN aggresome (ortholog); centriolar satellite (ortholog); cytoplasm (ortholog) NW_004955421 23072607 23151591 - 102005151 AGCD01022171;AGCD01022172;AGCD01022173;GBDI01221492;XM_005383869;XM_013513782 XP_005383926;XP_013369236 MODEL 8741438 protein-coding LOC102006414 uncharacterized LOC102006414 NW_004956036 9 5036 + 102006414 AGCD01078919;XM_005415164 XP_005415221 MODEL 8756228 ncrna LOC102012550 uncharacterized LOC102012550 NW_004955422 29069963 29074568 + 102012550 AGCD01023378;GBDJ01405387;XR_260929 MODEL 8764029 protein-coding Elp4 elongator acetyltransferase complex subunit 4 ENCODES a protein that exhibits phosphorylase kinase regulator activity (ortholog); INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH aniridia (ortholog); aniridia 1 (ortholog); Aniridia 2 (ortholog); FOUND IN cytoplasm (ortholog); elongator holoenzyme complex (ortholog); nucleoplasm (ortholog) NW_004955476 9850110 10054313 + 102025238 AGCD01055400;AGCD01055401;AGCD01055402;AGCD01055403;AGCD01055404;AGCD01055405;AGCD01055406;AGCD01055407;GBDF01160723;XM_005401773;XM_005401774 XP_005401830;XP_005401831 MODEL 9038293 protein-coding Snapc1 small nuclear RNA activating complex polypeptide 1 PARTICIPATES IN RNA polymerase III transcription pathway; FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955466 7953559 7979083 - 102011520 AGCD01050974;AGCD01050975;GBCE01127294;XM_005399162 XP_005399219 MODEL 9050020 protein-coding Brd2 bromodomain containing 2 ENCODES a protein that exhibits acetylation-dependent protein binding (ortholog); histone H3K14ac reader activity (ortholog); histone H4K12ac reader activity (ortholog); INVOLVED IN chromatin looping (ortholog); neural tube closure (ortholog); nucleosome assembly (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH B-cell lymphoma (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); glioblastoma (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nuclear speck (ortholog) NW_004955437 1584890 1592486 + 102024381 AGCD01034219;GBCB01001835;XM_005389461 XP_005389518 MODEL 9042263 protein-coding Polr2c RNA polymerase II subunit C INVOLVED IN transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); Deafness (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955433 15096324 15104435 + 102028888 AGCD01031745;GBCE01074461;XM_005388397 XP_005388454 MODEL 8815183 protein-coding LOC102017415 EF-hand calcium-binding domain-containing protein 12-like NW_004956316 420 4602 - 102017415 AGCD01079421;GBDF01124800;GBDJ01312072;XM_005415194 XP_005415251 MODEL 8853456 protein-coding Rap2b RAP2B, member of RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN establishment of endothelial intestinal barrier (ortholog); microvillus assembly (ortholog); negative regulation of cell migration (ortholog); FOUND IN bicellular tight junction (ortholog); cell-cell contact zone (ortholog); cytosol (ortholog) NW_004955448 4668477 4671629 + 102011822 AGCD01041350;AGCD01041351;GBCE01118185;GBDJ01276338;XM_005393055 XP_005393112 MODEL 8957970 protein-coding LOC102010953 olfactory receptor 5-like NW_004955567 192924 193868 - 102010953 AGCD01074386;XM_005413283 XP_005413340 MODEL 8781509 protein-coding Slc38a7 solute carrier family 38 member 7 ENCODES a protein that exhibits L-asparagine:sodium symporter activity (ortholog); L-glutamine:sodium symporter activity (ortholog); INVOLVED IN asparagine transport (ortholog); glutamine transport (ortholog); sodium ion transport (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); COVID-19 (ortholog); FOUND IN axon (ortholog); lysosomal membrane (ortholog); neuronal cell body (ortholog) NW_004955433 16086747 16100185 - 102016190 AGCD01031785;GBDJ01127120;XM_013516230;XM_013516231 XP_013371684;XP_013371685 MODEL 8778194 protein-coding Rgs5 regulator of G protein signaling 5 INVOLVED IN negative regulation of vascular associated smooth muscle cell proliferation (ortholog); PARTICIPATES IN calcium signaling pathway via the calcium-sensing receptor; G protein mediated signaling pathway via Galphai family; G protein mediated signaling pathway via Galphaq family; ASSOCIATED WITH colorectal adenocarcinoma (ortholog); essential hypertension (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955462 13228110 13288063 + 102008706 AGCD01049422;AGCD01049423;GBDF01305569;XM_005398257;XM_005398258 XP_005398314;XP_005398315 MODEL 8844852 pseudo LOC102011738 TBC1 domain family member 31-like NW_004955407 28180371 28202117 - 102011738 AGCD01007576;AGCD01007577 MODEL 8848384 protein-coding Nbeal2 neurobeachin like 2 INVOLVED IN blood coagulation (ortholog); megakaryocyte development (ortholog); platelet alpha granule organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); gray platelet syndrome (ortholog); hemorrhagic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955420 25184574 25204870 - 102018099 AGCD01021346;GBDF01058055;GBDJ01137916;XM_013513384;XM_013513385;XM_013513386 XP_013368838;XP_013368839;XP_013368840 MODEL 8874983 protein-coding Ptpdc1 protein tyrosine phosphatase domain containing 1 INVOLVED IN cilium assembly (ortholog); smoothened signaling pathway (ortholog); ASSOCIATED WITH hiatus hernia (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955515 3912495 4044999 + 102021161 AGCD01067307;AGCD01067308;AGCD01067309;AGCD01067310;AGCD01067311;AGCD01067312;AGCD01067313;GBDF01081967;XM_005408888;XM_005408890;XM_005408891;XM_005408892;XM_005408894 XP_005408945;XP_005408947;XP_005408948;XP_005408949;XP_005408951 MODEL 8739191 pseudo LOC102024199 eukaryotic translation initiation factor 2 subunit 2 pseudogene NW_004955464 4129161 4130292 + 102024199 AGCD01049984 MODEL 8708006 protein-coding LOC102018938 olfactory receptor 7D4-like NW_004955495 581689 582633 + 102018938 AGCD01061640;XM_005405557 XP_005405614 MODEL 9049353 protein-coding Pkd2l1 polycystin 2 like 1, transient receptor potential cation channel ENCODES a protein that exhibits alpha-actinin binding (ortholog); calcium channel activity (ortholog); calcium ion binding (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); cellular response to pH (ortholog); detection of chemical stimulus involved in sensory perception of sour taste (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN actin cytoskeleton (ortholog); calcium channel complex (ortholog); cation channel complex (ortholog) NW_004955507 6145981 6167152 - 102022313 AGCD01065697;GBDI01264560;XM_005407691;XM_005407692;XM_005407693;XM_005407694;XM_005407695;XM_005407696 XP_005407748;XP_005407749;XP_005407750;XP_005407751;XP_005407752;XP_005407753 MODEL 39131418 protein-coding WASHC3 WASH complex subunit 3 10108911 protein-coding Trnp1 TMF1 regulated nuclear protein 1 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN cerebellar cortex morphogenesis (ortholog); neural precursor cell proliferation (ortholog); regulation of cell cycle (ortholog); FOUND IN euchromatin (ortholog); nucleus (ortholog) NW_004955452 6335463 6341657 + 106149755 AGCD01044105;AGCD01044106;GBBH01186332;GBDF01207830;XM_013519741 XP_013375195 MODEL 9022324 protein-coding Phldb2 pleckstrin homology like domain family B member 2 INVOLVED IN basement membrane organization (ortholog); cell migration (ortholog); establishment of cell polarity (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN basal cortex (ortholog); cell cortex (ortholog); cell leading edge (ortholog) NW_004955427 12284100 12385755 + 102022107 AGCD01027207;AGCD01027208;AGCD01027209;AGCD01027210;AGCD01027211;AGCD01027212;GBCQ01064005;XM_005386372;XM_013515158;XM_013515159;XM_013515160;XM_013515161;XM_013515162 XP_005386429;XP_013370612;XP_013370613;XP_013370614;XP_013370615;XP_013370616 MODEL 8910487 protein-coding LOC102011741 olfactory receptor 12-like NW_004955458 2309459 2310406 + 102011741 AGCD01047223;XM_005397238 XP_005397295 MODEL 8740363 protein-coding Pef1 penta-EF-hand domain containing 1 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); identical protein binding (ortholog); protein dimerization activity (ortholog); INVOLVED IN COPII vesicle coating (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); neural crest cell development (ortholog); FOUND IN COPII vesicle coat (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955452 10038380 10055871 - 102011171 AGCD01044267;AGCD01044268;GBBH01165087;XM_005395031 XP_005395088 MODEL 8699603 protein-coding Pank4 pantothenate kinase 4 (inactive) ENCODES a protein that exhibits pantothenate kinase activity (ortholog); phosphatase activity (ortholog); ASSOCIATED WITH cataract (ortholog); Cataract 49 (ortholog); chromosome 1p36 deletion syndrome (ortholog) NW_004955486 8703236 8716017 + 102006465 AGCD01059154;AGCD01059155;GBBH01065796;XM_005404165;XM_005404166 XP_005404222;XP_005404223 MODEL 9038886 protein-coding LOC102006793 melanoma-associated antigen 10-like NW_004955498 6957142 6971415 - 102006793 AGCD01063139;GBDF01251928;XM_005406437;XM_013505537;XM_013505538 XP_005406494;XP_013360991;XP_013360992 MODEL 8936293 protein-coding Slfn14 schlafen family member 14 ENCODES a protein that exhibits ribosome binding (ortholog); RNA endonuclease activity (ortholog); INVOLVED IN mRNA catabolic process (ortholog); platelet maturation (ortholog); rRNA catabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); hemorrhagic disease (ortholog); peroxisome biogenesis disorder 3A (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955481 10037941 10046549 - 102015406 AGCD01057135;GBBH01083245;XM_005402875 XP_005402932 MODEL 9055526 ncrna LOC102005350 uncharacterized LOC102005350 NW_004955465 6890152 6891671 + 102005350 AGCD01050449;GBCB01123633;XR_263244 MODEL 8912451 trna trnQ(ttg) tRNA-Gln MT 3745 3815 - 15822236 8736415 protein-coding LOC102008276 olfactory receptor 2H1 NW_004955583 74419 75726 + 102008276 AGCD01075793;GBDI01145055;XM_005414287 XP_005414344 MODEL 8844512 protein-coding Brd3 bromodomain containing 3 ENCODES a protein that exhibits histone H3K18cr reader activity (ortholog); histone H3K27cr reader activity (ortholog); histone H3K9cr reader activity (ortholog); INVOLVED IN endodermal cell differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); protein localization to chromatin (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); Kleefstra syndrome 1 (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955513 3145267 3164791 - 102023386 AGCD01066895;AGCD01066896;GBDK01134998;XM_013506673;XM_013506674;XM_013506675;XM_013506676 XP_013362127;XP_013362128;XP_013362129;XP_013362130 MODEL 9051726 protein-coding Pcnx3 pecanex 3 ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog) NW_004955422 19628243 19650163 - 102004720 AGCD01023024;GBCQ01098466;XM_005384474;XM_013513859;XM_013513860;XM_013513861;XM_013513862;XM_013513863;XR_001233888 XP_005384531;XP_013369313;XP_013369314;XP_013369315;XP_013369316;XP_013369317 MODEL 8722068 protein-coding Snrpn small nuclear ribonucleoprotein polypeptide N INVOLVED IN response to hormone (ortholog); ASSOCIATED WITH Angelman syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN nucleoplasm (ortholog); U1 snRNP (ortholog); U2 snRNP (ortholog) NW_004955416 31668789 31674144 + 102023030 AGCD01017768;XM_013512673 XP_013368127 MODEL 8904355 protein-coding Ostc oligosaccharyltransferase complex non-catalytic subunit ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN co-translational protein modification (ortholog); protein N-linked glycosylation via asparagine (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN oligosaccharyltransferase complex (ortholog); oligosaccharyltransferase complex A (ortholog) NW_004955496 1340522 1350060 - 102028435 AGCD01062252;GBDF01080468;XM_005406195 XP_005406252 MODEL 39131966 snorna SNORD116 Small nucleolar RNA SNORD116 8830438 trna trnR(tcg) tRNA-Arg MT 9812 9879 + 15822210 8916034 pseudo LOC102010187 glycerol-3-phosphate acyltransferase 3 pseudogene NW_004955512 1355820 1356600 + 102010187 AGCD01066640 MODEL 9022818 ncrna LOC102011333 uncharacterized LOC102011333 NW_004955424 5069373 5154243 + 102011333 AGCD01024384;GBDF01080540;XR_001234147;XR_261043 MODEL 9021302 pseudo LOC102012551 leucine-rich repeat-containing protein 58 pseudogene NW_004955494 8245217 8247491 + 102012551 AGCD01061581 MODEL 8739743 protein-coding Prkcsh PRKCSH beta subunit of glucosidase II ENCODES a protein that exhibits calcium ion binding (ortholog); phosphoprotein binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); liver development (ortholog); N-glycan processing (ortholog); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog); FOUND IN endoplasmic reticulum (ortholog); glucosidase II complex (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955495 2331075 2338479 + 102023373 AGCD01061767;GBCQ01000664;XM_005405665;XM_013505112 XP_005405722;XP_013360566 MODEL 8743414 protein-coding Rab1a RAB1A, member RAS oncogene family ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); cell migration (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN early endosome (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955424 19393589 19421373 + 102004180 AGCD01024821;AGCD01024822;AGCD01024823;AGCD01024824;AGCD01024825;GBDF01051813;XM_005385692 XP_005385749 MODEL 8897137 protein-coding Nbl1 NBL1, DAN family BMP antagonist ENCODES a protein that exhibits BMP binding (ortholog); identical protein binding (ortholog); morphogen activity (ortholog); INVOLVED IN determination of dorsal identity (ortholog); negative regulation of BMP signaling pathway (ortholog); negative regulation of monocyte chemotaxis (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog); FOUND IN extracellular space (ortholog) NW_004955452 316867 319883 + 102009345 AGCD01043808;GBBH01034798;GBDJ01018829;XM_013519666 XP_013375120 MODEL 8916132 protein-coding Tox4 TOX high mobility group box family member 4 INVOLVED IN positive regulation of transcription elongation by RNA polymerase II (ortholog); RNA polymerase II promoter clearance (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); cone-rod dystrophy 13 (ortholog); purine nucleoside phosphorylase deficiency (ortholog); FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); PTW/PP1 phosphatase complex (ortholog) NW_004955550 2195710 2209729 + 102013344 AGCD01072611;GBDF01045487;XM_005412118;XM_013508582 XP_005412175;XP_013364036 MODEL 8899332 protein-coding Thop1 thimet oligopeptidase 1 ENCODES a protein that exhibits metalloendopeptidase activity (ortholog); peptidase activity (ortholog); peptide binding (ortholog); INVOLVED IN intracellular signal transduction (ortholog); peptide catabolic process (ortholog); peptide metabolic process (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog); RASopathy (ortholog) NW_004955495 5055389 5070710 + 102019711 AGCD01061973;GBDF01128633;XM_005405835 XP_005405892 MODEL 8891192 protein-coding Sptbn1 spectrin beta, non-erythrocytic 1 ENCODES a protein that exhibits ankyrin binding (ortholog); GTPase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); central nervous system development (ortholog); central nervous system formation (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); Bone Fractures (ortholog); DEVELOPMENTAL DELAY, IMPAIRED SPEECH, AND BEHAVIORAL ABNORMALITIES (ortholog); FOUND IN axolemma (ortholog); cortical cytoskeleton (ortholog); cuticular plate (ortholog) NW_004955441 20248578 20378038 + 102005304 AGCD01037400;GBDF01051818;XM_005391031;XM_005391032;XM_005391034;XM_005391035 XP_005391088;XP_005391089;XP_005391091;XP_005391092 MODEL 10209725 pseudo LOC106146987 translocon-associated protein subunit gamma pseudogene NW_004955511 82585 82993 - 106146987 AGCD01066317 MODEL 8818596 protein-coding Pln phospholamban ENCODES a protein that exhibits ATPase inhibitor activity (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN acrosome assembly (ortholog); adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process (ortholog); calcium ion transport (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); cardiac arrest (ortholog); FOUND IN calcium ion-transporting ATPase complex (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955436 1439098 1447070 + 102010626 AGCD01033577;GBDK01316951;XM_005389124 XP_005389181 MODEL 8884980 protein-coding Rrn3 RRN3 homolog, RNA polymerase I transcription factor ENCODES a protein that exhibits RNA polymerase binding (ortholog); RNA polymerase I core promoter sequence-specific DNA binding (ortholog); RNA polymerase I general transcription initiation factor activity (ortholog); INVOLVED IN cytoplasm organization (ortholog); DNA-templated transcription initiation (ortholog); fibroblast proliferation (ortholog); PARTICIPATES IN mTOR signaling pathway; RNA polymerase I transcription pathway; ASSOCIATED WITH autistic disorder (ortholog); epilepsy (ortholog); Parkinson's disease (ortholog); FOUND IN nucleolus (ortholog) NW_004955442 129106 166258 + 102020384 AGCD01037412;AGCD01037413;AGCD01037414;GBCE01046070;XM_005391055;XM_005391058 XP_005391112;XP_005391115 MODEL 8712518 protein-coding LOC102007913 uncharacterized LOC102007913 NW_004955423 26618752 26622551 + 102007913 AGCD01024102;AGCD01024103;GBDF01148474;XM_005385372 XP_005385429 MODEL 39131348 protein-coding RAP2B RAP2B, member of RAS oncogene family 39133271 snrna U4 U4 spliceosomal RNA 8901559 ncrna LOC102023217 uncharacterized LOC102023217 NW_004955403 23531392 23541660 - 102023217 AGCD01002248;GBDJ01026736;XR_259199 MODEL 8828936 protein-coding Washc4 WASH complex subunit 4 INVOLVED IN cognition (ortholog); endolysosomal toll-like receptor signaling pathway (ortholog); endosomal transport (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH autosomal recessive intellectual developmental disorder 43 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN BLOC-1 complex (ortholog); endosome (ortholog); nucleoplasm (ortholog) NW_004955405 39451423 39499295 + 102016230 AGCD01005500;AGCD01005501;GBDF01188550;XM_005374605 XP_005374662 MODEL 8792465 protein-coding Rbx1 ring-box 1 ENCODES a protein that exhibits cullin family protein binding (ortholog); molecular adaptor activity (ortholog); NEDD8 ligase activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to oxidative stress (ortholog); cellular response to UV (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; neddylation pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); nephronophthisis-like nephropathy 1 (ortholog); FOUND IN Cul2-RING ubiquitin ligase complex (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); Cul4-RING E3 ubiquitin ligase complex (ortholog) NW_004955413 26579759 26592980 + 102015096 AGCD01014453;AGCD01014454;GBDF01008494;XM_005379338 XP_005379395 MODEL 8982208 protein-coding Plod1 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 ENCODES a protein that exhibits ferrous iron binding (ortholog); L-ascorbic acid binding (ortholog); peptide binding (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); epidermis development (ortholog); peptidyl-lysine hydroxylation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); Charcot-Marie-Tooth disease type 6 (ortholog); FOUND IN catalytic complex (ortholog) NW_004955486 1967771 1990561 - 102003972 AGCD01058976;AGCD01058977;GBCB01022681;GBDJ01076519;XM_005403978 XP_005404035 MODEL 8874028 pseudo LOC102024200 phosphoglycerate kinase 1-like NW_004955411 34665490 34723313 - 102024200 AGCD01012414;AGCD01012415 MODEL 8941422 protein-coding Snta1 syntrophin alpha 1 ENCODES a protein that exhibits ATPase binding (ortholog); nitric-oxide synthase binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN neuromuscular junction development (ortholog); regulation of heart rate (ortholog); regulation of sodium ion transmembrane transport (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH atrial fibrillation (ortholog); Becker muscular dystrophy (ortholog); Brugada syndrome (ortholog); FOUND IN neuromuscular junction (ortholog); postsynaptic membrane (ortholog); protein-containing complex (ortholog) NW_004955422 27844699 27872104 + 102003779 AGCD01023337;AGCD01023338;AGCD01023339;GBBH01006232;GBDF01306217;XM_013514317 XP_013369771 MODEL 8996108 protein-coding Elp5 elongator acetyltransferase complex subunit 5 INVOLVED IN positive regulation of cell migration (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); elongator holoenzyme complex (ortholog) NW_004955467 9654532 9660035 - 102024204 AGCD01051520;GBDF01005053;XM_005399532;XM_005399533;XM_005399534;XM_013522088 XP_005399589;XP_005399590;XP_005399591;XP_013377542 MODEL 8887224 ncrna LOC102017419 uncharacterized LOC102017419 NW_004955453 8552259 8553217 + 102017419 AGCD01044765;XR_262723 MODEL 8868502 protein-coding Ostf1 osteoclast stimulating factor 1 ENCODES a protein that exhibits SH3 domain binding (ortholog) NW_004955512 3940056 3989892 - 102030457 AGCD01066715;AGCD01066716;GBBH01062764;XM_005408311;XM_013506530;XM_013506531;XM_013506532 XP_005408368;XP_013361984;XP_013361985;XP_013361986 MODEL 8800117 protein-coding Polr2d RNA polymerase II subunit D INVOLVED IN transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH autosomal dominant thrombophilia due to protein C deficiency (ortholog); FOUND IN cytosol (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955459 2687005 2696388 + 102022472 AGCD01047996;GBCE01096350;XM_005397575 XP_005397632 MODEL 8966528 ncrna LOC102010190 uncharacterized LOC102010190 NW_004955520 1134654 1136351 + 102010190 AGCD01068044;GBCQ01105007;XR_001231874;XR_264583 MODEL 8882146 protein-coding LOC102018575 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955460 9790084 9814789 - 102018575 AGCD01048552;AGCD01048553;AGCD01048554;AGCD01048555;GBBH01072462;GBDJ01273101;XM_013521140 XP_013376594 MODEL 8721183 protein-coding Phldb3 pleckstrin homology like domain family B member 3 ENCODES a protein that exhibits enzyme binding (ortholog); ASSOCIATED WITH schizophrenia (ortholog) NW_004955555 1241728 1261531 - 102015777 AGCD01073067;AGCD01073068;GBDI01004272;XM_005412439;XM_013508778;XM_013508779 XP_005412496;XP_013364232;XP_013364233 MODEL 8722393 ncrna LOC102003630 uncharacterized LOC102003630 NW_004955461 9207794 9213408 + 102003630 AGCD01048943;GBDF01222087;XR_001236550;XR_001236551;XR_001236552 MODEL 8742958 protein-coding LOC102010954 leukocyte immunoglobulin-like receptor subfamily A member 5 NW_004955567 1373617 1378077 + 102010954 AGCD01074469;GBBH01148932;GBDK01175825;XM_013509300 XP_013364754 MODEL 8861444 ncrna LOC102008279 uncharacterized LOC102008279 NW_004955450 14296448 14299942 - 102008279 AGCD01042742;GBDF01052413;XR_001235869;XR_001235870 MODEL 8837597 protein-coding Panx1 pannexin 1 ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); ATP transmembrane transporter activity (ortholog); INVOLVED IN ATP transport (ortholog); calcium ion transport (ortholog); cell-cell signaling (ortholog); PARTICIPATES IN neuron-to-neuron signaling pathway via the electrical synapse; ASSOCIATED WITH Acute Liver Failure (ortholog); autosomal recessive polycystic kidney disease (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN bleb (ortholog); endoplasmic reticulum (ortholog); gap junction (ortholog) NW_004955414 405483 448470 - 102018914 AGCD01014726;GBCB01075360;GBDJ01421893;XM_005379682 XP_005379739 MODEL 151707871 protein-coding BRD3OS BRD3 opposite strand 8712453 protein-coding Prxl2a peroxiredoxin like 2A ENCODES a protein that exhibits antioxidant activity (ortholog); INVOLVED IN regulation of osteoclast differentiation (ortholog); FOUND IN cytoplasm (ortholog) NW_004955510 400454 420900 + 102027556 AGCD01066147;AGCD01066148;GBDJ01064130;XM_005407871;XM_005407872;XM_005407873;XM_013506334;XM_013506335 XP_005407928;XP_005407929;XP_005407930;XP_013361788;XP_013361789 MODEL 8789084 protein-coding Rrp1 ribosomal RNA processing 1 ASSOCIATED WITH autistic disorder (ortholog); breast ductal carcinoma (ortholog); cataract 9 multiple types (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog) NW_004955407 41456291 41466040 - 102004040 AGCD01007866;AGCD01007867;GBCB01040692;XM_005375882 XP_005375939 MODEL 9000631 trna trnS1(gct) tRNA-Ser MT 11621 11681 + 15822231 39133272 snrna U4 U4 spliceosomal RNA 8732434 protein-coding Letmd1 LETM1 domain containing 1 ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN ATP biosynthetic process (ortholog); gene expression (ortholog); inflammatory response (ortholog); ASSOCIATED WITH breast cancer (ortholog); ovarian carcinoma (ortholog); renal carcinoma (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nucleolus (ortholog) NW_004955547 1574210 1586432 + 102020847 AGCD01072233;GBDK01185833;XM_005411892;XM_013508469;XM_013508470;XM_013508471;XR_001232222;XR_001232223 XP_005411949;XP_013363923;XP_013363924;XP_013363925 MODEL 8748436 pseudo LOC102021510 60S ribosomal protein L36 pseudogene NW_004955403 57896896 57898033 + 102021510 AGCD01003167;XM_005373867 MODEL 9001065 pseudo LOC102018940 SNW domain-containing protein 1 pseudogene NW_004955423 812801 813554 + 102018940 AGCD01023421 MODEL 8721643 protein-coding Rgs6 regulator of G protein signaling 6 ENCODES a protein that exhibits GTPase activator activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN positive regulation of GTPase activity (ortholog); positive regulation of neuron differentiation (ortholog); PARTICIPATES IN acetylcholine signaling pathway via muscarinic acetylcholine receptor; ASSOCIATED WITH alcohol dependence (ortholog); morphine dependence (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); membrane (ortholog) NW_004955523 2763143 3366851 - 102004846 AGCD01068588;AGCD01068589;AGCD01068590;AGCD01068591;AGCD01068592;AGCD01068593;AGCD01068594;AGCD01068595;AGCD01068596;AGCD01068597;AGCD01068598;AGCD01068599;AGCD01068600;AGCD01068601;AGCD01068602;AGCD01068603;AGCD01068604;AGCD01068605;GBDJ01403741;XM_005409440;XM_005409442;XM_005409443;XM_013507178 XP_005409497;XP_005409499;XP_005409500;XP_013362632 MODEL 8842428 protein-coding Sephs1 selenophosphate synthetase 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); FOUND IN cytoplasm (ortholog); nuclear membrane (ortholog); plasma membrane (ortholog) NW_004955429 20849526 20871074 + 102011347 AGCD01028991;GBDK01092936;XM_005387165;XM_005387168 XP_005387222;XP_005387225 MODEL 8983906 protein-coding LOC102010539 T-complex protein 1 subunit alpha-like NW_004957703 193 1109 - 102010539 AGCD01081099;GBCC01015007;GBDI01244130;XM_005415234 XP_005415291 MODEL 8782842 ncrna LOC102011744 uncharacterized LOC102011744 NW_004955459 4423019 4424874 - 102011744 AGCD01048026;GBDF01144191;XR_263015 MODEL 8787266 protein-coding Rrp12 ribosomal RNA processing 12 homolog PARTICIPATES IN ribosome biogenesis pathway; FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); nucleolus (ortholog) NW_004955507 3520971 3554373 - 102023938 AGCD01065629;AGCD01065630;GBDF01125834;XM_005407598 XP_005407655 MODEL 8738925 pseudo LOC102009416 60S ribosomal protein L13 pseudogene NW_004955435 16416187 16416933 - 102009416 AGCD01033326;XR_261708 MODEL 10346772 protein-coding LOC106146988 olfactory receptor 4C13-like NW_004955511 360348 363838 - 106146988 AGCD01066330;XM_013506356 XP_013361810 MODEL 10089242 ncrna LOC106149816 uncharacterized LOC106149816 NW_004955454 4663254 4674679 - 106149816 AGCD01045126;GBDF01113178;XR_001236230;XR_001236231 MODEL 10234109 protein-coding Slfnl1 schlafen like 1 ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); immunodeficiency 24 (ortholog) NW_004955537 814859 819238 - 106147270 AGCD01070875;XM_013507793;XM_013507794 XP_013363247;XP_013363248 MODEL 8934652 protein-coding Polr2e RNA polymerase II, I and III subunit E INVOLVED IN transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog); Dwarfism (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase I complex (ortholog) NW_004955495 6779557 6788241 + 102012554 AGCD01062093;AGCD01062094;GBDJ01005001;XM_005405996 XP_005406053 MODEL 8916565 ncrna LOC102006417 uncharacterized LOC102006417 NW_004955404 45816780 45821911 + 102006417 AGCD01004453;GBDF01094431;XR_259341 MODEL 8948621 ncrna LOC102007919 uncharacterized LOC102007919 NW_004955501 6607112 6613567 - 102007919 AGCD01064198;GBDF01156852;XR_264255 MODEL 9065152 pseudo LOC102015512 vesicle-associated membrane protein 3-like NW_004955416 10951825 10952960 + 102015512 AGCD01017166 MODEL 39131967 snorna SNORD116 Small nucleolar RNA SNORD116 8722519 protein-coding Rc3h1 ring finger and CCCH-type domains 1 ENCODES a protein that exhibits CCR4-NOT complex binding (ortholog); double-stranded RNA binding (ortholog); miRNA binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); B cell homeostasis (ortholog); lymph node development (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); autoimmune lymphoproliferative syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); P-body (ortholog) NW_004955406 14053122 14123023 - 102010666 AGCD01005956;AGCD01005957;GBCB01000291;XM_005374881;XM_005374883 XP_005374938;XP_005374940 MODEL 8729416 pseudo LOC102006418 biorientation of chromosomes in cell division protein 1 pseudogene NW_004955452 7619927 7620452 - 102006418 AGCD01044178 MODEL 8766111 trna trnS2(tga) tRNA-Ser MT 6876 6944 - 15822205 8845135 protein-coding Plod2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 ENCODES a protein that exhibits procollagen glucosyltransferase activity (ortholog); procollagen-lysine 5-dioxygenase activity (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); hydroxylysine biosynthetic process (ortholog); peptidyl-lysine hydroxylation (ortholog); ASSOCIATED WITH Bone Neoplasms (ortholog); Bruck syndrome (ortholog); Bruck Syndrome 2 (ortholog) NW_004955474 11392163 11473918 + 102020659 AGCD01054622;AGCD01054623;AGCD01054624;GBDF01305945;GBDJ01137009;XM_005401440;XM_005401441 XP_005401497;XP_005401498 MODEL 8744266 ncrna LOC102012556 uncharacterized LOC102012556 NW_004955500 5638086 5640274 - 102012556 AGCD01063847;GBDF01250373;XR_264229 MODEL 9011433 protein-coding LOC102024203 histone H2A type 2-B ASSOCIATED WITH cataract 46 juvenile-onset (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955413 863965 864451 + 102024203 AGCD01013492;GBBH01014684;XM_005378715 XP_005378772 MODEL 9020108 pseudo LOC102017421 glycerol kinase pseudogene NW_004955406 10336361 10338349 - 102017421 AGCD01005856;XM_005374816 MODEL 9012389 ncrna LOC102006794 uncharacterized LOC102006794 NW_004955426 2684376 2772914 - 102006794 AGCD01026053;AGCD01026054;XR_261179 MODEL 8849840 protein-coding Prkcz protein kinase C zeta ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); diacylglycerol-dependent serine/threonine kinase activity (ortholog); insulin receptor substrate binding (ortholog); INVOLVED IN activation of phospholipase D activity (ortholog); activation of protein kinase B activity (ortholog); cell migration (ortholog); PARTICIPATES IN adenosine signaling pathway; angiotensin II signaling pathway; ceramide signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Cardiomegaly (ortholog); chromosome 1p36 deletion syndrome (ortholog); FOUND IN apical cortex (ortholog); apical plasma membrane (ortholog); axon hillock (ortholog) NW_004955486 8947579 9021702 - 102009845 AGCD01059158;GBBH01064694;GBCE01055776;XM_005404177;XM_013504279 XP_005404234;XP_013359733 MODEL 8994392 protein-coding Slc38a8 solute carrier family 38 member 8 INVOLVED IN aspartate metabolic process (ortholog); neuron projection development (ortholog); optic nerve development (ortholog); ASSOCIATED WITH Foveal Hypoplasia (ortholog); foveal hypoplasia 2 (ortholog); genetic disease (ortholog) NW_004955564 233796 252565 + 102021608 AGCD01074192;AGCD01074193;GBDF01041455;XM_005413230 XP_005413287 MODEL 8949221 trna trnT(tgt) tRNA-Thr MT 15303 15370 + 15822215 9048278 protein-coding Rap2c RAP2C, member of RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN establishment of endothelial intestinal barrier (ortholog); microvillus assembly (ortholog); negative regulation of cell migration (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN bicellular tight junction (ortholog); cell-cell contact zone (ortholog); cytoplasm (ortholog) NW_004955473 2709407 2723453 + 102028409 AGCD01053907;GBBH01011809;GBDF01235018;XM_005401215 XP_005401272 MODEL 9014710 ncrna LOC102010958 uncharacterized LOC102010958 NW_004955402 5775147 5790716 - 102010958 AGCD01000140;AGCD01000141;GBDI01357888;XR_259032 MODEL 8810656 protein-coding Snapc2 small nuclear RNA activating complex polypeptide 2 PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 5 (ortholog); mucolipidosis type IV (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955563 1345100 1347593 - 102018780 AGCD01074142;GBCE01033036;XM_005413140;XM_005413141;XM_005413142 XP_005413197;XP_005413198;XP_005413199 MODEL 9045170 protein-coding LOC102008284 protocadherin gamma-B7-like NW_004957427 6 1475 - 102008284 AGCD01080823;GBDF01178990;XM_005415230 XP_005415287 MODEL 9033298 protein-coding Slirp SRA stem-loop interacting RNA binding protein INVOLVED IN flagellated sperm motility (ortholog); mitochondrion organization (ortholog); negative regulation of mitochondrial RNA catabolic process (ortholog); ASSOCIATED WITH mitochondrial encephalomyopathy (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); mitochondrial matrix (ortholog) NW_004955438 1556462 1561561 + 102018768 AGCD01034986;GBDF01046525;XM_005390211 XP_005390268 MODEL 8956572 ncrna LOC102011336 uncharacterized LOC102011336 NW_004955500 5251418 5257274 + 102011336 AGCD01063826;GBDJ01403986;XR_001231513;XR_264228 MODEL 8746147 protein-coding Pkd2l2 polycystin 2 like 2, transient receptor potential cation channel ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955418 2443557 2488860 - 102007768 AGCD01018770;GBDF01088316;XM_013512989;XM_013512990;XM_013512991;XM_013512992;XR_001233530 XP_013368443;XP_013368444;XP_013368445;XP_013368446 MODEL 8783182 protein-coding Washc5 WASH complex subunit 5 INVOLVED IN endosomal transport (ortholog); lysosome organization (ortholog); meiotic spindle assembly (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia (ortholog); hereditary spastic paraplegia 10 (ortholog); FOUND IN early endosome (ortholog); endosome (ortholog); neuronal cell body (ortholog) NW_004955461 145993 199274 - 102028387 AGCD01048791;AGCD01048792;GBCB01089643;XM_005397982;XM_005397983;XM_005397985;XM_013521306;XM_013521307 XP_005398039;XP_005398040;XP_005398042;XP_013376760;XP_013376761 MODEL 8741147 protein-coding Trim36 tripartite motif containing 36 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN acrosome reaction (ortholog); mitotic cytokinesis (ortholog); regulation of cell cycle (ortholog); ASSOCIATED WITH anencephaly (ortholog); Anencephaly 1 (ortholog); autistic disorder (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955408 34909194 34939635 - 102021524 AGCD01008924;GBDF01006446;GBDK01026073;XM_013506978 XP_013362432 MODEL 8911931 protein-coding Nbn nibrin ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); damaged DNA binding (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN blastocyst growth (ortholog); DNA damage checkpoint signaling (ortholog); DNA double-strand break processing (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; homologous recombination pathway of double-strand break repair; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); adenosine deaminase deficiency (ortholog); Alzheimer's disease (ortholog); FOUND IN BRCA1-C complex (ortholog); chromosome, telomeric region (ortholog); Golgi apparatus (ortholog) NW_004955417 6840916 6880479 - 102009606 AGCD01017992;AGCD01017993;AGCD01017994;GBCB01039358;XM_005381758;XM_005381759;XM_005381760;XM_005381761;XM_013512755;XM_013512756 XP_005381815;XP_005381816;XP_005381817;XP_005381818;XP_013368209;XP_013368210 MODEL 39133273 snrna U4 U4 spliceosomal RNA 8808908 ncrna LOC102005351 uncharacterized LOC102005351 NW_004955466 1620912 1640471 + 102005351 AGCD01050714;GBDI01342166;XR_001236819;XR_001236820;XR_263277 MODEL 8949646 ncrna LOC102021515 uncharacterized LOC102021515 NW_004955405 40307846 40312195 - 102021515 AGCD01005512;GBDF01157665;XR_001235929;XR_259451;XR_259452 MODEL 8889560 protein-coding Rc3h2 ring finger and CCCH-type domains 2 ENCODES a protein that exhibits DNA binding (ortholog); double-stranded RNA binding (ortholog); mRNA binding (ortholog); INVOLVED IN B cell homeostasis (ortholog); limb development (ortholog); lung alveolus development (ortholog); FOUND IN cell surface (ortholog); intracellular membrane-bounded organelle (ortholog); membrane (ortholog) NW_004955419 5054288 5103926 + 102003767 AGCD01019781;AGCD01019782;GBDF01192823;XM_005382518;XM_005382519 XP_005382575;XP_005382576 MODEL 8889035 protein-coding Peg10 paternally expressed 10 This gene is thought to have been derived from the Ty3/Gypsy family of retrotransposons. It contains two overlapping open reading frames, RF1 and RF2, and expresses two proteins: a shorter, gag-like protein (with a CCHC-type zinc finger domain) from RF1; and a longer, gag/pol-like fusion protein (with an additional aspartic protease motif) from RF1/RF2 by -1 translational frameshifting (-1 FS). While -1 FS has been observed in RNA viruses and transposons in both prokaryotes and eukaryotes, this gene represents the first example of -1 FS in a eukaryotic cellular gene. This gene is highly conserved across mammalian species and retains the heptanucleotide (GGGAAAC) and pseudoknot elements required for -1 FS. It is expressed in adult and embryonic tissues (most notably in placenta) and reported to have a role in cell proliferation, differentiation, apoptosis and cancer development. Knockout mice lacking this gene showed early embryonic lethality with placental defects, indicating the importance of this gene in embryonic development. [provided by RefSeq, Oct 2014] NW_004955432 11383919 11395313 + 102014815 AGCD01030948;AGCD01030949;GBDF01052012;NM_001291250;NM_001291251 NP_001278179;NP_001278180 REVIEWED 8987338 pseudo LOC102024206 serine/Arginine-related protein 53 pseudogene NW_004955468 1620295 1621668 + 102024206 AGCD01051778 MODEL 8765759 protein-coding Sephs2 selenophosphate synthetase 2 ENCODES a protein that exhibits selenide, water dikinase activity (ortholog); INVOLVED IN selenium compound metabolic process (ortholog); selenocysteine biosynthetic process (ortholog); PARTICIPATES IN selenoamino acid metabolic pathway; ASSOCIATED WITH colorectal adenoma (ortholog); colorectal carcinoma (ortholog); dilated cardiomyopathy (ortholog) NW_004955493 7370869 7373121 - 102014913 AGCD01061184;GBBH01065362;XM_005415295 XP_005415352 MODEL 9015091 protein-coding Rrp15 ribosomal RNA processing 15 homolog ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); Loeys-Dietz syndrome 4 (ortholog); parathyroid carcinoma (ortholog) NW_004955406 260447 295842 - 102006738 AGCD01005614;GBCB01024197;XM_005374704 XP_005374761 MODEL 39133275 snrna U4 U4 spliceosomal RNA 8857191 pseudo LOC102023222 calcineurin B homologous protein 1 pseudogene NW_004955452 13533225 13536269 + 102023222 AGCD01044421 MODEL 8947729 protein-coding Pcnx4 pecanex 4 NW_004955466 9572547 9607544 - 102020785 AGCD01051047;GBCE01188394;XM_005399186;XM_013521992;XM_013521993;XM_013521994 XP_005399243;XP_013377446;XP_013377447;XP_013377448 MODEL 10114777 ncrna LOC106146989 uncharacterized LOC106146989 NW_004955402 10989200 10989977 + 106146989 AGCD01000295;XR_001231682 MODEL 8763459 protein-coding Ptpmt1 protein tyrosine phosphatase mitochondrial 1 ENCODES a protein that exhibits phosphatidylglycerophosphatase activity (ortholog); phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity (ortholog); INVOLVED IN cardiolipin biosynthetic process (ortholog); negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); regulation of intrinsic apoptotic signaling pathway (ortholog); PARTICIPATES IN cardiolipin biosynthetic pathway; glycerophospholipid metabolic pathway; inositol metabolic pathway; ASSOCIATED WITH congenital disorder of glycosylation type IIc (ortholog); intellectual disability (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955422 723236 724761 - 102007132 AGCD01022432;GBBH01076389;GBCQ01018067;XM_005384942 XP_005384999 MODEL 9015405 protein-coding Panx2 pannexin 2 ENCODES a protein that exhibits gap junction channel activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell-cell signaling (ortholog); response to ischemia (ortholog); PARTICIPATES IN neuron-to-neuron signaling pathway via the electrical synapse; ASSOCIATED WITH autism spectrum disorder (ortholog); cholangiocarcinoma (ortholog); chromosome 22q13 duplication syndrome (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog) NW_004955413 33220145 33224241 + 102022806 AGCD01014657;GBCE01072622;GBCE01072623;XM_005379546 XP_005379603 MODEL 8830717 ncrna LOC102015514 uncharacterized LOC102015514 NW_004955478 7571236 7583201 - 102015514 AGCD01055980;AGCD01055981;GBCE01131674;XR_001230846;XR_001230847;XR_263704 MODEL 8990296 protein-coding Trnt1 tRNA nucleotidyl transferase 1 ENCODES a protein that exhibits CCA tRNA nucleotidyltransferase activity (ortholog); CCACCA tRNA nucleotidyltransferase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN mitochondrial tRNA 3'-end processing (ortholog); rescue of stalled ribosome (ortholog); tRNA 3'-terminal CCA addition (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 2 (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955421 10192065 10211527 - 102021249 AGCD01021870;GBBH01037146;XM_005383747;XM_005383748;XM_005383749 XP_005383804;XP_005383805;XP_005383806 MODEL 39131968 snorna SNORD116 Small nucleolar RNA SNORD116 9016154 protein-coding Prkd1 protein kinase D1 ENCODES a protein that exhibits diacylglycerol-dependent serine/threonine kinase activity (ortholog); heat shock protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to angiotensin (ortholog); cellular response to endothelin (ortholog); PARTICIPATES IN insulin-like growth factor signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); Cardiac Fibrosis (ortholog); FOUND IN autophagosome membrane (ortholog); cell cortex (ortholog); cell-cell junction (ortholog) NW_004955409 30554095 30860588 + 102017202 AGCD01010303;AGCD01010304;AGCD01010305;AGCD01010306;GBDJ01386770;XM_013510389;XM_013510390 XP_013365843;XP_013365844 MODEL 8822927 protein-coding LOC102023228 cuticle collagen 1-like NW_004955408 6166588 6168304 - 102023228 AGCD01008164;GBDF01234789;XM_005376169 XP_005376226 MODEL 8956805 protein-coding Sntb1 syntrophin beta 1 ENCODES a protein that exhibits PDZ domain binding (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH head and neck squamous cell carcinoma (ortholog); hereditary multiple exostoses (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN protein-containing complex (ortholog); synapse (ortholog) NW_004955417 25906013 26128134 - 102019501 AGCD01018495;AGCD01018496;AGCD01018497;AGCD01018498;GBDI01120696;XM_013512818 XP_013368272 MODEL 8899223 protein-coding Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ENCODES a protein that exhibits O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN compartment pattern specification (ortholog); marginal zone B cell differentiation (ortholog); negative regulation of Notch signaling pathway involved in somitogenesis (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH genetic disease (ortholog); immunodeficiency 11A (ortholog); Rigidity and Multifocal Seizure Syndrome, Lethal Neonatal (ortholog) NW_004955460 12773975 12784512 - 102014752 AGCD01048664;GBCE01075163;XM_005397874 XP_005397931 MODEL 9068074 ncrna LOC102010191 uncharacterized LOC102010191 NW_004955521 1508637 1515821 + 102010191 AGCD01068187;GBDF01220340;XR_264600;XR_264602 MODEL 8753437 pseudo LOC102011337 transcription elongation factor B polypeptide 1 pseudogene NW_004955502 352527 352808 - 102011337 AGCD01064237;XM_005406918 MODEL 9060925 protein-coding Thpo thrombopoietin ENCODES a protein that exhibits cytokine activity (ortholog); INVOLVED IN cell surface receptor signaling pathway via STAT (ortholog); megakaryocyte development (ortholog); megakaryocyte differentiation (ortholog); ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); aplastic anemia (ortholog); arteriosclerosis obliterans (ortholog); FOUND IN extracellular space (ortholog) NW_004955420 23120828 23128894 + 102017242 AGCD01021227;AGCD01021228;GBDJ01109659;XM_005383308;XM_005383309;XM_005383310;XM_013513327;XM_013513328;XM_013513329 XP_005383365;XP_005383366;XP_005383367;XP_013368781;XP_013368782;XP_013368783 MODEL 8732000 pseudo LOC102003632 60S ribosomal protein L35a pseudogene NW_004955462 10954407 10954736 - 102003632 AGCD01049379;XM_005398243 MODEL 8897076 protein-coding LOC102006419 intestinal-type alkaline phosphatase-like NW_004955453 3542300 3545477 - 102006419 AGCD01044663;AGCD01044664;XM_013519762 XP_013375216 MODEL 8924440 protein-coding Tp53 tumor protein p53 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); ATP-dependent DNA/DNA annealing activity (ortholog); chromatin binding (ortholog); INVOLVED IN positive regulation of outer hair cell apoptotic process; apoptotic process (ortholog); apoptotic signaling pathway (ortholog); PARTICIPATES IN altered p53 signaling pathway; endometrial cancer pathway; non-small cell lung carcinoma pathway; ASSOCIATED WITH Acute Erythroleukemia (ortholog); acute kidney failure (ortholog); acute lymphoblastic leukemia (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955467 9241391 9256716 + 102005455 AGCD01051484;AGCD01051485;GBCQ01124524;XM_005399463;XM_005399464 XP_005399520;XP_005399521 MODEL 8994699 protein-coding Sptbn2 spectrin beta, non-erythrocytic 2 ENCODES a protein that exhibits structural constituent of postsynapse (ortholog); INVOLVED IN adult behavior (ortholog); cellular response to ethanol (ortholog); cerebellar Purkinje cell layer morphogenesis (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal dominant cerebellar ataxia (ortholog); autosomal recessive cerebellar ataxia (ortholog); FOUND IN apical plasma membrane (ortholog); cytosol (ortholog); endosome (ortholog) NW_004955422 18659489 18699338 + 102003663 AGCD01022958;AGCD01022959;GBCE01076820;XM_005384375;XM_005384376;XM_013513886 XP_005384432;XP_005384433;XP_013369340 MODEL 9006180 protein-coding Phlpp1 PH domain and leucine rich repeat protein phosphatase 1 ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN circadian rhythm (ortholog); entrainment of circadian clock (ortholog); hippocampus development (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); epilepsy (ortholog); multiple congenital anomalies-hypotonia-seizures syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955402 46563918 46773349 + 102008802 AGCD01001160;AGCD01001161;AGCD01001162;AGCD01001163;AGCD01001164;AGCD01001165;AGCD01001166;AGCD01001167;GBCE01044666;GBDF01080387;XM_013511215 XP_013366669 MODEL 8980698 protein-coding Slc25a14 solute carrier family 25 member 14 ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); protein homodimerization activity (ortholog); proton transmembrane transporter activity (ortholog); INVOLVED IN inorganic anion transport (ortholog); regulation of cellular response to oxidative stress (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN mitochondrial envelope (ortholog); mitochondrion (ortholog) NW_004955473 4697901 4731688 - 102007006 AGCD01053957;GBCE01089348;XM_005401236;XM_005401237;XM_005401238;XM_005401239;XM_013523087;XM_013523088 XP_005401293;XP_005401294;XP_005401295;XP_005401296;XP_013378541;XP_013378542 MODEL 9026854 protein-coding LOC102011750 interstitial collagenase NW_004955412 5994105 6001239 - 102011750 AGCD01012662;XM_005378615 XP_005378672 MODEL 8989772 protein-coding Rcan1 regulator of calcineurin 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein phosphatase inhibitor activity (ortholog); INVOLVED IN calcineurin-NFAT signaling cascade (ortholog); locomotion involved in locomotory behavior (ortholog); negative regulation of calcineurin-NFAT signaling cascade (ortholog); PARTICIPATES IN calcineurin signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955407 33873427 33951762 - 102027814 AGCD01007714;AGCD01007715;GBBH01172918;XM_005375706 XP_005375763 MODEL 8841891 protein-coding Rrp1b ribosomal RNA processing 1B ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN cellular response to virus (ortholog); negative regulation of GTPase activity (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cataract 9 multiple types (ortholog); developmental and epileptic encephalopathy 30 (ortholog); FOUND IN chromosome (ortholog); euchromatin (ortholog); granular component (ortholog) NW_004955407 38553866 38577547 - 102029706 AGCD01007808;AGCD01007809;GBCB01098102;XM_005375782 XP_005375839 MODEL 8819590 protein-coding LOC102010960 zinc finger protein 154-like NW_004955584 561048 567412 + 102010960 AGCD01075948;GBDF01281692;XM_005414367 XP_005414424 MODEL 8872307 pseudo LOC102018577 cold shock domain-containing protein E1-like NW_004955411 12520079 12522603 + 102018577 AGCD01011850 MODEL 8885489 ncrna LOC102008287 uncharacterized LOC102008287 NW_004955406 43139560 43143818 + 102008287 AGCD01006726;GBDF01122753;XR_259542 MODEL 9054309 protein-coding Elp6 elongator acetyltransferase complex subunit 6 INVOLVED IN apoptotic process (ortholog); autophagosome maturation (ortholog); autophagy (ortholog); ASSOCIATED WITH Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); FOUND IN cytosol (ortholog); elongator holoenzyme complex (ortholog); nucleus (ortholog) NW_004955420 24795416 24807790 + 102013177 AGCD01021332;AGCD01021333;GBDF01253292;XM_005383396;XM_005383397;XM_005383398;XM_005383399 XP_005383453;XP_005383454;XP_005383455;XP_005383456 MODEL 39131970 snorna SNORD116 Small nucleolar RNA SNORD116 8865674 pseudo LOC102012558 non-histone chromosomal protein HMG-17 pseudogene NW_004955426 25793912 25801578 + 102012558 AGCD01026728 MODEL 9049913 ncrna LOC102017423 uncharacterized LOC102017423 NW_004955454 859898 876194 - 102017423 AGCD01044961;GBDF01264436;XR_262763 MODEL 9057896 protein-coding LOC102009418 uncharacterized LOC102009418 NW_004955528 214625 215535 - 102009418 AGCD01069515;XM_005410049 XP_005410106 MODEL 10089875 ncrna LOC106149817 uncharacterized LOC106149817 NW_004955454 6371620 6383063 + 106149817 AGCD01045232;AGCD01045233;AGCD01045234;GBDF01192307;XR_001236232 MODEL 8934461 protein-coding Nbr1 NBR1 autophagy cargo receptor ENCODES a protein that exhibits mitogen-activated protein kinase binding (ortholog); ubiquitin binding (ortholog); INVOLVED IN macroautophagy (ortholog); negative regulation of osteoblast differentiation (ortholog); regulation of bone mineralization (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN autophagosome (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955451 16871091 16896090 + 102030264 AGCD01043711;GBDF01002259;XM_005394497;XM_013519232;XM_013519233 XP_005394554;XP_013374686;XP_013374687 MODEL 8893694 protein-coding Lgals1 galectin 1 ENCODES a protein that exhibits carbohydrate binding (ortholog); identical protein binding (ortholog); lactose binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); cellular response to glucose stimulus (ortholog); maintenance of protein location (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); B-cell lymphoma (ortholog); COVID-19 (ortholog); FOUND IN cell surface (ortholog); cytosol (ortholog); extracellular space (ortholog) NW_004955413 24072086 24075452 + 102008302 AGCD01014347;GBDJ01022968;XM_005379217;XM_005379218;XM_005379219;XM_005379220 XP_005379274;XP_005379275;XP_005379276;XP_005379277 MODEL 8847509 protein-coding Trim37 tripartite motif containing 37 ENCODES a protein that exhibits chromatin binding (ortholog); histone H2AK119 ubiquitin ligase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN aggresome assembly (ortholog); negative regulation of centriole replication (ortholog); negative regulation of gene expression, epigenetic (ortholog); ASSOCIATED WITH Craniofacial Abnormalities (ortholog); Dwarfism (ortholog); Fibrous Dysplasia of Bone (ortholog); FOUND IN aggresome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955451 3839757 4014178 + 102019228 AGCD01043075;AGCD01043076;AGCD01043077;AGCD01043078;AGCD01043079;AGCD01043080;AGCD01043081;AGCD01043082;AGCD01043083;AGCD01043084;AGCD01043085;AGCD01043086;AGCD01043087;XM_005393999;XM_013519212;XM_013519214;XM_013519215;XM_013519216;XM_013519217;XM_013519218;XM_013519219;XM_013519220;XM_013519221 XP_005394056;XP_013374666;XP_013374668;XP_013374669;XP_013374670;XP_013374671;XP_013374672;XP_013374673;XP_013374674;XP_013374675 MODEL 8966311 pseudo LOC102024211 tetraspanin-12-like NW_004955469 7511965 7512635 - 102024211 AGCD01052417 MODEL 8985544 protein-coding Slc38a9 solute carrier family 38 member 9 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); cholesterol binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN amino acid transmembrane transport (ortholog); asparagine transport (ortholog); cellular response to amino acid stimulus (ortholog); ASSOCIATED WITH Liver Neoplasms (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN FNIP-folliculin RagC/D GAP (ortholog); late endosome (ortholog); lysosomal membrane (ortholog) NW_004955446 12042848 12132211 + 102016114 AGCD01040222;AGCD01040223;AGCD01040224;AGCD01040225;GBBH01113101;XM_005392695;XM_013518400;XM_013518401;XM_013518402;XM_013518403;XM_013518404 XP_005392752;XP_013373854;XP_013373855;XP_013373856;XP_013373857;XP_013373858 MODEL 8702991 protein-coding LOC102007924 olfactory receptor 5B12-like NW_004955511 3402858 3403802 + 102007924 AGCD01066460;XM_005408265 XP_005408322 MODEL 8887450 protein-coding Sepsecs Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase ENCODES a protein that exhibits tRNA binding (ortholog); INVOLVED IN selenocysteine incorporation (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); cerebellar hypoplasia (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955443 19759772 19859188 + 102022336 AGCD01038634;AGCD01038635;AGCD01038636;AGCD01038637;GBDF01087437;XM_005392040;XM_005392041;XM_005392042 XP_005392097;XP_005392098;XP_005392099 MODEL 8803571 protein-coding Ostm1 osteoclastogenesis associated transmembrane protein 1 INVOLVED IN osteoclast differentiation (ortholog); transepithelial chloride transport (ortholog); ASSOCIATED WITH autosomal recessive osteopetrosis 5 (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); genetic disease (ortholog); FOUND IN chloride channel complex (ortholog); cytosol (ortholog); lysosomal membrane (ortholog) NW_004955411 33168868 33205452 - 102010461 AGCD01012345;GBDF01125208;XM_005377842 XP_005377899 MODEL 8830561 protein-coding Brd4 bromodomain containing 4 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); chromatin remodeling (ortholog); chromosome segregation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); alopecia (ortholog); autosomal dominant polycystic kidney disease (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); condensed nuclear chromosome (ortholog) NW_004955495 7959033 7989216 + 102009518 AGCD01062173;GBDF01154291;XM_013505125 XP_013360579 MODEL 10159554 protein-coding LOC106146990 olfactory receptor 8H1-like NW_004955511 1070029 1070736 + 106146990 AGCD01066355;XM_013506364 XP_013361818 MODEL 8921944 protein-coding Snapc3 small nuclear RNA activating complex polypeptide 3 PARTICIPATES IN RNA polymerase III transcription pathway; FOUND IN nuclear body (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955434 18275301 18310682 + 102017154 AGCD01032561;AGCD01032562;GBBH01208062;GBCE01115541;XM_013516308;XR_001234798 XP_013371762 MODEL 8911267 protein-coding Panx3 pannexin 3 ENCODES a protein that exhibits calcium channel activity (ortholog); gap junction hemi-channel activity (ortholog); INVOLVED IN cell-cell signaling (ortholog); osteoblast differentiation (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); gap junction (ortholog); plasma membrane (ortholog) NW_004955412 25676286 25684841 + 102010885 AGCD01013170;XM_005378429 XP_005378486 MODEL 8972709 protein-coding Slit1 slit guidance ligand 1 ENCODES a protein that exhibits heparan sulfate proteoglycan binding (ortholog); Roundabout binding (ortholog); INVOLVED IN axon extension involved in axon guidance (ortholog); axon guidance (ortholog); axonogenesis (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); Monomelic Amyotrophy (ortholog); Spinal Cord Injuries (ortholog); FOUND IN extracellular space (ortholog) NW_004955507 3204135 3365319 - 102022625 AGCD01065614;AGCD01065615;AGCD01065616;AGCD01065617;AGCD01065618;AGCD01065619;GBCB01111715;XM_005407596 XP_005407653 MODEL 8725642 protein-coding Rgs7 regulator of G protein signaling 7 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); G-protein beta-subunit binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); negative regulation of G protein-coupled receptor signaling pathway (ortholog); positive regulation of GTPase activity (ortholog); PARTICIPATES IN dopamine signaling pathway via D1 family of receptors; dopamine signaling pathway via D2 family of receptors; G protein mediated signaling pathway via Galphai family; ASSOCIATED WITH Experimental Seizures (ortholog); gastrointestinal stromal tumor (ortholog); Hereditary Leiomyomatosis and Renal Cell Cancer (ortholog); FOUND IN cell tip (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955406 10669127 11127564 + 102019356 AGCD01005869;AGCD01005870;AGCD01005871;AGCD01005872;AGCD01005873;AGCD01005874;AGCD01005875;AGCD01005876;AGCD01005877;AGCD01005878;AGCD01005879;AGCD01005880;AGCD01005881;AGCD01005882;GBCE01084812;GBCE01084814;XM_005374822;XM_005374823;XM_005374824;XM_005374825;XM_005374826;XM_013520541;XM_013520556 XP_005374879;XP_005374880;XP_005374881;XP_005374882;XP_005374883;XP_013375995;XP_013376010 MODEL 8828799 pseudo LOC102011339 actin filament-associated protein 1-like 2 pseudogene NW_004955503 4487948 4488394 + 102011339 AGCD01064669 MODEL 9006042 pseudo LOC102003633 cohesin subunit SA-1 pseudogene NW_004955463 594311 597367 + 102003633 AGCD01049490 MODEL 9059166 protein-coding LOC102005354 T-cell surface glycoprotein YE1/48-like NW_004955413 7520787 7531148 + 102005354 AGCD01013822;GBDK01356301;XM_005378928 XP_005378985 MODEL 8854618 protein-coding Wasl WASP like actin nucleation promoting factor ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament polymerization (ortholog); cell projection assembly (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH atopic dermatitis (ortholog); Chemical and Drug Induced Liver Injury (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN actin cap (ortholog); cell leading edge (ortholog); cytoplasmic vesicle (ortholog) NW_004955479 5167851 5200512 - 102015717 AGCD01056340;GBCQ01037898;XM_005402337 XP_005402394 MODEL 8742137 protein-coding LOC102010200 protein S100-A6-like NW_004955545 34876 36059 - 102010200 AGCD01071760;GBDI01224351;XM_005411403 XP_005411460 MODEL 8898603 protein-coding Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 ENCODES a protein that exhibits iron ion binding (ortholog); metal ion binding (ortholog); procollagen galactosyltransferase activity (ortholog); INVOLVED IN basement membrane assembly (ortholog); cellular response to hormone stimulus (ortholog); collagen fibril organization (ortholog); ASSOCIATED WITH Bone Fragility with Contractures, Arterial Rupture, and Deafness (ortholog); Cerebral Hemorrhage (ortholog); genetic disease (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); endoplasmic reticulum (ortholog); extracellular space (ortholog) NW_004955456 16082424 16090773 + 102023777 AGCD01046689;GBDF01156007;XM_005396861;XM_005396862 XP_005396918;XP_005396919 MODEL 9056221 protein-coding Snapc4 small nuclear RNA activating complex polypeptide 4 ENCODES a protein that exhibits DNA binding (ortholog); RNA polymerase II general transcription initiation factor activity (ortholog); RNA polymerase III general transcription initiation factor activity (ortholog); INVOLVED IN snRNA transcription by RNA polymerase II (ortholog); snRNA transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN snRNA-activating protein complex (ortholog) NW_004955513 4330579 4349136 + 102007045 AGCD01066926;AGCD01066927;GBDJ01136998;XM_005408497;XM_013506645;XM_013506646;XM_013506647;XM_013506648;XM_013506649;XM_013506650;XM_013506651;XM_013506652;XM_013506653;XM_013506654 XP_005408554;XP_013362099;XP_013362100;XP_013362101;XP_013362102;XP_013362103;XP_013362104;XP_013362105;XP_013362106;XP_013362107;XP_013362108 MODEL 8953627 protein-coding Sptbn4 spectrin beta, non-erythrocytic 4 ENCODES a protein that exhibits actin binding (ortholog); ankyrin binding (ortholog); phosphatase binding (ortholog); INVOLVED IN adult behavior (ortholog); adult walking behavior (ortholog); axonogenesis (ortholog); ASSOCIATED WITH Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); Congenital Myopathy with Neuropathy and Deafness (ortholog); FOUND IN axon (ortholog); axon hillock (ortholog); axon initial segment (ortholog) NW_004955578 730916 813740 - 102010957 AGCD01075493;AGCD01075494;AGCD01075495;AGCD01075496;AGCD01075497;AGCD01075498;GBBH01158367;XM_013509644 XP_013365098 MODEL 8988367 pseudo LOC102011759 coiled-coil domain-containing protein 117 pseudogene NW_004955414 22445100 22446162 - 102011759 AGCD01015456 MODEL 8822131 protein-coding LOC102018942 leukotriene-B4 omega-hydroxylase 3-like NW_004955495 7625004 7636072 - 102018942 AGCD01062154;XM_013505064 XP_013360518 MODEL 8703293 protein-coding Rgs7bp regulator of G protein signaling 7 binding protein INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); regulation of postsynaptic membrane potential (ortholog); PARTICIPATES IN dopamine signaling pathway via D1 family of receptors; dopamine signaling pathway via D2 family of receptors; G protein mediated signaling pathway via Galphai family; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); dendritic shaft (ortholog) NW_004955446 4354689 4451269 - 102022648 AGCD01040034;AGCD01040035;AGCD01040036;AGCD01040037;GBDJ01301600;XM_005392636 XP_005392693 MODEL 9008869 protein-coding LOC102015516 prothymosin alpha-like NW_004955416 16038061 16038444 - 102015516 AGCD01017348;XM_005381702 XP_005381759 MODEL 8951897 protein-coding Ptpn1 protein tyrosine phosphatase non-receptor type 1 ENCODES a protein that exhibits enzyme binding (ortholog); ephrin receptor binding (ortholog); insulin receptor binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cellular response to angiotensin (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; insulin signaling pathway; insulin-like growth factor signaling pathway; ASSOCIATED WITH B-cell lymphoma (ortholog); Calcification of Aortic Valve (ortholog); Carotid Artery Injuries (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of endoplasmic reticulum membrane (ortholog); cytosol (ortholog) NW_004955445 7754313 7819229 - 102025630 AGCD01039551;AGCD01039552;GBDF01190580;XM_005392314;XM_005392315;XM_005392316 XP_005392371;XP_005392372;XP_005392373 MODEL 9017465 trna trnV(tac) tRNA-Val MT 1021 1087 + 15822216 8771415 protein-coding Septin1 septin 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN meiotic metaphase chromosome alignment (ortholog); spindle assembly involved in female meiosis (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN meiotic spindle (ortholog); midbody (ortholog) NW_004955493 7304472 7309022 - 102013424 AGCD01061177;AGCD01061178;GBDJ01178079;XM_005405254;XM_005405255;XM_005405257;XM_013504780 XP_005405311;XP_005405312;XP_005405314;XP_013360234 MODEL 8788209 protein-coding Prkd2 protein kinase D2 ENCODES a protein that exhibits protein kinase activity (ortholog); protein kinase C binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN cellular response to vascular endothelial growth factor stimulus (ortholog); intracellular signal transduction (ortholog); peptidyl-serine phosphorylation (ortholog); ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); long QT syndrome 1 (ortholog); polycystic ovary syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955574 723933 750794 - 102029242 AGCD01075126;GBBH01116301;XM_005413839;XM_005413841;XM_013509567;XM_013509568 XP_005413896;XP_005413898;XP_013365021;XP_013365022 MODEL 9014271 ncrna LOC102006421 uncharacterized LOC102006421 NW_004955455 10924743 10925491 + 102006421 AGCD01045967;GBDF01002624;XR_262854 MODEL 9049961 protein-coding Peg3 paternally expressed 3 INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of gene expression (ortholog); ASSOCIATED WITH cholangiocarcinoma (ortholog); Parasitic Liver Diseases (ortholog); FOUND IN autophagosome (ortholog); nucleus (ortholog) NW_004955567 85913 96236 + 102019214 AGCD01074378;AGCD01074379;AGCD01074380;GBBH01139572;GBCE01188438;XM_013509239 XP_013364693 MODEL 9004019 pseudo LOC102017431 protein BTG3-like NW_004955410 10869770 10874320 - 102017431 AGCD01010799 MODEL 8772237 protein-coding Thra thyroid hormone receptor alpha ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN adrenal gland development (ortholog); animal organ morphogenesis (ortholog); cartilage condensation (ortholog); ASSOCIATED WITH breast cancer (ortholog); congenital nongoitrous hypothyroidism 6 (ortholog); Diaphragmatic Hernia (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955451 14731746 14743545 + 102009675 AGCD01043569;AGCD01043570;GBCB01002160;XM_005394347 XP_005394404 MODEL 8905022 pseudo LOC102009420 proteasome assembly chaperone 2 pseudogene NW_004955536 716838 717352 + 102009420 AGCD01070737 MODEL 39133277 snrna U4 U4 spliceosomal RNA 8711447 protein-coding Rab1b RAB1B, member RAS oncogene family ENCODES a protein that exhibits GTP binding (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); establishment of endothelial intestinal barrier (ortholog); Golgi organization (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog); phagophore assembly site membrane (ortholog) NW_004955422 19039741 19047088 - 102017133 AGCD01022973;GBDJ01003487;XM_005384425 XP_005384482 MODEL 8972892 protein-coding Prxl2b peroxiredoxin like 2B ENCODES a protein that exhibits oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (ortholog); prostaglandin F synthase activity (ortholog); thioredoxin peroxidase activity (ortholog); INVOLVED IN prostaglandin biosynthetic process (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); dilated cardiomyopathy 1LL (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955486 8663708 8666369 - 102004825 AGCD01059153;GBBH01145866;XM_005404161 XP_005404218 MODEL 8984391 ncrna LOC102005357 uncharacterized LOC102005357 NW_004955413 23947369 23962983 + 102005357 AGCD01014341;AGCD01014342;AGCD01014343;GBCQ01160344;XR_260102 MODEL 9036338 protein-coding Pcolce procollagen C-endopeptidase enhancer ENCODES a protein that exhibits collagen binding (ortholog); heparin binding (ortholog); peptidase activator activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); proteolysis (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); liver cirrhosis (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955573 299443 304672 - 102020730 AGCD01074973;GBDK01183556;XM_005413718;XM_013509473 XP_005413775;XP_013364927 MODEL 8898630 protein-coding Rapgef1 Rap guanine nucleotide exchange factor 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); blood vessel development (ortholog); canonical Wnt signaling pathway (ortholog); PARTICIPATES IN c-Jun N-terminal kinases MAPK signaling pathway; E-cadherin signaling pathway; erythropoietin signaling pathway; ASSOCIATED WITH anti-basement membrane glomerulonephritis (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955513 1224418 1328176 - 102024834 AGCD01066849;AGCD01066850;AGCD01066851;GBDK01129240;XM_013506678;XM_013506679;XM_013506680;XM_013506681;XM_013506682;XM_013506683;XM_013506684;XM_013506685 XP_013362132;XP_013362133;XP_013362134;XP_013362135;XP_013362136;XP_013362137;XP_013362138;XP_013362139 MODEL 8869137 protein-coding Slc39a1 solute carrier family 39 member 1 ENCODES a protein that exhibits signaling receptor binding (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN embryonic cranial skeleton morphogenesis (ortholog); in utero embryonic development (ortholog); limb development (ortholog); ASSOCIATED WITH dyschromatosis symmetrica hereditaria (ortholog); GAND syndrome (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN plasma membrane (ortholog) NW_004955545 556210 559732 - 102024613 AGCD01071800;GBDK01075053;XM_005411458;XM_013508228 XP_005411515;XP_013363682 MODEL 10101744 ncrna LOC106146991 uncharacterized LOC106146991 NW_004955407 28546571 28573832 - 106146991 AGCD01007589;XR_001231680 MODEL 8714362 pseudo LOC102023232 transcription termination factor 1, mitochondrial-like NW_004955458 5088372 5089612 + 102023232 AGCD01047452 MODEL 8950005 pseudo LOC102010540 Golgi apparatus membrane protein TVP23 homolog B pseudogene NW_004955403 54262808 54264290 + 102010540 AGCD01003090 MODEL 8835420 protein-coding LOC102010962 small proline-rich protein 3-like NW_004955592 393237 394484 - 102010962 AGCD01076311;GBDI01016409;XM_005414615 XP_005414672 MODEL 39131379 protein-coding SNTB2 syntrophin beta 2 9007009 protein-coding LOC102008288 keratin-associated protein 20-2-like NW_004955407 30178341 30178529 + 102008288 AGCD01007628;XM_005375644 XP_005375701 MODEL 8711878 pseudo LOC102006795 nuclear receptor subfamily 5 group A member 2 pseudogene NW_004955503 337968 338545 + 102006795 AGCD01064497 MODEL 8791414 pseudo LOC102021516 chromodomain Y-like protein pseudogene NW_004955405 15378726 15379619 + 102021516 AGCD01004944 MODEL 9060584 trna trnW(tca) tRNA-Trp MT 4942 5010 + 15822204 8983754 protein-coding Paox polyamine oxidase ENCODES a protein that exhibits polyamine oxidase activity (ortholog); INVOLVED IN polyamine catabolic process (ortholog); positive regulation of spermidine biosynthetic process (ortholog); putrescine biosynthetic process (ortholog); PARTICIPATES IN polyamine metabolic pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); distal 10q deletion syndrome (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN peroxisomal matrix (ortholog) NW_004955477 11028488 11038556 + 102006029 AGCD01055714;GBDI01229659;XM_005402069 XP_005402126 MODEL 10164933 ncrna LOC106149818 uncharacterized LOC106149818 NW_004955454 5774066 5775083 - 106149818 AGCD01045187;GBDF01276551;XR_001236236 MODEL 8820415 protein-coding Slc25a15 solute carrier family 25 member 15 ENCODES a protein that exhibits antiporter activity (ortholog); L-arginine transmembrane transporter activity (ortholog); L-lysine transmembrane transporter activity (ortholog); INVOLVED IN L-arginine transmembrane transport (ortholog); L-lysine transmembrane transport (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; argininosuccinic aciduria pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); Cardiac Arrhythmias (ortholog); citrullinemia (ortholog); FOUND IN mitochondrion (ortholog) NW_004955431 5673207 5691615 - 102012116 AGCD01030038;GBCQ01031607;GBDF01083462;XM_013515895 XP_013371349 MODEL 9019370 protein-coding Polr2f RNA polymerase II, I and III subunit F INVOLVED IN transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Charcot-Marie-Tooth disease (ortholog); Deafness (ortholog); FOUND IN fibrillar center (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955413 24300340 24309798 + 102013404 AGCD01014360;GBDF01005505;XM_005379236 XP_005379293 MODEL 8703700 protein-coding Ptpn11 protein tyrosine phosphatase non-receptor type 11 ENCODES a protein that exhibits cadherin binding (ortholog); cell adhesion molecule binding (ortholog); D1 dopamine receptor binding (ortholog); INVOLVED IN atrioventricular canal development (ortholog); axonogenesis (ortholog); Bergmann glial cell differentiation (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; erythropoietin signaling pathway; fibroblast growth factor signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); acute promyelocytic leukemia (ortholog); adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955482 8934734 9031230 + 102009502 AGCD01057558;AGCD01057559;AGCD01057560;GBDF01081705;XM_005403196;XM_005403197;XM_005403198;XM_013503715;XM_013503717 XP_005403253;XP_005403254;XP_005403255;XP_013359169;XP_013359171 MODEL 8710554 protein-coding Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN hippocampus development (ortholog); protein dephosphorylation (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955484 4353950 4419891 - 102012539 AGCD01058210;AGCD01058211;AGCD01058212;GBCE01149912;GBDF01195815;XM_013503948 XP_013359402 MODEL 8701661 pseudo LOC102007925 calmodulin-A pseudogene NW_004955430 14879789 14880358 + 102007925 AGCD01029580;XM_005387538 MODEL 8922348 pseudo LOC102024212 ubiquitin-fold modifier 1 pseudogene NW_004955470 1453839 1454161 + 102024212 AGCD01052641;XM_005400594 MODEL 8837894 protein-coding Trim40 tripartite motif containing 40 INVOLVED IN negative regulation of cell growth (ortholog); negative regulation of NF-kappaB transcription factor activity (ortholog); negative regulation of protein catabolic process (ortholog); ASSOCIATED WITH irritant dermatitis (ortholog); megacolon (ortholog); FOUND IN IkappaB kinase complex (ortholog) NW_004955583 242054 260565 + 102029573 AGCD01075807;AGCD01075808;GBDF01180385;XM_005414342 XP_005414399 MODEL 8820444 protein-coding Ostn osteocrin ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); endochondral bone growth (ortholog); hormone-mediated signaling pathway (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN extracellular space (ortholog) NW_004955420 16994447 17035576 - 102014051 AGCD01021012;GBCB01060561;XM_013513489 XP_013368943 MODEL 8914360 protein-coding Pkdcc protein kinase domain containing, cytoplasmic ENCODES a protein that exhibits non-membrane spanning protein tyrosine kinase activity (ortholog); protein kinase activity (ortholog); INVOLVED IN bone mineralization (ortholog); embryonic digestive tract development (ortholog); limb morphogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Lynch syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN extracellular region (ortholog); Golgi apparatus (ortholog) NW_004955441 9462530 9471446 + 102020720 AGCD01037022;GBCB01022196;GBDJ01006435;XM_005390915 XP_005390972 MODEL 8740017 pseudo LOC102011763 40S ribosomal protein S24 pseudogene NW_004955478 9920867 9921511 - 102011763 AGCD01056109 MODEL 8976319 ncrna LOC102018579 uncharacterized LOC102018579 NW_004955412 17854861 17864100 - 102018579 AGCD01012919;GBDF01209681;XR_259997 MODEL 8816755 pseudo LOC102015517 60S ribosomal protein L17 pseudogene NW_004955417 26639628 26640154 - 102015517 AGCD01018514 MODEL 9044779 pseudo LOC102023239 40S ribosomal protein S18 pseudogene NW_004955410 25328235 25339663 - 102023239 AGCD01011150 MODEL 10170948 protein-coding LOC106146992 olfactory receptor 8K3-like NW_004955511 1284850 1285626 + 106146992 AGCD01066362;XM_013506370 XP_013361824 MODEL 8816956 protein-coding LOC102024213 olfactory receptor 52A5-like NW_004955414 20781739 20782683 - 102024213 AGCD01015389;XM_005380067 XP_005380124 MODEL 8707675 ncrna LOC102003635 uncharacterized LOC102003635 NW_004955412 994166 1000278 + 102003635 AGCD01012505;GBDF01113084;XR_259960 MODEL 8794002 protein-coding Elspbp1 epididymal sperm binding protein 1 NW_004955609 227424 241987 - 102011266 AGCD01077054;XM_005414929;XM_013510121 XP_005414986;XP_013365575 MODEL 8853523 ncrna LOC102012559 uncharacterized LOC102012559 NW_004955427 8687167 8694960 + 102012559 AGCD01027076;GBDF01110884;XR_001234415;XR_261242 MODEL 9001392 protein-coding Tp53bp1 tumor protein p53 binding protein 1 ENCODES a protein that exhibits damaged DNA binding (ortholog); histone H4K20me2 reader activity (ortholog); histone reader activity (ortholog); INVOLVED IN cellular response to X-ray (ortholog); DNA damage response (ortholog); DNA repair (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH Bloom syndrome (ortholog); Breast Neoplasms (ortholog); Colonic Neoplasms (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); DNA repair complex (ortholog) NW_004955416 9962736 10035433 - 102005138 AGCD01017100;AGCD01017101;AGCD01017102;AGCD01017103;GBBH01227232;XM_005381379;XM_005381380;XM_005381381;XM_005381382;XM_005381383 XP_005381436;XP_005381437;XP_005381438;XP_005381439;XP_005381440 MODEL 8744823 protein-coding Septin10 septin 10 ASSOCIATED WITH COVID-19 (ortholog); FOUND IN sperm annulus (ortholog); sperm flagellum (ortholog) NW_004955470 12647145 12697616 - 102011648 AGCD01052935;AGCD01052936;GBCQ01097624;GBCQ01097637;XM_005415243;XM_013522808;XM_013522809 XP_005415300;XP_013378262;XP_013378263 MODEL 8821411 pseudo LOC102017433 ubiquitin-conjugating enzyme E2 L3 pseudogene NW_004955464 6709208 6710115 - 102017433 AGCD01050038 MODEL 8952870 protein-coding Ncald neurocalcin delta ENCODES a protein that exhibits actin binding (ortholog); alpha-tubulin binding (ortholog); clathrin binding (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); regulation of systemic arterial blood pressure (ortholog); ASSOCIATED WITH Cohen syndrome (ortholog); COVID-19 (ortholog) NW_004955417 26535859 26885944 - 102015843 AGCD01018514;AGCD01018515;AGCD01018516;AGCD01018517;AGCD01018518;AGCD01018519;AGCD01018520;GBCQ01034248;XM_005381932;XM_005381933;XM_005381934;XM_013512737;XM_013512738;XM_013512739;XM_013512740;XM_013512741;XM_013512742 XP_005381989;XP_005381990;XP_005381991;XP_013368191;XP_013368192;XP_013368193;XP_013368194;XP_013368195;XP_013368196 MODEL 8910135 protein-coding Lgals12 galectin 12 ENCODES a protein that exhibits lactose binding (ortholog); INVOLVED IN intrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN mitochondrion (ortholog); nucleus (ortholog) NW_004955599 248058 261697 + 102029251 AGCD01076636;GBDF01085127;XM_005414746;XM_013510064;XM_013510066;XM_013510067;XM_013510068 XP_005414803;XP_013365518;XP_013365520;XP_013365521;XP_013365522 MODEL 9045561 protein-coding Plp1 proteolipid protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); structural constituent of myelin sheath (ortholog); INVOLVED IN AMPA selective glutamate receptor signaling pathway (ortholog); astrocyte development (ortholog); axon development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); autosomal recessive nonsyndromic deafness 9 (ortholog); FOUND IN integrin alphav-beta3 complex (ortholog); myelin sheath (ortholog); plasma membrane (ortholog) NW_004955548 781522 797246 + 102028341 AGCD01072341;GBDK01179399;XM_005411997;XM_005411998 XP_005412054;XP_005412055 MODEL 9042883 protein-coding Rcan2 regulator of calcineurin 2 INVOLVED IN calcineurin-NFAT signaling cascade (ortholog); locomotion involved in locomotory behavior (ortholog); Notch signaling pathway (ortholog) NW_004955437 11243195 11406488 - 102004320 AGCD01034572;AGCD01034573;AGCD01034574;GBDF01044432;XM_005389848;XM_005389850;XM_005389852;XM_005389853;XM_005389854;XM_005389855 XP_005389905;XP_005389907;XP_005389909;XP_005389910;XP_005389911;XP_005389912 MODEL 8877860 protein-coding Brd7 bromodomain containing 7 ENCODES a protein that exhibits histone binding (ortholog); histone H3K14ac reader activity (ortholog); p53 binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of G1/S transition of mitotic cell cycle (ortholog); regulation of mitotic cell cycle (ortholog); PARTICIPATES IN histone modification pathway; SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); colorectal carcinoma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955433 8425976 8462431 - 102008761 AGCD01031593;AGCD01031594;GBBH01166493;GBCB01024456;XM_013516217 XP_013371671 MODEL 8761538 pseudo LOC102018943 60S ribosomal protein L36a-like NW_004955424 12515538 12515906 - 102018943 AGCD01024613;XR_261058 MODEL 8712820 protein-coding Papln papilin, proteoglycan like sulfated glycoprotein ASSOCIATED WITH intellectual disability (ortholog); FOUND IN basement membrane (ortholog) NW_004955523 2077496 2104826 - 102017377 AGCD01068556;AGCD01068557;GBBH01004337;XM_013507154;XM_013507155;XM_013507156;XM_013507157;XM_013507158 XP_013362608;XP_013362609;XP_013362610;XP_013362611;XP_013362612 MODEL 8925462 protein-coding Polr2g RNA polymerase II subunit G INVOLVED IN transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase II, core complex (ortholog) NW_004955599 469233 471761 - 102008278 AGCD01076651;GBDI01120679;XM_005414767 XP_005414824 MODEL 8787425 protein-coding Pcolce2 procollagen C-endopeptidase enhancer 2 ENCODES a protein that exhibits collagen binding (ortholog); heparin binding (ortholog); peptidase activator activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog) NW_004955508 3058789 3132050 + 102028116 AGCD01065804;AGCD01065805;GBDI01081589;XM_013506286 XP_013361740 MODEL 8720601 pseudo LOC102018945 LIM domain only protein 3 pseudogene NW_004955498 2522907 2523749 + 102018945 AGCD01062802 MODEL 8870333 ncrna LOC102010203 uncharacterized LOC102010203 NW_004955551 286892 305957 - 102010203 AGCD01072653;AGCD01072654;GBDK01406556;XR_001232275;XR_264923 MODEL 8931849 protein-coding Sntb2 syntrophin beta 2 PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN centriolar satellite (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955484 7391076 7489357 - 102005809 AGCD01058330;AGCD01058331;AGCD01058332;AGCD01058333;GBBH01076692;XM_013503934 XP_013359388 MODEL 8845557 ncrna LOC102008291 uncharacterized LOC102008291 NW_004955408 21058606 21068901 - 102008291 AGCD01008549;GBBH01016936;XR_001232367 MODEL 8945454 protein-coding Wbp1 WW domain binding protein 1 ENCODES a protein that exhibits WW domain binding (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); Methylmalonyl-CoA Epimerase Deficiency (ortholog) NW_004955424 11321393 11323651 - 102027420 AGCD01024562;GBCB01039025;XM_005385504;XM_005385505 XP_005385561;XP_005385562 MODEL 10390699 ncrna LOC106149819 uncharacterized LOC106149819 NW_004955454 5785430 5785928 + 106149819 AGCD01045188;GBDF01223600;XR_001236237 MODEL 8717092 protein-coding Prkd3 protein kinase D3 ENCODES a protein that exhibits kinase activity (ortholog); ASSOCIATED WITH RASopathy (ortholog); Weight Gain (ortholog); FOUND IN ciliary basal body (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955441 5051079 5112791 - 102004976 AGCD01036867;AGCD01036868;AGCD01036869;GBBH01149583;GBDJ01031250;XM_005390869 XP_005390926 MODEL 8913195 ncrna LOC102003638 uncharacterized LOC102003638 NW_004955466 11978002 12017214 - 102003638 AGCD01051106;AGCD01051107;GBDI01272836;XR_001236797;XR_001236798;XR_001236799;XR_001236800;XR_001236801;XR_263316;XR_263317 MODEL 9049103 protein-coding Peli1 pellino E3 ubiquitin protein ligase 1 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); ubiquitin-ubiquitin ligase activity (ortholog); INVOLVED IN negative regulation of necroptotic process (ortholog); negative regulation of NF-kappaB transcription factor activity (ortholog); negative regulation of T cell activation (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); Bardet-Biedl syndrome (ortholog); colorectal cancer (ortholog); FOUND IN nucleus (ortholog); site of double-strand break (ortholog) NW_004955424 20212077 20263761 + 102009519 AGCD01024846;AGCD01024847;GBDF01191004;XM_005385703;XM_005385704 XP_005385760;XP_005385761 MODEL 8912590 protein-coding Sptbn5 spectrin beta, non-erythrocytic 5 ENCODES a protein that exhibits actin filament binding (ortholog); dynactin binding (ortholog); dynein intermediate chain binding (ortholog); INVOLVED IN Golgi organization (ortholog); lysosomal transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN apical cortex (ortholog); cortical cytoskeleton (ortholog); cytoplasm (ortholog) NW_004955416 8643177 8684469 - 102006454 AGCD01017064;AGCD01017065;GBBH01205829;XM_013512416 XP_013367870 MODEL 8890241 protein-coding Rgs8 regulator of G protein signaling 8 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN G protein-coupled acetylcholine receptor signaling pathway (ortholog); positive regulation of GTPase activity (ortholog); regulation of dopamine receptor signaling pathway (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); Experimental Seizures (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); dendrite (ortholog); neuronal cell body membrane (ortholog) NW_004955406 21482810 21523518 - 102018888 AGCD01006128;AGCD01006129;AGCD01006130;GBDF01058403;XM_005375009;XM_005375010;XM_005375011;XM_013521471;XM_013521476 XP_005375066;XP_005375067;XP_005375068;XP_013376925;XP_013376930 MODEL 8701261 protein-coding Septin11 septin 11 INVOLVED IN regulation of synapse organization (ortholog); ASSOCIATED WITH autosomal recessive cerebellar ataxia (ortholog); methylmalonic acidemia (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955433 1606246 1691819 + 102015657 AGCD01031365;AGCD01031366;GBCE01031455;XM_005388189;XM_005388190;XM_013516164;XM_013516165;XM_013516166;XR_001234733;XR_001234734 XP_005388246;XP_005388247;XP_013371618;XP_013371619;XP_013371620 MODEL 39131972 snorna SNORD116 Small nucleolar RNA SNORD116 8775465 protein-coding Otc ornithine transcarbamylase ENCODES a protein that exhibits amino acid binding (ortholog); identical protein binding (ortholog); ornithine carbamoyltransferase activity (ortholog); INVOLVED IN ammonium homeostasis (ortholog); citrulline biosynthetic process (ortholog); liver development (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; argininosuccinic aciduria pathway; ASSOCIATED WITH Acidoses (ortholog); Alcoholic Liver Diseases (ortholog); Animal Hepatitis (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955601 481524 543176 + 102029030 AGCD01076757;AGCD01076758;XM_005414823 XP_005414880 MODEL 8814186 protein-coding Lgals2 galectin 2 ENCODES a protein that exhibits galactoside binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); positive regulation of apoptotic process (ortholog); positive regulation of inflammatory response (ortholog); PARTICIPATES IN myocardial infarction pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Coronary Disease (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); FOUND IN galectin complex (ortholog) NW_004955413 23988193 24001868 - 102005920 AGCD01014344;GBBH01127271;XM_005379208;XM_005379209 XP_005379265;XP_005379266 MODEL 8727496 ncrna LOC102010963 uncharacterized LOC102010963 NW_004955450 6116015 6122123 - 102010963 AGCD01042519;GBDF01296262;XR_262533 MODEL 8813485 ncrna LOC102011766 uncharacterized LOC102011766 NW_004955480 7767280 7832733 - 102011766 AGCD01056709;GBDI01142229;XR_001230909;XR_263746 MODEL 8740232 protein-coding Slit2 slit guidance ligand 2 ENCODES a protein that exhibits chemorepellent activity (ortholog); GTPase inhibitor activity (ortholog); heparan sulfate proteoglycan binding (ortholog); INVOLVED IN aortic valve morphogenesis (ortholog); apoptotic process involved in luteolysis (ortholog); axon extension involved in axon guidance (ortholog); PARTICIPATES IN glypican signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); anti-basement membrane glomerulonephritis (ortholog); atrial fibrillation (ortholog); FOUND IN axon (ortholog); cell body (ortholog); cell projection (ortholog) NW_004955480 3982977 4314160 - 102030421 AGCD01056633;AGCD01056634;AGCD01056635;AGCD01056636;GBCE01001769;XM_005402476;XM_005402478;XM_005402479;XM_013503310 XP_005402533;XP_005402535;XP_005402536;XP_013358764 MODEL 9050479 ncrna LOC102011343 uncharacterized LOC102011343 NW_004955507 2011410 2055347 - 102011343 AGCD01065577;AGCD01065578;GBDK01390619;XR_001231618;XR_264370 MODEL 8907204 pseudo LOC102018581 14-3-3 protein zeta/delta pseudogene NW_004955466 5972796 5973429 + 102018581 AGCD01050899;XM_005399250 MODEL 9023503 protein-coding Pkdrej polycystin family receptor for egg jelly INVOLVED IN regulation of acrosome reaction (ortholog); ASSOCIATED WITH intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); FOUND IN nucleus (ortholog); sperm plasma membrane (ortholog) NW_004955413 30377627 30384749 - 102009824 AGCD01014608;GBDF01003380;XM_005379503;XM_005379505;XM_005379506 XP_005379560;XP_005379562;XP_005379563 MODEL 8903274 protein-coding Snapc5 small nuclear RNA activating complex polypeptide 5 ENCODES a protein that exhibits RNA polymerase II general transcription initiation factor activity (ortholog); RNA polymerase III general transcription initiation factor activity (ortholog); INVOLVED IN snRNA transcription by RNA polymerase II (ortholog); snRNA transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH Bloom syndrome (ortholog); cardiofaciocutaneous syndrome (ortholog); cardiofaciocutaneous syndrome 3 (ortholog); FOUND IN nuclear body (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955450 9176462 9197592 + 102029028 AGCD01042585;GBDF01223026;XM_005393702;XM_005393703;XM_013518953 XP_005393759;XP_005393760;XP_013374407 MODEL 10136529 ncrna LOC106146993 uncharacterized LOC106146993 NW_004955407 41858854 41863093 - 106146993 AGCD01007883;XR_001231681 MODEL 8713459 protein-coding Rab20 RAB20, member RAS oncogene family INVOLVED IN cellular response to type II interferon (ortholog); phagosome acidification (ortholog); phagosome-lysosome fusion (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); COVID-19 (ortholog); factor X deficiency (ortholog); FOUND IN Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog); phagocytic vesicle (ortholog) NW_004955404 2087580 2088545 + 102014972 AGCD01003250;GBCQ01098101;GBDK01193260;XM_013515757 XP_013371211 MODEL 8836844 protein-coding LOC102009424 keratin, type II cytoskeletal 5-like NW_004955547 2759440 2771836 - 102009424 AGCD01072294;XM_005411942 XP_005411999 MODEL 8812304 protein-coding LOC102021518 dimethylaniline monooxygenase [N-oxide-forming] 3 NW_004955406 11764264 11781996 + 102021518 AGCD01005895;AGCD01005896;GBBH01063317;XM_005374830 XP_005374887 MODEL 8968938 ncrna LOC102017436 uncharacterized LOC102017436 NW_004955413 484789 494226 + 102017436 AGCD01013472;GBDF01112932;XR_260045 MODEL 8807940 protein-coding Thrap3 thyroid hormone receptor associated protein 3 ENCODES a protein that exhibits nuclear thyroid hormone receptor binding (ortholog); phosphoprotein binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN circadian rhythm (ortholog); mRNA stabilization (ortholog); nuclear-transcribed mRNA catabolic process (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN exon-exon junction complex (ortholog); mediator complex (ortholog); nuclear speck (ortholog) NW_004955452 14233155 14282521 + 102003201 AGCD01044459;AGCD01044460;AGCD01044461;AGCD01044462;GBDF01049619;XM_005395182;XM_005395183;XM_005395184 XP_005395239;XP_005395240;XP_005395241 MODEL 8995680 pseudo LOC102010208 protein kinase C iota type pseudogene NW_004955446 317633 321748 - 102010208 AGCD01039938;XM_005392595 MODEL 8929737 protein-coding Psap prosaposin ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); ganglioside GM1 binding (ortholog); ganglioside GM2 binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); antigen processing and presentation (ortholog); cellular response to reactive oxygen species (ortholog); ASSOCIATED WITH atypical Gaucher's disease due to saposin C deficiency (ortholog); Atypical Krabbe Disease due to Saposin A Deficiency (ortholog); autosomal recessive nonsyndromic deafness (ortholog); FOUND IN aggresome (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955437 19667252 19683669 + 102024848 AGCD01034865;GBBH01002383;XM_013516831;XM_013516832;XM_013516833;XM_013516835;XM_013516836;XM_013516837 XP_013372285;XP_013372286;XP_013372287;XP_013372289;XP_013372290;XP_013372291 MODEL 9055423 protein-coding Sntg1 syntrophin gamma 1 FOUND IN cytoplasm (ortholog); cytoskeleton (ortholog); ruffle membrane (ortholog) NW_004955454 9698609 10439874 + 102026291 AGCD01045349;AGCD01045350;AGCD01045351;AGCD01045352;AGCD01045353;AGCD01045354;AGCD01045355;AGCD01045356;AGCD01045357;AGCD01045358;AGCD01045359;AGCD01045360;AGCD01045361;AGCD01045362;AGCD01045363;AGCD01045364;AGCD01045365;AGCD01045366;GBDF01142064;XM_005396048;XM_005396049;XM_005396050 XP_005396105;XP_005396106;XP_005396107 MODEL 8933714 protein-coding Slc39a10 solute carrier family 39 member 10 ENCODES a protein that exhibits protein tyrosine phosphatase activator activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN epithelial to mesenchymal transition (ortholog); intracellular zinc ion homeostasis (ortholog); negative regulation of B cell apoptotic process (ortholog); ASSOCIATED WITH Neoplasm Invasiveness (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog) NW_004955403 4426538 4479693 - 102021070 AGCD01001786;AGCD01001787;GBCB01119952;XM_005373283;XM_005373284 XP_005373340;XP_005373341 MODEL 8851566 protein-coding LOC102010542 toll-like receptor 12 NW_004955452 11635179 11638291 + 102010542 AGCD01044342;GBDK01385301;XM_013519712 XP_013375166 MODEL 8857967 protein-coding Prkdc protein kinase, DNA-activated, catalytic subunit ENCODES a protein that exhibits DNA-dependent protein kinase activity (ortholog); double-stranded DNA binding (ortholog); enzyme binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); B cell lineage commitment (ortholog); brain development (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Brain Hypoxia-Ischemia (ortholog); breast cancer (ortholog); FOUND IN chromatin (ortholog); DNA-dependent protein kinase complex (ortholog); DNA-dependent protein kinase-DNA ligase 4 complex (ortholog) NW_004955454 7733697 7890896 - 102021844 AGCD01045304;AGCD01045305;AGCD01045306;AGCD01045307;AGCD01045308;AGCD01045309;GBDJ01356019;XM_005396037;XM_013520201;XM_013520202 XP_005396094;XP_013375655;XP_013375656 MODEL 8832127 ncrna LOC102006796 uncharacterized LOC102006796 NW_004955427 4093452 4098801 + 102006796 AGCD01026959;GBDF01145084;XR_261228 MODEL 8875988 pseudo LOC102023241 pre-mRNA-splicing regulator WTAP-like NW_004955411 32294790 32295591 + 102023241 AGCD01012301 MODEL 8924825 trna trnY(gta) tRNA-Tyr MT 5259 5325 - 15822224 39133280 snrna U4 U4 spliceosomal RNA 8764680 protein-coding LOC102024218 olfactory receptor 1468-like NW_004955473 3518681 3519637 - 102024218 AGCD01053934;XM_005401293 XP_005401350 MODEL 8844985 pseudo LOC102012564 zinc finger CCHC domain-containing protein 9-like NW_004955506 4557255 4572734 + 102012564 AGCD01065339;AGCD01065340 MODEL 8833983 pseudo LOC102018946 40S ribosomal protein S16-like NW_004955424 2059622 2060278 + 102018946 AGCD01024262 MODEL 9027719 pseudo LOC102008295 prefoldin subunit 4 pseudogene NW_004955410 29037966 29038370 - 102008295 AGCD01011273 MODEL 8857332 protein-coding Pcp2 Purkinje cell protein 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN G protein-coupled opsin signaling pathway (ortholog); ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 5 (ortholog); mucolipidosis type IV (ortholog) NW_004955563 1625249 1628776 + 102030011 AGCD01074153;XM_005413179;XM_013509164 XP_005413236;XP_013364618 MODEL 8995716 protein-coding Tp53bp2 tumor protein p53 binding protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); NF-kappaB binding (ortholog); p53 binding (ortholog); INVOLVED IN central nervous system development (ortholog); embryo development ending in birth or egg hatching (ortholog); heart development (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH breast lobular carcinoma (ortholog); Breast Neoplasms (ortholog); chromosome 1q41-q42 deletion syndrome (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955520 1254853 1285118 + 102011472 AGCD01068050;GBCB01040894;XM_013507058;XM_013507059;XM_013507060;XM_013507061 XP_013362512;XP_013362513;XP_013362514;XP_013362515 MODEL 8935551 ncrna LOC102003639 uncharacterized LOC102003639 NW_004955467 6581757 6582473 - 102003639 AGCD01051417;GBDF01227082;XR_263345 MODEL 8969387 ncrna LOC102009425 uncharacterized LOC102009425 NW_004955549 824578 919142 - 102009425 AGCD01072431;GBCE01065742;XR_001232253;XR_001232254;XR_001232255;XR_001232256;XR_001232257;XR_264914 MODEL 8823757 protein-coding Ncam1 neural cell adhesion molecule 1 ENCODES a protein that exhibits LRR domain binding (ortholog); phosphatase binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); axonal fasciculation (ortholog); behavioral response to ethanol (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); adenoma (ortholog); alcohol dependence (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); cell-cell junction (ortholog) NW_004955412 14630109 14923847 + 102003325 AGCD01012859;AGCD01012860;AGCD01012861;AGCD01012862;AGCD01012863;GBCE01123400;XM_005378122;XM_005378123;XM_005378124;XM_005378125;XM_005378126;XM_005378127;XM_005378128;XM_005378129;XM_005378130;XM_005378132;XM_005378133;XM_005378134;XM_005378135;XM_005378136;XM_005378137;XM_005378138;XM_013511095 XP_005378179;XP_005378180;XP_005378181;XP_005378182;XP_005378183;XP_005378184;XP_005378185;XP_005378186;XP_005378187;XP_005378189;XP_005378190;XP_005378191;XP_005378192;XP_005378193;XP_005378194;XP_005378195;XP_013366549 MODEL 8942963 protein-coding Plp2 proteolipid protein 2 ENCODES a protein that exhibits chemokine binding (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); COVID-19 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955543 658617 662441 + 102009544 AGCD01071597;AGCD01071598;GBDK01020755;GBDK01020756;XM_005411327 XP_005411384 MODEL 8960397 ncrna LOC102006426 uncharacterized LOC102006426 NW_004955409 9876860 10068894 - 102006426 AGCD01009449;AGCD01009450;AGCD01009451;AGCD01009452;AGCD01009453;AGCD01009454;AGCD01009455;AGCD01009456;GBDF01306880;XR_001232611;XR_001232612;XR_001232613 MODEL 8950227 protein-coding Polr2h RNA polymerase II, I and III subunit H ENCODES a protein that exhibits single-stranded DNA binding (ortholog); INVOLVED IN transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); congenital disorder of glycosylation Id (ortholog); Currarino syndrome (ortholog); FOUND IN nucleus (ortholog); protein-DNA complex (ortholog); RNA polymerase I complex (ortholog) NW_004955420 23132053 23136954 - 102017989 AGCD01021228;GBCQ01122427;XM_005383311 XP_005383368 MODEL 8882702 protein-coding Brd8 bromodomain containing 8 ENCODES a protein that exhibits nuclear thyroid hormone receptor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN cellular response to thyroid hormone stimulus (ortholog); positive regulation of double-strand break repair via homologous recombination (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); colorectal adenocarcinoma (ortholog); endometriosis (ortholog); FOUND IN mitochondrion (ortholog); NuA4 histone acetyltransferase complex (ortholog); nucleoplasm (ortholog) NW_004955418 2232853 2275812 + 102005259 AGCD01018753;AGCD01018754;GBCE01097970;XM_005382124;XM_005382125;XM_005382126;XM_005382127;XM_005382128;XM_005382129;XM_005382130;XM_013512994;XM_013512995;XM_013512996;XM_013512997 XP_005382181;XP_005382182;XP_005382183;XP_005382184;XP_005382185;XP_005382186;XP_005382187;XP_013368448;XP_013368449;XP_013368450;XP_013368451 MODEL 8925516 protein-coding Sptlc1 serine palmitoyltransferase long chain base subunit 1 ENCODES a protein that exhibits serine C-palmitoyltransferase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); positive regulation of lipophagy (ortholog); regulation of fat cell apoptotic process (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Charcot-Marie-Tooth disease (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); serine palmitoyltransferase complex (ortholog) NW_004955515 57711 161012 + 102011471 AGCD01067181;AGCD01067182;AGCD01067183;AGCD01067184;GBDF01192203;XM_005408864 XP_005408921 MODEL 8805134 protein-coding LOC102015519 olfactory receptor 2T8-like NW_004955418 30549727 30550668 + 102015519 AGCD01019528;XM_005382378 XP_005382435 MODEL 9022457 protein-coding Papola poly(A) polymerase alpha ENCODES a protein that exhibits poly(A) RNA polymerase activity (ortholog); INVOLVED IN co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway (ortholog); cytosolic mRNA polyadenylation (ortholog); mRNA 3'-end processing (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; FOUND IN nucleoplasm (ortholog) NW_004955438 18267515 18334379 + 102023849 AGCD01035470;AGCD01035471;GBDF01252873;XM_005390400;XM_005390401;XM_005390404;XR_261947 XP_005390457;XP_005390458;XP_005390461 MODEL 8890548 protein-coding Psapl1 prosaposin like 1 FOUND IN cytosol (ortholog) NW_004955514 3229519 3232393 + 102014388 AGCD01067093;GBBH01032132;XM_005408794 XP_005408851 MODEL 39133090 snorna SNORD116 Small nucleolar RNA SNORD116 8873695 ncrna LOC102010965 uncharacterized LOC102010965 NW_004955403 1991898 2019275 + 102010965 AGCD01001728;GBDF01163403;XR_001233151;XR_259135 MODEL 8828498 protein-coding Slc25a16 solute carrier family 25 member 16 ASSOCIATED WITH Cerebral Visual Impairment and Intellectual Disability (ortholog); nonsyndromic congenital nail disorder (ortholog); FOUND IN mitochondrion (ortholog) NW_004955425 20705758 20739692 - 102023054 AGCD01025754;AGCD01025755;AGCD01025756;AGCD01025757;GBCQ01100435;XM_005386098 XP_005386155 MODEL 8998011 pseudo LOC102011352 transcriptional coactivator YAP1-like NW_004955431 1758354 1764850 + 102011352 AGCD01029917 MODEL 8744595 protein-coding Emb embigin INVOLVED IN cell adhesion (ortholog); plasma membrane lactate transport (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); Experimental Liver Cirrhosis (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN plasma membrane (ortholog) NW_004955446 16716677 16757031 + 102028592 AGCD01040349;GBBH01001163;XM_005392729 XP_005392786 MODEL 8809551 protein-coding Rrp36 ribosomal RNA processing 36 INVOLVED IN ribosomal small subunit biogenesis (ortholog); rRNA processing (ortholog); ASSOCIATED WITH infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955437 8995983 9001517 + 102027568 AGCD01034512;GBCB01041010;XM_005389737;XM_013516897 XP_005389794;XP_013372351 MODEL 8961466 protein-coding LOC102018584 C-type lectin domain family 12 member A-like NW_004955413 5408723 5416010 - 102018584 AGCD01013670;GBDK01238521;XM_005378879;XM_005378881;XR_001232931 XP_005378936;XP_005378938 MODEL 8962937 ncrna LOC102024219 uncharacterized LOC102024219 NW_004955415 11233747 11246572 - 102024219 AGCD01016154;GBDK01311887;XR_001233240 MODEL 8964443 protein-coding Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 ENCODES a protein that exhibits phosphocholine phosphatase activity (ortholog); phosphoethanolamine phosphatase activity (ortholog); pyrophosphatase activity (ortholog); INVOLVED IN bone mineralization (ortholog); bone mineralization involved in bone maturation (ortholog); endochondral ossification (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); Metabolic Bone Diseases (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN extracellular matrix (ortholog); extracellular membrane-bounded organelle (ortholog) NW_004955451 12232465 12240864 + 102026280 AGCD01043379;GBDK01415172;XM_005394214;XM_005394215;XM_005394216;XM_005394217;XM_005394218;XM_013519112 XP_005394271;XP_005394272;XP_005394273;XP_005394274;XP_005394275;XP_013374566 MODEL 8975570 protein-coding Snapin SNAP associated protein ENCODES a protein that exhibits SNARE binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); autophagosome maturation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN acrosomal vesicle (ortholog); BLOC-1 complex (ortholog); BORC complex (ortholog) NW_004955545 306546 308229 + 102018651 AGCD01071783;GBCB01002603;XM_005411436 XP_005411493 MODEL 39133283 snrna U4 U4 spliceosomal RNA 10140014 ncrna LOC106149820 uncharacterized LOC106149820 NW_004955454 13355259 13359881 + 106149820 AGCD01045433;GBCE01084014;XR_001236238 MODEL 8717665 protein-coding Wbp11 WW domain binding protein 11 ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); WW domain binding (ortholog); INVOLVED IN RNA splicing (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); genetic disease (ortholog); VERTEBRAL, CARDIAC, TRACHEOESOPHAGEAL, RENAL, AND LIMB DEFECTS (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955413 11533303 11549067 - 102028846 AGCD01013964;GBCQ01067517;XM_005379004;XM_005379005;XM_013511645 XP_005379061;XP_005379062;XP_013367099 MODEL 10074617 ncrna LOC106146994 uncharacterized LOC106146994 NW_004955511 2261770 2269522 - 106146994 AGCD01066396;GBCE01183479;XR_001231686;XR_001231687 MODEL 9053322 protein-coding Trim41 tripartite motif containing 41 ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to muramyl dipeptide (ortholog); defense response to virus (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955530 84683 95835 - 102004002 AGCD01069830;GBCB01060416;XM_005410099 XP_005410156 MODEL 8850129 protein-coding Rapgef2 Rap guanine nucleotide exchange factor 2 ENCODES a protein that exhibits beta-1 adrenergic receptor binding (ortholog); cAMP binding (ortholog); cGMP binding (ortholog); INVOLVED IN adenylate cyclase-activating adrenergic receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); blood vessel development (ortholog); PARTICIPATES IN adenosine signaling pathway; ASSOCIATED WITH familial adult myoclonic epilepsy 7 (ortholog); Myoclonic Epilepsies (ortholog); FOUND IN apical plasma membrane (ortholog); bicellular tight junction (ortholog); cell-cell junction (ortholog) NW_004955471 12670837 12838910 + 102020438 AGCD01053303;AGCD01053304;AGCD01053305;AGCD01053306;AGCD01053307;AGCD01053308;GBCE01137795;GBDF01084835;XM_013522900 XP_013378354 MODEL 8743582 pseudo LOC102010209 zinc finger CCCH domain-containing protein 15 pseudogene NW_004955446 1347899 1403306 + 102010209 AGCD01039963;AGCD01039964;AGCD01039965 MODEL 8837231 protein-coding Rcan3 RCAN family member 3 ENCODES a protein that exhibits phosphatase binding (ortholog); troponin I binding (ortholog) NW_004955452 4285602 4313904 + 102028372 AGCD01043970;AGCD01043971;GBCE01108458;GBDJ01062277;XM_013519579 XP_013375033 MODEL 9037897 pseudo LOC102024225 zinc finger protein 181-like NW_004955478 7295033 7296935 + 102024225 AGCD01055956 MODEL 8941727 protein-coding Slc39a11 solute carrier family 39 member 11 ENCODES a protein that exhibits copper ion transmembrane transporter activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN zinc ion import across plasma membrane (ortholog); ASSOCIATED WITH COVID-19 (ortholog); high grade glioma (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); nucleus (ortholog) NW_004955478 123873 489704 + 102018284 AGCD01055732;AGCD01055733;AGCD01055734;AGCD01055735;AGCD01055736;AGCD01055737;AGCD01055738;GBDF01053360;XM_005402092;XM_005402093;XM_005402094;XM_005402095;XM_013503238;XM_013503239 XP_005402149;XP_005402150;XP_005402151;XP_005402152;XP_013358692;XP_013358693 MODEL 8915383 protein-coding Sntg2 syntrophin gamma 2 ENCODES a protein that exhibits neuroligin family protein binding (ortholog); PDZ domain binding (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); High Myopia (ortholog); FOUND IN nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955487 533719 639056 - 102007345 AGCD01059221;AGCD01059222;AGCD01059223;AGCD01059224;GBDK01266841;XM_005404340;XM_013504329;XM_013504330;XM_013504331;XM_013504332 XP_005404397;XP_013359783;XP_013359784;XP_013359785;XP_013359786 MODEL 9020570 protein-coding LOC102005359 olfactory receptor 10J1-like NW_004955468 11069935 11070873 - 102005359 AGCD01052113;XM_005400167 XP_005400224 MODEL 8993713 ncrna LOC102023242 uncharacterized LOC102023242 NW_004955465 3870352 3871548 - 102023242 AGCD01050394;GBCE01079619;XR_263235 MODEL 8708515 protein-coding LOC102015521 histone H3.1 NW_004955483 786482 786943 + 102015521 AGCD01057630;XM_005403292 XP_005403349 MODEL 9065615 protein-coding LOC102007926 ATP-binding cassette sub-family G member 2-like NW_004955433 518685 589650 - 102007926 AGCD01031326;AGCD01031327;AGCD01031328;AGCD01031329;GBDJ01282723;XM_005388161 XP_005388218 MODEL 8996427 protein-coding Ptpn12 protein tyrosine phosphatase non-receptor type 12 ENCODES a protein that exhibits phosphoprotein phosphatase activity (ortholog); protein tyrosine phosphatase activity (ortholog); SH3 domain binding (ortholog); INVOLVED IN cellular response to epidermal growth factor stimulus (ortholog); peptidyl-tyrosine dephosphorylation (ortholog); protein dephosphorylation (ortholog); ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); colon carcinoma (ortholog); colorectal cancer (ortholog); FOUND IN cytosol (ortholog); podosome (ortholog) NW_004955410 7556283 7599170 - 102011513 AGCD01010719;AGCD01010720;GBBH01228182;XM_005377213 XP_005377270 MODEL 8850563 protein-coding Prkg1 protein kinase cGMP-dependent 1 ENCODES a protein that exhibits calcium channel regulator activity (ortholog); cGMP binding (ortholog); cGMP-dependent protein kinase activity (ortholog); INVOLVED IN cell growth involved in cardiac muscle cell development (ortholog); cerebellum development (ortholog); cGMP-mediated signaling (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ASSOCIATED WITH allergic rhinitis (ortholog); amphetamine abuse (ortholog); connective tissue disease (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); Golgi apparatus (ortholog) NW_004955425 6176335 7335867 + 102005487 AGCD01025366;AGCD01025367;AGCD01025368;AGCD01025369;AGCD01025370;AGCD01025371;AGCD01025372;AGCD01025373;AGCD01025374;AGCD01025375;AGCD01025376;AGCD01025377;AGCD01025378;AGCD01025379;AGCD01025380;AGCD01025381;AGCD01025382;GBDK01040552;XM_005385905;XM_005385906 XP_005385962;XP_005385963 MODEL 8989246 protein-coding Slc25a17 solute carrier family 25 member 17 ENCODES a protein that exhibits ADP transmembrane transporter activity (ortholog); AMP transmembrane transporter activity (ortholog); ATP transmembrane transporter activity (ortholog); INVOLVED IN ATP transport (ortholog); fatty acid beta-oxidation (ortholog); fatty acid transport (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Rubinstein-Taybi syndrome (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955413 26423805 26474158 - 102012523 AGCD01014441;AGCD01014442;AGCD01014443;AGCD01014444;AGCD01014445;GBDI01136067;XM_005379328 XP_005379385 MODEL 9023679 protein-coding Rab21 RAB21, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN anterograde axonal transport (ortholog); positive regulation of dendrite morphogenesis (ortholog); positive regulation of early endosome to late endosome transport (ortholog); ASSOCIATED WITH obesity (ortholog); FOUND IN cytoplasmic side of early endosome membrane (ortholog); cytoplasmic side of plasma membrane (ortholog); endosome (ortholog) NW_004955405 11766674 11778637 + 102019564 AGCD01004842;GBCB01003208;GBCE01134842;XM_013517632 XP_013373086 MODEL 8828474 protein-coding Peli2 pellino E3 ubiquitin protein ligase family member 2 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN positive regulation of MAPK cascade (ortholog); positive regulation of protein phosphorylation (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog) NW_004955466 10228101 10335129 + 102022065 AGCD01051062;AGCD01051063;AGCD01051064;GBDF01158128;XM_005399193 XP_005399250 MODEL 9041775 protein-coding Thrb thyroid hormone receptor beta ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); cellular response to thyroid hormone stimulus (ortholog); embryonic organ development (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); attention deficit hyperactivity disorder (ortholog); breast cancer (ortholog); FOUND IN nuclear body (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955430 15992146 16322696 - 102011571 AGCD01029630;AGCD01029631;AGCD01029632;AGCD01029633;AGCD01029634;GBDI01296864;XM_005387482;XM_013515651 XP_005387539;XP_013371105 MODEL 9059248 ncrna LOC102009427 uncharacterized LOC102009427 NW_004955442 18649285 18656714 - 102009427 AGCD01038012;GBDF01055895;XR_262168 MODEL 8931283 protein-coding Pcp4 Purkinje cell protein 4 ENCODES a protein that exhibits calcium ion binding (ortholog); calmodulin binding (ortholog); RNA binding (ortholog); INVOLVED IN cellular response to L-glutamate (ortholog); negative regulation of neuron apoptotic process (ortholog); negative regulation of protein kinase activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Colonic Neoplasms (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN axon (ortholog); neurofilament (ortholog); protein-containing complex (ortholog) NW_004955407 39853029 39908151 + 102021312 AGCD01007837;GBCE01155237;XM_005375850 XP_005375907 MODEL 9000673 protein-coding Septin12 septin 12 ENCODES a protein that exhibits GTP binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); Kohlschutter-Tonz syndrome (ortholog); FOUND IN microtubule cytoskeleton (ortholog); midbody (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955442 12704546 12717905 + 102004523 AGCD01037745;GBDF01236610;XM_005391270;XM_005391271 XP_005391327;XP_005391328 MODEL 8715528 protein-coding Otoa otoancorin INVOLVED IN cell-matrix adhesion (ortholog); multicellular organism growth (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 22 (ortholog); autosomal recessive nonsyndromic deafness 7 (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955493 1154695 1228997 + 102013425 AGCD01060882;AGCD01060883;AGCD01060884;AGCD01060885;AGCD01060886;AGCD01060887;GBBH01195751;XM_013504888 XP_013360342 MODEL 8816061 pseudo LOC102024226 peptidyl-prolyl cis-trans isomerase A pseudogene NW_004955479 9843625 9844159 + 102024226 AGCD01056499 MODEL 8860760 protein-coding LOC102011767 galectin-5-like NW_004955481 5476020 5485385 + 102011767 AGCD01056980;AGCD01056981;GBDF01261565;XM_005402778;XM_005402779 XP_005402835;XP_005402836 MODEL 9030206 protein-coding Lgals3 galectin 3 ENCODES a protein that exhibits advanced glycation end-product receptor activity (ortholog); carbohydrate binding (ortholog); chemoattractant activity (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); eosinophil chemotaxis (ortholog); epithelial cell differentiation (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); aortic valve stenosis (ortholog); asthma (ortholog); FOUND IN cell surface (ortholog); cornified envelope (ortholog); cytoplasm (ortholog) NW_004955409 8448120 8452437 - 102026836 AGCD01009411;GBBH01000869;GBDF01004149;XM_005376752 XP_005376809 MODEL 8970735 ncrna LOC102006799 uncharacterized LOC102006799 NW_004955428 1444762 1465444 - 102006799 AGCD01027611;AGCD01027612;GBDF01016339;XR_001234438;XR_001234439;XR_001234440;XR_261291 MODEL 9058763 protein-coding Sptlc2 serine palmitoyltransferase long chain base subunit 2 ENCODES a protein that exhibits serine C-palmitoyltransferase activity (ortholog); INVOLVED IN adipose tissue development (ortholog); ceramide biosynthetic process (ortholog); positive regulation of lipophagy (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN serine palmitoyltransferase complex (ortholog) NW_004955438 1385431 1491534 - 102018224 AGCD01034981;AGCD01034982;AGCD01034983;AGCD01034984;AGCD01034985;GBCE01023390;XM_005390209 XP_005390266 MODEL 8985207 protein-coding Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin INVOLVED IN branching morphogenesis of an epithelial tube (ortholog); cell-cell junction organization (ortholog); cilium assembly (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); autosomal recessive polycystic kidney disease (ortholog); Caroli disease (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); apical plasma membrane (ortholog); centrosome (ortholog) NW_004955411 5988100 6434369 + 102003100 AGCD01011668;AGCD01011669;AGCD01011670;AGCD01011671;AGCD01011672;AGCD01011673;AGCD01011674;AGCD01011675;AGCD01011676;AGCD01011677;AGCD01011678;AGCD01011679;AGCD01011680;AGCD01011681;GBCQ01098601;GBCQ01098620;XM_013510899 XP_013366353 MODEL 9007053 protein-coding LOC102010966 uncharacterized LOC102010966 NW_004955450 12785559 12807014 + 102010966 AGCD01042708;AGCD01042709;GBDJ01327161;XM_013518835 XP_013374289 MODEL 8820675 protein-coding Sntn sentan, cilia apical structure protein FOUND IN cilium (ortholog) NW_004955517 2210700 2233760 - 102023184 AGCD01067619;AGCD01067620;AGCD01067621;AGCD01067622;GBBH01031963;XM_013506948 XP_013362402 MODEL 8766323 protein-coding Slit3 slit guidance ligand 3 ENCODES a protein that exhibits Roundabout binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); aortic valve morphogenesis (ortholog); apoptotic process involved in luteolysis (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Brain Injuries (ortholog); congenital diaphragmatic hernia (ortholog); FOUND IN extracellular space (ortholog) NW_004955408 21719487 22322958 - 102012738 AGCD01008562;AGCD01008563;AGCD01008564;AGCD01008565;AGCD01008566;AGCD01008567;AGCD01008568;AGCD01008569;AGCD01008570;AGCD01008571;AGCD01008572;AGCD01008573;GBCE01095441;GBDJ01128089;XM_005376304;XM_013509145;XM_013509153 XP_005376361;XP_013364599;XP_013364607 MODEL 8824204 protein-coding Papolb poly(A) polymerase beta PARTICIPATES IN 3'-end pre-mRNA processing pathway; ASSOCIATED WITH Baraitser-Winter syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955460 10941776 10946235 + 102014753 AGCD01048625;AGCD01048626;GBDF01044351;GBDF01051821;XM_013521248 XP_013376702 MODEL 8889983 ncrna LOC102018951 uncharacterized LOC102018951 NW_004955427 1405325 1413360 - 102018951 AGCD01026873;GBDJ01101157;XR_261223 MODEL 8903301 protein-coding Rgs9 regulator of G protein signaling 9 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN dark adaptation (ortholog); G protein-coupled dopamine receptor signaling pathway (ortholog); light adaption (ortholog); PARTICIPATES IN dopamine signaling pathway via D1 family of receptors; dopamine signaling pathway via D2 family of receptors; G protein mediated signaling pathway via Galphai family; ASSOCIATED WITH bradyopsia (ortholog); bradyopsia 1 (ortholog); Drug-Induced Dyskinesia (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog); presynaptic membrane (ortholog) NW_004955478 4614730 4683152 + 102004811 AGCD01055853;AGCD01055854;AGCD01055855;GBDF01291760;XM_005402137 XP_005402194 MODEL 8886854 protein-coding Phospho2 phosphatase, orphan 2 NW_004955449 4877521 4885927 - 102026056 AGCD01041902;GBDJ01062648;XM_005393250;XM_005393251;XM_013518730;XM_013518731 XP_005393307;XP_005393308;XP_013374184;XP_013374185 MODEL 8707153 protein-coding Slitrk1 SLIT and NTRK like family member 1 INVOLVED IN adult behavior (ortholog); axonogenesis (ortholog); endocytosis (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); Gilles de la Tourette syndrome (ortholog); trichotillomania (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog) NW_004955404 24436394 24439749 + 102005990 AGCD01003820;XM_005374122 XP_005374179 MODEL 8844699 ncrna LOC102006427 uncharacterized LOC102006427 NW_004955459 3352170 3356325 - 102006427 AGCD01048013;XR_263014 MODEL 8982033 protein-coding Trim42 tripartite motif containing 42 NW_004955508 4959495 4984166 - 102023058 AGCD01065897;GBDF01089541;XM_005407776 XP_005407833 MODEL 8839648 protein-coding Thrsp thyroid hormone responsive ENCODES a protein that exhibits identical protein binding (ortholog); molecular function inhibitor activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN regulation of lipid biosynthetic process (ortholog); regulation of triglyceride biosynthetic process (ortholog); response to bacterium (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); attention deficit hyperactivity disorder (ortholog); carcinoma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955414 13879095 13883378 - 102006448 AGCD01015123;GBDI01010753;XM_005379823 XP_005379880 MODEL 8769289 protein-coding Rapgef3 Rap guanine nucleotide exchange factor 3 ENCODES a protein that exhibits cAMP binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN artery development (ortholog); associative learning (ortholog); cellular response to cAMP (ortholog); PARTICIPATES IN adenosine signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); amyloidosis (ortholog); Arterial Injury (ortholog); FOUND IN apical part of cell (ortholog); axon terminus (ortholog); basal plasma membrane (ortholog) NW_004955500 6655056 6674311 - 102021367 AGCD01063889;GBCE01117886;GBDK01021143;XM_005406623 XP_005406680 MODEL 39132939 snorna SNORD11B small nucleolar RNA, C/D box 11B 8850335 protein-coding Rcbtb1 RCC1 and BTB domain containing protein 1 ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); Coats disease (ortholog); fundus dystrophy (ortholog); FOUND IN cytoplasm (ortholog) NW_004955431 2976283 3080665 - 102026031 AGCD01029944;AGCD01029945;AGCD01029946;GBDI01218100;XM_005387595;XM_005387596;XM_005387597;XM_013515750 XP_005387652;XP_005387653;XP_005387654;XP_013371204 MODEL 8945663 protein-coding Pcp4l1 Purkinje cell protein 4 like 1 ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955468 13004267 13022686 + 102009034 AGCD01052196;GBCE01169891;XM_013522481 XP_013377935 MODEL 8826702 protein-coding LOC102017437 apolipoprotein L3-like NW_004955413 22721494 22730578 - 102017437 AGCD01014313;GBDK01123046;XM_013511284;XR_001232942 XP_013366738 MODEL 8699553 protein-coding LOC102005362 olfactory receptor 51I2 NW_004955414 21355079 21356017 + 102005362 AGCD01015416;XM_005380086 XP_005380143 MODEL 10214251 ncrna LOC106149821 uncharacterized LOC106149821 NW_004955454 14908170 14934272 - 106149821 AGCD01045479;XR_001236242;XR_001236243;XR_001236244 MODEL 8940806 protein-coding Emc1 ER membrane protein complex subunit 1 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); CAKUT (ortholog); cerebellar atrophy, visual impairment, and psychomotor retardation (ortholog); FOUND IN EMC complex (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955527 19069 45951 + 102014484 AGCD01069371;AGCD01069372;GBDF01001898;XM_005409788;XM_005409789 XP_005409845;XP_005409846 MODEL 8915909 protein-coding LOC102003647 olfactory receptor 51G2-like NW_004955414 20928805 20929740 - 102003647 AGCD01015395;XM_005380487 XP_005380544 MODEL 8771733 protein-coding Snca synuclein alpha ENCODES a protein that exhibits actin binding (ortholog); alpha-tubulin binding (ortholog); arachidonate binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); amyloid fibril formation (ortholog); behavioral response to cocaine (ortholog); PARTICIPATES IN apoptotic cell death pathway; Parkinson's disease pathway; ASSOCIATED WITH alcohol use disorder (ortholog); Alzheimer's disease (ortholog); amphetamine abuse (ortholog); FOUND IN actin cytoskeleton (ortholog); axon (ortholog); axon terminus (ortholog) NW_004955405 854011 962741 - 102008373 AGCD01004588;GBBH01051195;GBDK01308795;XM_013517311 XP_013372765 MODEL 8717167 ncrna LOC102007929 uncharacterized LOC102007929 NW_004955435 5612861 5627141 + 102007929 AGCD01032892;AGCD01032893;GBDF01113740;XR_261663 MODEL 8921602 protein-coding Prkg2 protein kinase cGMP-dependent 2 ENCODES a protein that exhibits cGMP-dependent protein kinase activity (ortholog); identical protein binding (ortholog); mitogen-activated protein kinase binding (ortholog); INVOLVED IN cellular hypotonic response (ortholog); circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH acromesomelic dysplasia 4 (ortholog); Dwarfism (ortholog); genetic disease (ortholog); FOUND IN nuclear membrane (ortholog); plasma membrane (ortholog) NW_004955433 5286594 5387571 - 102027779 AGCD01031498;GBDK01324335;XM_005388221;XM_005388222;XM_005388223;XM_013516090 XP_005388278;XP_005388279;XP_005388280;XP_013371544 MODEL 8789881 protein-coding Plpbp pyridoxal phosphate binding protein ASSOCIATED WITH early-onset vitamin B6-dependent epilepsy 1 (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 54 (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955463 13467965 13498544 + 102012515 AGCD01049867;AGCD01049868;AGCD01049869;GBCQ01038272;XM_005398413;XM_005398414 XP_005398470;XP_005398471 MODEL 9027845 protein-coding LOC102018952 developmental pluripotency-associated protein 2 NW_004955427 10138627 10147729 - 102018952 AGCD01027128;GBDF01014812;XM_005386364 XP_005386421 MODEL 8715438 protein-coding Peli3 pellino E3 ubiquitin protein ligase family member 3 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN defense response to Gram-negative bacterium (ortholog); negative regulation of extrinsic apoptotic signaling pathway (ortholog); negative regulation of protein ubiquitination (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); congenital muscular dystrophy-dystroglycanopathy type A13 (ortholog) NW_004955422 18868696 18877826 - 102010594 AGCD01022964;GBDF01002198;XM_005384400;XM_005384401;XM_005384402 XP_005384457;XP_005384458;XP_005384459 MODEL 8874040 protein-coding Psat1 phosphoserine aminotransferase 1 ENCODES a protein that exhibits identical protein binding (ortholog); O-phospho-L-serine:2-oxoglutarate aminotransferase activity (ortholog); INVOLVED IN L-serine biosynthetic process (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH Animal Disease Models (ortholog); genetic disease (ortholog); High Myopia (ortholog); FOUND IN cytosol (ortholog) NW_004955512 1132452 1155405 - 102024490 AGCD01066633;AGCD01066634;GBDI01292993;XM_005408295 XP_005408352 MODEL 8906704 protein-coding Tro trophinin INVOLVED IN negative regulation of cell growth (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Cornelia de Lange syndrome 2 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955475 2266522 2278016 + 102024454 AGCD01054800;GBDK01001381;XM_005401530;XM_013502848;XM_013502849;XM_013502850;XM_013502851;XM_013502852;XM_013502853 XP_005401587;XP_013358302;XP_013358303;XP_013358304;XP_013358305;XP_013358306;XP_013358307 MODEL 8806570 ncrna LOC102011354 uncharacterized LOC102011354 NW_004955432 10743652 10745702 - 102011354 AGCD01030936;GBDF01250417;XR_261523 MODEL 8765011 pseudo LOC102011771 glucose-induced degradation protein 8 homolog pseudogene NW_004955419 29922246 29923728 - 102011771 AGCD01020515 MODEL 8864170 ncrna LOC102018592 uncharacterized LOC102018592 NW_004955414 33004937 33019763 + 102018592 AGCD01015794;AGCD01015795;GBCQ01142945;XR_001233135;XR_001233136 MODEL 8986161 protein-coding Otof otoferlin ENCODES a protein that exhibits AP-2 adaptor complex binding (ortholog); calcium ion binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cochlea development (ortholog); synaptic vesicle exocytosis (ortholog); synaptic vesicle priming (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Arthrogryposis and Ectodermal Dysplasia (ortholog); Auditory Neuropathy (ortholog); autosomal recessive nonsyndromic deafness (ortholog); FOUND IN apical part of cell (ortholog); basal part of cell (ortholog); cochlear hair cell ribbon synapse (ortholog) NW_004955469 8480099 8569215 - 102012946 AGCD01052473;AGCD01052474;AGCD01052475;GBDK01227958;XM_005400430;XM_005400431;XM_005400433;XM_013522672;XM_013522673;XM_013522674;XM_013522675;XM_013522676 XP_005400487;XP_005400488;XP_005400490;XP_013378126;XP_013378127;XP_013378128;XP_013378129;XP_013378130 MODEL 10083134 protein-coding LOC106146995 translation initiation factor IF-2-like NW_004955511 5764592 5767757 - 106146995 AGCD01066580;GBDF01265474;XM_013506403 XP_013361857 MODEL 39133285 snrna U4 U4 spliceosomal RNA 8925934 protein-coding Lgals3bp galectin 3 binding protein ASSOCIATED WITH Idiopathic Generalized Epilepsy (ortholog); liver cirrhosis (ortholog); pityriasis rubra pilaris (ortholog); FOUND IN extracellular space (ortholog) NW_004955506 3731810 3741314 + 102028775 AGCD01065319;GBBH01003797;XM_005407353 XP_005407410 MODEL 9061351 pseudo LOC102006803 aldo-keto reductase family 1 member C23-like protein NW_004955429 94455 445853 + 102006803 AGCD01028306;AGCD01028307;AGCD01028308;AGCD01028309;AGCD01028310;AGCD01028311;AGCD01028312;AGCD01028313;AGCD01028314;AGCD01028315;AGCD01028316;AGCD01028317;AGCD01028318;AGCD01028319;AGCD01028320;AGCD01028321;AGCD01028322;AGCD01028323;AGCD01028324;AGCD01028325;AGCD01028326;AGCD01028327;AGCD01028328;AGCD01028329;AGCD01028330;AGCD01028331;AGCD01028332;AGCD01028333;AGCD01028334;AGCD01028335;AGCD01028336;AGCD01028337;AGCD01028338;AGCD01028339;AGCD01028340;AGCD01028341;AGCD01028342;AGCD01028343;AGCD01028344;AGCD01028345;AGCD01028346;AGCD01028347;AGCD01028348;AGCD01028349;AGCD01028350;XM_005387227 MODEL 9029170 protein-coding Papolg poly(A) polymerase gamma ENCODES a protein that exhibits metal ion binding (ortholog); poly(A) RNA polymerase activity (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; FOUND IN cytosol (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955424 23005942 23034360 - 102027760 AGCD01024997;AGCD01024998;GBDJ01030473;XM_005385754;XM_005385755;XM_005385756;XM_013514739 XP_005385811;XP_005385812;XP_005385813;XP_013370193 MODEL 8921245 protein-coding Slc25a18 solute carrier family 25 member 18 ENCODES a protein that exhibits amino acid:proton symporter activity (ortholog); INVOLVED IN L-glutamate transmembrane transport (ortholog); ASSOCIATED WITH immunodeficiency 51 (ortholog); Neurodevelopmental Disorders (ortholog); Polyarteritis Nodosa, Childhood-Onset (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955454 5648255 5668754 + 102003409 AGCD01045179;AGCD01045180;GBDI01215966;XM_005395974;XM_005395975;XM_005395977 XP_005396031;XP_005396032;XP_005396034 MODEL 10143354 ncrna LOC106146996 uncharacterized LOC106146996 NW_004955511 2935958 2956920 - 106146996 AGCD01066436;AGCD01066437;GBDF01177114;XR_001231689;XR_001231690;XR_001231691;XR_001231692 MODEL 8768356 protein-coding LOC102009432 olfactory receptor 7G2-like NW_004955563 246588 247514 + 102009432 AGCD01074056;XM_005413197 XP_005413254 MODEL 8879498 protein-coding LOC102010210 transmembrane protease serine 11A NW_004955447 4915932 4966492 + 102010210 AGCD01040736;GBDI01055640;XM_005392828 XP_005392885 MODEL 8923499 protein-coding Ptpn13 protein tyrosine phosphatase non-receptor type 13 ENCODES a protein that exhibits phosphatidylinositol 3-kinase regulatory subunit binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN cellular response to toxic substance (ortholog); negative regulation of excitatory synapse assembly (ortholog); negative regulation of protein phosphorylation (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH breast cancer (ortholog); colon cancer (ortholog); colorectal cancer (ortholog); FOUND IN cell body (ortholog); cytoplasm (ortholog); lamellipodium (ortholog) NW_004955474 2988109 3140520 - 102019164 AGCD01054318;AGCD01054319;AGCD01054320;AGCD01054321;AGCD01054322;GBDI01182369;XM_005401347;XM_005401348;XM_005401349;XM_005401354;XM_013502736;XM_013502737;XM_013502738;XM_013502739;XM_013502740;XM_013502741;XM_013502742;XM_013502743;XM_013502744 XP_005401404;XP_005401405;XP_005401406;XP_005401411;XP_013358190;XP_013358191;XP_013358192;XP_013358193;XP_013358194;XP_013358195;XP_013358196;XP_013358197;XP_013358198 MODEL 8830301 protein-coding Slc39a12 solute carrier family 39 member 12 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN positive regulation of sprouting angiogenesis (ortholog); regulation of microtubule polymerization (ortholog); regulation of neuron projection development (ortholog); ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); Imerslund-Grasbeck Syndrome (ortholog); melanoma (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog); plasma membrane (ortholog) NW_004955429 10053022 10116713 - 102026241 AGCD01028665;AGCD01028666;XM_005386957;XM_013515346;XM_013515347;XM_013515348;XM_013515349 XP_005387014;XP_013370800;XP_013370801;XP_013370802;XP_013370803 MODEL 9049508 protein-coding Slitrk2 SLIT and NTRK like family member 2 INVOLVED IN axonogenesis (ortholog); positive regulation of synapse assembly (ortholog); regulation of presynapse assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN dendrite (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog) NW_004955585 479798 488046 - 102004218 AGCD01075997;GBDK01170292;XM_005414427;XM_005414428;XM_005414430;XM_005414431;XM_013509886 XP_005414484;XP_005414485;XP_005414487;XP_005414488;XP_013365340 MODEL 8880724 protein-coding Plpp1 phospholipid phosphatase 1 ENCODES a protein that exhibits ceramide-1-phosphate phosphatase activity (ortholog); diacylglycerol diphosphate phosphatase activity (ortholog); lipid phosphatase activity (ortholog); INVOLVED IN ceramide metabolic process (ortholog); phospholipid catabolic process (ortholog); phospholipid dephosphorylation (ortholog); PARTICIPATES IN D-glycericacidemia pathway; Fabry disease pathway; familial lipoprotein lipase deficiency pathway; ASSOCIATED WITH Disease Progression (ortholog); Neurodevelopmental Disorders (ortholog); Stomach Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); caveola (ortholog); membrane (ortholog) NW_004955446 12201678 12279992 + 102018446 AGCD01040227;AGCD01040228;GBCC01038817;GBDF01046744;XM_013518405 XP_013373859 MODEL 8803046 protein-coding Phox2a paired like homeobox 2A ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN locus ceruleus development (ortholog); midbrain development (ortholog); noradrenergic neuron differentiation (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); cerebral folate receptor alpha deficiency (ortholog); congenital fibrosis of the extraocular muscles 2 (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955414 19141589 19145486 + 102017975 AGCD01015300;AGCD01015301;XM_005380455 XP_005380512 MODEL 8965656 protein-coding LOC102024232 small ubiquitin-related modifier 2-like NW_004955419 19430532 19431458 + 102024232 AGCD01020211;XM_013513265 XP_013368719 MODEL 8939439 protein-coding LOC102008301 zinc finger protein 527 NW_004955468 1868700 1887881 + 102008301 AGCD01051785;GBDF01117493;XM_005399918;XM_013522318 XP_005399975;XP_013377772 MODEL 8820373 protein-coding Thsd1 thrombospondin type 1 domain containing 1 ENCODES a protein that exhibits extracellular matrix binding (ortholog); INVOLVED IN focal adhesion assembly (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH aortic aneurysm (ortholog); chromosome 13q14 deletion syndrome (ortholog); Hydrops Fetalis (ortholog); FOUND IN cell periphery (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955431 5472209 5495937 + 102010933 AGCD01030033;GBCE01160079;GBDK01230446;XM_005387630 XP_005387687 MODEL 8758984 protein-coding Rapgef4 Rap guanine nucleotide exchange factor 4 ENCODES a protein that exhibits cAMP binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); calcium-ion regulated exocytosis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Burns (ortholog); split hand-foot malformation 5 (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); basolateral plasma membrane (ortholog) NW_004955449 2172354 2453367 - 102011601 AGCD01041823;AGCD01041824;AGCD01041825;AGCD01041826;AGCD01041827;GBDK01319992;XM_005393202;XM_005393203;XM_005393204;XM_005393205;XM_005393208;XM_013518783;XM_013518784;XM_013518785 XP_005393259;XP_005393260;XP_005393261;XP_005393262;XP_005393265;XP_013374237;XP_013374238;XP_013374239 MODEL 8854492 ncrna LOC102010969 uncharacterized LOC102010969 NW_004955452 5395349 5427078 - 102010969 AGCD01044025;AGCD01044026;AGCD01044027;AGCD01044028;AGCD01044029;AGCD01044030;AGCD01044031;GBCB01057543;XR_001236120;XR_262656 MODEL 8927994 protein-coding Wbp1l WW domain binding protein 1 like ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN CXCL12-activated CXCR4 signaling pathway (ortholog); hemopoiesis (ortholog); positive regulation of protein ubiquitination (ortholog); ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); nevoid basal cell carcinoma syndrome (ortholog) NW_004955485 7655921 7710387 - 102011546 AGCD01058669;AGCD01058670;AGCD01058671;AGCD01058672;GBCE01054786;XM_005403823;XM_005403824;XM_013504076;XM_013504077 XP_005403880;XP_005403881;XP_013359530;XP_013359531 MODEL 8903690 protein-coding Snu13 small nuclear ribonucleoprotein 13 ENCODES a protein that exhibits ATPase binding (ortholog); box C/D sno(s)RNA binding (ortholog); snoRNA binding (ortholog); INVOLVED IN box C/D snoRNP assembly (ortholog); mRNA splicing, via spliceosome (ortholog); ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; spliceosome pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); FOUND IN box C/D methylation guide snoRNP complex (ortholog); dense fibrillar component (ortholog); nucleolus (ortholog) NW_004955413 27160985 27172648 - 102023018 AGCD01014496;AGCD01014497;GBDF01002032;XM_005379365 XP_005379422 MODEL 8782097 ncrna LOC102011776 uncharacterized LOC102011776 NW_004955421 24690889 24718021 + 102011776 AGCD01022221;GBDF01281561;XR_260824 MODEL 8813809 protein-coding Rab22a RAB22A, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN endocytosis (ortholog); endosome organization (ortholog); regulation of vesicle size (ortholog); FOUND IN actin cytoskeleton (ortholog); early endosome (ortholog); Golgi apparatus (ortholog) NW_004955445 1167941 1224932 - 102021493 AGCD01039330;AGCD01039331;AGCD01039332;AGCD01039333;AGCD01039334;GBBH01076597;GBDK01284734;XM_013518261 XP_013373715 MODEL 8909681 protein-coding Pcsk1 proprotein convertase subtilisin/kexin type 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); identical protein binding (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN insulin processing (ortholog); neurogenesis (ortholog); pancreas development (ortholog); PARTICIPATES IN altered energy homeostasis pathway; altered melanocortin system pathway; melanocortin system pathway; ASSOCIATED WITH Body Weight (ortholog); Dehydration (ortholog); Dwarfism (ortholog); FOUND IN axon terminus (ortholog); dendrite (ortholog); extracellular space (ortholog) NW_004955418 16181809 16224274 + 102012537 AGCD01019121;AGCD01019122;GBDI01347516;XM_005382232 XP_005382289 MODEL 8702432 protein-coding Ncam2 neural cell adhesion molecule 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN axonal fasciculation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amenorrhea (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN axon (ortholog); nuclear body (ortholog); plasma membrane (ortholog) NW_004955407 21730331 22220664 + 102014868 AGCD01007371;AGCD01007372;AGCD01007373;AGCD01007374;AGCD01007375;AGCD01007376;AGCD01007377;AGCD01007378;AGCD01007379;AGCD01007380;AGCD01007381;AGCD01007382;AGCD01007383;GBBH01154784;XM_005375584;XM_005375585 XP_005375641;XP_005375642 MODEL 8935538 protein-coding Rgs9bp regulator of G protein signaling 9 binding protein INVOLVED IN detection of light stimulus involved in visual perception (ortholog); PARTICIPATES IN visual phototransduction pathway; ASSOCIATED WITH bradyopsia (ortholog); bradyopsia 2 (ortholog); fundus dystrophy (ortholog) NW_004955468 5311318 5313612 - 102030513 AGCD01051963;GBCQ01162978;XM_005400087 XP_005400144 MODEL 8834627 ncrna LOC102012565 uncharacterized LOC102012565 NW_004955507 4294100 4350414 + 102012565 AGCD01065647;AGCD01065648;GBDF01133790;XR_001231617;XR_264382 MODEL 9015579 pseudo LOC102006428 transketolase pseudogene NW_004955459 3131676 3133894 + 102006428 AGCD01048009 MODEL 8807069 protein-coding Septin14 septin 14 INVOLVED IN neuron migration (ortholog); protein localization to perinuclear region of cytoplasm (ortholog); spermatid development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); glioblastoma (ortholog); Parkinson's disease (ortholog); FOUND IN acrosomal vesicle (ortholog); axon (ortholog); cytoplasm (ortholog) NW_004955456 8066570 8102318 - 102027491 AGCD01046447;AGCD01046448;AGCD01046449;GBDF01128136;XM_005396691 XP_005396748 MODEL 8926920 ncrna LOC102018953 uncharacterized LOC102018953 NW_004955506 2648403 2663497 - 102018953 AGCD01065298;AGCD01065299;GBDF01001236;XR_001231580;XR_001231581;XR_264336 MODEL 8716119 protein-coding Trim44 tripartite motif containing 44 INVOLVED IN negative regulation of protein K48-linked ubiquitination (ortholog); positive regulation of cytokine-mediated signaling pathway (ortholog); positive regulation of defense response to virus by host (ortholog); ASSOCIATED WITH aniridia (ortholog); Aniridia 3 (ortholog); Cardiomegaly (ortholog); FOUND IN cytoplasm (ortholog) NW_004955422 10580002 10690349 - 102008739 AGCD01022741;AGCD01022742;AGCD01022743;GBCB01005350;XM_005384121 XP_005384178 MODEL 9037605 protein-coding LOC102011357 death-inducer obliterator 1-like NW_004955528 1209085 1240649 + 102011357 AGCD01069553;AGCD01069554;AGCD01069555;AGCD01069556;GBDF01089866;XM_013507433 XP_013362887 MODEL 8785268 protein-coding Slc39a13 solute carrier family 39 member 13 ENCODES a protein that exhibits protein homodimerization activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); connective tissue development (ortholog); intracellular zinc ion homeostasis (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH Alcoholic Liver Diseases (ortholog); bone disease (ortholog); congenital disorder of glycosylation type IIc (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955422 845076 852772 - 102022302 AGCD01022437;AGCD01022438;AGCD01022439;GBBH01093129;GBDF01081895;XM_005383973 XP_005384030 MODEL 8844164 protein-coding LOC102017438 WD repeat-containing protein 87-like NW_004955468 1463879 1474333 + 102017438 AGCD01051769;GBDF01076818;XM_013522427 XP_013377881 MODEL 8742543 protein-coding Slitrk3 SLIT and NTRK like family member 3 INVOLVED IN axonogenesis (ortholog); gephyrin clustering involved in postsynaptic density assembly (ortholog); neurotransmitter-gated ion channel clustering (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cell surface (ortholog); GABA-ergic synapse (ortholog); postsynaptic density membrane (ortholog) NW_004955448 14846976 14852612 - 102025960 AGCD01041649;AGCD01041650;GBDJ01262456;XM_013518581 XP_013374035 MODEL 8920015 protein-coding Pkhd1l1 PKHD1 like 1 INVOLVED IN sensory perception of sound (ortholog); ASSOCIATED WITH Autosomal Recessive Nonsyndromic Deafness 124 (ortholog); FOUND IN stereocilium coat (ortholog); stereocilium tip (ortholog) NW_004955417 16776674 16923058 + 102023805 AGCD01018273;AGCD01018274;AGCD01018275;AGCD01018276;AGCD01018277;GBCE01024956;XM_005381882;XM_013512746 XP_005381939;XP_013368200 MODEL 8804296 protein-coding Troap trophinin associated protein ASSOCIATED WITH COVID-19 (ortholog); hepatocellular carcinoma (ortholog) NW_004955500 8129031 8137235 + 102016493 AGCD01063981;GBDF01084874;XM_005406696;XM_005406697;XM_005406698;XM_005406699 XP_005406753;XP_005406754;XP_005406755;XP_005406756 MODEL 9032189 protein-coding LOC102005363 olfactory receptor 10A4 NW_004955414 22800006 22800953 + 102005363 AGCD01015478;XM_005380181 XP_005380238 MODEL 8889880 protein-coding Rcbtb2 RCC1 and BTB domain containing protein 2 INVOLVED IN cell population proliferation (ortholog); digestive tract development (ortholog); liver development (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); malignant histiocytic disease (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955431 2122640 2170222 - 102016407 AGCD01029923;GBCB01040884;XM_005387558;XM_005387559;XM_005387562;XM_005387564;XM_005387565;XM_005387567;XM_013515735;XM_013515736;XM_013515737;XM_013515738;XM_013515739;XM_013515740;XM_013515741;XM_013515742 XP_005387615;XP_005387616;XP_005387619;XP_005387621;XP_005387622;XP_005387624;XP_013371189;XP_013371190;XP_013371191;XP_013371192;XP_013371193;XP_013371194;XP_013371195;XP_013371196 MODEL 9012150 protein-coding LOC102024233 glutathione S-transferase omega-2 NW_004955485 6370505 6390718 - 102024233 AGCD01058616;AGCD01058617;AGCD01058618;GBDF01002229;XM_005403780 XP_005403837 MODEL 39133287 snrna U4 U4 spliceosomal RNA 8784056 protein-coding Brd9 bromodomain containing 9 ENCODES a protein that exhibits lysine-acetylated histone binding (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 2 (ortholog); dopamine transporter deficiency syndrome (ortholog); interstitial lung disease 2 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); SWI/SNF complex (ortholog) NW_004955504 416145 434132 - 102028991 AGCD01064819;GBCE01000275;XM_005407029;XM_005407030;XM_013505887;XM_013505888;XM_013505889 XP_005407086;XP_005407087;XP_013361341;XP_013361342;XP_013361343 MODEL 10278218 ncrna LOC106149822 uncharacterized LOC106149822 NW_004955454 14954442 14964166 + 106149822 AGCD01045479;XR_001236245 MODEL 8777557 pseudo LOC102006807 oligosaccharyltransferase complex subunit OSTC pseudogene NW_004955512 4327196 4330962 + 102006807 AGCD01066741 MODEL 8968340 protein-coding Emc10 ER membrane protein complex subunit 10 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN positive regulation of angiogenesis (ortholog); positive regulation of endothelial cell migration (ortholog); positive regulation of endothelial cell proliferation (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Neurodevelopmental Disorder with Dysmorphic Facies and Variable Seizures (ortholog); FOUND IN EMC complex (ortholog); endoplasmic reticulum membrane (ortholog); extracellular region (ortholog) NW_004955559 672055 676569 - 102018659 AGCD01073607;GBBH01088737;GBCQ01033482;XM_005412783 XP_005412840 MODEL 10264738 protein-coding LOC106146997 uncharacterized LOC106146997 NW_004955511 4163198 4169584 - 106146997 AGCD01066494;GBDF01001763;XM_013506410 XP_013361864 MODEL 9030983 protein-coding Sncaip synuclein alpha interacting protein ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN dopamine metabolic process (ortholog); regulation of inclusion body assembly (ortholog); regulation of neurotransmitter secretion (ortholog); ASSOCIATED WITH Congenital Lower Urinary Tract Obstruction (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); nucleoplasm (ortholog) NW_004955521 410270 548691 + 102006601 AGCD01068137;AGCD01068138;AGCD01068139;GBCE01085088;XM_005409289;XM_005409291;XM_005409292;XM_005409293;XM_005409294;XM_005409297;XM_005409299;XM_005409301;XM_013507091 XP_005409346;XP_005409348;XP_005409349;XP_005409350;XP_005409351;XP_005409354;XP_005409356;XP_005409358;XP_013362545 MODEL 8847745 protein-coding Snupn snurportin 1 INVOLVED IN cytoskeleton organization (ortholog); protein complex oligomerization (ortholog); protein tetramerization (ortholog); ASSOCIATED WITH Autosomal Recessive Limb-Girdle Muscular Dystrophy Type 29 (ortholog); Bloom syndrome (ortholog); chromosome 15q24 deletion syndrome (ortholog); FOUND IN cytosol (ortholog); NLS-dependent protein nuclear import complex (ortholog); nucleoplasm (ortholog) NW_004955450 2701496 2720971 + 102026376 AGCD01042395;AGCD01042396;AGCD01042397;AGCD01042398;GBDF01083761;XM_005393503;XM_005393504;XM_013519045 XP_005393560;XP_005393561;XP_013374499 MODEL 39131792 snorna SNORD12 small nucleolar RNA, C/D box 12 8883716 protein-coding Prkn parkin RBR E3 ubiquitin protein ligase ENCODES a protein that exhibits actin binding (ortholog); beta-catenin binding (ortholog); cullin family protein binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); aggresome assembly (ortholog); autophagy of mitochondrion (ortholog); PARTICIPATES IN altered mitochondrial autophagy pathway; mitochondrial autophagy pathway; Parkinson's disease pathway; ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); Alzheimer's disease (ortholog); Animal Disease Models (ortholog); FOUND IN aggresome (ortholog); axon (ortholog); cytoplasm (ortholog) NW_004955439 18664230 19953358 + 102007700 AGCD01036062;AGCD01036063;AGCD01036064;AGCD01036065;AGCD01036066;AGCD01036067;AGCD01036068;AGCD01036069;AGCD01036070;AGCD01036071;AGCD01036072;AGCD01036073;AGCD01036074;AGCD01036075;AGCD01036076;AGCD01036077;AGCD01036078;AGCD01036079;AGCD01036080;AGCD01036081;AGCD01036082;AGCD01036083;AGCD01036084;AGCD01036085;AGCD01036086;AGCD01036087;AGCD01036088;AGCD01036089;AGCD01036090;AGCD01036091;AGCD01036092;AGCD01036093;AGCD01036094;AGCD01036095;AGCD01036096;GBDF01253845;XM_005390686;XM_005390687;XM_005390688;XM_005390689 XP_005390743;XP_005390744;XP_005390745;XP_005390746 MODEL 8725008 protein-coding Slc25a19 solute carrier family 25 member 19 ENCODES a protein that exhibits deoxynucleotide transmembrane transporter activity (ortholog); thiamine pyrophosphate transmembrane transporter activity (ortholog); INVOLVED IN deoxynucleotide transport (ortholog); thiamine diphosphate biosynthetic process (ortholog); thiamine pyrophosphate transmembrane transport (ortholog); ASSOCIATED WITH Amish Lethal Microcephaly (ortholog); genetic disease (ortholog); microcephaly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955553 2134715 2160777 - 102025729 AGCD01072924;AGCD01072925;AGCD01072926;AGCD01072927;AGCD01072928;AGCD01072929;GBBH01228703;XM_005412291;XM_005412292;XM_013508653 XP_005412348;XP_005412349;XP_013364107 MODEL 9037178 protein-coding Pcsk1n proprotein convertase subtilisin/kexin type 1 inhibitor ENCODES a protein that exhibits endopeptidase inhibitor activity (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN peptide hormone processing (ortholog); response to cold (ortholog); response to dietary excess (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Alzheimer's disease (ortholog); autistic disorder (ortholog); FOUND IN extracellular space (ortholog); secretory granule (ortholog); trans-Golgi network (ortholog) NW_004955543 383984 387885 - 102022635 AGCD01071579;AGCD01071580;GBCQ01012838;XM_005411368 XP_005411425 MODEL 8993717 protein-coding LOC102023243 serpin B9-like NW_004955465 10475882 10506105 + 102023243 AGCD01050510;GBDJ01011024;XM_005398919;XM_005398922;XM_005398923;XM_005398925;XM_005398926;XM_005398927;XM_013521820;XM_013521821;XM_013521822;XM_013521823 XP_005398976;XP_005398979;XP_005398980;XP_005398982;XP_005398983;XP_005398984;XP_013377274;XP_013377275;XP_013377276;XP_013377277 MODEL 8949102 protein-coding Pelo pelota mRNA surveillance and ribosome rescue factor ENCODES a protein that exhibits nucleoside-triphosphatase regulator activity (ortholog); ribosome binding (ortholog); stalled ribosome sensor activity (ortholog); INVOLVED IN chromosome organization (ortholog); endoderm development (ortholog); inner cell mass cell proliferation (ortholog); PARTICIPATES IN translation termination pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytosolic ribosome (ortholog); Dom34-Hbs1 complex (ortholog) NW_004955446 14564366 14566178 - 102026812 AGCD01040279;GBCQ01001142;XM_005392726 XP_005392783 MODEL 9064904 protein-coding Sptlc3 serine palmitoyltransferase long chain base subunit 3 ENCODES a protein that exhibits serine C-palmitoyltransferase activity (ortholog); INVOLVED IN sphingoid biosynthetic process (ortholog); sphingosine biosynthetic process (ortholog); ASSOCIATED WITH sensory peripheral neuropathy (ortholog); FOUND IN serine palmitoyltransferase complex (ortholog) NW_004955415 22532193 22686071 + 102028854 AGCD01016539;AGCD01016540;AGCD01016541;GBDF01224715;XM_013512291;XM_013512292 XP_013367745;XP_013367746 MODEL 8929279 pseudo LOC102010543 ferritin light chain pseudogene NW_004955405 19953476 19961761 - 102010543 AGCD01005050 MODEL 8774894 protein-coding Phox2b paired like homeobox 2B ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN autonomic nervous system development (ortholog); brainstem development (ortholog); cell development (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); congenital central hypoventilation syndrome (ortholog); Congenital Central Hypoventilation Syndrome 1 (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955443 5935975 5938747 + 102029129 AGCD01038244;AGCD01038245;XM_013518031 XP_013373485 MODEL 8879679 protein-coding LOC102018593 short transient receptor potential channel 2-like NW_004955414 19424090 19460149 + 102018593 AGCD01015315;AGCD01015316;AGCD01015317;AGCD01081640;GBDF01086082;XM_013511714 XP_013367168 MODEL 8791806 protein-coding Polr2i RNA polymerase II subunit I INVOLVED IN transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH Brugada syndrome 5 (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase II, core complex (ortholog) NW_004955468 2494120 2495578 + 102009928 AGCD01051823;GBDI01059799;XM_005399922 XP_005399979 MODEL 8866111 protein-coding Plpp2 phospholipid phosphatase 2 ENCODES a protein that exhibits ceramide-1-phosphate phosphatase activity (ortholog); phosphatidate phosphatase activity (ortholog); sphingosine-1-phosphate phosphatase activity (ortholog); INVOLVED IN ceramide metabolic process (ortholog); phospholipid dephosphorylation (ortholog); phospholipid metabolic process (ortholog); PARTICIPATES IN D-glycericacidemia pathway; familial lipoprotein lipase deficiency pathway; glycerol kinase deficiency pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN caveola (ortholog); early endosome (ortholog); endoplasmic reticulum (ortholog) NW_004955495 7307079 7310898 + 102027996 AGCD01062130;GBCB01088570;GBDJ01189155;XM_005406052 XP_005406109 MODEL 9061502 pseudo LOC102010970 dnaJ homolog subfamily B member 6-like NW_004955452 1116250 1116893 - 102010970 AGCD01043831 MODEL 8918761 ncrna LOC102003654 uncharacterized LOC102003654 NW_004955417 11249264 11260937 - 102003654 AGCD01018126;AGCD01018127;GBBH01160626;XR_260474 MODEL 8718414 protein-coding Thsd4 thrombospondin type 1 domain containing 4 INVOLVED IN elastic fiber assembly (ortholog); microfibril assembly (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Familial Thoracic Aortic Aneurysm 12 (ortholog); FOUND IN extracellular matrix (ortholog); microfibril (ortholog) NW_004955450 5296670 5827252 - 102009131 AGCD01042499;AGCD01042500;AGCD01042501;AGCD01042502;AGCD01042503;AGCD01042504;AGCD01042505;AGCD01042506;AGCD01042507;AGCD01042508;AGCD01042509;AGCD01042510;GBBH01142626;GBCQ01066873;XM_013518949 XP_013374403 MODEL 8833652 protein-coding LOC102007940 NKG2D ligand 1-like NW_004955439 11374237 11379696 + 102007940 AGCD01035901;AGCD01035902;AGCD01035903;GBCE01111523;GBDK01115668;XM_013517300 XP_013372754 MODEL 8964912 pseudo LOC102011785 protein BEX3-like NW_004955425 1246748 1250299 + 102011785 AGCD01025219 MODEL 9041456 protein-coding Rab23 RAB23, member RAS oncogene family ENCODES a protein that exhibits GTPase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); cellular defense response (ortholog); cilium assembly (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); Carpenter syndrome (ortholog); Carpenter syndrome 1 (ortholog); FOUND IN autophagosome (ortholog); cell junction (ortholog); centrosome (ortholog) NW_004955502 2947170 2980634 + 102026236 AGCD01064306;AGCD01064307;GBBH01102042;XM_005406882 XP_005406939 MODEL 10294705 ncrna LOC106149823 uncharacterized LOC106149823 NW_004955454 14947747 14956821 - 106149823 AGCD01045479;XR_001236246 MODEL 8710536 protein-coding Rrp7a ribosomal RNA processing 7 homolog A INVOLVED IN blastocyst formation (ortholog); cilium disassembly (ortholog); protein localization to nucleolus (ortholog); ASSOCIATED WITH common variable immunodeficiency 4 (ortholog); Developmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities (ortholog); intellectual disability (ortholog); FOUND IN cell junction (ortholog); centrosome (ortholog); cilium (ortholog) NW_004955413 27936427 27941311 - 102011428 AGCD01014538;GBCE01004837;XM_005379418 XP_005379475 MODEL 9039898 ncrna LOC102015525 uncharacterized LOC102015525 NW_004955485 770228 773226 + 102015525 AGCD01058458;GBDF01201799;XR_263901 MODEL 8744051 pseudo LOC102006809 40S ribosomal protein SA pseudogene NW_004955431 11112412 11113388 - 102006809 AGCD01030224 MODEL 9018284 protein-coding Tp53i11 tumor protein p53 inducible protein 11 ASSOCIATED WITH intellectual disability (ortholog) NW_004955422 2829212 2833197 + 102022504 AGCD01022495;GBCB01113268;GBDF01308043;XM_013514200 XP_013369654 MODEL 8833789 protein-coding Ptpn14 protein tyrosine phosphatase non-receptor type 14 ENCODES a protein that exhibits protein tyrosine phosphatase activity (ortholog); receptor tyrosine kinase binding (ortholog); transcription coregulator activity (ortholog); INVOLVED IN lymphangiogenesis (ortholog); negative regulation of cell population proliferation (ortholog); regulation of protein export from nucleus (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Choanal Atresia and Lymphedema (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955406 3368833 3463170 + 102012155 AGCD01005671;AGCD01005672;GBCE01077552;XM_005374719;XM_013519964 XP_005374776;XP_013375418 MODEL 8782991 protein-coding Psca prostate stem cell antigen ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); INVOLVED IN negative regulation of ERK1 and ERK2 cascade (ortholog); regulation of neurotransmitter receptor activity (ortholog); ASSOCIATED WITH duodenal ulcer (ortholog); Helicobacter Infections (ortholog); linitis plastica (ortholog); FOUND IN plasma membrane (ortholog) NW_004955454 1425255 1429786 + 102019023 AGCD01044968;AGCD01044969;GBDK01168603;XM_005395732 XP_005395789 MODEL 8700157 protein-coding Brdt bromodomain testis associated ENCODES a protein that exhibits histone binding (ortholog); histone reader activity (ortholog); lysine-acetylated histone binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); male meiosis I (ortholog); male meiotic nuclear division (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH azoospermia (ortholog); Diamond-Blackfan anemia (ortholog); oligospermia (ortholog); FOUND IN nucleus (ortholog) NW_004955423 2434146 2498523 - 102027081 AGCD01023473;AGCD01023474;AGCD01023475;AGCD01023476;AGCD01023477;GBDF01048977;XM_005385061;XM_013514358;XM_013514359 XP_005385118;XP_013369812;XP_013369813 MODEL 9044362 protein-coding Septin2 septin 2 ENCODES a protein that exhibits enzyme regulator activity (ortholog); identical protein binding (ortholog); INVOLVED IN cilium assembly (ortholog); neuron projection development (ortholog); regulation of L-glutamate import across plasma membrane (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN actin cytoskeleton (ortholog); axoneme (ortholog); cell projection (ortholog) NW_004955542 401081 444304 - 102009878 AGCD01071472;AGCD01071473;AGCD01071474;GBCC01008216;XM_005411134;XM_013508103;XM_013508104;XM_013508105;XM_013508106 XP_005411191;XP_013363557;XP_013363558;XP_013363559;XP_013363560 MODEL 9015689 ncrna LOC102011358 uncharacterized LOC102011358 NW_004955436 18358012 18378034 - 102011358 AGCD01033960;GBDF01225067;XR_001234940 MODEL 8727359 protein-coding Rapgef5 Rap guanine nucleotide exchange factor 5 ENCODES a protein that exhibits GTP-dependent protein binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); dilated cardiomyopathy 1A (ortholog); hypomyelinating leukodystrophy 5 (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955410 24525748 24716151 - 102007634 AGCD01011131;AGCD01011132;AGCD01011133;AGCD01011134;GBBH01203298;XM_005377379 XP_005377436 MODEL 9016401 protein-coding Rrp8 ribosomal RNA processing 8 ENCODES a protein that exhibits methylated histone binding (ortholog); INVOLVED IN cellular response to glucose starvation (ortholog); energy homeostasis (ortholog); intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN chromatin silencing complex (ortholog); cytosol (ortholog); eNoSc complex (ortholog) NW_004955414 22311038 22316144 - 102028180 AGCD01015452;GBCE01188088;XM_005380167 XP_005380224 MODEL 8744796 protein-coding Lgals4 galectin 4 ENCODES a protein that exhibits galactoside binding (ortholog); INVOLVED IN antibacterial peptide biosynthetic process (ortholog); defense response to bacterium (ortholog); ASSOCIATED WITH maturity-onset diabetes of the young type 1 (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN extracellular space (ortholog) NW_004955468 694831 701623 + 102009366 AGCD01051725;AGCD01051726;GBBH01043207;XM_005399830;XM_013522455 XP_005399887;XP_013377909 MODEL 8758750 protein-coding LOC102005364 sulfotransferase 1C3 NW_004955470 11921964 11938687 + 102005364 AGCD01052911;AGCD01052912;AGCD01052913;AGCD01052914;GBCQ01008545;GBCQ01008546;XM_013522838 XP_013378292 MODEL 8717200 protein-coding LOC102009434 zinc finger protein 709-like NW_004955569 187430 209724 + 102009434 AGCD01074566;GBDF01011185;XM_013509367 XP_013364821 MODEL 39133289 snrna U4 U4 spliceosomal RNA 8772149 protein-coding LOC102003656 zinc finger protein 878-like NW_004955483 540140 571870 + 102003656 AGCD01057622;AGCD01057623;GBDF01054439;XM_013503796;XM_013503797 XP_013359250;XP_013359251 MODEL 8804924 protein-coding LOC102010212 olfactory receptor 2B6-like NW_004955576 1169060 1171950 - 102010212 AGCD01075362;XM_005413949 XP_005414006 MODEL 8839057 protein-coding Rcc1 regulator of chromosome condensation 1 ENCODES a protein that exhibits chromatin binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); histone binding (ortholog); INVOLVED IN chromosome segregation (ortholog); G1/S transition of mitotic cell cycle (ortholog); mitotic spindle organization (ortholog); FOUND IN chromatin (ortholog); condensed nuclear chromosome (ortholog); cytoplasm (ortholog) NW_004955452 7612784 7643275 + 102017089 AGCD01044178;AGCD01044179;GBDF01004865;XM_005394955;XM_005394956;XM_013519490 XP_005395012;XP_005395013;XP_013374944 MODEL 8832570 protein-coding Plpp3 phospholipid phosphatase 3 ENCODES a protein that exhibits ceramide-1-phosphate phosphatase activity (ortholog); delta-catenin binding (ortholog); integrin binding (ortholog); INVOLVED IN Bergmann glial cell differentiation (ortholog); blood vessel development (ortholog); cell adhesion (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); coronary artery disease (ortholog); Ventricular Dysfunction, Left (ortholog); FOUND IN adherens junction (ortholog); basolateral plasma membrane (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955464 3122420 3197359 + 102021743 AGCD01049971;AGCD01049972;GBDJ01134336;XM_013521597;XM_013521598 XP_013377051;XP_013377052 MODEL 8850790 protein-coding LOC102012566 fatty acid desaturase 2-like protein FADS2P1 NW_004955511 1986298 2020040 + 102012566 AGCD01066386;AGCD01066387;GBCE01044968;XM_005407981 XP_005408038 MODEL 8988418 protein-coding Rgsl1 regulator of G protein signaling like 1 ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955406 21274546 21395534 + 102016666 AGCD01006121;AGCD01006122;AGCD01006123;AGCD01006124;AGCD01006125;AGCD01006126;AGCD01006127;GBDF01194182;GBDF01194183;XM_013521438 XP_013376892 MODEL 39133365 snorna SNORD121A small nucleolar RNA, C/D box 121A 9006122 protein-coding Trim45 tripartite motif containing 45 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN bone development (ortholog); negative regulation of inflammatory response (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intercellular bridge (ortholog) NW_004955435 20216685 20225061 - 102006946 AGCD01033447;GBDF01194974;XM_005389053 XP_005389110 MODEL 9059516 protein-coding Otog otogelin ENCODES a protein that exhibits structural molecule activity (ortholog); INVOLVED IN adult locomotory behavior (ortholog); inner ear receptor cell stereocilium organization (ortholog); protein localization (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 18B (ortholog); FOUND IN cytosol (ortholog); extracellular matrix (ortholog) NW_004955414 32353896 32435097 + 102023024 AGCD01015778;AGCD01015779;AGCD01015780;GBCB01115314;XM_005380533 XP_005380590 MODEL 8877060 protein-coding Sptssa serine palmitoyltransferase small subunit A ENCODES a protein that exhibits serine C-palmitoyltransferase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); protein localization (ortholog); sphingosine biosynthetic process (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); hereditary spastic paraplegia 90A (ortholog); hereditary spastic paraplegia 90B (ortholog); FOUND IN endoplasmic reticulum (ortholog); serine palmitoyltransferase complex (ortholog) NW_004955409 26460208 26460854 + 102007411 AGCD01010186;GBCC01001541;GBDF01085842;XM_005376942 XP_005376999 MODEL 8830860 pseudo LOC102021519 purine nucleoside phosphorylase pseudogene NW_004955406 14154246 14154836 - 102021519 AGCD01005958 MODEL 9043099 protein-coding Wbp2 WW domain binding protein 2 ENCODES a protein that exhibits chromatin DNA binding (ortholog); nuclear estrogen receptor binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to estrogen stimulus (ortholog); establishment of protein localization to chromatin (ortholog); positive regulation of intracellular estrogen receptor signaling pathway (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 107 (ortholog); peroxisomal acyl-CoA oxidase deficiency (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955506 6398411 6406970 + 102011685 AGCD01065420;GBDF01010035;XM_005407477;XM_013506054 XP_005407534;XP_013361508 MODEL 8873551 protein-coding Slc39a14 solute carrier family 39 member 14 ENCODES a protein that exhibits cadmium ion transmembrane transporter activity (ortholog); ferrous iron transmembrane transporter activity (ortholog); iron ion transmembrane transporter activity (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to insulin stimulus (ortholog); chondrocyte differentiation (ortholog); PARTICIPATES IN iron uptake pathway; ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); genetic disease (ortholog); hypermanganesemia with dystonia 2 (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); early endosome membrane (ortholog) NW_004955403 45828247 45867309 + 102006304 AGCD01002837;AGCD01002838;GBCB01120359;XM_005373657;XM_013513817;XM_013513820;XM_013513823;XM_013513825;XM_013513828 XP_005373714;XP_013369271;XP_013369274;XP_013369277;XP_013369279;XP_013369282 MODEL 8963910 protein-coding Brf1 BRF1 general transcription factor IIIB subunit INVOLVED IN positive regulation of transcription by RNA polymerase III (ortholog); regulation of mRNA stability (ortholog); PARTICIPATES IN histone modification pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Cardiomegaly (ortholog); cerebellofaciodental syndrome (ortholog) NW_004955538 3469322 3544704 - 102005507 AGCD01071164;AGCD01071165;AGCD01071166;AGCD01071167;AGCD01071168;AGCD01071169;GBCB01026253;GBDI01136185;XM_005410860 XP_005410917 MODEL 8893271 pseudo LOC102021527 olfactory receptor 6C65-like NW_004955458 2783468 2787627 + 102021527 AGCD01047243 MODEL 9042959 protein-coding Pappa pappalysin 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); metalloendopeptidase activity (ortholog); metallopeptidase activity (ortholog); INVOLVED IN female pregnancy (ortholog); protein catabolic process (ortholog); response to dexamethasone (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); arteriosclerosis (ortholog); autosomal dominant nonsyndromic deafness 56 (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog) NW_004955419 11415666 11645994 - 102005262 AGCD01019956;AGCD01019957;AGCD01019958;GBCQ01066659;GBDJ01249278;XM_013513305 XP_013368759 MODEL 8887067 protein-coding LOC102011365 immunoglobulin iota chain NW_004955442 17173705 17174412 - 102011365 AGCD01037944;GBBH01018271;XM_005391688 XP_005391745 MODEL 8776955 ncrna LOC102006432 uncharacterized LOC102006432 NW_004955410 5331999 5347043 - 102006432 AGCD01010683;GBBH01023353;XR_001232771;XR_259820 MODEL 8746936 protein-coding Ncan neurocan INVOLVED IN modulation of chemical synaptic transmission (ortholog); regulation of postsynapse organization (ortholog); regulation of synapse structural plasticity (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH bipolar disorder (ortholog); dyslexia (ortholog); urinary bladder cancer (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); perineuronal net (ortholog) NW_004955524 2602767 2628771 - 102010088 AGCD01068824;AGCD01068825;AGCD01068826;GBBH01168418;XM_005409622 XP_005409679 MODEL 8845504 pseudo LOC102005366 acyl-protein thioesterase 1 pseudogene NW_004955414 31575081 31575919 + 102005366 AGCD01015757 MODEL 8901726 protein-coding Slc25a20 solute carrier family 25 member 20 ENCODES a protein that exhibits carnitine:O-acyl-L-carnitine antiporter activity (ortholog); O-acyl-L-carnitine transmembrane transporter activity (ortholog); INVOLVED IN carnitine shuttle (ortholog); carnitine transmembrane transport (ortholog); in utero embryonic development (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955532 902937 933675 - 102004750 AGCD01070158;AGCD01070159;GBDJ01176959;XM_005410172;XM_005410173 XP_005410229;XP_005410230 MODEL 8845481 ncrna LOC102003659 uncharacterized LOC102003659 NW_004955420 14434101 14442240 + 102003659 AGCD01020946;GBDF01020272;XR_260715;XR_260716 MODEL 10276227 protein-coding Snurf SNRPN upstream open reading frame ENCODES a protein that exhibits ATPase binding (ortholog); ASSOCIATED WITH Angelman syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955416 31655664 31668803 + 106146229 AGCD01017766;AGCD01017767;AGCD01017768;XM_005381679 XP_005381736 MODEL 8717760 protein-coding LOC102008303 zinc finger protein 419-like NW_004955468 4251476 4270784 + 102008303 AGCD01051903;AGCD01051904;GBCE01148167;XM_005400012;XM_013522366 XP_005400069;XP_013377820 MODEL 8852628 ncrna LOC102010215 uncharacterized LOC102010215 NW_004955449 8016115 8072779 - 102010215 AGCD01042007;AGCD01042008;XR_262494 MODEL 8904568 pseudo LOC102010545 COP9 signalosome complex subunit 8-like NW_004955406 37300353 37301399 - 102010545 AGCD01006573 MODEL 8700530 protein-coding Tp53i13 tumor protein p53 inducible protein 13 INVOLVED IN negative regulation of cell cycle (ortholog); response to UV (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); genetic disease (ortholog); neurofibromatosis 1 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955481 3681495 3685051 - 102010584 AGCD01056911;GBCE01029826;XM_005402678 XP_005402735 MODEL 9028247 protein-coding Pelp1 proline, glutamate and leucine rich protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); SUMO binding (ortholog); INVOLVED IN cellular response to estrogen stimulus (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); FOUND IN euchromatin (ortholog); MLL1 complex (ortholog); nucleolus (ortholog) NW_004955467 10086025 10128969 - 102013490 AGCD01051545;AGCD01051546;GBCQ01033699;XM_013522128;XM_013522129;XM_013522130 XP_013377582;XP_013377583;XP_013377584 MODEL 8705978 protein-coding Pkia cAMP-dependent protein kinase inhibitor alpha ENCODES a protein that exhibits cAMP-dependent protein kinase inhibitor activity (ortholog); protein kinase A catalytic subunit binding (ortholog); INVOLVED IN negative regulation of cAMP-dependent protein kinase activity (ortholog); negative regulation of cAMP/PKA signal transduction (ortholog); negative regulation of catalytic activity (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955444 2498785 2532881 - 102013561 AGCD01038768;GBDK01234704;XM_005392066;XM_005392067;XM_013518200 XP_005392123;XP_005392124;XP_013373654 MODEL 9001139 ncrna LOC102024234 uncharacterized LOC102024234 NW_004955420 11214960 11288694 - 102024234 AGCD01020801;GBBH01078303;XR_260703 MODEL 9053819 protein-coding Trpa1 transient receptor potential cation channel subfamily A member 1 ENCODES a protein that exhibits calcium channel activity (ortholog); channel activity (ortholog); identical protein binding (ortholog); INVOLVED IN calcium ion transmembrane import into cytosol (ortholog); calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); ASSOCIATED WITH Abdominal Pain (ortholog); asthma (ortholog); Bronchial Hyperreactivity (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); plasma membrane (ortholog) NW_004955444 7876284 7922010 + 102027018 AGCD01038922;GBCQ01156908;XM_005392098 XP_005392155 MODEL 8741546 ncrna LOC102010975 uncharacterized LOC102010975 NW_004955457 7328755 7340258 + 102010975 AGCD01046876;GBDF01145843;XR_262928 MODEL 8886486 protein-coding Polr2j RNA polymerase II subunit J ENCODES a protein that exhibits LRR domain binding (ortholog); INVOLVED IN transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleus (ortholog); RNA polymerase II, core complex (ortholog) NW_004955456 15146713 15151320 + 102014745 AGCD01046662;GBDI01007145;XM_005396834 XP_005396891 MODEL 9016035 protein-coding Sptssb serine palmitoyltransferase small subunit B ENCODES a protein that exhibits serine C-palmitoyltransferase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); endoplasmic reticulum organization (ortholog); regulation of serine C-palmitoyltransferase activity (ortholog); FOUND IN serine palmitoyltransferase complex (ortholog) NW_004955448 11756766 11791418 - 102008362 AGCD01041532;AGCD01041533;GBBH01051733;GBCQ01139807;XM_005393134 XP_005393191 MODEL 9055344 protein-coding Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein ENCODES a protein that exhibits U3 snoRNA binding (ortholog); INVOLVED IN ribosomal small subunit biogenesis (ortholog); rRNA processing (ortholog); ASSOCIATED WITH Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN box C/D methylation guide snoRNP complex (ortholog); nucleolus (ortholog); small-subunit processome (ortholog) NW_004955532 3584111 3591234 - 102022852 AGCD01070288;GBDJ01136397;XM_005410332 XP_005410389 MODEL 9027080 protein-coding Septin3 septin 3 ENCODES a protein that exhibits GTP binding (ortholog); identical protein binding (ortholog); INVOLVED IN protein catabolic process at presynapse (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); intellectual disability (ortholog); FOUND IN presynapse (ortholog); presynaptic membrane (ortholog); septin complex (ortholog) NW_004955413 27381103 27400899 + 102028948 AGCD01014504;GBDJ01106595;XM_005379383;XM_005379384;XM_005379385;XM_005379386 XP_005379440;XP_005379441;XP_005379442;XP_005379443 MODEL 10357904 protein-coding LOC106149824 proline-rich proteoglycan 2-like NW_004955454 7713895 7714056 - 106149824 AGCD01045303;GBCQ01141194;XM_013520206 XP_013375660 MODEL 9049014 protein-coding Emc2 ER membrane protein complex subunit 2 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); FOUND IN cytoplasm (ortholog); EMC complex (ortholog); endoplasmic reticulum (ortholog) NW_004955417 31019389 31048143 + 102003445 AGCD01018638;GBDJ01140382;XM_005381969;XM_005381970;XM_005381971 XP_005382026;XP_005382027;XP_005382028 MODEL 8769202 pseudo LOC102018962 protein RUFY3 pseudogene NW_004955432 5057988 5059354 + 102018962 AGCD01030757 MODEL 39133292 snrna U4 U4 spliceosomal RNA 8927468 protein-coding Sncb synuclein beta ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); calcium ion binding (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); dopamine metabolic process (ortholog); negative regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH acute megakaryocytic leukemia (ortholog); Alzheimer's disease (ortholog); Autosomal Dominant Diffuse Lewy Body Disease (ortholog); FOUND IN axon terminus (ortholog); growth cone (ortholog); inclusion body (ortholog) NW_004955408 28894204 28903095 - 102015380 AGCD01008733;GBDI01245052;XM_005376395 XP_005376452 MODEL 8719523 protein-coding Rab24 RAB24, member RAS oncogene family ASSOCIATED WITH cerebellar ataxia (ortholog); Chromosome 5, Trisomy 5q (ortholog); colorectal adenocarcinoma (ortholog); FOUND IN autophagosome (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955408 29548839 29551184 - 102023117 AGCD01008762;GBCB01023942;XM_005376424 XP_005376481 MODEL 8955859 pseudo LOC102017441 coiled-coil domain-containing protein 34 pseudogene NW_004955469 11016154 11018584 + 102017441 AGCD01052553 MODEL 8972327 protein-coding Rcc1l RCC1 like ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); rRNA binding (ortholog); INVOLVED IN mitochondrial fusion (ortholog); mitochondrial large ribosomal subunit assembly (ortholog); mitochondrial small ribosomal subunit assembly (ortholog); ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); pleomorphic xanthoastrocytoma (ortholog); Williams-Beuren syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrial membrane (ortholog) NW_004955456 13285753 13300244 - 102012283 AGCD01046583;AGCD01046584;AGCD01046585;GBBH01209062;GBDF01156653;XM_013520534 XP_013375988 MODEL 8817192 pseudo LOC102006437 splicing factor 45-like NW_004955411 31564696 31581136 + 102006437 AGCD01012274;AGCD01012275 MODEL 8726727 protein-coding Ptpn18 protein tyrosine phosphatase non-receptor type 18 ENCODES a protein that exhibits non-membrane spanning protein tyrosine phosphatase activity (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN blastocyst formation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955459 65191 90459 + 102012407 AGCD01047924;GBDK01194260;XM_005397542;XM_005397543;XM_005397544 XP_005397599;XP_005397600;XP_005397601 MODEL 8890414 protein-coding Pcsk2 proprotein convertase subtilisin/kexin type 2 ENCODES a protein that exhibits endopeptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN enkephalin processing (ortholog); insulin processing (ortholog); islet amyloid polypeptide processing (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH cataract 33 (ortholog); chronic kidney disease (ortholog); Endotoxemia (ortholog); FOUND IN dendrite (ortholog); extracellular space (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955415 26266513 26496905 + 102008940 AGCD01016593;AGCD01016594;AGCD01016595;AGCD01016596;GBDI01324096;XM_005380904 XP_005380961 MODEL 8785913 protein-coding Slitrk4 SLIT and NTRK like family member 4 INVOLVED IN axonogenesis (ortholog); behavioral fear response (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); COVID-19 (ortholog); FOUND IN glutamatergic synapse (ortholog) NW_004955539 1929681 1942525 - 102020162 AGCD01071215;GBDJ01343869;XM_005410903;XM_005410904 XP_005410960;XP_005410961 MODEL 8825151 protein-coding Phpt1 phosphohistidine phosphatase 1 ENCODES a protein that exhibits actin filament binding (ortholog); calcium channel inhibitor activity (ortholog); enzyme inhibitor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); lamellipodium organization (ortholog); negative regulation of T cell receptor signaling pathway (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN cytosol (ortholog); leading edge of lamellipodium (ortholog); nuclear body (ortholog) NW_004955513 4930951 4932509 + 102026562 AGCD01066943;AGCD01066944;GBDJ01218548;XM_005408564 XP_005408621 MODEL 8889065 protein-coding Psd pleckstrin and Sec7 domain containing ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN maintenance of postsynaptic density structure (ortholog); neuron differentiation (ortholog); neuron projection development (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); common variable immunodeficiency 10 (ortholog); primary immunodeficiency disease (ortholog); FOUND IN cleavage furrow (ortholog); dendritic spine (ortholog); glutamatergic synapse (ortholog) NW_004955485 7979654 7994662 + 102017457 AGCD01058685;AGCD01058686;GBDJ01009628;XM_005403841;XM_005403842;XM_005403843;XM_013504081 XP_005403898;XP_005403899;XP_005403900;XP_013359535 MODEL 10220337 protein-coding LOC106146998 proline-rich protein HaeIII subfamily 1-like NW_004955511 5437203 5437552 + 106146998 AGCD01066563;GBCE01102026;XM_013506416 XP_013361870 MODEL 8746305 pseudo LOC102011791 nuclear receptor-binding factor 2-like NW_004955512 4113871 4117507 - 102011791 AGCD01066729 MODEL 8789364 protein-coding Pemt phosphatidylethanolamine N-methyltransferase ENCODES a protein that exhibits phosphatidylethanolamine binding (ortholog); phosphatidylethanolamine N-methyltransferase activity (ortholog); S-adenosylmethionine-dependent methyltransferase activity (ortholog); INVOLVED IN blastocyst hatching (ortholog); glycerophospholipid metabolic process (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN choline metabolic pathway; glycerophospholipid metabolic pathway; homocysteine metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); common variable immunodeficiency 2 (ortholog); FOUND IN brush border membrane (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955577 365031 443138 + 102017077 AGCD01075392;AGCD01075393;AGCD01075394;AGCD01075395;GBDF01001294;XM_005413968;XM_005413970;XM_005413971;XM_013509631 XP_005414025;XP_005414027;XP_005414028;XP_013365085 MODEL 8899365 protein-coding LOC102021528 probable C-mannosyltransferase DPY19L2 NW_004955460 5077043 5137707 + 102021528 AGCD01048446;AGCD01048447;AGCD01048448;GBDF01005800;XM_013521261;XM_013521262;XM_013521263 XP_013376715;XP_013376716;XP_013376717 MODEL 8710259 protein-coding Prkra protein activator of interferon induced protein kinase EIF2AK2 ENCODES a protein that exhibits double-stranded RNA binding (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to oxidative stress (ortholog); ear development (ortholog); PARTICIPATES IN ceramide signaling pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 59 (ortholog); Congenital Microtia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955403 18394609 18410381 + 102027598 AGCD01002099;GBDF01113358;GBDK01432396;XM_013512630 XP_013368084 MODEL 9019876 protein-coding LOC102010978 vegetative cell wall protein gp1-like NW_004955410 12702718 12714924 - 102010978 AGCD01010864;GBDJ01264475;XM_005377303;XM_013510591 XP_005377360;XP_013366045 MODEL 8901788 ncrna LOC102006811 uncharacterized LOC102006811 NW_004955514 2676803 2682633 - 102006811 AGCD01067085;GBBH01015914;XR_001231769;XR_001231770;XR_001231771 MODEL 39133294 snrna U4 U4 spliceosomal RNA 8964897 pseudo LOC102010546 ras-related protein Rab-5A-like NW_004955455 241706 244246 - 102010546 AGCD01045555 MODEL 10384357 pseudo LOC102010218 Ig heavy chain V-III region 23-like NW_004957635 267 750 + 102010218 AGCD01081031 MODEL 8894688 protein-coding Sncg synuclein gamma ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); aggressive behavior (ortholog); cellular response to hydrostatic pressure (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); centrosome (ortholog) NW_004955510 5958276 5961719 + 102011687 AGCD01066297;GBDJ01020114;XM_005407908;XM_013506329 XP_005407965;XP_013361783 MODEL 8736725 pseudo LOC102008308 40S ribosomal protein SA pseudogene NW_004955414 6235311 6236262 - 102008308 AGCD01014914;XR_260239 MODEL 8938628 protein-coding Thsd7a thrombospondin type 1 domain containing 7A INVOLVED IN actin cytoskeleton organization (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); FOUND IN plasma membrane (ortholog); podocyte foot (ortholog) NW_004955432 17896273 18111903 - 102003051 AGCD01031132;AGCD01031133;AGCD01031134;GBCE01162918;GBDJ01062851;XM_005388151 XP_005388208 MODEL 8740154 protein-coding Rab25 RAB25, member RAS oncogene family ENCODES a protein that exhibits myosin V binding (ortholog); INVOLVED IN epithelial cell morphogenesis (ortholog); positive regulation of cell population proliferation (ortholog); positive regulation of epithelial cell migration (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog); pseudopodium (ortholog) NW_004955545 2243237 2250507 + 102020487 AGCD01071891;GBDI01021690;XM_005411651;XM_013508333 XP_005411708;XP_013363787 MODEL 8962602 protein-coding LOC102009437 uncharacterized LOC102009437 NW_004955447 15549581 15578315 + 102009437 AGCD01041059;AGCD01041060;GBBH01122934;XM_013518483 XP_013373937 MODEL 8886977 protein-coding Slitrk5 SLIT and NTRK like family member 5 INVOLVED IN adult behavior (ortholog); axonogenesis (ortholog); chemical synaptic transmission (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); obsessive-compulsive disorder (ortholog); schizophrenia (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog); receptor complex (ortholog) NW_004955404 21342379 21350803 - 102004347 AGCD01003724;GBDK01424009;XM_005374119;XM_005374120 XP_005374176;XP_005374177 MODEL 8779319 protein-coding Pcsk4 proprotein convertase subtilisin/kexin type 4 INVOLVED IN acrosome reaction (ortholog); binding of sperm to zona pellucida (ortholog); fertilization (ortholog); ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); colorectal adenocarcinoma (ortholog); cyclic hematopoiesis (ortholog); FOUND IN acrosomal membrane (ortholog); acrosomal vesicle (ortholog) NW_004955495 6424426 6460252 + 102015414 AGCD01062081;AGCD01062082;GBDF01181269;XM_013505058 XP_013360512 MODEL 8859207 protein-coding Ptpn2 protein tyrosine phosphatase non-receptor type 2 ENCODES a protein that exhibits integrin binding (ortholog); non-membrane spanning protein tyrosine phosphatase activity (ortholog); protein kinase binding (ortholog); INVOLVED IN B cell differentiation (ortholog); erythrocyte differentiation (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN Jak-Stat signaling pathway; ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); Crohn's disease (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955402 771410 846671 + 102008478 AGCD01000033;AGCD01000034;GBCE01096711;XM_005372550;XM_013513054;XM_013513107;XM_013513139;XM_013513163;XM_013513183;XM_013513207;XM_013513238;XM_013513272;XM_013513296;XM_013513319;XM_013513343 XP_005372607;XP_013368508;XP_013368561;XP_013368593;XP_013368617;XP_013368637;XP_013368661;XP_013368692;XP_013368726;XP_013368750;XP_013368773;XP_013368797 MODEL 9039139 pseudo LOC102015530 40S ribosomal protein S12 pseudogene NW_004955492 1654556 1654953 - 102015530 AGCD01060664 MODEL 8783935 ncrna LOC102023244 uncharacterized LOC102023244 NW_004955466 4629522 4635286 - 102023244 AGCD01050834;GBDI01209682;XR_263289 MODEL 8944232 protein-coding Spty2d1 SPT2 chromatin protein domain containing 1 ENCODES a protein that exhibits DNA binding (ortholog); histone binding (ortholog); histone chaperone activity (ortholog); INVOLVED IN heterochromatin formation (ortholog); nucleosome assembly (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH hypertrophic cardiomyopathy 12 (ortholog); intellectual disability (ortholog); progressive myoclonus epilepsy 7 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955414 33255048 33272861 - 102024448 AGCD01015800;GBCE01167704;XM_005380424 XP_005380481 MODEL 8750554 pseudo LOC102012567 transcription initiation factor TFIID subunit 2 pseudogene NW_004955511 981095 984836 - 102012567 AGCD01066350 MODEL 8793200 protein-coding Brf2 BRF2 general transcription factor IIIB subunit ENCODES a protein that exhibits RNA polymerase III type 3 promoter sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); regulation of transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH hereditary spastic paraplegia 54 (ortholog); hypogonadotropic hypogonadism 2 with or without anosmia (ortholog); paraplegia (ortholog); FOUND IN transcription factor TFIIIB complex (ortholog) NW_004955463 13549571 13553946 - 102013483 AGCD01049871;GBDJ01061574;XM_013521531 XP_013376985 MODEL 8888912 protein-coding LOC102011792 phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 NW_004955431 5628023 5671009 + 102011792 AGCD01030037;AGCD01030038;XM_013515893;XM_013515894 XP_013371347;XP_013371348 MODEL 8762009 pseudo LOC102005367 complement component 1 Q subcomponent-binding protein, mitochondrial pseudogene NW_004955414 29861056 29862411 - 102005367 AGCD01015717 MODEL 9027432 protein-coding Ncapd2 non-SMC condensin I complex subunit D2 ENCODES a protein that exhibits histone binding (ortholog); INVOLVED IN mitotic chromosome condensation (ortholog); positive regulation of chromosome condensation (ortholog); positive regulation of chromosome segregation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); FOUND IN centriolar satellite (ortholog); ciliary basal body (ortholog); condensed chromosome (ortholog) NW_004955413 4136492 4160550 + 102017858 AGCD01013601;GBDF01011226;XM_005378779;XM_005378780;XM_013511313;XM_013511314 XP_005378836;XP_005378837;XP_013366767;XP_013366768 MODEL 8848071 protein-coding Rhag Rh associated glycoprotein ENCODES a protein that exhibits ammonium channel activity (ortholog); ankyrin binding (ortholog); carbon dioxide transmembrane transporter activity (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); carbon dioxide transmembrane transport (ortholog); carbon dioxide transport (ortholog); ASSOCIATED WITH hemolytic anemia (ortholog); overhydrated hereditary stomatocytosis (ortholog); Rh deficiency syndrome (ortholog); FOUND IN ankyrin-1 complex (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955411 8335223 8354430 + 102006754 AGCD01011727;GBBH01082480;XM_005377673 XP_005377730 MODEL 9015771 protein-coding Emc3 ER membrane protein complex subunit 3 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); Candidiasis, Familial, 9 (ortholog); myoclonic-atonic epilepsy (ortholog); FOUND IN EMC complex (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955561 1442953 1459988 - 102016760 AGCD01073855;GBDF01004644;XM_005413063 XP_005413120 MODEL 8748452 protein-coding Slc25a21 solute carrier family 25 member 21 ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); INVOLVED IN mitochondrial alpha-ketoglutarate transmembrane transport (ortholog); ASSOCIATED WITH anodontia (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); choreatic disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955409 23949794 24421944 + 102023668 AGCD01010074;AGCD01010075;AGCD01010076;AGCD01010077;AGCD01010078;AGCD01010079;AGCD01010080;AGCD01010081;AGCD01010082;AGCD01010083;GBDF01040578;XM_005376906;XM_005376907;XM_013510365;XM_013510366 XP_005376963;XP_005376964;XP_013365819;XP_013365820 MODEL 8904162 protein-coding Snw1 SNW domain containing 1 ENCODES a protein that exhibits enzyme binding (ortholog); Notch binding (ortholog); nuclear androgen receptor binding (ortholog); INVOLVED IN cellular response to retinoic acid (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ortholog); mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Brain Injuries (ortholog); breast cancer (ortholog); breast carcinoma (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); chromatin (ortholog); cyclin/CDK positive transcription elongation factor complex (ortholog) NW_004955438 1561562 1601492 - 102019433 AGCD01034986;GBDF01008825;XM_005390214 XP_005390271 MODEL 8750824 protein-coding Trim46 tripartite motif containing 46 INVOLVED IN anterograde synaptic vesicle transport (ortholog); axonogenesis (ortholog); microtubule bundle formation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN axon initial segment (ortholog); main axon (ortholog); proximal neuron projection (ortholog) NW_004955545 1646244 1656825 + 102028020 AGCD01071864;GBDF01295696;XM_005411579;XM_005411581;XM_005411582;XM_005411583;XM_005411584 XP_005411636;XP_005411638;XP_005411639;XP_005411640;XP_005411641 MODEL 8905429 protein-coding Wbp2nl WBP2 N-terminal like INVOLVED IN regulation of cytosolic calcium ion concentration (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); intellectual disability (ortholog); FOUND IN sperm flagellum (ortholog); sperm head (ortholog) NW_004955413 27402614 27442106 + 102030406 AGCD01014504;AGCD01014505;AGCD01014506;AGCD01014507;GBDF01123498;XM_005379389;XM_005379391;XM_005379392;XM_005379393;XM_005379394 XP_005379446;XP_005379448;XP_005379449;XP_005379450;XP_005379451 MODEL 9008476 protein-coding Slc39a2 solute carrier family 39 member 2 ENCODES a protein that exhibits metal ion transmembrane transporter activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN cadmium ion transmembrane transport (ortholog); keratinocyte differentiation (ortholog); zinc ion transmembrane transport (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); purine nucleoside phosphorylase deficiency (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); cytoplasmic vesicle (ortholog); plasma membrane (ortholog) NW_004955550 1762905 1765254 + 102029800 AGCD01072587;GBCC01045952;XM_005412076;XM_005412077 XP_005412133;XP_005412134 MODEL 8858107 protein-coding Pkib cAMP-dependent protein kinase inhibitor beta ENCODES a protein that exhibits cAMP-dependent protein kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of cAMP-dependent protein kinase activity (ortholog); positive regulation of telomere maintenance (ortholog) NW_004955436 4433065 4600967 + 102022958 AGCD01033664;AGCD01033665;AGCD01033666;AGCD01033667;AGCD01033668;AGCD01033669;GBBH01005987;XM_005389139;XM_005389141;XM_005389142;XM_005389143;XM_005389144;XM_005389147;XM_013516610;XM_013516611;XM_013516612;XM_013516613 XP_005389196;XP_005389198;XP_005389199;XP_005389200;XP_005389201;XP_005389204;XP_013372064;XP_013372065;XP_013372066;XP_013372067 MODEL 8974742 pseudo LOC102011366 protein RUFY3 pseudogene NW_004955442 14907176 14908675 + 102011366 AGCD01037848 MODEL 8729488 protein-coding Psd2 pleckstrin and Sec7 domain containing 2 ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cleavage furrow (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955418 793960 848550 - 102011768 AGCD01018691;GBDF01281245;XM_005382051;XM_013512924;XM_013512925;XM_013512926;XM_013512927;XM_013512928 XP_005382108;XP_013368378;XP_013368379;XP_013368380;XP_013368381;XP_013368382 MODEL 8747732 protein-coding Pappa2 pappalysin 2 ENCODES a protein that exhibits metalloendopeptidase activity (ortholog); metallopeptidase activity (ortholog); INVOLVED IN bone morphogenesis (ortholog); proteolysis (ortholog); response to salt stress (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autism spectrum disorder (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955406 16167764 16430165 + 102017422 AGCD01005994;AGCD01005995;AGCD01005996;AGCD01005997;GBCQ01032042;XM_005374904;XM_013520972 XP_005374961;XP_013376426 MODEL 8721971 protein-coding Lgals8 galectin 8 ENCODES a protein that exhibits carbohydrate binding (ortholog); integrin binding (ortholog); INVOLVED IN cellular response to virus (ortholog); lymphatic endothelial cell migration (ortholog); plasma cell differentiation (ortholog); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955492 3673233 3693777 - 102017993 AGCD01060699;GBBH01093652;XM_005404932;XM_005404934;XM_005404935;XM_005404936;XM_013504707;XM_013504708;XM_013504709 XP_005404989;XP_005404991;XP_005404992;XP_005404993;XP_013360161;XP_013360162;XP_013360163 MODEL 10197077 protein-coding Rrs1 ribosome biogenesis regulator 1 homolog ENCODES a protein that exhibits 5S rRNA binding (ortholog); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); mitotic metaphase chromosome alignment (ortholog); protein localization to nucleolus (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); FOUND IN condensed nuclear chromosome (ortholog); endoplasmic reticulum (ortholog); nucleolus (ortholog) NW_004955444 12740172 12751674 - 106146256 AGCD01039081;GBDI01119105;XM_013518191;XM_013518192;XM_013518193;XR_262264 XP_013373645;XP_013373646;XP_013373647 MODEL 8994793 protein-coding Rab26 RAB26, member RAS oncogene family ENCODES a protein that exhibits GMP binding (ortholog); GTP binding (ortholog); INVOLVED IN exocrine system development (ortholog); Golgi to plasma membrane protein transport (ortholog); regulated exocytosis (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); developmental and epileptic encephalopathy 1 (ortholog); endometrial carcinoma (ortholog); FOUND IN Golgi membrane (ortholog); plasma membrane (ortholog); secretory granule membrane (ortholog) NW_004955442 15114333 15119481 - 102004014 AGCD01037859;GBBH01180568;XM_005391459;XM_005391461;XM_005391463;XM_005391464;XM_013517638 XP_005391516;XP_005391518;XP_005391520;XP_005391521;XP_013373092 MODEL 10268482 protein-coding LOC106149825 translation initiation factor IF-2-like NW_004955454 7712978 7714050 + 106149825 AGCD01045303;GBCE01183971;XM_013520207 XP_013375661 MODEL 8926991 protein-coding LOC102021530 uncharacterized LOC102021530 NW_004955409 2232328 2240671 + 102021530 AGCD01009192;AGCD01009193;GBDI01039009;XM_013510034 XP_013365488 MODEL 8874925 protein-coding LOC102018966 zinc finger protein 124-like NW_004955524 346998 358842 - 102018966 AGCD01068675;XM_005409478 XP_005409535 MODEL 8780142 protein-coding LOC102017444 olfactory receptor 51I2-like NW_004955414 20249559 20250521 - 102017444 AGCD01015365;XM_005380054 XP_005380111 MODEL 8823546 pseudo LOC102023245 non-histone chromosomal protein HMG-14-like NW_004955412 26679167 26679592 - 102023245 AGCD01013208 MODEL 9039470 protein-coding LOC102006440 olfactory receptor 8D2-like NW_004955412 25129549 25130483 - 102006440 AGCD01013136;XM_013510980 XP_013366434 MODEL 39133297 snrna U4 U4 spliceosomal RNA 8879849 protein-coding Otogl otogelin like INVOLVED IN inner ear receptor cell stereocilium organization (ortholog); protein localization (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH autosomal dominant centronuclear myopathy (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 84B (ortholog) NW_004955405 18935328 19063983 + 102021301 AGCD01005029;AGCD01005030;GBDJ01216937;XM_005374364 XP_005374421 MODEL 9005830 protein-coding LOC102024236 uncharacterized LOC102024236 NW_004955486 4140771 4144719 - 102024236 AGCD01059055;GBDI01207893;GBDK01042435;XM_013504281 XP_013359735 MODEL 8794771 protein-coding Polr2k RNA polymerase II, I and III subunit K INVOLVED IN transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH Cohen syndrome (ortholog); Kartagener syndrome (ortholog); primary ciliary dyskinesia 28 (ortholog); FOUND IN nucleus (ortholog); RNA polymerase I complex (ortholog); RNA polymerase II, core complex (ortholog) NW_004955417 15412527 15416090 + 102015404 AGCD01018232;GBDF01122589;XM_005381864 XP_005381921 MODEL 10278191 ncrna LOC106146999 uncharacterized LOC106146999 NW_004955511 5761499 5764505 - 106146999 AGCD01066580;GBDF01055009;XR_001231694 MODEL 9045238 protein-coding Trpc1 transient receptor potential cation channel subfamily C member 1 ENCODES a protein that exhibits ATPase binding (ortholog); inositol 1,4,5 trisphosphate binding (ortholog); monoatomic cation channel activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); melanin biosynthetic process (ortholog); modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); Diabetic Nephropathies (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN basolateral plasma membrane (ortholog); costamere (ortholog); cytoplasm (ortholog) NW_004955508 3143868 3211613 - 102013194 AGCD01065805;GBCE01163015;GBDF01158759;XM_005407739 XP_005407796 MODEL 8806136 protein-coding Snd1 staphylococcal nuclease and tudor domain containing 1 ENCODES a protein that exhibits endonuclease activity (ortholog); RISC complex binding (ortholog); RNA binding (ortholog); INVOLVED IN miRNA catabolic process (ortholog); regulation of cell cycle process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); hypospadias (ortholog); long QT syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dense body (ortholog) NW_004955479 8692674 9124504 + 102024672 AGCD01056451;AGCD01056452;AGCD01056453;AGCD01056454;AGCD01056455;AGCD01056456;AGCD01056457;GBDI01008676;XM_005402366 XP_005402423 MODEL 8881468 protein-coding LOC102018604 neutrophil gelatinase-associated lipocalin-like NW_004955419 330399 334636 - 102018604 AGCD01019576;XM_013513093 XP_013368547 MODEL 8793566 protein-coding Slc39a3 solute carrier family 39 member 3 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN cell morphogenesis (ortholog); embryonic cranial skeleton morphogenesis (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog); RASopathy (ortholog); FOUND IN apical plasma membrane (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); plasma membrane (ortholog) NW_004955899 808 9721 + 102023969 AGCD01078617;GBDF01044519;XM_005415143 XP_005415200 MODEL 9025974 protein-coding Septin4 septin 4 ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); identical protein binding (ortholog); INVOLVED IN brain development (ortholog); flagellated sperm motility (ortholog); hematopoietic stem cell homeostasis (ortholog); ASSOCIATED WITH Fanconi anemia complementation group O (ortholog); hereditary breast ovarian cancer syndrome (ortholog); Joubert syndrome 1 (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cell projection (ortholog) NW_004955451 4505318 4530387 + 102022448 AGCD01043128;GBDF01047745;XM_005394007;XM_005394008;XM_005394009;XM_005394010;XM_005394011;XM_005394014 XP_005394064;XP_005394065;XP_005394066;XP_005394067;XP_005394068;XP_005394071 MODEL 8792024 ncrna LOC102015536 uncharacterized LOC102015536 NW_004955494 2042184 2070282 + 102015536 AGCD01061434;GBDF01220369;XR_264105 MODEL 8860695 pseudo LOC102007941 coiled-coil domain-containing protein 152-like NW_004955440 2711927 2712937 + 102007941 AGCD01036218 MODEL 8929594 protein-coding Spx spexin hormone ENCODES a protein that exhibits neuropeptide hormone activity (ortholog); type 2 galanin receptor binding (ortholog); type 3 galanin receptor binding (ortholog); INVOLVED IN long-chain fatty acid import into cell (ortholog); negative regulation of appetite (ortholog); negative regulation of heart rate (ortholog); ASSOCIATED WITH dilated cardiomyopathy 1O (ortholog); FOUND IN cytoplasm (ortholog); dense core granule (ortholog); extracellular space (ortholog) NW_004955413 17173215 17178388 + 102018073 AGCD01014131;GBDJ01257021;XM_005379061 XP_005379118 MODEL 8881677 protein-coding Tp53i3 tumor protein p53 inducible protein 3 ENCODES a protein that exhibits NADPH binding (ortholog); NADPH:quinone reductase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN NADP metabolic process (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); autism spectrum disorder (ortholog); carcinoma (ortholog) NW_004955469 6287442 6298944 - 102028848 AGCD01052377;AGCD01052378;AGCD01052379;GBDF01149068;XM_005400567 XP_005400624 MODEL 8900280 protein-coding Rcc2 regulator of chromosome condensation 2 ENCODES a protein that exhibits microtubule binding (ortholog); protein domain specific binding (ortholog); protein kinase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); chromosome passenger complex localization to kinetochore (ortholog); establishment of protein localization (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); prostate cancer (ortholog); FOUND IN chromosome, centromeric core domain (ortholog); early endosome membrane (ortholog); membrane (ortholog) NW_004955527 1490179 1512111 + 102019102 AGCD01069404;AGCD01069405;AGCD01069406;AGCD01069407;GBCE01077274;GBDJ01083813;XM_013507406 XP_013362860 MODEL 8816920 pseudo LOC102021531 zinc finger CCHC-type and RNA-binding motif-containing protein 1-like NW_004955460 10685107 10694650 + 102021531 AGCD01048600 MODEL 9014578 protein-coding LOC102005368 translation initiation factor IF-2-like NW_004955472 12291264 12293311 + 102005368 AGCD01053791;AGCD01053792;GBBH01193885;GBDJ01318455;XM_013523032 XP_013378486 MODEL 9023530 protein-coding LOC102010984 sentrin-specific protease 3 NW_004955467 9351956 9374126 - 102010984 AGCD01051498;GBDJ01134691;XM_005399477;XM_005399478;XM_005399483;XM_013522078;XM_013522079;XM_013522080;XM_013522081;XM_013522082 XP_005399534;XP_005399535;XP_005399540;XP_013377532;XP_013377533;XP_013377534;XP_013377535;XP_013377536 MODEL 9043072 pseudo LOC102008312 60S ribosomal protein L7 pseudogene NW_004955479 9952660 9953327 - 102008312 AGCD01056510 MODEL 8758141 pseudo LOC102010222 small nuclear ribonucleoprotein Sm D1 pseudogene NW_004955405 4117051 4117475 - 102010222 AGCD01004644;XM_005374670 MODEL 9017616 protein-coding Rhbdd1 rhomboid domain containing 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); peptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN cellular response to unfolded protein (ortholog); cellular response to UV (ortholog); ERAD pathway (ortholog); ASSOCIATED WITH pancreatic cancer (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum quality control compartment (ortholog) NW_004955453 7527090 7656689 - 102010767 AGCD01044747;AGCD01044748;AGCD01044749;GBDJ01117091;XM_005395453;XM_005395455;XM_005395456;XM_005395457;XM_005395458;XM_005395459;XM_005395460 XP_005395510;XP_005395512;XP_005395513;XP_005395514;XP_005395515;XP_005395516;XP_005395517 MODEL 8948179 protein-coding Phrf1 PHD and ring finger domains 1 ENCODES a protein that exhibits protein domain specific binding (ortholog); RNA polymerase binding (ortholog); INVOLVED IN mRNA processing (ortholog); transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); Chanarin-Dorfman syndrome (ortholog); Costello syndrome (ortholog) NW_004955476 11446194 11476892 - 102015313 AGCD01055458;AGCD01055459;GBDI01217169;XM_005401832;XM_005401833 XP_005401889;XP_005401890 MODEL 39133345 snorna SNORD123 small nucleolar RNA, C/D box 123 8716160 protein-coding Trim47 tripartite motif containing 47 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); regulation of postsynapse assembly (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Experimental Neoplasms (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955506 6379088 6383671 + 102010607 AGCD01065416;GBDK01285018;XM_005407473 XP_005407530 MODEL 8736420 protein-coding Thsd7b thrombospondin type 1 domain containing 7B ASSOCIATED WITH Mowat-Wilson syndrome (ortholog) NW_004955440 4054497 4834962 + 102012029 AGCD01036255;AGCD01036256;AGCD01036257;AGCD01036258;AGCD01036259;AGCD01036260;AGCD01036261;AGCD01036262;AGCD01036263;AGCD01036264;AGCD01036265;AGCD01036266;AGCD01036267;AGCD01036268;AGCD01036269;GBBH01217705;XM_013517433 XP_013372887 MODEL 8723520 protein-coding Plpp4 phospholipid phosphatase 4 ENCODES a protein that exhibits diacylglycerol diphosphate phosphatase activity (ortholog); identical protein binding (ortholog); phosphatidate phosphatase activity (ortholog); INVOLVED IN blastocyst hatching (ortholog); phospholipid dephosphorylation (ortholog); regulation of calcium ion import (ortholog); ASSOCIATED WITH breast cancer (ortholog) NW_004955551 1328652 1458714 + 102015056 AGCD01072692;AGCD01072693;AGCD01072694;GBDJ01262036;XM_005412174 XP_005412231 MODEL 9004579 pseudo LOC102011370 olfactory receptor 7G1-like NW_004955563 374406 376655 + 102011370 AGCD01074064 MODEL 9036357 protein-coding LOC102023246 histone H4 NW_004955413 899257 901762 - 102023246 AGCD01013494;XM_005378712 XP_005378769 MODEL 8962038 pseudo LOC102012571 peptidyl-prolyl cis-trans isomerase A pseudogene NW_004955434 15042346 15042821 - 102012571 AGCD01032459 MODEL 8709998 protein-coding Prkrip1 PRKR interacting protein 1 ENCODES a protein that exhibits double-stranded RNA binding (ortholog); protein kinase binding (ortholog); protein kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of phosphorylation (ortholog); negative regulation of protein kinase activity (ortholog); renal system process (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleolus (ortholog) NW_004955456 15188211 15216267 - 102016022 AGCD01046663;AGCD01046664;GBDF01085713;XM_005396837 XP_005396894 MODEL 8883433 protein-coding Pcsk5 proprotein convertase subtilisin/kexin type 5 ENCODES a protein that exhibits endopeptidase activity (ortholog); peptidase activity (ortholog); peptide binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); cardiac septum development (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Anorectal Malformations (ortholog); bone development disease (ortholog); FOUND IN extracellular space (ortholog); Golgi apparatus (ortholog); Golgi medial cisterna (ortholog) NW_004955512 2914834 3333440 - 102029890 AGCD01066692;AGCD01066693;AGCD01066694;AGCD01066695;AGCD01066696;AGCD01066697;AGCD01066698;GBCE01148322;GBCQ01140038;XM_005408309;XM_005408310 XP_005408366;XP_005408367 MODEL 8806509 protein-coding Ptpn20 protein tyrosine phosphatase non-receptor type 20 ASSOCIATED WITH schizophrenia (ortholog); FOUND IN centriolar satellite (ortholog) NW_004955556 1850933 1943318 + 102010842 AGCD01073204;AGCD01073205;AGCD01073206;GBBH01151275;XM_005412599;XM_005412600;XM_005412601;XM_005412602;XM_005412603;XM_005412604;XM_005412605;XM_005412606;XM_005412607;XM_005412608;XM_005412609;XM_013508810 XP_005412656;XP_005412657;XP_005412658;XP_005412659;XP_005412660;XP_005412661;XP_005412662;XP_005412663;XP_005412664;XP_005412665;XP_005412666;XP_013364264 MODEL 10256792 protein-coding Polr2l RNA polymerase II, I and III subunit L ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase I complex (ortholog) NW_004955476 11291215 11293536 + 106146378 AGCD01055447;AY533215;GBDI01017433;XM_013502959 AAS59418;Q6QN04;XP_013358413 MODEL 39131304 protein-coding RS1 retinoschisin 1 9009025 protein-coding Rapgef6 Rap guanine nucleotide exchange factor 6 ENCODES a protein that exhibits GTP-dependent protein binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); phosphatidic acid binding (ortholog); INVOLVED IN establishment of endothelial intestinal barrier (ortholog); microvillus assembly (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); immunodeficiency 93 (ortholog); FOUND IN apical plasma membrane (ortholog); centrosome (ortholog); cytosol (ortholog) NW_004955408 2902530 3109273 - 102021314 AGCD01008041;AGCD01008042;AGCD01008043;AGCD01008044;AGCD01008045;AGCD01008046;AGCD01008047;GBCE01055755;XM_005376072 XP_005376129 MODEL 8977867 protein-coding Psd3 pleckstrin and Sec7 domain containing 3 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); Contracture (ortholog); hereditary spastic paraplegia 53 (ortholog); FOUND IN cleavage furrow (ortholog); glutamatergic synapse (ortholog); membrane (ortholog) NW_004955403 42442708 42943314 - 102019347 AGCD01002752;AGCD01002753;AGCD01002754;AGCD01002755;AGCD01002756;AGCD01002757;AGCD01002758;AGCD01002759;AGCD01002760;AGCD01002761;AGCD01002762;AGCD01002763;GBDF01047483;XM_005373608;XM_005373613 XP_005373665;XP_005373670 MODEL 8726625 pseudo LOC102006814 cysteine-rich PDZ-binding protein pseudogene NW_004955433 2469951 2470255 - 102006814 AGCD01031393 MODEL 8722765 pseudo LOC102015537 polyadenylate-binding protein 4 pseudogene NW_004955422 14754359 14755652 + 102015537 AGCD01022864 MODEL 8810371 pseudo LOC102006441 rRNA-processing protein UTP23 homolog pseudogene NW_004955412 35586005 35587704 - 102006441 AGCD01013412 MODEL 8951663 protein-coding Snx1 sorting nexin 1 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); identical protein binding (ortholog); insulin receptor binding (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); endosomal transport (ortholog); intracellular protein transport (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); nemaline myopathy 6 (ortholog); FOUND IN cytoplasm (ortholog); dendritic spine (ortholog); early endosome (ortholog) NW_004955450 11266712 11306014 - 102020402 AGCD01042653;GBDK01008578;XM_005393766;XM_013518974;XM_013518975;XM_013518976;XM_013518977;XM_013518978;XM_013518979 XP_005393823;XP_013374428;XP_013374429;XP_013374430;XP_013374431;XP_013374432;XP_013374433 MODEL 9006513 pseudo LOC102017447 mitochondrial import inner membrane translocase subunit TIM14 pseudogene NW_004955472 3409907 3410297 - 102017447 AGCD01053510 MODEL 8933548 protein-coding Slc25a22 solute carrier family 25 member 22 ENCODES a protein that exhibits amino acid:proton symporter activity (ortholog); L-glutamate transmembrane transporter activity (ortholog); INVOLVED IN L-glutamate transmembrane transport (ortholog); regulation of insulin secretion (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); Chanarin-Dorfman syndrome (ortholog); Costello syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955476 11334508 11338781 + 102010254 AGCD01055451;GBBH01118900;GBDF01154109;XM_013502999 XP_013358453 MODEL 9035732 ncrna LOC102024238 uncharacterized LOC102024238 NW_004955420 25457014 25461027 - 102024238 AGCD01021358;AGCD01021359;GBDF01226054;XR_260755 MODEL 8854352 protein-coding Slitrk6 SLIT and NTRK like family member 6 INVOLVED IN adult locomotory behavior (ortholog); auditory behavior (ortholog); auditory receptor cell morphogenesis (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); chromosome 13q14 deletion syndrome (ortholog); Developmental Disabilities (ortholog); FOUND IN cell periphery (ortholog); cell surface (ortholog); plasma membrane (ortholog) NW_004955404 22738080 22744601 + 102005659 AGCD01003774;GBDK01060369;XM_005374121 XP_005374178 MODEL 8768336 protein-coding Otol1 otolin 1 ENCODES a protein that exhibits calcium ion binding (ortholog); INVOLVED IN otolith mineralization (ortholog); protein homooligomerization (ortholog); FOUND IN extracellular region (ortholog) NW_004955448 11868993 11927595 + 102009126 AGCD01041533;AGCD01041534;AGCD01041535;AGCD01041536;XM_005393135 XP_005393192 MODEL 10085685 ncrna LOC106147000 uncharacterized LOC106147000 NW_004955407 26960613 26967331 + 106147000 AGCD01007541;XR_001231695 MODEL 8859128 protein-coding Penk proenkephalin ENCODES a protein that exhibits opioid peptide activity (ortholog); opioid receptor binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN aggressive behavior (ortholog); behavioral fear response (ortholog); cellular response to cAMP (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); Anhedonia (ortholog); FOUND IN perikaryon; axon (ortholog); axon terminus (ortholog) NW_004955454 15425712 15426685 - 102007624 AGCD01045494;GBDJ01079314;GBDJ01079318;XM_005396126 XP_005396183 MODEL 151707877 snorna SNORD124 small nucleolar RNA, C/D box 124 10141932 ncrna LOC106149826 uncharacterized LOC106149826 NW_004955406 5632808 5635106 + 106149826 AGCD01005733;XR_001236247 MODEL 9042486 protein-coding Phtf1 putative homeodomain transcription factor 1 ASSOCIATED WITH hereditary spastic paraplegia 47 (ortholog); RASopathy (ortholog); FOUND IN cis-Golgi network membrane (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955435 16972120 17025861 - 102011904 AGCD01033343;GBDK01026270;XM_005388977;XM_005388978;XM_005388979;XM_013516424;XR_001234855;XR_001234856 XP_005389034;XP_005389035;XP_005389036;XP_013371878 MODEL 8855012 protein-coding Bri3 brain protein I3 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955460 14165874 14174464 + 102029053 AGCD01048742;GBDF01045177;GBDI01000286;XM_013521167 XP_013376621 MODEL 8755577 protein-coding Rab27a RAB27A, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN antigen processing and presentation (ortholog); blood coagulation (ortholog); complement-dependent cytotoxicity (ortholog); PARTICIPATES IN insulin secretion pathway; ASSOCIATED WITH Bloom syndrome (ortholog); Chediak-Higashi syndrome (ortholog); colorectal cancer (ortholog); FOUND IN apical plasma membrane (ortholog); dendrite (ortholog); exocytic vesicle (ortholog) NW_004955409 588725 621874 + 102012406 AGCD01009156;AGCD01009157;AGCD01009158;GBCQ01179256;XM_005376611;XM_005376612;XM_005376613;XM_005376614 XP_005376668;XP_005376669;XP_005376670;XP_005376671 MODEL 8970289 protein-coding Thtpa thiamine triphosphatase ENCODES a protein that exhibits magnesium ion binding (ortholog); thiamine triphosphate phosphatase activity (ortholog); INVOLVED IN dephosphorylation (ortholog); thiamine diphosphate biosynthetic process (ortholog); thiamine diphosphate metabolic process (ortholog); PARTICIPATES IN thiamine metabolic pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Marsili syndrome (ortholog); FOUND IN cytosol (ortholog) NW_004955409 36803721 36808094 - 102016453 AGCD01010481;AGCD01010482;GBBH01188134;XM_005377061;XM_013510425;XM_013510426;XM_013510427 XP_005377118;XP_013365879;XP_013365880;XP_013365881 MODEL 8773613 protein-coding Emc4 ER membrane protein complex subunit 4 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); ASSOCIATED WITH agenesis of the corpus callosum with peripheral neuropathy (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN EMC complex (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955416 375736 380825 - 102019059 AGCD01016798;GBCB01023546;XM_005381153 XP_005381210 MODEL 9039046 pseudo LOC102012573 40S ribosomal protein S11-like NW_004955526 2916961 2917447 + 102012573 AGCD01069324 MODEL 8716913 protein-coding LOC102018968 ubiquitin-conjugating enzyme E2 D2-like NW_004955525 1602357 1603209 - 102018968 AGCD01069046;GBDF01048294;XM_005409726;XR_001231960 XP_005409783 MODEL 8791595 protein-coding Ncapd3 non-SMC condensin II complex subunit D3 ENCODES a protein that exhibits histone H4K20me1 reader activity (ortholog); INVOLVED IN meiotic chromosome separation (ortholog); mitotic chromosome condensation (ortholog); positive regulation of chromosome segregation (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); Isobutyryl-CoA Dehydrogenase Deficiency (ortholog); FOUND IN condensed chromosome (ortholog); condensed nuclear chromosome (ortholog); condensin complex (ortholog) NW_004955412 34967464 35035103 - 102029491 AGCD01013396;AGCD01013397;GBDJ01114507;XM_005378590 XP_005378647 MODEL 8721022 pseudo LOC102009438 nucleobindin-2 pseudogene NW_004955580 212934 215509 + 102009438 AGCD01075591 MODEL 8893532 protein-coding Septin5 septin 5 ASSOCIATED WITH autistic disorder (ortholog); Bernard-Soulier syndrome (ortholog); Bernard-Soulier Syndrome, Type B (ortholog) NW_004955442 18361072 18369648 - 102006399 AGCD01038004;GBCE01030386;XM_005391774;XM_013517956;XM_013517957;XM_013517958;XM_013517959;XM_013517960 XP_005391831;XP_013373410;XP_013373411;XP_013373412;XP_013373413;XP_013373414 MODEL 39133306 snrna U4 U4 spliceosomal RNA 8946276 ncrna LOC102005374 uncharacterized LOC102005374 NW_004955479 2013640 2022532 + 102005374 AGCD01056260;GBDF01098004;XR_263728 MODEL 9061509 protein-coding Wbp4 WW domain binding protein 4 ENCODES a protein that exhibits proline-rich region binding (ortholog); INVOLVED IN mRNA cis splicing, via spliceosome (ortholog); mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH NEURODEVELOPMENTAL DISORDER WITH HYPOTONIA, FEEDING DIFFICULTIES, FACIAL DYSMORPHISM, AND BRAIN ABNORMALITIES (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog); spliceosomal complex (ortholog) NW_004955404 51046245 51094245 + 102011395 AGCD01004543;AGCD01004544;AGCD01004545;AGCD01004546;AGCD01004547;GBBH01214258;GBCE01024729;XM_013516774;XM_013516775 XP_013372228;XP_013372229 MODEL 8817328 ncrna LOC102011796 uncharacterized LOC102011796 NW_004955433 7192628 7234562 + 102011796 AGCD01031566;AGCD01031567;GBDF01254267;XR_001234703;XR_001234704;XR_261565 MODEL 8744759 protein-coding Rhbdd2 rhomboid domain containing 2 ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); nucleoplasm (ortholog) NW_004955456 14652995 14666155 + 102006543 AGCD01046647;AGCD01046648;GBDF01052883;XM_005396802 XP_005396859 MODEL 8844732 protein-coding LOC102006443 natural killer cells antigen CD94-like NW_004955413 7595934 7604789 - 102006443 AGCD01013826;AGCD01013827;GBDF01001494;XM_005378931;XR_260067;XR_260068 XP_005378988 MODEL 9047114 protein-coding Trim54 tripartite motif containing 54 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN negative regulation of microtubule depolymerization (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2EE (ortholog); mitochondrial DNA depletion syndrome 6 (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN microtubule associated complex (ortholog) NW_004955469 9258946 9277275 + 102026740 AGCD01052498;GBCB01004527;XM_005400479 XP_005400536 MODEL 8795371 protein-coding Slc39a4 solute carrier family 39 member 4 ENCODES a protein that exhibits identical protein binding (ortholog); metal ion binding (ortholog); zinc ion binding (ortholog); INVOLVED IN cellular response to zinc ion starvation (ortholog); intracellular zinc ion homeostasis (ortholog); zinc ion transmembrane transport (ortholog); ASSOCIATED WITH acrodermatitis (ortholog); acrodermatitis enteropathica (ortholog); Brown-Vialetto-Van Laere syndrome 2 (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasmic vesicle (ortholog); plasma membrane (ortholog) NW_004955454 3041316 3047419 - 102005106 AGCD01045048;AGCD01045049;GBDK01284146;XM_005395883 XP_005395940 MODEL 8880610 protein-coding LOC102010548 keratin-associated protein 20-2-like NW_004955407 30234861 30239217 - 102010548 AGCD01007628;AGCD01007629;XM_005375651;XM_013506303 XP_005375708;XP_013361757 MODEL 8983139 protein-coding Spz1 spermatogenic leucine zipper 1 ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); E-box binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Stomach Neoplasms (ortholog); FOUND IN nucleus (ortholog) NW_004955418 29458836 29460519 - 102017018 AGCD01019464;GBDF01007142;XM_005382324 XP_005382381 MODEL 9051180 protein-coding LOC102010985 C-type lectin domain family 2 member F-like NW_004955413 7883706 7902234 + 102010985 AGCD01013835;GBDK01420751;XM_013511366;XM_013511367 XP_013366820;XP_013366821 MODEL 8855280 protein-coding LOC102007943 keratin, type II cuticular Hb3 NW_004955547 2671303 2677998 - 102007943 AGCD01072294;GBDK01416954;XM_005411938 XP_005411995 MODEL 9024714 pseudo LOC102006815 peroxiredoxin-1 pseudogene NW_004955434 1326675 1356641 - 102006815 AGCD01032061;AGCD01032062;AGCD01032063 MODEL 8897813 protein-coding LOC102003660 cytochrome P450 2J2-like NW_004955420 23534311 23545670 + 102003660 AGCD01021248;GBDJ01218648;XM_013513341 XP_013368795 MODEL 8946473 protein-coding Rccd1 RCC1 domain containing 1 ASSOCIATED WITH Bloom syndrome (ortholog); Breast Neoplasms (ortholog); D-2-hydroxyglutaric aciduria 2 (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955416 15013595 15020038 + 102013932 AGCD01017295;AGCD01017296;GBBH01229064;GBCQ01035929;XM_013512477 XP_013367931 MODEL 8872212 protein-coding LOC102015541 olfactory receptor 7C2-like NW_004955495 8384024 8384983 - 102015541 AGCD01062204;XM_005406106 XP_005406163 MODEL 8891668 protein-coding Psd4 pleckstrin and Sec7 domain containing 4 FOUND IN cleavage furrow (ortholog); ruffle membrane (ortholog) NW_004955470 1084318 1125244 - 102020556 AGCD01052625;AGCD01052626;GBDJ01194240;XM_005400583;XM_013522824;XM_013522825;XM_013522826;XR_001237032 XP_005400640;XP_013378278;XP_013378279;XP_013378280 MODEL 8803570 pseudo LOC102010227 coenzyme Q-binding protein COQ10 homolog B, mitochondrial pseudogene NW_004955406 14637868 14638870 + 102010227 AGCD01005967 MODEL 8897895 protein-coding Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 ENCODES a protein that exhibits adenylylsulfate kinase activity (ortholog); protein homodimerization activity (ortholog); sulfate adenylyltransferase (ATP) activity (ortholog); INVOLVED IN 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process (ortholog); sulfate assimilation (ortholog); PARTICIPATES IN selenoamino acid metabolic pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955496 1993423 2057384 + 102006257 AGCD01062263;GBCQ01037113;XM_005406213;XM_005406214;XM_013505422;XM_013505423;XM_013505424 XP_005406270;XP_005406271;XP_013360876;XP_013360877;XP_013360878 MODEL 39133311 snrna U4 U4 spliceosomal RNA 8856259 protein-coding LOC102017451 zinc finger protein 490-like NW_004955415 33173538 33184014 + 102017451 AGCD01016754;AGCD01016755;GBCE01101349;GBDI01153439;XM_005381149 XP_005381206 MODEL 8859263 protein-coding Lgals9 galectin 9 ENCODES a protein that exhibits carbohydrate binding (ortholog); disaccharide binding (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to type II interferon (ortholog); cellular response to virus (ortholog); ERK1 and ERK2 cascade (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); nephritis (ortholog); Pneumococcal Meningitis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular space (ortholog) NW_004955481 5234125 5249564 - 102011003 AGCD01056965;GBDI01000534;XM_013503499;XM_013503501;XM_013503502;XM_013503503;XM_013503504;XM_013503505;XM_013503506;XM_013503507;XM_013503508 XP_013358953;XP_013358955;XP_013358956;XP_013358957;XP_013358958;XP_013358959;XP_013358960;XP_013358961;XP_013358962 MODEL 8740003 ncrna LOC102011372 uncharacterized LOC102011372 NW_004955445 18244255 18269680 - 102011372 AGCD01039901;GBCQ01003080;XR_001235583;XR_001235584;XR_001235585;XR_001235586;XR_001235587;XR_001235588;XR_001235589;XR_001235590;XR_001235591;XR_001235592 MODEL 8783366 protein-coding Slc25a23 solute carrier family 25 member 23 ENCODES a protein that exhibits adenine nucleotide transmembrane transporter activity (ortholog); ADP:phosphate antiporter activity (ortholog); ATP:phosphate antiporter activity (ortholog); INVOLVED IN adenine nucleotide transport (ortholog); calcium import into the mitochondrion (ortholog); cellular response to calcium ion (ortholog); ASSOCIATED WITH mucolipidosis type IV (ortholog); FOUND IN mitochondrion (ortholog) NW_004955495 3155024 3171279 + 102004728 AGCD01061828;AGCD01061829;AGCD01061830;AGCD01061831;GBBH01117839;GBDI01080406;XM_013505307 XP_013360761 MODEL 9025440 protein-coding Plpp5 phospholipid phosphatase 5 ENCODES a protein that exhibits diacylglycerol diphosphate phosphatase activity (ortholog); phosphatidate phosphatase activity (ortholog); INVOLVED IN phospholipid dephosphorylation (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 54 (ortholog); hypogonadotropic hypogonadism 2 with or without anosmia (ortholog); paraplegia (ortholog) NW_004955463 13859492 13864104 - 102023340 AGCD01049892;GBDJ01276219;XM_005398444;XM_005398446 XP_005398501;XP_005398503 MODEL 8933519 protein-coding Septin6 septin 6 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN axon terminus (ortholog); cleavage furrow (ortholog); presynapse (ortholog) NW_004955534 306691 381799 + 102009315 AGCD01070448;GBBH01006609;XM_005410435;XM_005410437;XM_005410438;XM_013507703;XM_013507704;XM_013507705;XM_013507706 XP_005410492;XP_005410494;XP_005410495;XP_013363157;XP_013363158;XP_013363159;XP_013363160 MODEL 9054274 protein-coding Otop1 otopetrin 1 ENCODES a protein that exhibits proton channel activity (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); detection of gravity (ortholog); inner ear morphogenesis (ortholog); ASSOCIATED WITH Ellis-Van Creveld syndrome (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog) NW_004955514 5407931 5436547 + 102010614 AGCD01067154;GBBH01036970;XM_005408861 XP_005408918 MODEL 9062659 protein-coding Pepd peptidase D ENCODES a protein that exhibits peptidase activity (ortholog); proline dipeptidase activity (ortholog); INVOLVED IN negative regulation of programmed cell death (ortholog); proteolysis (ortholog); ASSOCIATED WITH chronic ulcer of skin (ortholog); disease by infectious agent (ortholog); genetic disease (ortholog) NW_004955468 3147871 3277294 - 102027507 AGCD01051857;AGCD01051858;AGCD01051859;GBBH01004035;XM_013522477;XM_013522478 XP_013377931;XP_013377932 MODEL 8949353 ncrna LOC102011798 uncharacterized LOC102011798 NW_004955521 1606251 1622200 - 102011798 AGCD01068190;GBDF01280812;XR_001231893;XR_001231894 MODEL 9008798 protein-coding Prkx protein kinase cAMP-dependent X-linked catalytic subunit ENCODES a protein that exhibits cAMP-dependent protein kinase activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell adhesion (ortholog); cell-substrate adhesion (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955499 2167252 2227510 - 102013848 AGCD01063419;AGCD01063420;AGCD01063421;AGCD01063422;AGCD01063423;AGCD01063424;AGCD01063425;AGCD01063426;AGCD01063427;AGCD01063428;GBBH01002093;GBCQ01174628;XM_013505599 XP_013361053 MODEL 8954792 ncrna LOC102021532 uncharacterized LOC102021532 NW_004955410 9692203 9701655 + 102021532 AGCD01010773;GBDF01305484;XR_259828 MODEL 9042324 protein-coding Tp53inp1 tumor protein p53 inducible nuclear protein 1 ENCODES a protein that exhibits antioxidant activity (ortholog); INVOLVED IN autophagic cell death (ortholog); cellular response to ethanol (ortholog); cellular response to hydroperoxide (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome 1 (ortholog); FOUND IN autophagosome (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955417 11063217 11079389 - 102030306 AGCD01018119;GBBH01088065;GBDI01139432;XM_005381823 XP_005381880 MODEL 9045371 protein-coding Emc6 ER membrane protein complex subunit 6 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); ASSOCIATED WITH Canavan disease (ortholog); FOUND IN EMC complex (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955467 13144659 13146434 - 102020231 AGCD01051667;GBBH01164107;XM_005399715 XP_005399772 MODEL 8843304 protein-coding Trim55 tripartite motif containing 55 ENCODES a protein that exhibits identical protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN diapedesis (ortholog); leukocyte migration involved in inflammatory response (ortholog); macrophage migration (ortholog) NW_004955444 12992362 13034621 - 102018137 AGCD01039088;GBCB01022555;XM_005392155;XM_005392156;XM_005392157;XM_005392158 XP_005392212;XP_005392213;XP_005392214;XP_005392215 MODEL 9015917 protein-coding Rab27b RAB27B, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN anterograde axonal protein transport (ortholog); multivesicular body sorting pathway (ortholog); positive regulation of exocytosis (ortholog); ASSOCIATED WITH Disease Progression (ortholog); intellectual disability (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN apical plasma membrane (ortholog); Golgi apparatus (ortholog); Golgi stack (ortholog) NW_004955402 39357500 39415530 + 102026492 AGCD01000980;AGCD01000981;GBCE01129930;XM_005372952;XM_013510869 XP_005373009;XP_013366323 MODEL 8786929 protein-coding Ptpn21 protein tyrosine phosphatase non-receptor type 21 ENCODES a protein that exhibits protein tyrosine phosphatase activity (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Leber congenital amaurosis 3 (ortholog); myoepithelioma (ortholog) NW_004955438 11087906 11162592 - 102006283 AGCD01035224;AGCD01035225;AGCD01035226;AGCD01035227;GBDJ01312275;XM_005390257;XM_013517163;XM_013517164;XM_013517165;XM_013517166 XP_005390314;XP_013372617;XP_013372618;XP_013372619;XP_013372620 MODEL 8764958 ncrna LOC102008318 uncharacterized LOC102008318 NW_004955484 4122273 4129579 - 102008318 AGCD01058202;GBDF01081938;XR_263880;XR_263882 MODEL 9063202 protein-coding Pkig cAMP-dependent protein kinase inhibitor gamma ENCODES a protein that exhibits cAMP-dependent protein kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of protein import into nucleus (ortholog); negative regulation of protein kinase activity (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog) NW_004955445 12717962 12818734 - 102017284 AGCD01039761;AGCD01039762;GBDJ01085855;XM_005392468;XM_005392470 XP_005392525;XP_005392527 MODEL 9011464 protein-coding Snx10 sorting nexin 10 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); ATPase binding (ortholog); INVOLVED IN bone mineralization involved in bone maturation (ortholog); bone remodeling (ortholog); bone resorption (ortholog); ASSOCIATED WITH autosomal recessive osteopetrosis 8 (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN apical cytoplasm (ortholog); centrosome (ortholog); endoplasmic reticulum (ortholog) NW_004955410 28137426 28178814 + 102025219 AGCD01011242;AGCD01011243;AGCD01011244;GBBH01006766;GBCQ01123481;XM_013510607 XP_013366061 MODEL 9063594 protein-coding Septin7 septin 7 ENCODES a protein that exhibits identical protein binding (ortholog); structural constituent of postsynapse (ortholog); INVOLVED IN collateral sprouting (ortholog); cortical cytoskeleton organization (ortholog); D-glucose import (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN axon terminus (ortholog); axoneme (ortholog); cell cortex (ortholog) NW_004955460 7287452 7374747 - 102005571 AGCD01048480;GBCE01002152;XM_005397770;XM_005397771;XM_013521220 XP_005397827;XP_005397828;XP_013376674 MODEL 8805575 ncrna LOC102005378 uncharacterized LOC102005378 NW_004955418 11451076 11451817 - 102005378 AGCD01019004;GBDF01090330;XR_260556 MODEL 8943019 protein-coding Trpc3 transient receptor potential cation channel subfamily C member 3 ENCODES a protein that exhibits calcium channel activity (ortholog); calcium-activated cation channel activity (ortholog); inositol 1,4,5 trisphosphate binding (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); positive regulation of calcium ion transport into cytosol (ortholog); positive regulation of cardiac muscle hypertrophy in response to stress (ortholog); ASSOCIATED WITH Albuminuria (ortholog); Bardet-Biedl syndrome (ortholog); bipolar disorder (ortholog); FOUND IN plasma membrane (ortholog) NW_004955428 18628951 18678525 + 102017360 AGCD01028069;GBCB01100950;XM_005386779;XM_013515247 XP_005386836;XP_013370701 MODEL 8829035 protein-coding LOC102018607 probable ATP-dependent RNA helicase DDX5 NW_004955420 170507 219822 - 102018607 AGCD01020535;AGCD01020536;AGCD01020537;AGCD01020538;GBBH01074208;XM_013513565;XR_001233769;XR_001233770;XR_001233771;XR_001233772;XR_001233773 XP_013369019 MODEL 8864890 protein-coding Sned1 sushi, nidogen and EGF like domains 1 ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN extracellular matrix (ortholog) NW_004955542 587159 628159 - 102012475 AGCD01071474;GBCE01117402;XM_005411144;XM_013508057;XM_013508058;XM_013508059 XP_005411201;XP_013363511;XP_013363512;XP_013363513 MODEL 39132269 snorna SNORD127 small nucleolar RNA, C/D box 127 8721618 protein-coding Rce1 Ras converting CAAX endopeptidase 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); exopeptidase activity (ortholog); INVOLVED IN CAAX-box protein maturation (ortholog); CAAX-box protein processing (ortholog); protein prenylation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); immunodeficiency 90 (ortholog); intellectual disability (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955422 18538251 18541322 - 102004171 AGCD01022951;GBCQ01101305;XM_005384377;XM_013513907;XM_013513908 XP_005384434;XP_013369361;XP_013369362 MODEL 8751852 ncrna LOC102017452 uncharacterized LOC102017452 NW_004955477 7292845 7296633 - 102017452 AGCD01055613;GBDF01076495;XR_263662 MODEL 8994423 protein-coding LOC102023249 T-cell surface glycoprotein CD1b3-like NW_004955468 10119937 10124011 + 102023249 AGCD01052067;GBBH01190249;XM_005400143;XM_005400144;XM_013522489 XP_005400200;XP_005400201;XP_013377943 MODEL 8990220 protein-coding Polr2m RNA polymerase II subunit M ENCODES a protein that exhibits RNA polymerase II complex binding (ortholog); INVOLVED IN maintenance of ER location (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN neuronal cell body (ortholog); nuclear envelope (ortholog); RNA polymerase II, core complex (ortholog) NW_004955450 16633975 16642085 - 102018875 AGCD01042847;AGCD01042848;GBDI01062092;XM_005393846 XP_005393903 MODEL 8802796 protein-coding LOC102006450 cytochrome c oxidase assembly factor 5 INVOLVED IN leukocyte differentiation (ortholog); multicellular organism growth (ortholog); spleen development (ortholog); ASSOCIATED WITH mitochondrial complex IV deficiency nuclear type 2 (ortholog); mitochondrial complex IV deficiency nuclear type 9 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955470 5042072 5051007 - 102006450 AGCD01052743;GBCE01159196;XM_005400725 XP_005400782 MODEL 9024014 protein-coding Phtf2 putative homeodomain transcription factor 2 ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955410 7344526 7442802 - 102009585 AGCD01010712;AGCD01010713;AGCD01010714;GBCB01020131;XM_005377206;XM_005377207;XM_005377208;XM_005377209;XM_013510512 XP_005377263;XP_005377264;XP_005377265;XP_005377266;XP_013365966 MODEL 8954386 protein-coding Rsad1 radical S-adenosyl methionine domain containing 1 ENCODES a protein that exhibits heme binding (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN mitochondrion (ortholog) NW_004955451 11257105 11273884 - 102012269 AGCD01043343;AGCD01043344;AGCD01043345;GBDK01430782;XM_005394167;XM_005394168;XM_005394169 XP_005394224;XP_005394225;XP_005394226 MODEL 8792457 ncrna LOC102012575 uncharacterized LOC102012575 NW_004955437 2310695 2312191 + 102012575 AGCD01034263;XR_261833 MODEL 8806460 ncrna LOC102009439 uncharacterized LOC102009439 NW_004955448 13394879 13451616 + 102009439 AGCD01041588;AGCD01041589;AGCD01041590;AGCD01041591;GBDK01000836;XR_262470 MODEL 8742517 protein-coding LOC102024243 olfactory receptor 2F1-like NW_004955491 318142 319272 + 102024243 AGCD01060329;GBDF01212144;XM_005404880 XP_005404937 MODEL 10124853 ncrna LOC106147001 uncharacterized LOC106147001 NW_004955407 29957305 29963756 - 106147001 AGCD01007621;GBDF01076088;XR_001231696 MODEL 8922241 protein-coding Ptpn22 protein tyrosine phosphatase non-receptor type 22 ENCODES a protein that exhibits kinase binding (ortholog); phosphatase activity (ortholog); protein tyrosine kinase binding (ortholog); INVOLVED IN cellular response to muramyl dipeptide (ortholog); lipopolysaccharide-mediated signaling pathway (ortholog); negative regulation of autophagy (ortholog); ASSOCIATED WITH Addison's disease (ortholog); alopecia areata (ortholog); Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); nucleus (ortholog) NW_004955435 17082762 17139067 - 102014165 AGCD01033345;GBDK01393931;XM_005388984 XP_005389041 MODEL 8917860 protein-coding Slk STE20 like kinase ENCODES a protein that exhibits histone kinase activity (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to tumor necrosis factor (ortholog); cellular response to type II interferon (ortholog); cytoplasmic microtubule organization (ortholog); ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); Reperfusion Injury (ortholog); substance-related disorder (ortholog); FOUND IN cell leading edge (ortholog); cytoplasm (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955485 6617698 6685220 - 102027985 AGCD01058622;AGCD01058623;AGCD01058624;AGCD01058625;GBDF01188499;GBDI01178670;XM_005403794 XP_005403851 MODEL 39133312 snrna U4 U4 spliceosomal RNA 8879513 protein-coding LOC102010229 keratin-associated protein 20-2-like NW_004955407 30229986 30230156 + 102010229 AGCD01007628;XM_005375650 XP_005375707 MODEL 10352418 ncrna LOC106149827 uncharacterized LOC106149827 NW_004955406 5622470 5632650 - 106149827 AGCD01005733;GBDJ01343424;XR_001236248 MODEL 9021599 protein-coding Bri3bp BRI3 binding protein FOUND IN mitochondrion (ortholog) NW_004955482 4710937 4716534 - 102026528 AGCD01057306;GBCQ01176014;GBDF01123268;XM_013503743 XP_013359197 MODEL 8938337 protein-coding Pcsk6 proprotein convertase subtilisin/kexin type 6 ENCODES a protein that exhibits endopeptidase activity (ortholog); heparin binding (ortholog); nerve growth factor binding (ortholog); INVOLVED IN determination of left/right symmetry (ortholog); glycoprotein metabolic process (ortholog); nerve growth factor production (ortholog); FOUND IN cell surface (ortholog); collagen-containing extracellular matrix (ortholog); extracellular space (ortholog) NW_004955416 28184768 28314697 - 102019694 AGCD01017626;GBCB01089002;XM_013512588;XM_013512589 XP_013368042;XP_013368043 MODEL 8887516 protein-coding Plpp6 phospholipid phosphatase 6 ENCODES a protein that exhibits isoprenoid diphosphate phosphatase activity (ortholog); lipid phosphatase activity (ortholog); lysophosphatidic acid phosphatase activity (ortholog); INVOLVED IN farnesyl diphosphate catabolic process (ortholog); geranyl diphosphate metabolic process (ortholog); geranylgeranyl diphosphate catabolic process (ortholog); ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); nuclear membrane (ortholog) NW_004955434 8953069 8955866 + 102024606 AGCD01032281;GBCE01162872;XM_005415386 XP_005415443 MODEL 8798948 protein-coding Lgalsl galectin like ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955424 19955858 19962170 - 102028437 AGCD01024840;GBCE01013010;GBDI01217236;XM_013514741 XP_013370195 MODEL 8749593 protein-coding Ncapg non-SMC condensin I complex subunit G INVOLVED IN mitotic chromosome condensation (ortholog); positive regulation of chromosome condensation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Disease Progression (ortholog); Endometrial Neoplasms (ortholog); FOUND IN condensed chromosome (ortholog); condensed chromosome, centromeric region (ortholog); condensin complex (ortholog) NW_004955480 6399891 6430617 - 102007012 AGCD01056684;GBDF01167178;XM_005402493 XP_005402550 MODEL 8785810 protein-coding Otop2 otopetrin 2 ENCODES a protein that exhibits proton channel activity (ortholog); INVOLVED IN proton transmembrane transport (ortholog) NW_004955553 1796015 1804652 + 102016524 AGCD01072900;XM_005412262 XP_005412319 MODEL 8999395 pseudo LOC102006818 protein SET-like NW_004955436 20911043 20912325 + 102006818 AGCD01034043 MODEL 8849982 ncrna LOC102015542 uncharacterized LOC102015542 NW_004955497 2576338 2582975 - 102015542 AGCD01062511;GBDF01160791;XR_001231429 MODEL 9017552 ncrna LOC102008323 uncharacterized LOC102008323 NW_004955421 4100911 4102982 - 102008323 AGCD01021680;GBDF01307160;XR_260787 MODEL 8840265 protein-coding Emc7 ER membrane protein complex subunit 7 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN EMC complex (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955416 459668 482562 + 102022189 AGCD01016802;AGCD01016803;AGCD01016804;GBDF01007726;XM_005381163 XP_005381220 MODEL 8726944 protein-coding Rab28 RAB28, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); cone dystrophy (ortholog); cone-rod dystrophy (ortholog); FOUND IN ciliary basal body (ortholog); ciliary rootlet (ortholog) NW_004955480 10220811 10374021 + 102021555 AGCD01056760;AGCD01056761;AGCD01056762;AGCD01056763;AGCD01056764;AGCD01056765;AGCD01056766;GBCE01031034;XM_005402540;XM_005402541;XM_013503323;XM_013503324;XM_013503325;XM_013503326;XR_001230910 XP_005402597;XP_005402598;XP_013358777;XP_013358778;XP_013358779;XP_013358780 MODEL 8923840 protein-coding Pklr pyruvate kinase L/R ENCODES a protein that exhibits monosaccharide binding (ortholog); pyruvate kinase activity (ortholog); INVOLVED IN cellular response to epinephrine stimulus (ortholog); cellular response to insulin stimulus (ortholog); glycolytic process (ortholog); PARTICIPATES IN Fanconi syndrome pathway; forkhead class A signaling pathway; glycogen storage disease type VII pathway; ASSOCIATED WITH Burns (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); congenital nonspherocytic hemolytic anemia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955545 1742432 1749632 - 102004859 AGCD01071869;GBCQ01174475;XM_005411597;XM_005411598;XM_013508344;XM_013508345;XM_013508346;XM_013508347 XP_005411654;XP_005411655;XP_013363798;XP_013363799;XP_013363800;XP_013363801 MODEL 8733975 protein-coding Psen1 presenilin 1 ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); aspartic-type endopeptidase activity (ortholog); ATPase binding (ortholog); INVOLVED IN amyloid precursor protein catabolic process (ortholog); amyloid precursor protein metabolic process (ortholog); amyloid-beta formation (ortholog); PARTICIPATES IN Notch signaling pathway; Notch signaling pathway; syndecan signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Alzheimer's disease 3 (ortholog); Alzheimer's disease 4 (ortholog); FOUND IN aggresome (ortholog); axon (ortholog); cell cortex (ortholog) NW_004955523 2128529 2210737 - 102029108 AGCD01068558;AGCD01068559;AGCD01068560;GBDF01040780;XM_005409427;XM_005409428;XR_001231938 XP_005409484;XP_005409485 MODEL 8819795 protein-coding Rapgefl1 Rap guanine nucleotide exchange factor like 1 ASSOCIATED WITH familial cold autoinflammatory syndrome 2 (ortholog); hypertrophic cardiomyopathy 25 (ortholog); prostate cancer (ortholog) NW_004955451 14802094 14818096 + 102021076 AGCD01043573;AGCD01043574;AGCD01043575;GBDJ01262942;XM_013519122 XP_013374576 MODEL 8753248 protein-coding Thumpd1 THUMP domain 1 NAT10 acetyltransferase adaptor ASSOCIATED WITH genetic disease (ortholog); NEURODEVELOPMENTAL DISORDER WITH SPEECH DELAY AND VARIABLE OCULAR ANOMALIES (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955493 32326 40283 - 102027865 AGCD01060835;GBCE01097709;XM_005405026 XP_005405083 MODEL 9059415 protein-coding Slc25a24 solute carrier family 25 member 24 ENCODES a protein that exhibits adenine nucleotide transmembrane transporter activity (ortholog); ADP:phosphate antiporter activity (ortholog); ATP transmembrane transporter activity (ortholog); INVOLVED IN adenine nucleotide transport (ortholog); cellular response to calcium ion (ortholog); cellular response to oxidative stress (ortholog); ASSOCIATED WITH autistic disorder (ortholog); dementia (ortholog); epilepsy with generalized tonic-clonic seizures (ortholog); FOUND IN membrane (ortholog); mitochondrion (ortholog) NW_004955435 11895475 11933153 - 102017695 AGCD01033126;GBCQ01062812;XM_005388827;XM_013516545 XP_005388884;XP_013371999 MODEL 8974501 protein-coding Snf8 SNF8 subunit of ESCRT-II ENCODES a protein that exhibits channel regulator activity (ortholog); lipid binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN early endosome to late endosome transport (ortholog); endocytic recycling (ortholog); macroautophagy (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH Developmental and Epileptic Encephalopathy 115 (ortholog); hereditary breast ovarian cancer syndrome (ortholog); Hirschsprung's disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endosome membrane (ortholog) NW_004955451 12396625 12406014 + 102029141 AGCD01043392;GBDI01006108;XM_005394225 XP_005394282 MODEL 8913441 protein-coding Prl prolactin INVOLVED IN cell population proliferation (ortholog); cellular response to ethanol (ortholog); cellular response to hormone stimulus (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); adenoma (ortholog); alcohol dependence (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog); secretory granule (ortholog) NW_004955483 4495257 4503377 + 102014360 AGCD01057742;GBCE01142445;XM_005403379 XP_005403436 MODEL 8859322 protein-coding LOC102011799 uncharacterized LOC102011799 NW_004955524 3971442 3983883 + 102011799 AGCD01068941;GBDK01315273;XM_005409534;XM_013507300;XM_013507301 XP_005409591;XP_013362754;XP_013362755 MODEL 8716687 protein-coding LOC102010566 olfactory receptor 151-like NW_004955412 25630768 25631700 + 102010566 AGCD01013166;XM_005378428 XP_005378485 MODEL 8939040 protein-coding LOC102023253 olfactory receptor 52E1-like NW_004955414 20701545 20702480 + 102023253 AGCD01015387;XM_013511764 XP_013367218 MODEL 8740679 protein-coding Per1 period circadian regulator 1 ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA-binding transcription factor binding (ortholog); E-box binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); alcohol withdrawal syndrome (ortholog); antidepressant type abuse (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955467 8798436 8813369 + 102023995 AGCD01051472;GBDF01050299;XM_005399432;XM_005399433 XP_005399489;XP_005399490 MODEL 9061747 protein-coding LOC102018969 glutathione S-transferase B-like NW_004955435 13090324 13096199 + 102018969 AGCD01033181;AGCD01033182;AGCD01033183;GBCQ01003519;XM_013516462 XP_013371916 MODEL 9013605 ncrna LOC102021533 uncharacterized LOC102021533 NW_004955410 19329312 19334964 - 102021533 AGCD01011019;GBDK01421036;XR_259850 MODEL 8729790 protein-coding Plpp7 phospholipid phosphatase 7 (inactive) ENCODES a protein that exhibits lipid phosphatase activity (ortholog); INVOLVED IN negative regulation of myotube differentiation (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN nuclear envelope (ortholog) NW_004955513 1081748 1092025 + 102021379 AGCD01066840;AGCD01066841;GBCB01005805;XM_005408361 XP_005408418 MODEL 9010015 protein-coding Pcsk7 proprotein convertase subtilisin/kexin type 7 ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN protein processing (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); corpus callosum lipoma (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955412 18530378 18553725 - 102024885 AGCD01012944;GBBH01088329;XM_005378198;XM_013511024;XM_013511025 XP_005378255;XP_013366478;XP_013366479 MODEL 8946919 protein-coding LOC102007945 kallikrein-4-like NW_004955558 1622962 1627760 + 102007945 AGCD01073453;GBDF01079521;XM_013508853 XP_013364307 MODEL 9003323 protein-coding Tp53inp2 tumor protein p53 inducible nuclear protein 2 ENCODES a protein that exhibits ubiquitin binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); macroautophagy (ortholog); negative regulation of protein localization (ortholog); ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); long QT syndrome (ortholog); FOUND IN autophagosome (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955422 26640239 26649291 - 102021252 AGCD01023294;GBDK01146060;XM_005384824;XM_005384825;XM_005384826;XM_013514089 XP_005384881;XP_005384882;XP_005384883;XP_013369543 MODEL 8859869 protein-coding Trim56 tripartite motif containing 56 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN defense response to virus (ortholog); host-mediated suppression of symbiont invasion (ortholog); innate immune response (ortholog); ASSOCIATED WITH Plasminogen Activator Inhibitor-1 Deficiency (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog) NW_004955456 16181890 16185598 - 102028268 AGCD01046693;GBBH01228287;XM_005396871;XM_013520643 XP_005396928;XP_013376097 MODEL 8773316 protein-coding Wdcp WD repeat and coiled coil containing ENCODES a protein that exhibits kinase binding (ortholog); INVOLVED IN protein complex oligomerization (ortholog) NW_004955469 6236653 6261753 - 102023140 AGCD01052374;AGCD01052375;GBCE01018761;XM_005400370;XM_005400371 XP_005400427;XP_005400428 MODEL 9013125 protein-coding Ncapg2 non-SMC condensin II complex subunit G2 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); histone H4K20me1 reader activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); inner cell mass cell proliferation (ortholog); positive regulation of chromosome segregation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); holoprosencephaly 3 (ortholog); Kahn-Kahn-Katsanis Syndrome (ortholog); FOUND IN condensed nuclear chromosome (ortholog); condensin complex (ortholog); nuclear speck (ortholog) NW_004955579 896507 955515 - 102005427 AGCD01075558;AGCD01075559;GBBH01076376;GBBH01076377;XM_005414102 XP_005414159 MODEL 8982731 protein-coding Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 ENCODES a protein that exhibits adenylylsulfate kinase activity (ortholog); sulfate adenylyltransferase (ATP) activity (ortholog); INVOLVED IN 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process (ortholog); blood coagulation (ortholog); bone development (ortholog); PARTICIPATES IN sulfite oxidase deficiency pathway; ASSOCIATED WITH brachyolmia (ortholog); genetic disease (ortholog); juvenile polyposis syndrome (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955425 5186232 5259080 - 102027425 AGCD01025336;GBBH01164256;GBDK01231823;XM_005385890 XP_005385947 MODEL 8811866 ncrna LOC102005384 uncharacterized LOC102005384 NW_004955488 8933146 8961329 - 102005384 AGCD01059736;AGCD01059737;AGCD01059738;AGCD01059739;GBDF01190452;XR_264007 MODEL 8957456 pseudo LOC102018614 olfactory receptor 7E24-like NW_004955495 629283 630229 - 102018614 AGCD01061645 MODEL 8732083 ncrna LOC102006819 uncharacterized LOC102006819 NW_004955532 2185792 2187582 + 102006819 AGCD01070222;GBCQ01093416;XR_001232007;XR_001232008;XR_001232009 MODEL 9015159 protein-coding LOC102011373 zinc finger protein 664-like NW_004955569 341373 356350 + 102011373 AGCD01074574;AGCD01074575;XM_005413508 XP_005413565 MODEL 8728075 protein-coding Rhbdd3 rhomboid domain containing 3 INVOLVED IN liver development (ortholog); MAPK cascade (ortholog); negative regulation of natural killer cell activation (ortholog); ASSOCIATED WITH Breast Cancer, Familial (ortholog); substance-related disorder (ortholog); vestibular schwannomatosis (ortholog) NW_004955455 3564867 3570910 - 102003730 AGCD01045636;GBDF01047829;XM_005396194;XM_005396195;XM_005396196 XP_005396251;XP_005396252;XP_005396253 MODEL 39133313 snrna U4 U4 spliceosomal RNA 8995536 protein-coding Slc39a5 solute carrier family 39 member 5 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); cellular response to zinc ion starvation (ortholog); eye development (ortholog); ASSOCIATED WITH Myopia 24, Autosomal Dominant (ortholog); FOUND IN basolateral plasma membrane (ortholog) NW_004955458 3843492 3849794 + 102005568 AGCD01047351;GBDK01295504;XM_005397299;XM_005397300;XM_005397301 XP_005397356;XP_005397357;XP_005397358 MODEL 8898264 protein-coding Ptpn23 protein tyrosine phosphatase non-receptor type 23 ENCODES a protein that exhibits protein kinase binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN cilium assembly (ortholog); early endosome to late endosome transport (ortholog); endocytic recycling (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); Luscan-Lumish Syndrome (ortholog); FOUND IN centriolar satellite (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955420 24869737 24897196 - 102014365 AGCD01021337;AGCD01021338;GBDF01119078;XM_005383401 XP_005383458 MODEL 8968174 protein-coding LOC102010231 uncharacterized LOC102010231 NW_004955408 30891040 30894592 + 102010231 AGCD01008817;GBDF01045340;XM_005376478;XR_259728 XP_005376535 MODEL 8777344 protein-coding Sqle squalene epoxidase ENCODES a protein that exhibits FAD binding (ortholog); squalene monooxygenase activity (ortholog); INVOLVED IN cholesterol metabolic process (ortholog); lipid droplet formation (ortholog); regulation of cell population proliferation (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH cholelithiasis (ortholog); Experimental Liver Neoplasms (ortholog); Hypercholesterolemia (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); membrane (ortholog) NW_004955461 121886 143389 + 102028063 AGCD01048791;GBDF01002848;XM_005397981 XP_005398038 MODEL 8860081 protein-coding Rchy1 ring finger and CHY zinc finger domain containing 1 ENCODES a protein that exhibits p53 binding (ortholog); protein homodimerization activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); positive regulation of protein ubiquitination (ortholog); protein autoubiquitination (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH Brain Injuries (ortholog); Disease Progression (ortholog); Lung Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955474 1463817 1475677 - 102009275 AGCD01054255;GBCB01021660;GBCE01097442;XM_013502758 XP_013358212 MODEL 8838553 protein-coding Polr3a RNA polymerase III subunit A ENCODES a protein that exhibits chromatin binding (ortholog); DNA-directed RNA polymerase activity (ortholog); DNA/RNA hybrid binding (ortholog); INVOLVED IN innate immune response (ortholog); positive regulation of interferon-beta production (ortholog); tRNA transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); Diamond-Blackfan anemia 3 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955437 14446059 14483336 + 102021175 AGCD01034672;AGCD01034673;GBDI01264392;XM_005389899 XP_005389956 MODEL 8864597 protein-coding LOC102003661 starch-binding domain-containing protein 1-like NW_004955421 9799138 9801408 - 102003661 AGCD01021858;XM_013513646 XP_013369100 MODEL 8968765 protein-coding Rhbdf1 rhomboid 5 homolog 1 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); INVOLVED IN cell migration (ortholog); cell population proliferation (ortholog); negative regulation of protein secretion (ortholog); ASSOCIATED WITH familial focal epilepsy with variable foci 3 (ortholog); Wolff-Parkinson-White syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog) NW_004955442 17090962 17098068 + 102009327 AGCD01037937;GBDJ01079685;GBDJ01079692;XM_005391681 XP_005391738 MODEL 9034594 protein-coding Snip1 Smad nuclear interacting protein 1 ENCODES a protein that exhibits transcription regulator inhibitor activity (ortholog); INVOLVED IN miRNA processing (ortholog); mRNA splicing, via spliceosome (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH ARTERIAL DISSECTION (ortholog); benign epilepsy with centrotemporal spikes (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955452 15352080 15365545 - 102011397 AGCD01044486;GBDF01082251;XM_005395208 XP_005395265 MODEL 8776090 protein-coding Lgi1 leucine rich glioma inactivated 1 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN axon guidance (ortholog); neuron projection development (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); epilepsy (ortholog); epilepsy with generalized tonic-clonic seizures (ortholog); FOUND IN axon initial segment (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955507 268032 304949 + 102003163 AGCD01065465;AGCD01065466;GBBH01057240;XM_005407523;XM_005407524;XM_013506244 XP_005407580;XP_005407581;XP_013361698 MODEL 8778396 protein-coding Rsad2 radical S-adenosyl methionine domain containing 2 ENCODES a protein that exhibits 4 iron, 4 sulfur cluster binding (ortholog); INVOLVED IN CD4-positive, alpha-beta T cell activation (ortholog); CD4-positive, alpha-beta T cell differentiation (ortholog); defense response to virus (ortholog); ASSOCIATED WITH respiratory syncytial virus infectious disease; Animal Disease Models (ortholog); congestive heart failure (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); fibrillar center (ortholog) NW_004955487 1988226 2001731 - 102013727 AGCD01059256;GBDK01397678;XM_005404363 XP_005404420 MODEL 9036048 ncrna LOC102007947 uncharacterized LOC102007947 NW_004955443 8832249 8845558 - 102007947 AGCD01038338;GBDJ01378112;XR_001235447;XR_001235448;XR_262198;XR_262199 MODEL 8883495 pseudo LOC102015546 heterogeneous nuclear ribonucleoprotein A3-like NW_004955502 7680400 7683778 - 102015546 AGCD01064457 MODEL 9058529 ncrna LOC102008325 uncharacterized LOC102008325 NW_004955491 2918171 2920095 + 102008325 AGCD01060390;GBDF01117852;XR_264034 MODEL 8962611 protein-coding LOC102009441 zinc finger protein 211 NW_004955584 469784 476250 + 102009441 AGCD01075942;GBDK01431604;XM_005414361;XM_005414362;XM_005414363;XM_005414365 XP_005414418;XP_005414419;XP_005414420;XP_005414422 MODEL 39131798 snorna SNORD12B small nucleolar RNA, C/D box 12B 8731399 protein-coding Plppr1 phospholipid phosphatase related 1 ENCODES a protein that exhibits lysophosphatidic acid phosphatase activity (ortholog); INVOLVED IN nervous system development (ortholog); phospholipid dephosphorylation (ortholog); FOUND IN neuron projection (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955419 24544868 24809419 - 102010266 AGCD01020350;AGCD01020351;AGCD01020352;AGCD01020353;AGCD01020354;AGCD01020355;AGCD01020356;GBCE01026760;XM_005382804;XM_005382805;XM_013513312 XP_005382861;XP_005382862;XP_013368766 MODEL 8883518 protein-coding Trim58 tripartite motif containing 58 ENCODES a protein that exhibits dynein heavy chain binding (ortholog); dynein intermediate chain binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN positive regulation of erythrocyte enucleation (ortholog); protein autoubiquitination (ortholog); protein polyubiquitination (ortholog); ASSOCIATED WITH Cryopyrin-Associated Periodic Syndromes (ortholog); developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955613 229567 243019 + 102027367 AGCD01077204;AGCD01077205;GBBH01172756;GBBH01172759;XM_013510135;XM_013510136 XP_013365589;XP_013365590 MODEL 10224428 ncrna LOC106149828 uncharacterized LOC106149828 NW_004955454 5647780 5667006 - 106149828 AGCD01045179;AGCD01045180;GBDK01124518;XR_001236249 MODEL 8795692 protein-coding Slmap sarcolemma associated protein ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN negative regulation of hippo signaling (ortholog); protein localization to plasma membrane (ortholog); regulation of membrane depolarization during cardiac muscle cell action potential (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Brugada syndrome (ortholog); cardiac arrest (ortholog); FOUND IN cytoplasm (ortholog); FAR/SIN/STRIPAK complex (ortholog); membrane (ortholog) NW_004955430 7470823 7620101 + 102016939 AGCD01029353;AGCD01029354;AGCD01029355;AGCD01029356;AGCD01029357;AGCD01029358;GBBH01007453;GBDF01076825;XM_005387415 XP_005387472 MODEL 8760333 protein-coding Pkm pyruvate kinase M1/2 ENCODES a protein that exhibits ADP binding (ortholog); histone H3T11 kinase activity (ortholog); identical protein binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); canonical glycolysis (ortholog); glucose metabolic process (ortholog); PARTICIPATES IN glycolysis pathway; hypoxia inducible factor pathway; pyruvate metabolic pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); Bloom syndrome (ortholog); carcinoma (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955450 4907962 4935179 + 102004440 AGCD01042486;GBCQ01008781;XM_005393620;XM_005393621;XM_005393622;XM_005393623 XP_005393677;XP_005393678;XP_005393679;XP_005393680 MODEL 9045523 protein-coding Psen2 presenilin 2 ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); endopeptidase activity (ortholog); INVOLVED IN amyloid precursor protein catabolic process (ortholog); amyloid-beta formation (ortholog); amyloid-beta metabolic process (ortholog); PARTICIPATES IN altered Notch signaling pathway involving the macromolecules modifying the main players; Alzheimer's disease pathway; Notch signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Alzheimer's disease 4 (ortholog); asphyxia neonatorum (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cytosol (ortholog) NW_004955406 5727367 5748798 + 102025650 AGCD01005739;GBCB01041147;GBCE01074852;XM_005374755 XP_005374812 MODEL 8934636 protein-coding Phyh phytanoyl-CoA 2-hydroxylase ENCODES a protein that exhibits carboxylic acid binding (ortholog); catalytic activity (ortholog); ferrous iron binding (ortholog); INVOLVED IN 2-oxobutyrate catabolic process (ortholog); 2-oxoglutarate metabolic process (ortholog); fatty acid alpha-oxidation (ortholog); PARTICIPATES IN phytanic acid degradation pathway; Refsum disease pathway; ASSOCIATED WITH Adult Refsum Disease, 1 (ortholog); Familial Hypophosphatemic Rickets (ortholog); fundus dystrophy (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); peroxisome (ortholog) NW_004955462 1238622 1250731 - 102011630 AGCD01049103;GBCB01113496;GBDJ01135425;XM_005398098 XP_005398155 MODEL 8705053 protein-coding Prlh prolactin releasing hormone ENCODES a protein that exhibits neuropeptide hormone activity (ortholog); prolactin-releasing peptide receptor binding (ortholog); INVOLVED IN autonomic nervous system development (ortholog); eating behavior (ortholog); energy reserve metabolic process (ortholog); PARTICIPATES IN obesity pathway; ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955542 2765578 2768057 - 102008030 AGCD01071537;GBDK01287743;XM_005411227 XP_005411284 MODEL 8704975 protein-coding Raph1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 INVOLVED IN axon extension (ortholog); ASSOCIATED WITH autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); common variable immunodeficiency 1 (ortholog); FOUND IN cell leading edge (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955457 11394572 11462617 + 102030500 AGCD01046968;AGCD01046969;AGCD01046970;GBDF01154438;XM_013520695;XM_013520696;XM_013520697;XM_013520698;XM_013520699;XM_013520700 XP_013376149;XP_013376150;XP_013376151;XP_013376152;XP_013376153;XP_013376154 MODEL 8945233 protein-coding Slc25a25 solute carrier family 25 member 25 ENCODES a protein that exhibits ATP:phosphate antiporter activity (ortholog); INVOLVED IN adipose tissue development (ortholog); ATP metabolic process (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); congenital disorder of glycosylation Iu (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN mitochondrion (ortholog) NW_004955419 621445 656172 - 102018095 AGCD01019598;AGCD01019599;AGCD01019600;AGCD01019601;GBDF01304569;XM_005382383;XM_005382385;XM_005382387 XP_005382440;XP_005382442;XP_005382444 MODEL 9048711 protein-coding Otop3 otopetrin 3 ENCODES a protein that exhibits proton channel activity (ortholog); INVOLVED IN proton transmembrane transport (ortholog); FOUND IN plasma membrane (ortholog) NW_004955553 1806313 1817515 + 102017394 AGCD01072900;GBDI01310917;XM_005412263 XP_005412320 MODEL 8891322 protein-coding Snx11 sorting nexin 11 ENCODES a protein that exhibits phosphatidylinositol phosphate binding (ortholog); INVOLVED IN vesicle organization (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); plasma membrane (ortholog) NW_004955451 13051649 13060479 - 102008910 AGCD01043444;GBCE01136669;XM_005394248;XM_013519425;XM_013519426;XM_013519427 XP_005394305;XP_013374879;XP_013374880;XP_013374881 MODEL 8702712 protein-coding Per2 period circadian regulator 2 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); histone deacetylase binding (ortholog); histone methyltransferase binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH advanced sleep phase syndrome (ortholog); advanced sleep phase syndrome 1 (ortholog); alcohol dependence (ortholog); FOUND IN Cry-Per complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955542 2331547 2369011 + 102025287 AGCD01071518;AGCD01071519;GBBH01061747;GBDI01080968;XM_005411189 XP_005411246 MODEL 10334394 protein-coding LOC106147002 uncharacterized LOC106147002 NW_004955511 5846173 5865432 + 106147002 AGCD01066587;AGCD01066588;AGCD01066589;AGCD01066590;GBDJ01148743;XM_013506433 XP_013361887 MODEL 8917623 protein-coding Trpc4 transient receptor potential cation channel subfamily C member 4 ENCODES a protein that exhibits beta-catenin binding (ortholog); cadherin binding (ortholog); calcium channel activity (ortholog); INVOLVED IN calcium ion import (ortholog); calcium ion transport (ortholog); gamma-aminobutyric acid secretion (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); lung cancer (ortholog); prostate cancer (ortholog); FOUND IN basolateral plasma membrane (ortholog); calcium channel complex (ortholog); caveola (ortholog) NW_004955431 8283585 8479524 + 102020596 AGCD01030124;AGCD01030125;AGCD01030126;GBDJ01262104;XM_005387650;XM_005387651;XM_013515720 XP_005387707;XP_005387708;XP_013371174 MODEL 8887471 protein-coding Pcsk9 proprotein convertase subtilisin/kexin type 9 ENCODES a protein that exhibits apolipoprotein binding (ortholog); apolipoprotein receptor binding (ortholog); low-density lipoprotein particle binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); cellular response to starvation (ortholog); cholesterol homeostasis (ortholog); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); classic citrullinemia (ortholog); coronary artery disease (ortholog); FOUND IN cell surface (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); cytoplasm (ortholog) NW_004955464 4424583 4439805 - 102023126 AGCD01049990;AGCD01049991;GBDJ01046754;XM_005398505 XP_005398562 MODEL 8773557 protein-coding Tp53rk TP53 regulating kinase ENCODES a protein that exhibits p53 binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN protein phosphorylation (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); Developmental Disabilities (ortholog); focal epilepsy (ortholog); FOUND IN cytoplasm (ortholog); EKC/KEOPS complex (ortholog); nucleus (ortholog) NW_004955445 10734723 10737445 + 102016858 AGCD01039678;GBDI01218514;XM_005392371 XP_005392428 MODEL 8885857 protein-coding LOC102017453 neutrophil gelatinase-associated lipocalin-like NW_004955419 593659 597689 - 102017453 AGCD01019598;GBCE01033254;XM_005382380 XP_005382437 MODEL 8955044 protein-coding Bricd5 BRICHOS domain containing 5 ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); developmental and epileptic encephalopathy 1 (ortholog); endometrial carcinoma (ortholog) NW_004955442 15054116 15056506 + 102028586 AGCD01037856;GBDF01024331;XM_005391445;XM_005391446;XM_013517734;XM_013517735 XP_005391502;XP_005391503;XP_013373188;XP_013373189 MODEL 8975785 protein-coding Lgi2 leucine rich repeat LGI family member 2 INVOLVED IN inhibitory synapse assembly (ortholog); ASSOCIATED WITH epilepsy (ortholog) NW_004955480 58661 89906 + 102025461 AGCD01056578;AGCD01056579;GBBH01193047;GBBH01193048;XM_005402459 XP_005402516 MODEL 8836724 pseudo LOC102006453 small ubiquitin-related modifier 2-like NW_004955476 1102626 1103054 - 102006453 AGCD01055200 MODEL 8994314 pseudo LOC102018615 BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 pseudogene NW_004955423 116522 118457 + 102018615 AGCD01023410 MODEL 8757427 ncrna LOC102012577 uncharacterized LOC102012577 NW_004955437 7996387 8008061 - 102012577 AGCD01034476;GBDF01158367;XR_261866 MODEL 8708380 pseudo LOC102010232 suppressor of cytokine signaling 5-like NW_004955458 3896343 3898873 + 102010232 AGCD01047353 MODEL 8959254 protein-coding Slc39a6 solute carrier family 39 member 6 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN epithelial to mesenchymal transition (ortholog); intracellular zinc ion homeostasis (ortholog); lymphocyte activation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); chromosome 18q deletion syndrome (ortholog); esophagus squamous cell carcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); endoplasmic reticulum (ortholog); lamellipodium membrane (ortholog) NW_004955402 22670598 22698455 - 102008795 AGCD01000608;GBDF01192816;XM_005372806 XP_005372863 MODEL 8821435 protein-coding Ptpn3 protein tyrosine phosphatase non-receptor type 3 ENCODES a protein that exhibits ATPase binding (ortholog); phosphotyrosine residue binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN liver regeneration (ortholog); negative regulation of membrane protein ectodomain proteolysis (ortholog); negative regulation of mitotic cell cycle (ortholog); ASSOCIATED WITH diastolic heart failure (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955419 17560664 17645420 + 102018833 AGCD01020159;GBBH01026019;GBCQ01067663;XM_013513248 XP_013368702 MODEL 8975644 pseudo LOC102021534 protein archease pseudogene NW_004955463 5982003 5982507 - 102021534 AGCD01049652 MODEL 9019484 protein-coding Sqor sulfide quinone oxidoreductase ENCODES a protein that exhibits glutathione-dependent sulfide quinone oxidoreductase activity (ortholog); sulfide:quinone oxidoreductase activity (ortholog); INVOLVED IN sulfide oxidation, using sulfide:quinone oxidoreductase (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); COVID-19 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955409 7831698 7857249 - 102017960 AGCD01009367;GBCB01056193;XM_005376724 XP_005376781 MODEL 9017316 ncrna LOC102024251 uncharacterized LOC102024251 NW_004955423 17070325 17072112 - 102024251 AGCD01023845;GBDF01112738;XR_001234037;XR_260979 MODEL 8805897 protein-coding Wdfy1 WD repeat and FYVE domain containing 1 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); INVOLVED IN positive regulation of toll-like receptor 3 signaling pathway (ortholog); positive regulation of toll-like receptor 4 signaling pathway (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cell junction (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955453 10101576 10148205 + 102020198 AGCD01044782;GBDF01044991;XM_005395485 XP_005395542 MODEL 8808126 pseudo LOC102010986 tubulin polyglutamylase complex subunit 2 pseudogene NW_004955468 4276509 4282049 + 102010986 AGCD01051904 MODEL 8714502 ncrna LOC102005387 uncharacterized LOC102005387 NW_004955493 5235633 5241231 + 102005387 AGCD01061061;GBDF01080114;XR_001231263 MODEL 8989492 protein-coding Ncaph non-SMC condensin I complex subunit H ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN female meiosis chromosome separation (ortholog); female meiotic nuclear division (ortholog); meiotic chromosome condensation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); fundus dystrophy (ortholog); hepatocellular carcinoma (ortholog); FOUND IN chromosome (ortholog); condensed nuclear chromosome (ortholog); condensin complex (ortholog) NW_004955470 3878896 3909087 + 102017443 AGCD01052712;GBDF01047936;XM_005400660;XM_005400661;XM_005400663 XP_005400717;XP_005400718;XP_005400720 MODEL 8896472 protein-coding LOC102011379 histone H2B type 1-B-like NW_004955581 88920 89732 + 102011379 AGCD01075657;XM_005414228 XP_005414285 MODEL 8724134 protein-coding Paqr3 progestin and adipoQ receptor family member 3 ENCODES a protein that exhibits protein-membrane adaptor activity (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN negative regulation of MAP kinase activity (ortholog); negative regulation of neuron projection development (ortholog); negative regulation of peptidyl-serine phosphorylation (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955433 3323426 3350358 - 102022216 AGCD01031420;GBCB01073899;XM_005388211;XM_005388212;XM_005388213;XM_013516174;XR_261551 XP_005388268;XP_005388269;XP_005388270;XP_013371628 MODEL 8759743 pseudo LOC102009446 heat shock cognate 71 kDa protein pseudogene NW_004955402 47210640 47213865 + 102009446 AGCD01001177;XR_259129 MODEL 8787836 protein-coding LOC102011800 arrestin domain-containing protein 2 NW_004955524 3316609 3321314 - 102011800 AGCD01068880;AGCD01068881;GBCB01002759;GBDI01131111;XM_013507270 XP_013362724 MODEL 8754400 ncrna LOC102023254 uncharacterized LOC102023254 NW_004955470 9123134 9132267 - 102023254 AGCD01052835;GBDF01224252;XR_263478 MODEL 8917388 pseudo LOC102006459 protein lin-7 homolog A-like NW_004955418 22883973 22884992 - 102006459 AGCD01019293 MODEL 8744440 pseudo LOC102018617 phylloquinone omega-hydroxylase CYP4F2-like NW_004955495 7595180 7606574 - 102018617 AGCD01062154 MODEL 8736082 protein-coding Rcl1 RNA terminal phosphate cyclase like 1 INVOLVED IN endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH Animal Disease Models (ortholog); chromosome 9p deletion syndrome (ortholog); lung adenocarcinoma (ortholog); FOUND IN nucleolus (ortholog); small-subunit processome (ortholog) NW_004955434 9073643 9137387 + 102028569 AGCD01032288;AGCD01032289;AGCD01032290;AGCD01032291;GBBH01052005;XM_005388652 XP_005388709 MODEL 8917071 protein-coding Psenen presenilin enhancer, gamma-secretase subunit ENCODES a protein that exhibits endopeptidase activator activity (ortholog); enzyme binding (ortholog); INVOLVED IN amyloid precursor protein catabolic process (ortholog); amyloid precursor protein metabolic process (ortholog); amyloid-beta formation (ortholog); PARTICIPATES IN Notch signaling pathway; syndecan signaling pathway; ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); Familial Acne Inversa 2 (ortholog); FOUND IN endoplasmic reticulum (ortholog); gamma-secretase complex (ortholog); Golgi apparatus (ortholog) NW_004955468 2805153 2806573 - 102023891 AGCD01051838;GBCE01000146;XM_005399975;XM_013522407 XP_005400032;XP_013377861 MODEL 8928418 protein-coding LOC102003664 apoptosis-associated speck-like protein containing a CARD NW_004955493 8053687 8055442 - 102003664 AGCD01061257;GBDF01238687;XM_005405309 XP_005405366 MODEL 8773064 protein-coding Phyhd1 phytanoyl-CoA dioxygenase domain containing 1 ENCODES a protein that exhibits 2-oxoglutarate-dependent dioxygenase activity (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955570 1298243 1308230 + 102012377 AGCD01074807;AGCD01074808;GBCB01020010;XM_013509414;XM_013509415 XP_013364868;XP_013364869 MODEL 8716381 protein-coding Emc8 ER membrane protein complex subunit 8 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); ASSOCIATED WITH persistent fetal circulation syndrome (ortholog); FOUND IN cytoplasm (ortholog); EMC complex (ortholog); endoplasmic reticulum (ortholog) NW_004955541 873354 884247 - 102020052 AGCD01071363;GBDI01066673;GBDJ01075485;XM_005410981;XM_013507992 XP_005411038;XP_013363446 MODEL 8929704 protein-coding Rhbdf2 rhomboid 5 homolog 2 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); INVOLVED IN negative regulation of protein secretion (ortholog); protein localization to plasma membrane (ortholog); regulation of metalloendopeptidase activity (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatoblastoma (ortholog); palmoplantar keratoderma-esophageal carcinoma syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955506 5805415 5828286 + 102023826 AGCD01065390;GBDK01396584;XM_005407428 XP_005407485 MODEL 8870073 protein-coding Slc39a7 solute carrier family 39 member 7 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN B cell differentiation (ortholog); intracellular zinc ion homeostasis (ortholog); regulation of ferroptosis (ortholog); ASSOCIATED WITH agammaglobulinemia 9 (ortholog); autosomal dominant intellectual developmental disorder 5 (ortholog); MHC class I deficiency (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); nucleoplasm (ortholog) NW_004955437 1774301 1778092 + 102027785 AGCD01034233;GBDF01119218;XM_005389473;XM_013516972 XP_005389530;XP_013372426 MODEL 8982294 pseudo LOC102006824 sorting nexin-2 pseudogene NW_004955439 2480520 2482408 - 102006824 AGCD01035651 MODEL 8732125 protein-coding Otor otoraplin INVOLVED IN cartilage condensation (ortholog); ASSOCIATED WITH familial hyperinsulinemic hypoglycemia 1 (ortholog) NW_004955415 25897320 25901059 + 102008311 AGCD01016587;GBCC01001217;XM_005380903 XP_005380960 MODEL 39133316 snrna U4 U4 spliceosomal RNA 8968791 protein-coding Emc9 ER membrane protein complex subunit 9 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Specific Granule Deficiency (ortholog); FOUND IN cytoplasm (ortholog); EMC complex (ortholog) NW_004955409 36257904 36262120 + 102009357 AGCD01010454;GBDK01277777;XM_005377037 XP_005377094 MODEL 8728107 protein-coding Tp53tg5 TP53 target 5 ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog) NW_004955445 11958649 11962623 + 102007163 AGCD01039730;GBDF01044016;XM_005392432;XM_005392433 XP_005392489;XP_005392490 MODEL 8789974 protein-coding Trpc4ap transient receptor potential cation channel subfamily C member 4 associated protein ENCODES a protein that exhibits phosphatase binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN hair follicle maturation (ortholog); protein ubiquitination (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); long QT syndrome (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (ortholog); Cul4A-RING E3 ubiquitin ligase complex (ortholog); cytosol (ortholog) NW_004955422 26301937 26383464 + 102016719 AGCD01023284;AGCD01023285;AGCD01023286;AGCD01023287;AGCD01023288;GBDF01005507;XM_005384808;XM_005384809 XP_005384865;XP_005384866 MODEL 8943993 protein-coding Pcyox1 prenylcysteine oxidase 1 ENCODES a protein that exhibits FAD binding (ortholog); prenylcysteine oxidase activity (ortholog); INVOLVED IN chloride transmembrane transport (ortholog); prenylated protein catabolic process (ortholog); prenylcysteine catabolic process (ortholog); ASSOCIATED WITH Weight Gain (ortholog); FOUND IN lysosome (ortholog); very-low-density lipoprotein particle (ortholog) NW_004955424 14854755 14865920 - 102006478 AGCD01024660;AGCD01024661;GBDF01155378;XM_005385617 XP_005385674 MODEL 8831180 protein-coding Trim59 tripartite motif containing 59 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN host-mediated suppression of symbiont invasion (ortholog); innate immune response (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955448 10962181 10971948 - 102004658 AGCD01041507;GBCQ01126672;XM_005393122;XM_005393123;XM_013518598 XP_005393179;XP_005393180;XP_013374052 MODEL 8818216 protein-coding Plppr2 phospholipid phosphatase related 2 NW_004955495 2270323 2279688 + 102021683 AGCD01061760;GBBH01044136;XM_005405660;XM_005405661 XP_005405717;XP_005405718 MODEL 10205592 protein-coding LOC106149829 uncharacterized LOC106149829 NW_004955454 7292739 7313023 + 106149829 AGCD01045294;GBCE01163925;XM_013520221;XM_013520222;XM_013520223;XR_001236250;XR_001236251;XR_001236252 XP_013375675;XP_013375676;XP_013375677 MODEL 8872308 protein-coding LOC102018971 melanoma-associated antigen B1-like NW_004955531 753754 758259 + 102018971 AGCD01070008;AGCD01070009;GBCQ01164686;XM_005410134;XM_005410135 XP_005410191;XP_005410192 MODEL 8794498 protein-coding Brinp1 BMP/retinoic acid inducible neural specific 1 INVOLVED IN behavioral fear response (ortholog); brain development (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); autism spectrum disorder (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); synapse (ortholog) NW_004955419 8529213 8704113 + 102029398 AGCD01019899;AGCD01019900;GBBH01200609;XM_005382605 XP_005382662 MODEL 8991169 protein-coding Polr3b RNA polymerase III subunit B ENCODES a protein that exhibits DNA-directed RNA polymerase activity (ortholog); DNA/RNA hybrid binding (ortholog); zinc ion binding (ortholog); INVOLVED IN positive regulation of innate immune response (ortholog); positive regulation of interferon-beta production (ortholog); snRNA transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH amenorrhea (ortholog); Charcot-Marie-Tooth Disease Type 1I (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); RNA polymerase III complex (ortholog) NW_004955405 40353289 40451445 + 102021939 AGCD01005515;AGCD01005516;AGCD01005517;GBDF01078628;XM_005374620;XM_013519054 XP_005374677;XP_013374508 MODEL 8997275 protein-coding Paqr4 progestin and adipoQ receptor family member 4 ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN protein stabilization (ortholog); regulation of ceramide biosynthetic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955442 14373092 14375862 - 102010313 AGCD01037815;GBCE01008164;XM_005391386 XP_005391443 MODEL 8858406 protein-coding Septin8 septin 8 ENCODES a protein that exhibits SNARE binding (ortholog); INVOLVED IN regulation of intracellular protein transport (ortholog); regulation of protein stability (ortholog); regulation of SNARE complex assembly (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN myelin sheath (ortholog); presynapse (ortholog); septin complex (ortholog) NW_004955408 4129302 4143683 - 102003838 AGCD01008089;GBCE01094947;GBDK01003639;XM_005376114 XP_005376171 MODEL 9036102 protein-coding Rab29 RAB29, member RAS oncogene family ENCODES a protein that exhibits dynein complex binding (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN cellular detoxification (ortholog); cilium assembly (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cis-Golgi network (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955406 41452733 41468467 - 102012400 AGCD01006684;GBDI01312292;XM_005375371;XM_005375372;XM_005375373;XM_013522973;XM_013522978;XM_013522980;XM_013522983;XM_013522990 XP_005375428;XP_005375429;XP_005375430;XP_013378427;XP_013378432;XP_013378434;XP_013378437;XP_013378444 MODEL 8945916 protein-coding Rapsn receptor associated protein of the synapse ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); ionotropic glutamate receptor binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN establishment of protein localization to postsynaptic membrane (ortholog); motor neuron apoptotic process (ortholog); neuromuscular junction development (ortholog); PARTICIPATES IN acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH autoimmune disease (ortholog); congenital disorder of glycosylation type IIc (ortholog); congenital myasthenic syndrome (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955422 826556 834483 + 102021454 AGCD01022437;GBDI01027570;XM_005383970 XP_005384027 MODEL 8803409 protein-coding Prlhr prolactin releasing hormone receptor ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); peptide hormone binding (ortholog); INVOLVED IN feeding behavior (ortholog); G protein-coupled receptor signaling pathway (ortholog); hormone metabolic process (ortholog); PARTICIPATES IN obesity pathway; ASSOCIATED WITH hypertension (ortholog); obesity (ortholog); FOUND IN cilium (ortholog) NW_004955431 23192018 23193130 - 102004506 AGCD01030532;XM_005387879 XP_005387936 MODEL 8705148 pseudo LOC102015547 26S proteasome non-ATPase regulatory subunit 10-like NW_004955503 7733146 7733943 - 102015547 AGCD01064799 MODEL 10106586 ncrna LOC106147003 uncharacterized LOC106147003 NW_004955407 2924370 2960558 - 106147003 AGCD01006844;AGCD01006845;GBDF01064437;XR_001231699 MODEL 8767594 protein-coding Sqstm1 sequestosome 1 ENCODES a protein that exhibits enzyme binding (ortholog); identical protein binding (ortholog); ionotropic glutamate receptor binding (ortholog); INVOLVED IN aggrephagy (ortholog); autophagy (ortholog); brown fat cell proliferation (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; mitochondrial autophagy pathway; nuclear factor, erythroid 2 like 2 signaling pathway; ASSOCIATED WITH acute myocardial infarction (ortholog); alcoholic hepatitis (ortholog); Alcoholic Liver Diseases (ortholog); FOUND IN aggresome (ortholog); amphisome (ortholog); autolysosome (ortholog) NW_004955408 757426 764989 - 102030388 AGCD01007929;GBBH01004456;GBDF01051499;XM_013507872 XP_013363326 MODEL 8804791 protein-coding Per3 period circadian regulator 3 ENCODES a protein that exhibits kinase binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN circadian rhythm (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); protein stabilization (ortholog); ASSOCIATED WITH advanced sleep phase syndrome (ortholog); advanced sleep phase syndrome 1 (ortholog); advanced sleep phase syndrome 3 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955486 5058602 5101480 - 102004823 AGCD01059074;AGCD01059075;GBDI01066498;XM_005404069;XM_005404070;XM_013504262;XM_013504263;XM_013504264 XP_005404126;XP_005404127;XP_013359716;XP_013359717;XP_013359718 MODEL 8861575 pseudo LOC102012580 SPRY domain-containing protein 4 pseudogene NW_004955538 3531985 3536331 - 102012580 AGCD01071169 MODEL 8700706 protein-coding Otos otospiralin INVOLVED IN sensory perception of sound (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog) NW_004955542 1128036 1129445 + 102018649 AGCD01071489;GBCC01000940;XM_005411167 XP_005411224 MODEL 8732965 protein-coding Pkmyt1 protein kinase, membrane associated tyrosine/threonine 1 ENCODES a protein that exhibits kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN negative regulation of G2/M transition of mitotic cell cycle (ortholog); ASSOCIATED WITH COVID-19 (ortholog); developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); nucleolus (ortholog) NW_004955442 14368110 14372365 + 102009552 AGCD01037815;GBDF01004416;GBDJ01355796;XM_013517861 XP_013373315 MODEL 8745526 ncrna LOC102010234 uncharacterized LOC102010234 NW_004955463 10201295 10205872 - 102010234 AGCD01049806;GBDF01116012;XR_263170 MODEL 8766136 protein-coding Ncaph2 non-SMC condensin II complex subunit H2 INVOLVED IN female meiosis chromosome separation (ortholog); female meiotic nuclear division (ortholog); meiotic chromosome condensation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog); FOUND IN cell junction (ortholog); chromosome (ortholog); condensed chromosome (ortholog) NW_004955413 33492348 33503804 + 102003858 AGCD01014673;GBDF01052236;XM_005379577;XM_005379578;XM_005379579;XM_005379582;XM_013511508;XM_013511509 XP_005379634;XP_005379635;XP_005379636;XP_005379639;XP_013366962;XP_013366963 MODEL 8783453 pseudo LOC102006463 targeting protein for Xklp2 pseudogene NW_004955484 7904220 7935632 - 102006463 AGCD01058355;AGCD01058356;AGCD01058357;AGCD01058358;AGCD01058359 MODEL 8906125 protein-coding Rsbn1 round spermatid basic protein 1 ENCODES a protein that exhibits histone H4K20 demethylase activity (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 47 (ortholog); RASopathy (ortholog); FOUND IN nucleus (ortholog) NW_004955435 17028173 17081644 - 102029114 AGCD01033344;AGCD01033345;GBBH01201251;GBCQ01125658;XM_013516425;XM_013516427 XP_013371879;XP_013371881 MODEL 8954698 ncrna LOC102018618 uncharacterized LOC102018618 NW_004955496 6005138 6016243 + 102018618 AGCD01062360;GBDF01112432;XR_001231412;XR_001231413;XR_001231414;XR_001231415;XR_001231416;XR_001231417;XR_001231418;XR_001231419;XR_001231420;XR_001231421;XR_264181 MODEL 8937825 protein-coding LOC102024255 melanoma-associated antigen 8-like NW_004955498 3964985 3967659 - 102024255 AGCD01062955;GBDF01220827;XM_005406404 XP_005406461 MODEL 8864590 protein-coding LOC102023255 interleukin-36 beta-like NW_004955470 1290324 1294753 + 102023255 AGCD01052633;XM_005400824 XP_005400881 MODEL 8845882 protein-coding LOC102021537 heterogeneous nuclear ribonucleoprotein M-like NW_004955465 3678561 3680629 - 102021537 AGCD01050388;XM_013521806 XP_013377260 MODEL 8890717 protein-coding Paqr5 progestin and adipoQ receptor family member 5 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955450 7089521 7108981 - 102016333 AGCD01042532;GBDF01048968;XM_005393661;XM_005393662;XM_013519041 XP_005393718;XP_005393719;XP_013374495 MODEL 8824881 protein-coding Thumpd2 THUMP domain 2 tRNA and snRNA guanosine methyltransferase ENCODES a protein that exhibits U6 snRNA (guanine-N(2))-methyltransferase activity (ortholog); INVOLVED IN regulation of alternative mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Lynch syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleus (ortholog); tRNA methyltransferase complex (ortholog) NW_004955441 7329468 7369957 - 102016851 AGCD01036958;AGCD01036959;AGCD01036960;AGCD01036961;GBDJ01125332;XM_005390906;XM_005390907;XM_013517626;XM_013517627 XP_005390963;XP_005390964;XP_013373080;XP_013373081 MODEL 150537104 snorna SNORD12C small nucleolar RNA, C/D box 12C 8750271 protein-coding LOC102007948 leukocyte immunoglobulin-like receptor subfamily B member 3 NW_004955567 1160961 1183994 + 102007948 AGCD01074460;AGCD01074461;GBCE01168958;XM_005413368;XM_013509271;XM_013509272;XM_013509273;XM_013509274;XM_013509275;XM_013509276;XM_013509277;XM_013509278 XP_005413425;XP_013364725;XP_013364726;XP_013364727;XP_013364728;XP_013364729;XP_013364730;XP_013364731;XP_013364732 MODEL 8756219 ncrna LOC102010568 uncharacterized LOC102010568 NW_004955413 250256 256400 + 102010568 AGCD01013452;AGCD01013453;GBDF01303978;XR_260042 MODEL 8922613 pseudo LOC102017454 KATNB1-like protein 1 pseudogene NW_004955483 7603210 7604135 - 102017454 AGCD01057807 MODEL 8930645 ncrna LOC102015548 uncharacterized LOC102015548 NW_004955506 1094592 1095488 + 102015548 AGCD01065244;GBDF01181732;XR_264319 MODEL 8927681 protein-coding Slc39a8 solute carrier family 39 member 8 ENCODES a protein that exhibits monoatomic cation:bicarbonate symporter activity (ortholog); zinc:bicarbonate symporter activity (ortholog); INVOLVED IN arginine metabolic process (ortholog); bicarbonate transport (ortholog); cadmium ion transmembrane transport (ortholog); PARTICIPATES IN iron uptake pathway; ASSOCIATED WITH beta-mannosidosis (ortholog); congenital disorder of glycosylation type IIn (ortholog); Crohn's disease (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); lysosomal membrane (ortholog) NW_004955496 6016727 6106965 + 102019081 AGCD01062360;AGCD01062361;AGCD01062362;GBCQ01124663;GBDI01181151;XM_013505413;XM_013505414 XP_013360867;XP_013360868 MODEL 8998264 protein-coding Rhbdl1 rhomboid like 1 ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 16 (ortholog); cerebellar ataxia type 48 (ortholog); epilepsy (ortholog) NW_004955442 16525009 16528780 - 102021604 AGCD01037901;GBDF01194169;XM_005391625;XM_005391626;XM_005391627;XM_013517764;XM_013517765;XM_013517766 XP_005391682;XP_005391683;XP_005391684;XP_013373218;XP_013373219;XP_013373220 MODEL 9007799 protein-coding Rara retinoic acid receptor alpha ENCODES a protein that exhibits alpha-actinin binding (ortholog); chromatin binding (ortholog); chromatin DNA binding (ortholog); INVOLVED IN apoptotic cell clearance (ortholog); bone development (ortholog); cellular response to estrogen stimulus (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); amyotrophic lateral sclerosis (ortholog); Breast Neoplasms (ortholog); FOUND IN actin cytoskeleton (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955451 14876663 14917134 + 102012391 AGCD01043579;AGCD01043580;AGCD01043581;AGCD01043582;GBDF01083494;GBDK01083214;XM_005394357;XM_013519320;XM_013519321;XM_013519322 XP_005394414;XP_013374774;XP_013374775;XP_013374776 MODEL 8788996 protein-coding Sln sarcolipin INVOLVED IN negative regulation of ATPase-coupled calcium transmembrane transporter activity (ortholog); positive regulation of cold-induced thermogenesis (ortholog); regulation of ATPase-coupled calcium transmembrane transporter activity (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); sarcoplasmic reticulum (ortholog); sarcoplasmic reticulum membrane (ortholog) NW_004955412 10057481 10062178 - 102003220 AGCD01012756;GBDK01231463;XM_005378031;XM_005378032 XP_005378088;XP_005378089 MODEL 8871145 pseudo LOC102005391 olfactory receptor 9A4-like NW_004955494 1701718 1710311 - 102005391 AGCD01061420 MODEL 39133318 snrna U4 U4 spliceosomal RNA 8908392 pseudo LOC102011382 ubiquitin carboxyl-terminal hydrolase 1 pseudogene NW_004955402 52962185 52963700 + 102011382 AGCD01001352 MODEL 10270168 ncrna LOC106147004 uncharacterized LOC106147004 NW_004955511 5899074 5904168 - 106147004 AGCD01066591;GBBH01113046;XR_001231700 MODEL 8807388 protein-coding LOC102009447 vomeronasal type-1 receptor 4-like NW_004955603 356667 357605 - 102009447 AGCD01076839;XM_005414843 XP_005414900 MODEL 9026766 protein-coding Trpc5 transient receptor potential cation channel subfamily C member 5 ENCODES a protein that exhibits actin binding (ortholog); actinin binding (ortholog); ATPase binding (ortholog); INVOLVED IN negative regulation of dendrite morphogenesis (ortholog); neuron apoptotic process (ortholog); neuron differentiation (ortholog); ASSOCIATED WITH Albuminuria (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN calcium channel complex (ortholog); dendrite (ortholog); growth cone (ortholog) NW_004955490 3777756 4057275 + 102029978 AGCD01060174;AGCD01060175;AGCD01060176;AGCD01060177;AGCD01060178;AGCD01060179;AGCD01060180;XM_005404633;XM_013504508 XP_005404690;XP_013359962 MODEL 8988738 protein-coding Snn stannin ENCODES a protein that exhibits metal ion binding (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog) NW_004955442 6959325 6969268 - 102026264 AGCD01037608;GBCE01186579;XM_005391160 XP_005391217 MODEL 9033234 protein-coding Tp63 tumor protein p63 ENCODES a protein that exhibits chromatin binding (ortholog); damaged DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN anatomical structure formation involved in morphogenesis (ortholog); animal organ morphogenesis (ortholog); cellular senescence (ortholog); PARTICIPATES IN altered p53 signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); ADULT syndrome (ortholog); amenorrhea (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955420 18178639 18384786 - 102017241 AGCD01021040;AGCD01021041;AGCD01021042;AGCD01021043;AGCD01021044;GBDI01256795;XM_005383230;XM_005383231;XM_005383232;XM_005383233;XM_005383234;XM_005383235;XM_013513584 XP_005383287;XP_005383288;XP_005383289;XP_005383290;XP_005383291;XP_005383292;XP_013369038 MODEL 8974136 protein-coding Slc25a26 solute carrier family 25 member 26 ENCODES a protein that exhibits S-adenosyl-L-methionine transmembrane transporter activity (ortholog); S-adenosyl-L-methionine:S-adenosyl-L-homocysteine antiporter activity (ortholog); INVOLVED IN macromolecule methylation (ortholog); mitochondrial S-adenosyl-L-methionine transmembrane transport (ortholog); S-adenosyl-L-methionine transport (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 28 (ortholog); genetic disease (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955421 21220071 21334330 - 102016605 AGCD01022106;AGCD01022107;GBCQ01094953;XM_013513718;XM_013513719;XM_013513720;XM_013513721;XM_013513722;XM_013513723 XP_013369172;XP_013369173;XP_013369174;XP_013369175;XP_013369176;XP_013369177 MODEL 8834882 protein-coding Ptpn4 protein tyrosine phosphatase non-receptor type 4 ENCODES a protein that exhibits glutamate receptor binding (ortholog); non-membrane spanning protein tyrosine phosphatase activity (ortholog); INVOLVED IN peptidyl-tyrosine phosphorylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); membrane (ortholog) NW_004955459 9803421 9981392 - 102020217 AGCD01048171;AGCD01048172;AGCD01048173;AGCD01048174;AGCD01048175;AGCD01048176;AGCD01048177;GBDI01108232;XM_005397664;XM_013521057;XM_013521058;XM_013521059 XP_005397721;XP_013376511;XP_013376512;XP_013376513 MODEL 8892272 protein-coding Brinp2 BMP/retinoic acid inducible neural specific 2 INVOLVED IN cellular response to retinoic acid (ortholog); central nervous system neuron differentiation (ortholog); locomotion (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); gastrointestinal stromal tumor (ortholog); oral squamous cell carcinoma (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog) NW_004955406 16748824 16840924 + 102018683 AGCD01006000;GBDJ01100677;XM_005374909 XP_005374966 MODEL 9043330 protein-coding Plppr3 phospholipid phosphatase related 3 ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog) NW_004955495 6980213 6990331 + 102020352 AGCD01062108;AGCD01062109;GBDI01386422;XM_013505337 XP_013360791 MODEL 8726040 ncrna LOC102008328 uncharacterized LOC102008328 NW_004955423 11498337 11509824 - 102008328 AGCD01023701;GBDF01306799;XR_260965;XR_260966 MODEL 8919161 protein-coding Polr3c RNA polymerase III subunit C ENCODES a protein that exhibits single-stranded DNA binding (ortholog); INVOLVED IN positive regulation of innate immune response (ortholog); positive regulation of interferon-beta production (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH cataract 46 juvenile-onset (ortholog); gastrointestinal stromal tumor (ortholog); neutropenia (ortholog); FOUND IN nucleoplasm (ortholog); RNA polymerase III complex (ortholog) NW_004955568 242834 263053 - 102021492 AGCD01074506;AGCD01074507;AGCD01074508;AGCD01074509;GBCB01109428;GBDJ01127774;XM_013509335 XP_013364789 MODEL 8988956 ncrna LOC102003665 uncharacterized LOC102003665 NW_004955422 25513884 25522156 + 102003665 AGCD01023251;GBDF01153136;XR_260914 MODEL 9059698 protein-coding Snx12 sorting nexin 12 ENCODES a protein that exhibits enzyme binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN negative regulation of early endosome to late endosome transport (ortholog); negative regulation of gene expression (ortholog); negative regulation of protein catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN early endosome (ortholog) NW_004955475 10632938 10641452 - 102027521 AGCD01055105;GBCE01118453;XM_005401637 XP_005401694 MODEL 8780559 protein-coding Rab2a RAB2A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN autophagosome-lysosome fusion (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); Golgi organization (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH CHARGE syndrome (ortholog); polycystic ovary syndrome (ortholog); FOUND IN autophagosome membrane (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955444 18091640 18169971 - 102030675 AGCD01039229;GBCE01032380;XM_005392185 XP_005392242 MODEL 8713878 ncrna LOC102006829 uncharacterized LOC102006829 NW_004955554 382953 396502 + 102006829 AGCD01072948;GBDF01112731;XR_264945 MODEL 10200341 pseudo LOC102010988 Ig heavy chain V-I region 5-like NW_004955470 403274 403787 - 102010988 AGCD01052609 MODEL 8748236 pseudo LOC102011808 THO complex subunit 5 homolog pseudogene NW_004955540 390461 391906 + 102011808 AGCD01071274 MODEL 10162649 ncrna LOC106149830 uncharacterized LOC106149830 NW_004955454 2676378 2683365 - 106149830 AGCD01045028;GBDF01021645;XR_001236255 MODEL 8956716 ncrna LOC102017456 uncharacterized LOC102017456 NW_004955485 1028701 1070484 - 102017456 AGCD01058470;GBDF01021772;XR_001231092;XR_263903 MODEL 8845562 protein-coding Trim6 tripartite motif containing 6 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); identical protein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to interferon-beta (ortholog); cellular response to virus (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955414 21495593 21513703 + 102008616 AGCD01015422;GBDF01054312;XM_005380095;XM_013511994;XM_013511995;XM_013511997;XM_013511998;XM_013511999 XP_005380152;XP_013367448;XP_013367449;XP_013367451;XP_013367452;XP_013367453 MODEL 8734292 ncrna LOC102011385 uncharacterized LOC102011385 NW_004955403 10477798 10481600 + 102011385 AGCD01001922;GBDF01013779;XR_259170 MODEL 8903703 protein-coding Slc39a9 solute carrier family 39 member 9 ENCODES a protein that exhibits androgen binding (ortholog); G protein-coupled receptor activity (ortholog); zinc efflux transmembrane transporter activity (ortholog); INVOLVED IN bicellular tight junction assembly (ortholog); intracellular zinc ion homeostasis (ortholog); regulation of cellular response to testosterone stimulus (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955466 901813 960153 - 102028515 AGCD01050682;AGCD01050683;AGCD01050684;AGCD01050685;GBCQ01067034;XM_005399036;XM_013521986;XM_013521987 XP_005399093;XP_013377440;XP_013377441 MODEL 8724884 ncrna LOC102018973 uncharacterized LOC102018973 NW_004955533 929825 934774 + 102018973 AGCD01070335;GBDI01248267;XR_001232039;XR_001232040;XR_001232041 MODEL 8796731 protein-coding Rcn1 reticulocalbin 1 INVOLVED IN camera-type eye development (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); aniridia 1 (ortholog); carcinoma (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955476 10280669 10289668 + 102009714 AGCD01055419;GBCQ01007481;GBDK01131007;XM_005401900 XP_005401957 MODEL 150537113 snorna SNORA13 small nucleolar RNA, H/ACA box 13 8724324 protein-coding Ptpn5 protein tyrosine phosphatase non-receptor type 5 ENCODES a protein that exhibits identical protein binding (ortholog); phosphotyrosine residue binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN exploration behavior (ortholog); negative regulation of MAP kinase activity (ortholog); peptidyl-tyrosine dephosphorylation (ortholog); PARTICIPATES IN dopamine signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Brain Hypoxia-Ischemia (ortholog); hypertrophic cardiomyopathy 12 (ortholog); FOUND IN axon (ortholog); neuronal cell body (ortholog); perikaryon (ortholog) NW_004955414 33381783 33436974 - 102025349 AGCD01015805;AGCD01015806;GBDF01076364;XM_005380426;XM_013512076 XP_005380483;XP_013367530 MODEL 8923870 protein-coding Prlr prolactin receptor ENCODES a protein that exhibits lipid binding (ortholog); peptide hormone binding (ortholog); prolactin receptor activity (ortholog); INVOLVED IN activation of Janus kinase activity (ortholog); activation of transmembrane receptor protein tyrosine kinase activity (ortholog); cell surface receptor signaling pathway via JAK-STAT (ortholog); ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); Animal Mammary Neoplasms (ortholog); autistic disorder (ortholog); FOUND IN cell surface (ortholog) NW_004955426 20161406 20326688 - 102007036 AGCD01026564;AGCD01026565;AGCD01026566;GBDI01208671;XM_005386193;XM_005386194;XM_005386195;XM_013515018 XP_005386250;XP_005386251;XP_005386252;XP_013370472 MODEL 8735699 pseudo LOC102008330 guanine nucleotide-binding protein G(k) subunit alpha pseudogene NW_004955497 3650046 3651027 - 102008330 AGCD01062552 MODEL 8917654 ncrna LOC102021541 uncharacterized LOC102021541 NW_004955412 24094867 24096661 + 102021541 AGCD01013110;GBDF01192647;XR_260020 MODEL 8938401 protein-coding Emcn endomucin ENCODES a protein that exhibits carbohydrate binding (ortholog); INVOLVED IN angiogenesis (ortholog); cell-cell adhesion (ortholog); hematopoietic stem cell homeostasis (ortholog); ASSOCIATED WITH thyroid gland carcinoma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955496 7413228 7498983 + 102020583 AGCD01062379;GBCQ01007628;XM_005406259;XM_005406260 XP_005406316;XP_005406317 MODEL 9009390 protein-coding Polr3d RNA polymerase III subunit D ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN positive regulation of innate immune response (ortholog); positive regulation of interferon-beta production (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); RNA polymerase III complex (ortholog) NW_004955403 45721266 45727214 + 102005657 AGCD01002826;GBDK01187148;XM_005373655 XP_005373712 MODEL 8988210 protein-coding Percc1 proline and glutamate rich with coiled coil 1 INVOLVED IN digestive tract morphogenesis (ortholog); enteroendocrine cell differentiation (ortholog); ASSOCIATED WITH Diarrhea 11 (ortholog) NW_004955442 15800513 15803478 - 102006618 AGCD01037878;GBDK01358496;XM_005391573;XM_013517682 XP_005391630;XP_013373136 MODEL 8749442 protein-coding Thumpd3 THUMP domain 3 tRNA guanosine methyltransferase ENCODES a protein that exhibits tRNA (guanine(6)-N2)-methyltransferase activity (ortholog); tRNA (guanine(7)-N2)-methyltransferase activity (ortholog); INVOLVED IN tRNA methylation (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); Atrioventricular Septal Defect 2 (ortholog); long QT syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955561 933168 956457 + 102028693 AGCD01073827;GBDI01041484;XM_005413004;XM_005413005 XP_005413061;XP_005413062 MODEL 8775130 protein-coding LOC102012581 uncharacterized LOC102012581 NW_004955437 3361650 3366877 + 102012581 AGCD01034309;GBDF01223138;XM_013516728 XP_013372182 MODEL 8770265 pseudo LOC102005392 G patch domain-containing protein 11-like NW_004955422 28803634 28805092 + 102005392 AGCD01023370 MODEL 39133319 snrna U4 U4 spliceosomal RNA 8930779 protein-coding Snx13 sorting nexin 13 ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN intracellular protein transport (ortholog); positive regulation of GTPase activity (ortholog); PARTICIPATES IN epinephrine signaling pathway via adrenergic receptor beta; G protein mediated signaling pathway via Galphas family; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN early endosome (ortholog) NW_004955410 20792659 20925907 - 102024195 AGCD01011052;AGCD01011053;AGCD01011054;GBCE01070030;XM_005377341;XM_005377342 XP_005377398;XP_005377399 MODEL 8809088 pseudo LOC102009451 archaemetzincin-2-like NW_004955403 30870358 30871472 + 102009451 AGCD01002408 MODEL 8773963 protein-coding LOC102010989 putative olfactory receptor 52P1 NW_004955414 21657267 21659390 + 102010989 AGCD01015425;GBDJ01377827;XM_005380103 XP_005380160 MODEL 8706603 protein-coding Pkn1 protein kinase N1 ENCODES a protein that exhibits chromatin binding (ortholog); diacylglycerol-dependent serine/threonine kinase activity (ortholog); histone binding (ortholog); INVOLVED IN B cell apoptotic process (ortholog); B cell homeostasis (ortholog); epithelial cell migration (ortholog); ASSOCIATED WITH Neointima (ortholog); FOUND IN cleavage furrow (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955415 33040868 33062753 + 102014448 AGCD01016747;AGCD01016748;GBDK01001917;XM_005381094;XM_005381095;XM_005381096;XM_005381097;XM_005381098;XM_013512169 XP_005381151;XP_005381152;XP_005381153;XP_005381154;XP_005381155;XP_013367623 MODEL 8776073 protein-coding Trpc5os TRPC5 opposite strand ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955490 3952565 3981690 - 102029636 AGCD01060178;AGCD01060179;GBDF01209797;XM_005404632;XM_013504509 XP_005404689;XP_013359963 MODEL 8994372 ncrna LOC102018978 uncharacterized LOC102018978 NW_004955538 50810 55747 + 102018978 AGCD01070984;GBDF01116779;XR_264782 MODEL 8743770 pseudo LOC102023261 dnaJ homolog subfamily B member 2-like NW_004955479 9427904 9428831 + 102023261 AGCD01056467 MODEL 8748158 protein-coding Slc25a27 solute carrier family 25 member 27 ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); protein homodimerization activity (ortholog); proton transmembrane transporter activity (ortholog); INVOLVED IN inner ear development (ortholog); intracellular triglyceride homeostasis (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH schizophrenia (ortholog); Spinal Cord Injuries (ortholog); FOUND IN apical part of cell (ortholog); mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog) NW_004955437 11497308 11514208 + 102007055 AGCD01034574;GBDF01042740;XM_005389860;XM_005389862 XP_005389917;XP_005389919 MODEL 8825216 protein-coding Wdfy2 WD repeat and FYVE domain containing 2 INVOLVED IN positive regulation of fat cell differentiation (ortholog); positive regulation of protein phosphorylation (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); Wilson disease (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955431 4809405 5086647 + 102030224 AGCD01030011;AGCD01030012;AGCD01030013;AGCD01030014;GBDF01161721;XM_005387605;XM_005387606;XM_005387607;XM_013515761;XM_013515762;XM_013515763;XR_261449 XP_005387662;XP_005387663;XP_005387664;XP_013371215;XP_013371216;XP_013371217 MODEL 8708063 protein-coding Paqr6 progestin and adipoQ receptor family member 6 ASSOCIATED WITH calcium oxalate nephrolithiasis (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955545 2382214 2386406 - 102023397 AGCD01071898;GBDJ01188717;XM_005411662;XM_013508270;XM_013508271;XM_013508272;XM_013508273 XP_005411719;XP_013363724;XP_013363725;XP_013363726;XP_013363727 MODEL 39132570 snorna SNORD14 Small nucleolar RNA SNORD14 8710213 protein-coding Pcyox1l prenylcysteine oxidase 1 like INVOLVED IN neutrophil-mediated killing of bacterium (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955415 5052782 5059939 - 102026102 AGCD01015989;GBBH01177322;GBDF01075424;XM_005380613 XP_005380670 MODEL 8957773 protein-coding Prm3 protamine 3 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 1C (ortholog); Landau-Kleffner syndrome (ortholog); MHC class II deficiency (ortholog); FOUND IN cytoplasm (ortholog) NW_004955442 7308621 7309105 + 102030572 AGCD01037623;GBDF01008604;XM_005391167 XP_005391224 MODEL 8819579 protein-coding Rsbn1l round spermatid basic protein 1 like ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); COVID-19 (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955410 7453868 7528509 - 102010878 AGCD01010716;AGCD01010717;AGCD01010718;GBBH01186809;GBDF01262717;XM_005377211 XP_005377268 MODEL 8730210 protein-coding Sltm SAFB like transcription modulator ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog) NW_004955450 15691472 15748123 + 102013894 AGCD01042809;AGCD01042810;AGCD01042811;AGCD01042812;AGCD01042813;GBCB01022390;GBCE01053462;XM_013518874 XP_013374328 MODEL 8891459 ncrna LOC102011810 uncharacterized LOC102011810 NW_004955440 4672850 4697012 - 102011810 AGCD01036266;GBDF01015047;XR_262004 MODEL 9050458 protein-coding LOC102010235 cytochrome P450 4X1 ENCODES a protein that exhibits anandamide 14,15 epoxidase activity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog) NW_004955464 11373217 11415433 - 102010235 AGCD01050149;AGCD01050150;AGCD01050151;AGCD01050152;AGCD01050153;GBDI01243736;XM_013521750;XM_013521751;XM_013521752;XR_001236710 XP_013377204;XP_013377205;XP_013377206 MODEL 8783454 pseudo LOC102006467 thyroid transcription factor 1-associated protein 26-like NW_004955488 4546212 4563715 + 102006467 AGCD01059598 MODEL 8977257 protein-coding Ncbp1 nuclear cap binding protein subunit 1 ENCODES a protein that exhibits molecular adaptor activity (ortholog); RNA 7-methylguanosine cap binding (ortholog); INVOLVED IN 7-methylguanosine mRNA capping (ortholog); defense response to virus (ortholog); histone mRNA metabolic process (ortholog); PARTICIPATES IN 5'-end pre-mRNA capping pathway; RNA polymerase II transcription elongation pathway; ASSOCIATED WITH congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type II (ortholog); congenital myasthenic syndrome 14 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955419 27778300 27819878 - 102025123 AGCD01020448;GBDI01125923;XM_005382849 XP_005382906 MODEL 9029969 protein-coding Septin9 septin 9 INVOLVED IN actin cytoskeleton organization (ortholog); anterograde dendritic transport of neurotransmitter receptor complex (ortholog); positive regulation of non-motile cilium assembly (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Adenomatous Polyps (ortholog); amyotrophic neuralgia (ortholog); FOUND IN actin cytoskeleton (ortholog); axoneme (ortholog); cilium (ortholog) NW_004955506 4943108 5033088 - 102014381 AGCD01065350;AGCD01065351;GBBH01030877;GBDF01087331;XM_005407395 XP_005407452 MODEL 8706796 protein-coding LOC102018620 melanoma-associated antigen 8-like NW_004955498 2322033 2323007 - 102018620 AGCD01062784;XM_013505524 XP_013360978 MODEL 8821751 protein-coding Lgi3 leucine rich repeat LGI family member 3 INVOLVED IN regulation of exocytosis (ortholog); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); INTELLECTUAL DEVELOPMENTAL DISORDER WITH MUSCLE TONE ABNORMALITIES AND DISTAL SKELETAL DEFECTS (ortholog); FOUND IN extracellular space (ortholog); juxtaparanode region of axon (ortholog); synaptic vesicle (ortholog) NW_004955403 45634237 45644172 - 102004228 AGCD01002824;GBDK01189875;XM_005373650;XM_013513776 XP_005373707;XP_013369230 MODEL 8831670 protein-coding Tp73 tumor protein p73 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cerebrospinal fluid secretion (ortholog); digestive tract morphogenesis (ortholog); DNA damage response (ortholog); PARTICIPATES IN altered p53 signaling pathway; Ras mediated signaling pathway; ASSOCIATED WITH adenoma (ortholog); adult T-cell leukemia/lymphoma (ortholog); alveolar rhabdomyosarcoma (ortholog); FOUND IN cell junction (ortholog); centrosome (ortholog); chromatin (ortholog) NW_004955486 7914608 7961992 - 102025470 AGCD01059140;AGCD01059141;GBDJ01182267;XM_005404142;XM_005404143 XP_005404199;XP_005404200 MODEL 8739881 protein-coding Sra1 steroid receptor RNA activator 1 ENCODES a protein that exhibits nuclear androgen receptor binding (ortholog); steroid receptor RNA activator RNA binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN negative regulation of myoblast differentiation (ortholog); regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN estrogen signaling pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); congestive heart failure (ortholog); familial adenomatous polyposis 1 (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955418 126111 133498 + 102004386 AGCD01018668;GBDJ01085270;XM_005382026;XM_005382027 XP_005382083;XP_005382084 MODEL 8809961 pseudo LOC102015549 ras-related protein Rab-5A pseudogene NW_004955427 3406284 3411397 - 102015549 AGCD01026938 MODEL 8971914 pseudo LOC102018982 probable ribonuclease ZC3H12C pseudogene NW_004955543 2792081 2793759 - 102018982 AGCD01071662 MODEL 8921300 pseudo LOC102007950 tubulin-specific chaperone A-like NW_004955446 19105862 19111198 + 102007950 AGCD01040423 MODEL 8830903 protein-coding LOC102023264 translation initiation factor IF-2-like NW_004955418 18628035 18757375 + 102023264 AGCD01019177;AGCD01019178;AGCD01019179;AGCD01019180;AGCD01019181;AGCD01019182;GBBH01069334;XM_013512952;XR_001233506;XR_001233507;XR_001233508;XR_260566;XR_260568 XP_013368406 MODEL 8763512 protein-coding Trpc6 transient receptor potential cation channel subfamily C member 6 ENCODES a protein that exhibits actin binding (ortholog); actinin binding (ortholog); ATPase binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); cellular response to hypoxia (ortholog); negative regulation of dendrite morphogenesis (ortholog); PARTICIPATES IN endothelin signaling pathway; erythropoietin signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); asphyxiating thoracic dystrophy (ortholog); ataxia telangiectasia (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955412 4905039 5019678 - 102008513 AGCD01012608;AGCD01012609;AGCD01012610;AGCD01012611;AGCD01012612;GBCE01034660;GBDK01169350;XM_013511254 XP_013366708 MODEL 8791739 pseudo LOC102008331 cytoplasmic dynein 1 intermediate chain 2 pseudogene NW_004955500 4123771 4125723 + 102008331 AGCD01063770 MODEL 9021314 protein-coding Rarb retinoic acid receptor beta ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); heterocyclic compound binding (ortholog); nuclear receptor activity (ortholog); INVOLVED IN apoptotic process (ortholog); bone development (ortholog); cell population proliferation (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); asbestos-related lung carcinoma (ortholog); autism spectrum disorder (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955430 17067536 17457558 + 102013109 AGCD01029649;AGCD01029650;AGCD01029651;AGCD01029652;AGCD01029653;AGCD01029654;AGCD01029655;AGCD01029656;AGCD01029657;GBDF01287994;XM_005387488 XP_005387545 MODEL 8967301 protein-coding LOC102006830 hemoglobin subunit alpha NW_004955442 17005234 17006044 - 102006830 AGCD01037931;GBBH01003742;XM_005391672 XP_005391729 MODEL 8851991 protein-coding Psip1 PC4 and SRSF1 interacting protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); supercoiled DNA binding (ortholog); INVOLVED IN mRNA 5'-splice site recognition (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); response to heat (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); FOUND IN euchromatin (ortholog); heterochromatin (ortholog); nuclear periphery (ortholog) NW_004955434 18312646 18357753 - 102020276 AGCD01032562;GBDI01055139;XM_005388709;XM_005388710 XP_005388766;XP_005388767 MODEL 10075255 protein-coding LOC106149831 uncharacterized LOC106149831 NW_004955406 5749046 5754667 + 106149831 AGCD01005739;GBBH01106213;XM_013520227;XR_001236258 XP_013375681 MODEL 8869555 protein-coding LOC102011387 serine/threonine-protein phosphatase with EF-hands 2-like NW_004955797 7064 18498 + 102011387 AGCD01078368;GBCQ01026990;GBDJ01093079;XM_013510194 XP_013365648 MODEL 8785575 protein-coding Phyhip phytanoyl-CoA 2-hydroxylase interacting protein ENCODES a protein that exhibits protein tyrosine kinase binding (ortholog); INVOLVED IN protein localization (ortholog); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); FOUND IN cytoplasm (ortholog) NW_004955403 45698936 45710921 - 102005095 AGCD01002826;GBDJ01298008;XM_005373653;XM_005373654;XM_013513793;XM_013513796;XM_013513800;XM_013513803 XP_005373710;XP_005373711;XP_013369247;XP_013369250;XP_013369254;XP_013369257 MODEL 9021534 protein-coding LOC102024257 olfactory receptor 10AD1-like NW_004955500 7121240 7122420 - 102024257 AGCD01063901;XM_013505634 XP_013361088 MODEL 9035428 pseudo LOC102017459 arylacetamide deacetylase-like 4 NW_004955486 1078117 1079688 - 102017459 AGCD01058920 MODEL 9004400 protein-coding Slc3a1 solute carrier family 3 member 1 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN amino acid transport (ortholog); aspartate transmembrane transport (ortholog); gene expression (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); congenital myasthenic syndrome 22 (ortholog); cystinuria (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); vacuolar membrane (ortholog) NW_004955441 11381390 11418193 + 102003589 AGCD01037107;GBCQ01008312;XM_005390946 XP_005391003 MODEL 8814934 protein-coding Trim62 tripartite motif containing 62 ENCODES a protein that exhibits identical protein binding (ortholog); transcription coactivator activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN innate immune response (ortholog); negative regulation of epithelial to mesenchymal transition (ortholog); negative regulation of viral transcription (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN cytoplasm (ortholog) NW_004955452 11348001 11377413 - 102006865 AGCD01044335;GBCB01025292;XM_005395108 XP_005395165 MODEL 8808493 protein-coding Plppr4 phospholipid phosphatase related 4 ENCODES a protein that exhibits lipid phosphatase activity (ortholog); lysophosphatidic acid phosphatase activity (ortholog); INVOLVED IN axonogenesis (ortholog); G protein-coupled receptor signaling pathway (ortholog); inner ear development (ortholog); FOUND IN external side of plasma membrane (ortholog); glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog) NW_004955435 4085918 4112207 + 102021275 AGCD01032819;GBDF01303712;XM_005389095 XP_005389152 MODEL 9065969 protein-coding Brinp3 BMP/retinoic acid inducible neural specific 3 INVOLVED IN cellular response to retinoic acid (ortholog); central nervous system neuron differentiation (ortholog); exploration behavior (ortholog); ASSOCIATED WITH aggressive periodontitis (ortholog); cerebral infarction (ortholog); Chronic Periodontitis (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog) NW_004955406 27870115 28240328 - 102015074 AGCD01006290;AGCD01006291;AGCD01006292;AGCD01006293;AGCD01006294;AGCD01006295;GBDF01307752;XM_005375093;XM_005375094;XM_005375095 XP_005375150;XP_005375151;XP_005375152 MODEL 9024781 protein-coding Prmt1 protein arginine methyltransferase 1 ENCODES a protein that exhibits enzyme binding (ortholog); GATOR1 complex binding (ortholog); histone H4R3 methyltransferase activity (ortholog); INVOLVED IN cardiac muscle tissue development (ortholog); cellular response to methionine (ortholog); DNA damage response (ortholog); PARTICIPATES IN androgen signaling pathway; estrogen signaling pathway; histone modification pathway; ASSOCIATED WITH asthma (ortholog); cleft palate (ortholog); developmental and epileptic encephalopathy 12 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lysosomal membrane (ortholog) NW_004955559 1205340 1215672 - 102009115 AGCD01073634;AGCD01073635;AGCD01073636;GBBH01032002;XM_005412853;XM_005412854;XM_005412855;XM_005412856;XM_013508977;XM_013508978 XP_005412910;XP_005412911;XP_005412912;XP_005412913;XP_013364431;XP_013364432 MODEL 9025242 protein-coding LOC102011388 cytochrome P450 2D16-like NW_004956190 7085 8242 + 102011388 AGCD01079215;GBCQ01011641;GBDK01146022;XM_005415175 XP_005415232 MODEL 8825686 pseudo LOC102010572 methionine adenosyltransferase 2 subunit beta pseudogene NW_004955467 10161772 10163152 + 102010572 AGCD01051547 MODEL 9033362 protein-coding Rhbdl2 rhomboid like 2 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN plasma membrane (ortholog) NW_004955452 16506830 16553594 - 102020301 AGCD01044514;GBDF01188796;XM_005395233;XM_005395235 XP_005395290;XP_005395292 MODEL 8829036 protein-coding LOC102018625 leucine-rich repeat-containing protein 37A2-like NW_004955506 6704785 6744679 + 102018625 AGCD01065442;AGCD01065443;AGCD01065444;AGCD01065445;AGCD01065446;AGCD01065447;AGCD01065448;AGCD01065449;AGCD01065450;AGCD01065451;GBBH01032482;GBCE01006258;XM_005407497 XP_005407554 MODEL 10156518 protein-coding LOC106147005 translation initiation factor IF-2-like NW_004955511 2658127 2658431 + 106147005 AGCD01066424;GBDF01210847;XM_013506442 XP_013361896 MODEL 8704307 protein-coding Ptpn6 protein tyrosine phosphatase non-receptor type 6 ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); cytokine receptor binding (ortholog); natural killer cell lectin-like receptor binding (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); CD27 signaling pathway (ortholog); cell differentiation (ortholog); PARTICIPATES IN angiotensin II signaling pathway via AT2 receptor; epidermal growth factor/neuregulin signaling pathway; erythropoietin signaling pathway; ASSOCIATED WITH anogenital venereal wart (ortholog); autism spectrum disorder (ortholog); calcinosis (ortholog); FOUND IN alpha-beta T cell receptor complex (ortholog); apical dendrite (ortholog); cell-cell junction (ortholog) NW_004955413 4525954 4547177 + 102009165 AGCD01013621;GBCQ01152113;XM_005378847;XM_005378848 XP_005378904;XP_005378905 MODEL 39132560 snorna SNORD14 Small nucleolar RNA SNORD14 8919326 protein-coding Wdfy3 WD repeat and FYVE domain containing 3 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity (ortholog); INVOLVED IN aggrephagy (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 1 (ortholog); genetic disease (ortholog); FOUND IN Atg12-Atg5-Atg16 complex (ortholog); autophagosome (ortholog); autophagosome membrane (ortholog) NW_004955474 4764902 5045421 + 102025904 AGCD01054386;AGCD01054387;AGCD01054388;AGCD01054389;AGCD01054390;AGCD01054391;AGCD01054392;GBDK01190489;XM_005401374;XM_013502725;XM_013502726;XM_013502727;XM_013502728;XM_013502729;XM_013502730 XP_005401431;XP_013358179;XP_013358180;XP_013358181;XP_013358182;XP_013358183;XP_013358184 MODEL 8864018 protein-coding LOC102012583 putative alpha-1-antitrypsin-related protein NW_004955438 14225509 14229594 + 102012583 AGCD01035332;XM_005390440 XP_005390497 MODEL 8959305 protein-coding Perm1 PPARGC1 and ESRR induced regulator, muscle 1 INVOLVED IN regulation of DNA-templated transcription (ortholog); response to muscle activity (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955486 9731317 9736821 + 102011669 AGCD01059198;GBDF01221642;XM_005404289;XM_013504203;XM_013504204 XP_005404346;XP_013359657;XP_013359658 MODEL 39133320 snrna U4 U4 spliceosomal RNA 8964867 protein-coding Pcyt1a phosphate cytidylyltransferase 1A, choline ENCODES a protein that exhibits calmodulin binding (ortholog); choline-phosphate cytidylyltransferase activity (ortholog); identical protein binding (ortholog); INVOLVED IN B cell proliferation (ortholog); CDP-choline pathway (ortholog); isotype switching (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; lamivudine pharmacokinetics pathway; ASSOCIATED WITH autistic disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); glycogen granule (ortholog) NW_004955420 12464857 12513017 - 102010061 AGCD01020865;AGCD01020866;AGCD01020867;AGCD01020868;GBDF01002146;XM_005383124;XM_005383125;XM_005383126;XM_005383127;XM_005383129;XM_013513398 XP_005383181;XP_005383182;XP_005383183;XP_005383184;XP_005383186;XP_013368852 MODEL 8998774 protein-coding Thy1 Thy-1 cell surface antigen ENCODES a protein that exhibits enzyme binding (ortholog); GPI anchor binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell-cell adhesion (ortholog); cell-cell signaling (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN apical plasma membrane (ortholog); axolemma (ortholog); cell surface (ortholog) NW_004955412 20480284 20484958 - 102008928 AGCD01013009;GBDI01065511;XM_005378342 XP_005378399 MODEL 9065642 pseudo LOC102009452 serine/arginine repetitive matrix protein 1 pseudogene NW_004955451 7812936 7823923 - 102009452 AGCD01043254 MODEL 8889622 pseudo LOC102006469 signal recognition particle 14 kDa protein-like NW_004955492 7321458 7321798 + 102006469 AGCD01060786 MODEL 8960817 protein-coding Rcn2 reticulocalbin 2 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); nucleolus (ortholog) NW_004955450 1838836 1854045 + 102019002 AGCD01042371;GBCE01001531;XM_005393477 XP_005393534 MODEL 8789674 protein-coding LOC102003666 dnaJ homolog subfamily B member 6-like NW_004955423 9538198 9539071 - 102003666 AGCD01023662;GBDF01008801;XM_013514572 XP_013370026 MODEL 8870465 protein-coding Ncbp2 nuclear cap binding protein subunit 2 ENCODES a protein that exhibits DNA binding (ortholog); mRNA binding (ortholog); RNA 7-methylguanosine cap binding (ortholog); INVOLVED IN histone mRNA metabolic process (ortholog); mRNA cis splicing, via spliceosome (ortholog); mRNA export from nucleus (ortholog); PARTICIPATES IN 5'-end pre-mRNA capping pathway; RNA polymerase II transcription elongation pathway; ASSOCIATED WITH autistic disorder (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); schizophrenia (ortholog); FOUND IN ciliary basal body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955420 12979368 12992500 - 102015727 AGCD01020908;AGCD01020909;AGCD01020910;GBCQ01098057;XM_005383144 XP_005383201 MODEL 8849262 protein-coding Slc3a2 solute carrier family 3 member 2 ENCODES a protein that exhibits aromatic amino acid transmembrane transporter activity (ortholog); double-stranded RNA binding (ortholog); exogenous protein binding (ortholog); INVOLVED IN cellular response to glucose starvation (ortholog); isoleucine transport (ortholog); L-alanine import across plasma membrane (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); autism spectrum disorder (ortholog); intellectual disability (ortholog); FOUND IN amino acid transport complex (ortholog); apical plasma membrane (ortholog); apical pole of neuron (ortholog) NW_004955599 376133 391434 - 102020181 AGCD01076642;AGCD01076643;GBBH01000426;GBDK01018077;XM_013510062 XP_013365516 MODEL 8942557 protein-coding Slc25a28 solute carrier family 25 member 28 ENCODES a protein that exhibits ferrous iron transmembrane transporter activity (ortholog); PARTICIPATES IN iron uptake pathway; FOUND IN mitochondrion (ortholog) NW_004955507 5520915 5530615 - 102005067 AGCD01065678;GBDJ01079892;GBDK01080161;XM_013506230 XP_013361684 MODEL 8843061 protein-coding Brip1 BRCA1 interacting DNA helicase 1 ENCODES a protein that exhibits 5'-3' DNA helicase activity (ortholog); catalytic activity, acting on a nucleic acid (ortholog); chromatin binding (ortholog); INVOLVED IN cellular response to angiotensin (ortholog); cellular response to hypoxia (ortholog); cellular response to vitamin (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); Alzheimer's disease (ortholog); Bone Metastasis (ortholog); FOUND IN BRCA1-B complex (ortholog); cytoplasm (ortholog); nuclear membrane (ortholog) NW_004955451 2705834 2820610 - 102010854 AGCD01043022;AGCD01043023;GBDK01359826;XM_013519414 XP_013374868 MODEL 8739963 protein-coding LOC102007951 cytochrome P450 3A9-like NW_004955573 1323275 1354705 - 102007951 AGCD01075041;AGCD01075042;AGCD01075043;AGCD01075044;XM_013509451 XP_013364905 MODEL 9026248 protein-coding LOC102021543 sulfotransferase 6B1-like NW_004955413 17616399 17636221 - 102021543 AGCD01014159;AGCD01014160;GBDK01289164;XM_005379072 XP_005379129 MODEL 8917389 protein-coding Srarp steroid receptor associated and regulated protein ENCODES a protein that exhibits nuclear estrogen receptor binding (ortholog); INVOLVED IN positive regulation of intracellular estrogen receptor signaling pathway (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955527 2229664 2232201 - 102006605 AGCD01069425;GBCQ01152897;XM_005409853 XP_005409910 MODEL 8813534 protein-coding Polr3e RNA polymerase III subunit E PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH autistic disorder (ortholog); chromosome 16p12.1 deletion syndrome (ortholog); schizophrenia (ortholog); FOUND IN nucleoplasm (ortholog); RNA polymerase III complex (ortholog) NW_004955493 933381 962314 + 102012547 AGCD01060873;GBDF01119676;XM_005405071;XM_005405076;XM_005405077;XM_013504853 XP_005405128;XP_005405133;XP_005405134;XP_013360307 MODEL 8764814 protein-coding LOC102005393 long-chain-fatty-acid--CoA ligase ACSBG2-like NW_004955495 3360519 3386816 - 102005393 AGCD01061850;AGCD01061851;AGCD01061852;GBDF01010958;GBDF01197189;XM_013505360 XP_013360814 MODEL 10308939 protein-coding Rsc1a1 regulator of solute carriers 1 ENCODES a protein that exhibits sodium channel inhibitor activity (ortholog); INVOLVED IN intestinal absorption (ortholog); negative regulation of D-glucose transmembrane transport (ortholog); negative regulation of Golgi to plasma membrane protein transport (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Hereditary Pancreatitis (ortholog); obesity (ortholog); FOUND IN brush border (ortholog); cell junction (ortholog); membrane (ortholog) NW_004955527 2492904 2495318 - 106147202 AGCD01069439;GBCQ01176464;XM_013507398 XP_013362852 MODEL 8801590 protein-coding Rhbdl3 rhomboid like 3 NW_004955481 7233305 7276085 + 102024907 AGCD01057058;GBBH01210574;GBCE01043483;XM_005402817 XP_005402874 MODEL 10261082 protein-coding LOC106147006 uncharacterized LOC106147006 NW_004955511 5643139 5652966 - 106147006 AGCD01066573;GBCE01154526;XM_013506457;XM_013506458;XM_013506459 XP_013361911;XP_013361912;XP_013361913 MODEL 8919697 pseudo LOC102011811 PCNA-associated factor pseudogene NW_004955440 19528120 19528458 - 102011811 AGCD01036637 MODEL 8971229 protein-coding LOC102024261 olfactory receptor 1052-like NW_004955511 2737665 2739242 - 102024261 AGCD01066427;GBDF01076871;XM_005408019 XP_005408076 MODEL 10334432 ncrna LOC106149832 uncharacterized LOC106149832 NW_004955454 4129719 4131987 - 106149832 AGCD01045114;GBDF01288538;XR_001236259 MODEL 126903052 snorna SNORA18 small nucleolar RNA, H/ACA box 18 39133321 snrna U4 U4 spliceosomal RNA 8765735 pseudo LOC102012585 cytochrome c oxidase protein 20 homolog pseudogene NW_004955441 6084988 6089834 + 102012585 AGCD01036899;XM_005391041 MODEL 8733829 ncrna LOC102017461 uncharacterized LOC102017461 NW_004955421 27031027 27040209 - 102017461 AGCD01022278;GBDF01222098;XR_001233849 MODEL 8930811 protein-coding Pkn2 protein kinase N2 ENCODES a protein that exhibits histone deacetylase binding (ortholog); kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN apical junction assembly (ortholog); epithelial cell migration (ortholog); positive regulation of cytokinesis (ortholog); FOUND IN apical junction complex (ortholog); centrosome (ortholog); cleavage furrow (ortholog) NW_004955423 5467017 5575435 - 102024815 AGCD01023561;AGCD01023562;AGCD01023563;GBDI01221436;XM_013514513 XP_013369967 MODEL 8756901 protein-coding Tpbg trophoblast glycoprotein INVOLVED IN cell chemotaxis (ortholog); dendrite arborization (ortholog); mesenchymal cell migration (ortholog); ASSOCIATED WITH immunodeficiency 23 (ortholog); Prostatic Neoplasms (ortholog); FOUND IN axon terminus (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955411 10203144 10206711 + 102015182 AGCD01011775;AGCD01011776;GBBH01076595;XM_013510911 XP_013366365 MODEL 8703977 pseudo LOC102015560 RNA-binding protein 7 pseudogene NW_004955434 16063246 16064603 - 102015560 AGCD01032511 MODEL 8787143 protein-coding Rab2b RAB2B, member RAS oncogene family INVOLVED IN defense response to virus (ortholog); Golgi organization (ortholog); innate immune response (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); cone-rod dystrophy 13 (ortholog); purine nucleoside phosphorylase deficiency (ortholog); FOUND IN acrosomal vesicle (ortholog); autophagosome membrane (ortholog); Golgi apparatus (ortholog) NW_004955550 2180326 2195523 - 102013652 AGCD01072611;GBDF01007040;XM_005412119 XP_005412176 MODEL 9053667 protein-coding Plppr5 phospholipid phosphatase related 5 INVOLVED IN positive regulation of filopodium assembly (ortholog); positive regulation of neuron projection development (ortholog); FOUND IN plasma membrane (ortholog) NW_004955435 3700217 3818532 - 102020949 AGCD01032802;AGCD01032803;AGCD01032804;AGCD01032805;GBDF01209569;GBDJ01158982;XM_013516396 XP_013371850 MODEL 8842550 protein-coding Otp orthopedia homeobox ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN dopaminergic neuron differentiation (ortholog); forebrain neuron differentiation (ortholog); hypothalamus cell differentiation (ortholog); ASSOCIATED WITH Hermansky-Pudlak syndrome 2 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN fibrillar center (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955425 23350449 23358189 + 102016173 AGCD01025844;XM_005386024 XP_005386081 MODEL 8825794 protein-coding Lgi4 leucine rich repeat LGI family member 4 INVOLVED IN adult locomotory behavior (ortholog); glial cell development (ortholog); glial cell proliferation (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita-1 (ortholog); Brugada syndrome 5 (ortholog); childhood absence epilepsy (ortholog); FOUND IN extracellular space (ortholog) NW_004955468 4441808 4456884 - 102012625 AGCD01051910;GBDF01017792;XM_013522439;XM_013522440;XR_001236912 XP_013377893;XP_013377894 MODEL 8795529 protein-coding Paqr7 progestin and adipoQ receptor family member 7 ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); retinitis pigmentosa 59 (ortholog) NW_004955452 5338224 5342793 - 102010661 AGCD01044018;GBCQ01002034;XM_005394835 XP_005394892 MODEL 8706302 protein-coding Emd emerin ENCODES a protein that exhibits actin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN amyloid fibril formation (ortholog); cellular response to growth factor stimulus (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cortical endoplasmic reticulum (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955580 864532 866904 - 102027697 AGCD01075627;GBDK01089927;XM_005414187 XP_005414244 MODEL 8991751 ncrna LOC102018626 uncharacterized LOC102018626 NW_004955507 2802458 2809081 + 102018626 AGCD01065594;GBDF01153258;XR_264374 MODEL 8717791 pseudo LOC102008333 thrombospondin type-1 domain-containing protein 1-like NW_004955426 16226528 16227149 - 102008333 AGCD01026464 MODEL 8784625 protein-coding LOC102023266 E3 ubiquitin-protein ligase TRIM38-like NW_004955483 1099077 1110250 + 102023266 AGCD01057640;AGCD01057641;AGCD01057642;AGCD01057643;GBCE01118982;GBCE01119007;XM_005403317 XP_005403374 MODEL 8955665 protein-coding LOC102007953 olfactory receptor 2B6-like NW_004955576 1156143 1157078 + 102007953 AGCD01075361;XM_005413942 XP_005413999 MODEL 8723724 protein-coding Slu7 SLU7 homolog, splicing factor ENCODES a protein that exhibits pre-mRNA 3'-splice site binding (ortholog); second spliceosomal transesterification activity (ortholog); zinc ion binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); cellular response to heat (ortholog); intracellular protein transport (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Weight Gain (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955408 14268958 14288114 - 102027148 AGCD01008391;GBDJ01087934;XM_005376265 XP_005376322 MODEL 9039010 protein-coding LOC102011813 keratin, type II cytoskeletal 74 NW_004955547 2973452 2981010 - 102011813 AGCD01072302;GBDF01116746;XM_005411949 XP_005412006 MODEL 8752356 protein-coding Trim63 tripartite motif containing 63 ENCODES a protein that exhibits titin binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); muscle contraction (ortholog); myotube cell development (ortholog); ASSOCIATED WITH Atrophy (ortholog); autosomal recessive hypercholesterolemia (ortholog); Cardiomegaly (ortholog); FOUND IN contractile muscle fiber (ortholog); Cul4-RING E3 ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955452 5517969 5531490 - 102012601 AGCD01044038;AGCD01044039;GBDI01181650;XM_005394841 XP_005394898 MODEL 8715336 protein-coding Perp p53 apoptosis effector related to PMP22 INVOLVED IN amelogenesis (ortholog); desmosome organization (ortholog); heterotypic cell-cell adhesion (ortholog); ASSOCIATED WITH Erythrokeratodermia Variabilis et Progressiva 7 (ortholog); Familial Behcet-Like Autoinflammatory Syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); desmosome (ortholog); Golgi apparatus (ortholog) NW_004955436 21425321 21430780 + 102007150 AGCD01034054;GBCC01000076;GBDI01001313;XM_013516698 XP_013372152 MODEL 39131764 snorna SNORA21 small nucleolar RNA, H/ACA box 21 8962666 ncrna LOC102010573 uncharacterized LOC102010573 NW_004955468 2472919 2491755 + 102010573 AGCD01051821;AGCD01051822;AGCD01051823;GBDF01158088;XR_263379 MODEL 39131579 protein-coding NCBP2AS2 NCBP2 antisense 2 (head to head) 8822029 protein-coding Trpc7 transient receptor potential cation channel subfamily C member 7 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); lung cancer (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog) NW_004955408 31260767 31408852 - 102015178 AGCD01008824;GBDF01075659;XM_013507541 XP_013362995 MODEL 8880799 protein-coding Ptpn7 protein tyrosine phosphatase non-receptor type 7 INVOLVED IN protein dephosphorylation (ortholog); ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog) NW_004955406 38233409 38249940 - 102022461 AGCD01006598;AGCD01006599;GBCE01150962;XM_005375204;XM_005375205;XM_005375206;XM_005375207;XM_013522339;XM_013522342;XM_013522343 XP_005375261;XP_005375262;XP_005375263;XP_005375264;XP_013377793;XP_013377796;XP_013377797 MODEL 39132512 snorna SNORD14 Small nucleolar RNA SNORD14 9055647 ncrna LOC102010236 uncharacterized LOC102010236 NW_004955465 1021083 1041695 - 102010236 AGCD01050329;GBDF01287130;XR_263230 MODEL 9011370 protein-coding LOC102021545 neuroblastoma breakpoint family member 4-like NW_004955468 10000866 10052333 + 102021545 AGCD01052065;AGCD01052066;GBDK01417179;XM_005400141;XM_013522485;XM_013522486 XP_005400198;XP_013377939;XP_013377940 MODEL 8755676 protein-coding Tpbgl trophoblast glycoprotein like ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog) NW_004955414 16580847 16583930 - 102015400 AGCD01015219;AGCD01015220;GBCE01168697;GBDF01122676;XM_013511705 XP_013367159 MODEL 8802541 protein-coding Lgmn legumain ENCODES a protein that exhibits cysteine-type endopeptidase activity (ortholog); endopeptidase activator activity (ortholog); peptidase activity (ortholog); INVOLVED IN antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); associative learning (ortholog); cellular response to amyloid-beta (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); Experimental Liver Cirrhosis (ortholog); High Myopia (ortholog); FOUND IN apical part of cell (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955438 14905856 14938722 - 102027677 AGCD01035355;AGCD01035356;GBBH01061269;XM_005390332 XP_005390389 MODEL 8888047 ncrna LOC102010990 uncharacterized LOC102010990 NW_004955471 9880793 9917131 + 102010990 AGCD01053222;GBDF01194926;XR_263532 MODEL 8793759 pseudo LOC102005395 DNA polymerase delta subunit 4 pseudogene NW_004955425 561831 562286 - 102005395 AGCD01025186 MODEL 8936139 protein-coding Wdfy4 WDFY family member 4 INVOLVED IN antigen processing and presentation (ortholog); CD8-positive, alpha-beta T cell activation (ortholog); cellular response to virus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Cockayne syndrome B (ortholog); Developmental Disabilities (ortholog) NW_004955556 1178970 1421139 - 102004981 AGCD01073187;AGCD01073188;AGCD01073189;AGCD01073190;AGCD01073191;AGCD01073192;AGCD01073193;AGCD01073194;GBDK01194697;XM_013508790;XM_013508791;XM_013508792;XM_013508793;XM_013508794;XM_013508795;XM_013508796;XM_013508797;XM_013508798 XP_013364244;XP_013364245;XP_013364246;XP_013364247;XP_013364248;XP_013364249;XP_013364250;XP_013364251;XP_013364252 MODEL 8918858 protein-coding Rsf1 remodeling and spacing factor 1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); histone binding (ortholog); histone octamer slider activity (ortholog); INVOLVED IN chromatin organization (ortholog); chromatin remodeling (ortholog); DNA-templated transcription initiation (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RSF complex (ortholog) NW_004955414 14084812 14212162 + 102007538 AGCD01015141;AGCD01015142;AGCD01015143;GBDF01221258;XM_005379827;XM_013511807 XP_005379884;XP_013367261 MODEL 8997720 protein-coding Rhbg Rh family B glycoprotein ENCODES a protein that exhibits ammonium channel activity (ortholog); ankyrin binding (ortholog); carbon dioxide transmembrane transporter activity (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); transepithelial ammonium transport (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN basolateral plasma membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955545 2491417 2504013 + 102027116 AGCD01071906;AGCD01071907;GBCQ01000909;XM_005411675;XM_005411676;XM_013508364;XR_001232203 XP_005411732;XP_005411733;XP_013363818 MODEL 9018997 protein-coding LOC102018989 olfactory receptor 11H7-like NW_004955550 983331 984314 + 102018989 AGCD01072535;XM_005412041 XP_005412098 MODEL 39133322 snrna U4 U4 spliceosomal RNA 8968201 protein-coding LOC102011390 kynurenine/alpha-aminoadipate aminotransferase, mitochondrial-like NW_004955403 36263930 36284758 + 102011390 AGCD01002535;AGCD01002536;GBCQ01008057;GBCQ01008066;XM_013513334 XP_013368788 MODEL 8844853 ncrna LOC102011816 uncharacterized LOC102011816 NW_004955443 10236461 10240981 - 102011816 AGCD01038372;GBDF01078584;XR_262203 MODEL 8985404 protein-coding Slc40a1 solute carrier family 40 member 1 ENCODES a protein that exhibits ferrous iron transmembrane transporter activity (ortholog); identical protein binding (ortholog); iron ion transmembrane transporter activity (ortholog); INVOLVED IN apoptotic process (ortholog); endothelium development (ortholog); establishment of localization in cell (ortholog); PARTICIPATES IN iron efflux pathway; ASSOCIATED WITH aceruloplasminemia (ortholog); anemia (ortholog); autistic disorder (ortholog); FOUND IN basolateral plasma membrane (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955403 9253734 9271732 + 102007721 AGCD01001904;GBCE01003262;XM_005373321 XP_005373378 MODEL 8972932 protein-coding Brix1 biogenesis of ribosomes BRX1 ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog) NW_004955426 20042274 20051606 + 102005397 AGCD01026560;GBDF01054030;XM_005386187 XP_005386244 MODEL 8986048 protein-coding LOC102006831 uncharacterized LOC102006831 NW_004955442 12111453 12371491 - 102006831 AGCD01037728;AGCD01037729;AGCD01037730;XM_005391851 XP_005391908 MODEL 8845125 protein-coding LOC102018628 olfactory receptor 8K3-like NW_004955511 1357599 1358540 + 102018628 AGCD01066365;XM_013506373 XP_013361827 MODEL 9044543 protein-coding Eme1 essential meiotic structure-specific endonuclease 1 ENCODES a protein that exhibits DNA binding (ortholog); double-stranded DNA endonuclease activity (ortholog); INVOLVED IN double-strand break repair (ortholog); replication fork processing (ortholog); resolution of mitotic recombination intermediates (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); osteogenesis imperfecta type 1 (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN chromatin (ortholog); endodeoxyribonuclease complex (ortholog); heterochromatin (ortholog) NW_004955451 11328759 11336099 - 102014521 AGCD01043349;GBDK01116633;XM_005394175;XM_013519096 XP_005394232;XP_013374550 MODEL 9067021 protein-coding Polr3f RNA polymerase III subunit F ENCODES a protein that exhibits 4 iron, 4 sulfur cluster binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN positive regulation of innate immune response (ortholog); positive regulation of interferon-beta production (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH congenital dyserythropoietic anemia type II (ortholog); familial hyperinsulinemic hypoglycemia 1 (ortholog); immunodeficiency 101 (ortholog); FOUND IN RNA polymerase III complex (ortholog) NW_004955415 27022081 27036475 + 102016803 AGCD01016621;AGCD01016622;GBDF01221498;XM_013512230;XM_013512231 XP_013367684;XP_013367685 MODEL 10092721 protein-coding LOC106147007 putative uncharacterized protein WWC2-AS2 NW_004955511 4122090 4122864 - 106147007 AGCD01066493;GBCQ01013517;XM_013506461 XP_013361915 MODEL 8791941 protein-coding Serac1 serine active site containing 1 INVOLVED IN extracellular matrix organization (ortholog); intracellular cholesterol transport (ortholog); phosphatidylglycerol acyl-chain remodeling (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); Deafness (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); extracellular matrix (ortholog) NW_004955439 4234440 4291947 + 102013761 AGCD01035706;AGCD01035707;AGCD01035708;GBBH01082146;XM_005390526 XP_005390583 MODEL 8846200 protein-coding Thyn1 thymocyte nuclear protein 1 ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); Isobutyryl-CoA Dehydrogenase Deficiency (ortholog); FOUND IN nucleus (ortholog) NW_004955412 35061874 35067631 - 102003426 AGCD01013397;GBDJ01191132;XM_005378596;XM_013511064;XM_013511065;XM_013511066;XM_013511067 XP_005378653;XP_013366518;XP_013366519;XP_013366520;XP_013366521 MODEL 9009075 protein-coding Prmt2 protein arginine methyltransferase 2 ENCODES a protein that exhibits beta-catenin binding (ortholog); histone H3 methyltransferase activity (ortholog); histone methyltransferase activity (ortholog); INVOLVED IN negative regulation of DNA-binding transcription factor activity (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of G1/S transition of mitotic cell cycle (ortholog); PARTICIPATES IN histone modification pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH asthma (ortholog); autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955407 42991305 43019332 + 102021733 AGCD01007902;GBDF01089964;XM_013505814 XP_013361268 MODEL 39132523 snorna SNORD14 Small nucleolar RNA SNORD14 10135390 protein-coding Brk1 BRICK1 subunit of SCAR/WAVE actin nucleating complex ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); small GTPase binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cell motility (ortholog); fibroblast proliferation (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); Candidiasis, Familial, 9 (ortholog); familial erythrocytosis 2 (ortholog); FOUND IN lamellipodium (ortholog); SCAR complex (ortholog) NW_004955561 1545921 1554423 + 106147451 AGCD01073856;GBDF01010733;XM_013509100 XP_013364554 MODEL 8865535 protein-coding LOC102007955 olfactory receptor 2H1-like NW_004955583 61165 64037 + 102007955 AGCD01075793;GBDK01227600;XM_005414286 XP_005414343 MODEL 8869401 ncrna LOC102006479 uncharacterized LOC102006479 NW_004955497 7454409 7464014 - 102006479 AGCD01062676;GBDF01019845;XR_264210 MODEL 9024009 ncrna LOC102009454 uncharacterized LOC102009454 NW_004955452 11752081 11769463 + 102009454 AGCD01044343;GBCB01079032;XR_262680 MODEL 8941572 protein-coding LOC102010999 uncharacterized LOC102010999 NW_004955415 28977064 28978164 + 102010999 AGCD01016646;XM_005381137 XP_005381194 MODEL 9064575 ncrna LOC102015565 uncharacterized LOC102015565 NW_004955533 708206 712745 - 102015565 AGCD01070326;GBCQ01050607;XR_264739 MODEL 9056170 protein-coding Pkn3 protein kinase N3 INVOLVED IN epithelial cell migration (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955570 1121803 1131296 + 102006720 AGCD01074791;GBDF01093773;GBDI01353130;XM_005413576;XM_005413578 XP_005413633;XP_005413635 MODEL 8757047 protein-coding Pes1 pescadillo ribosomal biogenesis factor 1 INVOLVED IN cell population proliferation (ortholog); maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH cholangiocarcinoma (ortholog); FOUND IN chromosome (ortholog); condensed chromosome (ortholog); cytosol (ortholog) NW_004955455 4794189 4808235 - 102023433 AGCD01045688;GBDF01084939;XM_005396270 XP_005396327 MODEL 8814966 protein-coding Rhce Rh blood group CcEe antigens ASSOCIATED WITH congenital hemolytic anemia (ortholog); megacolon (ortholog); Rh-Null Disease, Amorph Type (ortholog); FOUND IN ankyrin-1 complex (ortholog) NW_004955452 4912882 4956174 - 102007179 AGCD01044001;AGCD01044002;AGCD01044003;GBDF01248710;XM_005394822;XM_013519668 XP_005394879;XP_013375122 MODEL 8917192 protein-coding Rskr ribosomal protein S6 kinase related NW_004955481 4544798 4549005 + 102028536 AGCD01056943;GBDJ01001838;XM_005402741;XM_013503448 XP_005402798;XP_013358902 MODEL 8923585 protein-coding Snx14 sorting nexin 14 ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); postsynaptic modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 20 (ortholog); cerebellar ataxia (ortholog); epilepsy (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); late endosome (ortholog) NW_004955411 12967980 13048839 - 102020226 AGCD01011862;AGCD01011863;AGCD01011864;AGCD01011865;AGCD01011866;GBDF01122706;XM_005377702;XM_005377703 XP_005377759;XP_005377760 MODEL 8829762 protein-coding Plrg1 pleiotropic regulator 1 INVOLVED IN mRNA splicing, via spliceosome (ortholog); positive regulation of G1/S transition of mitotic cell cycle (ortholog); protein localization to nucleus (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN catalytic step 2 spliceosome (ortholog); DNA replication factor A complex (ortholog); fibrillar center (ortholog) NW_004955471 8764465 8777396 - 102007988 AGCD01053193;AGCD01053194;GBDJ01085184;XM_005400930 XP_005400987 MODEL 8757068 protein-coding Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); deNEDDylase activity (ortholog); ubiquitin binding (ortholog); INVOLVED IN cellular response to interleukin-1 (ortholog); DNA damage response (ortholog); negative regulation of double-strand break repair (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH IgA glomerulonephritis (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog) NW_004955422 21047184 21055596 - 102024350 AGCD01023099;GBDK01074396;XM_005384653 XP_005384710 MODEL 8778540 protein-coding Pskh1 protein serine kinase H1 ENCODES a protein that exhibits protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN determination of left/right symmetry (ortholog); heart development (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); Progressive Familial Intrahepatic Cholestasis 13 (ortholog); FOUND IN cilium (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955484 8784128 8813669 - 102020248 AGCD01058396;AGCD01058397;GBDK01196210;XM_005403614 XP_005403671 MODEL 9051278 protein-coding LOC102011817 40S ribosomal protein S27-like NW_004955444 12300883 12301137 - 102011817 AGCD01039067;XM_005392136 XP_005392193 MODEL 8888279 protein-coding Pcyt1b phosphate cytidylyltransferase 1B, choline ENCODES a protein that exhibits choline-phosphate cytidylyltransferase activity (ortholog); identical protein binding (ortholog); INVOLVED IN CDP-choline pathway (ortholog); ovarian follicle development (ortholog); phosphatidylcholine biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 1 (ortholog); juvenile rheumatoid arthritis (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955509 4896208 4990101 - 102019300 AGCD01066090;AGCD01066091;AGCD01066092;AGCD01066093;AGCD01066094;GBCE01037339;XM_005407849;XM_005407850;XM_005407851;XM_005407852;XM_005407853;XM_013506300;XM_013506301 XP_005407906;XP_005407907;XP_005407908;XP_005407909;XP_005407910;XP_013361754;XP_013361755 MODEL 10188305 ncrna LOC106149833 uncharacterized LOC106149833 NW_004955454 16538201 16615791 + 106149833 AGCD01045519;AGCD01045520;GBDF01288361;XR_001236260 MODEL 8733791 protein-coding Trpm1 transient receptor potential cation channel subfamily M member 1 ENCODES a protein that exhibits calcium channel activity (ortholog); monoatomic cation channel activity (ortholog); monoatomic cation transmembrane transporter activity (ortholog); INVOLVED IN calcium ion import across plasma membrane (ortholog); cellular response to light stimulus (ortholog); G protein-coupled glutamate receptor signaling pathway (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 15q13.3 microdeletion syndrome (ortholog); FOUND IN cell tip (ortholog); dendrite (ortholog); endoplasmic reticulum (ortholog) NW_004955416 29846374 29880922 - 102017234 AGCD01017668;XM_013512689 XP_013368143 MODEL 8931319 protein-coding Rhcg Rh family C glycoprotein ENCODES a protein that exhibits ammonium channel activity (ortholog); ankyrin binding (ortholog); carbon dioxide transmembrane transporter activity (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); intracellular monoatomic ion homeostasis (ortholog); regulation of pH (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); D-2-hydroxyglutaric aciduria 2 (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955416 15639425 15657708 + 102028747 AGCD01017336;AGCD01017337;AGCD01017338;GBDI01026790;XM_005381554 XP_005381611 MODEL 8766958 ncrna LOC102012592 uncharacterized LOC102012592 NW_004955583 223012 224427 - 102012592 AGCD01075806;GBDF01221589;XR_001232492 MODEL 8959483 protein-coding Slurp1 secreted LY6/PLAUR domain containing 1 ENCODES a protein that exhibits acetylcholine receptor activator activity (ortholog); INVOLVED IN locomotory behavior (ortholog); negative regulation of cell migration (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); mal de Meleda (ortholog); FOUND IN extracellular space (ortholog) NW_004955454 1440534 1449123 - 102020752 AGCD01044969;GBDI01110694;XM_005395737;XM_005395738;XM_013520069 XP_005395794;XP_005395795;XP_013375523 MODEL 8923815 protein-coding LOC102003667 phylloquinone omega-hydroxylase CYP4F2-like NW_004955495 7690774 7703651 - 102003667 AGCD01062160;GBDI01129621;XM_013505322;XM_013505323 XP_013360776;XP_013360777 MODEL 9061676 pseudo LOC102017467 S-phase kinase-associated protein 1 pseudogene NW_004955422 16611196 16612201 - 102017467 AGCD01022898 MODEL 8709255 protein-coding Trim65 tripartite motif containing 65 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); negative regulation of inflammatory response (ortholog); negative regulation of NLRP3 inflammasome complex assembly (ortholog); ASSOCIATED WITH peroxisomal acyl-CoA oxidase deficiency (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955506 6362360 6366743 + 102010076 AGCD01065413;AGCD01065414;GBCE01065169;GBDI01290894;XM_013506003 XP_013361457 MODEL 150537118 snorna SNORA23 small nucleolar RNA, H/ACA box 23 8928725 pseudo LOC102018991 serine/threonine/tyrosine-interacting protein pseudogene NW_004955551 886953 887825 + 102018991 AGCD01072679 MODEL 8933752 protein-coding Polr3g RNA polymerase III subunit G ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN cell population proliferation (ortholog); epithelial cell proliferation (ortholog); positive regulation of innate immune response (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH autistic disorder (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955418 21116812 21149818 - 102027072 AGCD01019257;AGCD01019258;AGCD01019259;AGCD01019260;GBDK01321607;XM_005382276;XM_005382277;XM_005382278;XM_005382279;XM_013512972 XP_005382333;XP_005382334;XP_005382335;XP_005382336;XP_013368426 MODEL 8700440 protein-coding Srbd1 S1 RNA binding domain 1 ASSOCIATED WITH Lynch syndrome (ortholog) NW_004955441 12374940 12642295 - 102009549 AGCD01037121;AGCD01037122;AGCD01037123;AGCD01037124;AGCD01037125;AGCD01037126;AGCD01037127;AGCD01037128;AGCD01037129;AGCD01037130;AGCD01037131;GBCB01074860;XM_013517546;XM_013517547;XM_013517548;XM_013517549;XM_013517550;XM_013517551;XM_013517552 XP_013373000;XP_013373001;XP_013373002;XP_013373003;XP_013373004;XP_013373005;XP_013373006 MODEL 8811238 pseudo LOC102010574 sodium channel modifier 1 pseudogene NW_004955413 9333530 9334670 - 102010574 AGCD01013903 MODEL 8988216 protein-coding Tia1 TIA1 cytotoxic granule associated RNA binding protein ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); mRNA 3'-UTR binding (ortholog); RNA binding (ortholog); INVOLVED IN negative regulation of cytokine production (ortholog); negative regulation of translation (ortholog); positive regulation of epithelial cell apoptotic process (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 26 (ortholog); genetic disease (ortholog); spinal muscular atrophy with lower extremity predominant 2A (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955424 14887722 14920844 + 102006791 AGCD01024664;GBDF01163127;XM_005385618;XM_005385619;XM_005385620;XM_005385621;XM_005385622;XM_005385623;XM_013514641;XR_001234178 XP_005385675;XP_005385676;XP_005385677;XP_005385678;XP_005385679;XP_005385680;XP_013370095 MODEL 8917430 pseudo LOC102011002 dolichol-phosphate mannosyltransferase subunit 1 pseudogene NW_004955416 12229992 12241469 - 102011002 AGCD01017202 MODEL 8802130 protein-coding Phyhipl phytanoyl-CoA 2-hydroxylase interacting protein like FOUND IN cytoplasm (ortholog) NW_004955425 12841027 12885260 + 102012777 AGCD01025523;GBDF01003440;XM_005385926 XP_005385983 MODEL 9035429 protein-coding Ncbp3 nuclear cap binding subunit 3 ENCODES a protein that exhibits mRNA binding (ortholog); RNA 7-methylguanosine cap binding (ortholog); RNA cap binding (ortholog); INVOLVED IN defense response to virus (ortholog); mRNA export from nucleus (ortholog); snRNA export from nucleus (ortholog); ASSOCIATED WITH Canavan disease (ortholog); FOUND IN cytoplasm (ortholog); nuclear cap binding complex (ortholog); nuclear speck (ortholog) NW_004955467 13011755 13043161 + 102017649 AGCD01051661;AGCD01051662;AGCD01051663;AGCD01051664;GBDF01158450;XM_005399706;XM_005399707 XP_005399763;XP_005399764 MODEL 8797986 protein-coding LOC102024264 olfactory receptor 4C15-like NW_004955511 221759 222697 + 102024264 AGCD01066325;XM_013506519 XP_013361973 MODEL 9016285 protein-coding LOC102021546 NKG2-A/NKG2-B type II integral membrane protein-like NW_004955413 7564558 7569806 + 102021546 AGCD01013823;GBDK01253184;XM_005379621 XP_005379678 MODEL 8773506 protein-coding Slc41a1 solute carrier family 41 member 1 ENCODES a protein that exhibits inorganic cation transmembrane transporter activity (ortholog); magnesium ion transmembrane transporter activity (ortholog); magnesium:sodium antiporter activity (ortholog); INVOLVED IN cellular response to magnesium ion (ortholog); intracellular magnesium ion homeostasis (ortholog); magnesium ion transmembrane transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955406 41481831 41502992 - 102013380 AGCD01006685;GBCQ01039252;XM_005375375;XM_005375376 XP_005375432;XP_005375433 MODEL 8838219 ncrna LOC102011818 uncharacterized LOC102011818 NW_004955567 1491834 1498408 + 102011818 AGCD01074476;GBDK01309694;XR_001232411;XR_001232412 MODEL 8845286 protein-coding LOC102023269 calmodulin-like protein 3 ASSOCIATED WITH hepatocellular carcinoma (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog); Lung Neoplasms (ortholog) NW_004955421 22205476 22219715 + 102023269 AGCD01022128;GBDI01217492;XM_013513788;XM_013513789;XR_001233870;XR_001233871;XR_001233872;XR_001233873;XR_001233874 XP_013369242;XP_013369243 MODEL 8886297 ncrna LOC102005400 uncharacterized LOC102005400 NW_004955507 3809575 3820981 - 102005400 AGCD01065638;GBDF01158104;XR_001231636 MODEL 8907285 protein-coding Eme2 essential meiotic structure-specific endonuclease subunit 2 ENCODES a protein that exhibits double-stranded DNA endonuclease activity (ortholog); INVOLVED IN double-strand break repair (ortholog); replication fork processing (ortholog); resolution of mitotic recombination intermediates (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 32 (ortholog); developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); FOUND IN endodeoxyribonuclease complex (ortholog); nuclear chromosome (ortholog) NW_004955442 15492925 15496639 - 102020060 AGCD01037875;GBBH01185829;XM_005391517 XP_005391574 MODEL 9038442 protein-coding Tpcn1 two pore segment channel 1 ENCODES a protein that exhibits identical protein binding (ortholog); intracellularly phosphatidylinositol-3,5-bisphosphate-gated monatomic cation channel activity (ortholog); ligand-gated sodium channel activity (ortholog); INVOLVED IN endocytosis involved in viral entry into host cell (ortholog); positive regulation of autophagy (ortholog); sodium ion transmembrane transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH oligospermia (ortholog); FOUND IN early endosome membrane (ortholog); endolysosome (ortholog); endosome membrane (ortholog) NW_004955482 9538572 9594739 + 102015201 AGCD01057574;GBBH01119361;XM_005403217;XM_005403218;XM_005403219;XM_005403220;XM_005403221;XM_005403222 XP_005403274;XP_005403275;XP_005403276;XP_005403277;XP_005403278;XP_005403279 MODEL 39132533 snorna SNORD14 Small nucleolar RNA SNORD14 8780160 protein-coding Slc25a29 solute carrier family 25 member 29 ENCODES a protein that exhibits basic amino acid transmembrane transporter activity (ortholog); high-affinity L-arginine transmembrane transporter activity (ortholog); high-affinity lysine transmembrane transporter activity (ortholog); INVOLVED IN carnitine transport (ortholog); L-arginine transmembrane transport (ortholog); L-histidine transmembrane transport (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955438 21383805 21393897 - 102018028 AGCD01035539;AGCD01035540;AGCD01035541;GBDF01015561;GBDI01129385;XM_013517271 XP_013372725 MODEL 8964666 pseudo LOC102006483 uncharacterized LOC102006483 NW_004955503 49005 53085 - 102006483 AGCD01064480 MODEL 8952713 protein-coding Paqr8 progestin and adipoQ receptor family member 8 FOUND IN Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955411 5691228 5743438 - 102012939 AGCD01011656;AGCD01011657;AGCD01011658;AGCD01011659;AGCD01011660;AGCD01011661;GBDF01191918;XM_005377925 XP_005377982 MODEL 8714545 pseudo LOC102008336 60S ribosomal protein L13 pseudogene NW_004955508 1222169 1222822 + 102008336 AGCD01065759 MODEL 8870400 pseudo LOC102011391 dnaJ homolog subfamily B member 6-like NW_004955451 11366508 11386075 + 102011391 AGCD01043350;AGCD01043351;AGCD01043352 MODEL 8996401 protein-coding LOC102009461 immunoglobulin omega chain-like NW_004955455 6648451 6649016 + 102009461 AGCD01045803;XM_005396575 XP_005396632 MODEL 8986635 protein-coding Ptpn9 protein tyrosine phosphatase non-receptor type 9 ENCODES a protein that exhibits protein tyrosine phosphatase activity (ortholog); INVOLVED IN negative regulation of neuron projection development (ortholog); peptidyl-tyrosine dephosphorylation (ortholog); positive regulation of protein localization to plasma membrane (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); chromosome 15q24 deletion syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); neuron projection terminus (ortholog) NW_004955450 2725755 2796390 + 102027249 AGCD01042400;AGCD01042401;AGCD01042402;AGCD01042403;AGCD01042404;AGCD01042405;AGCD01042406;AGCD01042407;GBCB01073974;GBDF01189354;XM_005393506 XP_005393563 MODEL 8993276 protein-coding Pknox1 PBX/knotted 1 homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN angiogenesis (ortholog); camera-type eye development (ortholog); erythrocyte differentiation (ortholog); ASSOCIATED WITH cataract 9 multiple types (ortholog); developmental and epileptic encephalopathy 30 (ortholog); homocystinuria (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955407 38949060 38982984 - 102006875 AGCD01007815;AGCD01007816;GBCE01008569;XM_005375800;XM_005375801;XM_005375802 XP_005375857;XP_005375858;XP_005375859 MODEL 8880582 protein-coding LOC102008337 olfactory receptor 1030 NW_004955511 1667797 1668753 - 102008337 AGCD01066377;XM_005407970 XP_005408027 MODEL 8869786 pseudo LOC102018632 protein SET-like NW_004955432 3642624 3644695 + 102018632 AGCD01030672 MODEL 8988791 protein-coding Wdhd1 WD repeat and HMG-box DNA binding protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); RNA binding (ortholog); RNA polymerase binding (ortholog); INVOLVED IN pericentric heterochromatin organization (ortholog); regulation of chromosome organization (ortholog); RNA processing (ortholog); ASSOCIATED WITH cholangiocarcinoma (ortholog); FOUND IN chromosome, centromeric region (ortholog); nucleoplasm (ortholog) NW_004955409 8539617 8587537 + 102028723 AGCD01009420;GBDF01249434;XM_005376757;XM_005376758 XP_005376814;XP_005376815 MODEL 10150979 ncrna LOC106149835 uncharacterized LOC106149835 NW_004955454 7002652 7012998 + 106149835 AGCD01045275;GBDJ01397240;XR_001236264 MODEL 8918424 protein-coding Rarg retinoic acid receptor gamma ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); apoptotic process (ortholog); bone development (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH Cardiotoxicity (ortholog); cleft palate (ortholog); heart disease (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955458 480257 501172 - 102016349 AGCD01047129;AGCD01047130;GBCC01032927;XM_013520911;XM_013520912;XM_013520913;XM_013520914 XP_013376365;XP_013376366;XP_013376367;XP_013376368 MODEL 8739944 protein-coding Prmt3 protein arginine methyltransferase 3 ENCODES a protein that exhibits histone H4R3 methyltransferase activity (ortholog); methyltransferase activity (ortholog); modified amino acid binding (ortholog); INVOLVED IN dendritic spine morphogenesis (ortholog); negative regulation of protein ubiquitination (ortholog); negative regulation of retinoic acid biosynthetic process (ortholog); PARTICIPATES IN histidine metabolic pathway; histidinemia pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH asthma (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955476 1222579 1331582 + 102006767 AGCD01055203;AGCD01055204;GBBH01149628;GBDJ01388986;XM_005401723 XP_005401780 MODEL 8965695 protein-coding Rab30 RAB30, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); INVOLVED IN Golgi organization (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); intellectual disability (ortholog); FOUND IN autolysosome membrane (ortholog); autophagosome membrane (ortholog); cis-Golgi network (ortholog) NW_004955414 9497276 9582747 + 102028176 AGCD01015027;AGCD01015028;GBCE01114038;XM_005379804;XM_005379805;XM_005379807;XM_013512054 XP_005379861;XP_005379862;XP_005379864;XP_013367508 MODEL 8873342 protein-coding Trpm2 transient receptor potential cation channel subfamily M member 2 ENCODES a protein that exhibits ADP-ribose diphosphatase activity (ortholog); calcium ion binding (ortholog); hydrolase activity (ortholog); INVOLVED IN calcium ion import across plasma membrane (ortholog); calcium ion transmembrane import into cytosol (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autoimmune polyendocrine syndrome type 1 (ortholog); bipolar disorder (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); lysosomal membrane (ortholog); lysosome (ortholog) NW_004955407 41062217 41110500 - 102025656 AGCD01007854;AGCD01007855;GBBH01060494;GBBH01060499;XM_005375860;XM_005375861;XM_013505319;XM_013505324;XM_013505330;XM_013505335 XP_005375917;XP_005375918;XP_013360773;XP_013360778;XP_013360784;XP_013360789 MODEL 9029748 protein-coding Rheb Ras homolog, mTORC1 binding ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); negative regulation of cold-induced thermogenesis (ortholog); oligodendrocyte differentiation (ortholog); PARTICIPATES IN mTOR signaling pathway; Rheb mediated signaling pathway; ASSOCIATED WITH epilepsy (ortholog); Hemimegalencephaly (ortholog); lethal congenital glycogen storage disease of heart (ortholog); FOUND IN dendrite (ortholog); endomembrane system (ortholog); glutamatergic synapse (ortholog) NW_004955491 5795040 5833897 - 102003454 AGCD01060503;AGCD01060504;AGCD01060505;GBBH01062052;XM_013504611 XP_013360065 MODEL 9006514 ncrna LOC102017469 uncharacterized LOC102017469 NW_004955423 5629973 5705628 + 102017469 AGCD01023565;AGCD01023566;GBDF01221637;XR_260957 MODEL 39132546 snorna SNORD14 Small nucleolar RNA SNORD14 8788402 protein-coding LOC102010238 olfactory receptor 151 NW_004955412 25594862 25595791 + 102010238 AGCD01013161;XM_005378427 XP_005378484 MODEL 8788954 protein-coding Polr3gl RNA polymerase III subunit GL ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH cataract 46 juvenile-onset (ortholog); Dwarfism (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN nucleus (ortholog); RNA polymerase III complex (ortholog) NW_004955568 120475 129990 - 102030133 AGCD01074503;GBDJ01234667;XM_005413422;XM_005413423;XM_013509352;XM_013509353 XP_005413479;XP_005413480;XP_013364806;XP_013364807 MODEL 8835092 protein-coding Slc25a3 solute carrier family 25 member 3 ENCODES a protein that exhibits protein-containing complex binding (ortholog); ASSOCIATED WITH Mitochondrial Phosphate Carrier Deficiency (ortholog); FOUND IN mitochondrion (ortholog) NW_004955405 34584676 34591470 + 102030035 AGCD01005379;AGCD01005380;GBBH01000009;GBDJ01019336;XM_013518582;XM_013518583 XP_013374036;XP_013374037 MODEL 9052608 protein-coding Lgr4 leucine rich repeat containing G protein-coupled receptor 4 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN bone mineralization (ortholog); bone remodeling (ortholog); circadian regulation of gene expression (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH glaucoma (ortholog); intellectual disability (ortholog); Self-Limited Delayed Puberty (ortholog); FOUND IN plasma membrane (ortholog) NW_004955476 6611102 6629294 - 102008406 AGCD01055337;GBBH01165625;GBCB01059985;XM_013502964 XP_013358418 MODEL 8870238 protein-coding Src SRC proto-oncogene, non-receptor tyrosine kinase ENCODES a protein that exhibits BMP receptor binding (ortholog); cell adhesion molecule binding (ortholog); connexin binding (ortholog); INVOLVED IN positive regulation of outer hair cell apoptotic process; adherens junction organization (ortholog); angiotensin-activated signaling pathway (ortholog); PARTICIPATES IN altered Reelin signaling pathway; dopamine signaling pathway; E-cadherin signaling pathway; ASSOCIATED WITH Hearing Loss, Noise-Induced; sensorineural hearing loss; Aicardi-Goutieres Syndrome 5 (ortholog); FOUND IN actin filament (ortholog); axon (ortholog); caveola (ortholog) NW_004955445 19213210 19227670 - 102006840 AGCD01039914;GBCB01079160;GBCE01077842;XM_013518348 XP_013373802 MODEL 8925499 ncrna LOC102011004 uncharacterized LOC102011004 NW_004955418 480761 481468 + 102011004 AGCD01018677;GBDK01046238;XR_260530 MODEL 8906564 protein-coding Snx15 sorting nexin 15 ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); nucleolus (ortholog) NW_004955422 20149570 20158076 - 102020021 AGCD01023068;GBDF01047995;XM_005384526 XP_005384583 MODEL 9025322 protein-coding Rhebl1 RHEB like 1 ENCODES a protein that exhibits GTP binding (ortholog); INVOLVED IN positive regulation of NF-kappaB transcription factor activity (ortholog); TOR signaling (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Kabuki syndrome (ortholog); FOUND IN cytoplasm (ortholog) NW_004955500 7894686 7898035 - 102014584 AGCD01063955;GBDF01077128;XM_005406691 XP_005406748 MODEL 39133324 snrna U4 U4 spliceosomal RNA 8978026 protein-coding Nccrp1 NCCRP1, F-box associated domain containing INVOLVED IN positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH maturity-onset diabetes of the young type 1 (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955468 353066 356650 - 102026735 AGCD01051693;GBDK01195401;XM_005399790 XP_005399847 MODEL 8706553 protein-coding Tial1 TIA1 cytotoxic granule associated RNA binding protein like 1 ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); mRNA 3'-UTR binding (ortholog); protein-RNA adaptor activity (ortholog); INVOLVED IN germ cell development (ortholog); negative regulation of cell population proliferation (ortholog); positive regulation of hippo signaling (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Disease Progression (ortholog); Experimental Liver Cirrhosis (ortholog); malignant astrocytoma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955551 370792 395836 - 102010637 AGCD01072655;GBCQ01042559;XM_005412159;XM_005412160;XM_013508586;XM_013508587 XP_005412216;XP_005412217;XP_013364040;XP_013364041 MODEL 10103896 protein-coding LOC106147008 translation initiation factor IF-2-like NW_004955511 6167882 6177497 - 106147008 AGCD01066598;XM_013506471 XP_013361925 MODEL 8973471 protein-coding LOC102021547 olfactory receptor 52K1-like NW_004955414 20116732 20117685 + 102021547 AGCD01015358;XM_005380464 XP_005380521 MODEL 9017252 protein-coding Ptpra protein tyrosine phosphatase receptor type A ENCODES a protein that exhibits protein tyrosine phosphatase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN insulin receptor signaling pathway (ortholog); integrin-mediated signaling pathway (ortholog); modulation of chemical synaptic transmission (ortholog); PARTICIPATES IN insulin signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); dystonia 30 (ortholog); gastric adenocarcinoma (ortholog); FOUND IN focal adhesion (ortholog); membrane (ortholog); receptor complex (ortholog) NW_004955415 13819934 13967068 + 102020110 AGCD01016269;AGCD01016270;AGCD01016271;AGCD01016272;AGCD01016273;AGCD01016274;AGCD01016275;AGCD01016276;AGCD01016277;AGCD01016278;GBCE01032562;XM_005380770;XM_005380771;XM_013512312;XM_013512313 XP_005380827;XP_005380828;XP_013367766;XP_013367767 MODEL 8725587 protein-coding Brme1 break repair meiotic recombinase recruitment factor 1 ENCODES a protein that exhibits damaged DNA binding (ortholog); INVOLVED IN double-strand break repair involved in meiotic recombination (ortholog); female meiosis I (ortholog); male meiosis I (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive intellectual developmental disorder 3 (ortholog); intellectual disability (ortholog); FOUND IN chromosome (ortholog); site of double-strand break (ortholog) NW_004955415 32652978 32667873 - 102015838 AGCD01016730;GBBH01138965;XM_013512198;XM_013512199;XM_013512200;XM_013512201;XM_013512202;XM_013512203;XM_013512204;XM_013512205;XM_013512206;XM_013512207 XP_013367652;XP_013367653;XP_013367654;XP_013367655;XP_013367656;XP_013367657;XP_013367658;XP_013367659;XP_013367660;XP_013367661 MODEL 9054942 protein-coding LOC102007956 chromosome unknown open reading frame, human C18orf21 ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog) NW_004955402 22573130 22580293 + 102007956 AGCD01000607;GBDF01158825;XM_005372803 XP_005372860 MODEL 8737693 protein-coding Pknox2 PBX/knotted 1 homeobox 2 ENCODES a protein that exhibits actin filament binding (ortholog); actin monomer binding (ortholog); DNA binding (ortholog); INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); intercellular bridge (ortholog) NW_004955412 26214671 26468737 + 102019898 AGCD01013185;AGCD01013186;AGCD01013187;AGCD01013188;AGCD01013189;AGCD01013190;GBCE01069857;XM_005378457;XM_005378458;XM_013511208;XM_013511209 XP_005378514;XP_005378515;XP_013366662;XP_013366663 MODEL 8825357 protein-coding LOC102005403 olfactory receptor 8J3-like NW_004955511 1471770 1480062 + 102005403 AGCD01066369;XM_005407962 XP_005408019 MODEL 8990973 ncrna LOC102015566 uncharacterized LOC102015566 NW_004955534 1023182 1115440 - 102015566 AGCD01070483;AGCD01070484;AGCD01070485;AGCD01070486;AGCD01070487;GBBH01146790;XR_001232056 MODEL 8991410 pseudo LOC102003668 uncharacterized LOC102003668 NW_004955423 22908358 22973034 - 102003668 AGCD01023981;AGCD01023982;AGCD01023983;AGCD01023984;AGCD01023985;AGCD01023986 MODEL 8733858 protein-coding LOC102018994 uncharacterized LOC102018994 NW_004955555 1543178 1564850 + 102018994 AGCD01073087;AGCD01073088;AGCD01073089;AGCD01073090;GBBH01204503;XM_013508744;XR_001232305;XR_001232306;XR_001232307;XR_001232308 XP_013364198 MODEL 8704512 protein-coding Ncdn neurochondrin INVOLVED IN bone resorption (ortholog); neuron projection development (ortholog); regulation of neuronal synaptic plasticity (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); Floating-Harbor syndrome (ortholog); NEURODEVELOPMENTAL DISORDER WITH INFANTILE EPILEPTIC SPASMS (ortholog); FOUND IN axon (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955452 13650016 13659382 + 102019768 AGCD01044429;GBDF01120972;XM_005395148;XM_005395149;XM_005395150;XM_005395151;XM_013519573 XP_005395205;XP_005395206;XP_005395207;XP_005395208;XP_013375027 MODEL 8772552 ncrna LOC102006486 uncharacterized LOC102006486 NW_004955429 12941851 12943908 - 102006486 AGCD01028733;GBDI01366543;XR_261327 MODEL 8975578 protein-coding Trim66 tripartite motif containing 66 ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); FOUND IN chromocenter (ortholog); nucleus (ortholog) NW_004955414 24405986 24459729 - 102019264 AGCD01015545;AGCD01015546;GBDF01083727;XM_005380224;XM_013511881;XM_013511883;XM_013511884;XM_013511885;XM_013511886 XP_005380281;XP_013367335;XP_013367337;XP_013367338;XP_013367339;XP_013367340 MODEL 8760289 protein-coding Pet100 PET100 homolog ASSOCIATED WITH Congenital Infantile Lactic Acidosis (ortholog); cytochrome-c oxidase deficiency disease (ortholog); familial hemophagocytic lymphohistiocytosis 5 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955563 1628746 1630307 - 102029237 AGCD01074153;GBDF01043194;XM_005413177 XP_005413234 MODEL 8913414 protein-coding Pls1 plastin 1 INVOLVED IN auditory receptor cell stereocilium organization (ortholog); intestinal D-glucose absorption (ortholog); microvillus assembly (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 76 (ortholog); genetic disease (ortholog); FOUND IN brush border (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955508 3215304 3324240 - 102012672 AGCD01065806;GBDI01000738;XM_005407737;XM_013506262 XP_005407794;XP_013361716 MODEL 9018760 protein-coding Pkp1 plakophilin 1 ENCODES a protein that exhibits DNA binding (ortholog); lamin binding (ortholog); INVOLVED IN ameloblast differentiation (ortholog); desmosome assembly (ortholog); desmosome maintenance (ortholog); ASSOCIATED WITH ectodermal dysplasia (ortholog); Ectodermal Dysplasia-Skin Fragility Syndrome (ortholog); familial adult myoclonic epilepsy 5 (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); desmosome (ortholog) NW_004955406 37420019 37465588 + 102012608 AGCD01006576;GBBH01066844;XM_005375169 XP_005375226 MODEL 9032378 protein-coding Otub2 OTU deubiquitinase, ubiquitin aldehyde binding 2 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN protein deubiquitination (ortholog); protein K11-linked deubiquitination (ortholog); protein K48-linked deubiquitination (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); DICER1 syndrome (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955438 16079859 16096686 + 102011148 AGCD01035395;GBDF01045970;XM_005390363;XM_005390364 XP_005390420;XP_005390421 MODEL 39133368 snorna SNORD15 Small nucleolar RNA SNORD15 8744465 ncrna LOC102018998 uncharacterized LOC102018998 NW_004955578 1037639 1043605 + 102018998 AGCD01075507;AGCD01075508;GBDF01176403;XR_265087 MODEL 8983394 protein-coding Pcyt2 phosphate cytidylyltransferase 2, ethanolamine ENCODES a protein that exhibits ethanolamine-phosphate cytidylyltransferase activity (ortholog); INVOLVED IN phosphatidylethanolamine biosynthetic process (ortholog); PARTICIPATES IN lamivudine pharmacokinetics pathway; ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 82 (ortholog) NW_004955506 1258993 1266108 + 102024143 AGCD01065252;GBDK01076935;XM_005407247;XM_013506061 XP_005407304;XP_013361515 MODEL 9055027 pseudo LOC102011820 kelch repeat and BTB domain-containing protein 2 pseudogene NW_004955446 5926616 5937581 - 102011820 AGCD01040081 MODEL 8945647 protein-coding LOC102008338 olfactory receptor 5W2-like NW_004955511 810336 811271 + 102008338 AGCD01066344;XM_005408211 XP_005408268 MODEL 9011212 protein-coding Serbp1 SERPINE1 mRNA binding protein 1 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); ribosome binding (ortholog); RNA binding (ortholog); INVOLVED IN negative regulation of translation (ortholog); PML body organization (ortholog); regulation of apoptotic process (ortholog); ASSOCIATED WITH Disease Progression (ortholog); intellectual disability (ortholog); Stomach Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955423 23763356 23774816 + 102015645 AGCD01024017;GBBH01001652;GBCE01000542;XM_005385275;XM_013514510;XM_013514511;XM_013514512 XP_005385332;XP_013369964;XP_013369965;XP_013369966 MODEL 8726975 protein-coding LOC102023270 fibrillin-3-like NW_004955489 7357305 7439090 - 102023270 AGCD01059983;GBDF01188439;GBDK01150101;XM_013504457 XP_013359911 MODEL 9043841 ncrna LOC102012598 uncharacterized LOC102012598 NW_004955403 57139269 57141788 + 102012598 AGCD01003149;GBBH01126380;XR_001234448;XR_259277;XR_259278 MODEL 8824914 protein-coding Slx1a SLX1 homolog A, structure-specific endonuclease subunit ENCODES a protein that exhibits 5'-flap endonuclease activity (ortholog); crossover junction DNA endonuclease activity (ortholog); INVOLVED IN DNA double-strand break processing involved in repair via single-strand annealing (ortholog); DNA repair (ortholog); double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN nucleoplasm (ortholog); Slx1-Slx4 complex (ortholog) NW_004955493 6797913 6800555 - 102019283 AGCD01061140;AGCD01061141;GBBH01164343;GBDF01119426;XM_013504818 XP_013360272 MODEL 8820311 ncrna LOC102008342 uncharacterized LOC102008342 NW_004955432 20887908 20912192 - 102008342 AGCD01031210;GBDF01207508;XR_261537 MODEL 8897080 pseudo LOC102006832 uridine-cytidine kinase 2 pseudogene NW_004955444 56524 61263 - 102006832 AGCD01038648 MODEL 8993252 protein-coding LOC102005404 olfactory receptor 5L1-like NW_004955511 647139 648068 + 102005404 AGCD01066337;XM_005408203 XP_005408260 MODEL 8724722 ncrna LOC102011392 uncharacterized LOC102011392 NW_004955404 682584 698750 + 102011392 AGCD01003207;XR_259283 MODEL 8958963 protein-coding Ptprb protein tyrosine phosphatase receptor type B ENCODES a protein that exhibits cadherin binding (ortholog); INVOLVED IN angiogenesis (ortholog); dephosphorylation (ortholog); glial cell migration (ortholog); ASSOCIATED WITH angiosarcoma (ortholog); brain glioma (ortholog); breast angiosarcoma (ortholog); FOUND IN receptor complex (ortholog) NW_004955405 10647777 10766909 - 102028492 AGCD01004816;AGCD01004817;AGCD01004818;AGCD01004819;AGCD01004820;AGCD01004821;AGCD01004822;GBDK01004065;XM_005374311;XM_005374312 XP_005374368;XP_005374369 MODEL 8733046 protein-coding Rcn3 reticulocalbin 3 ENCODES a protein that exhibits calcium ion binding (ortholog); INVOLVED IN collagen biosynthetic process (ortholog); ERAD pathway (ortholog); lung epithelium development (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); osteoarthritis (ortholog); FOUND IN endoplasmic reticulum (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955559 1309621 1319925 - 102012810 AGCD01073640;GBCQ01100573;XM_005412867;XM_013509004;XM_013509005;XM_013509006 XP_005412924;XP_013364458;XP_013364459;XP_013364460 MODEL 9027773 protein-coding Slc41a2 solute carrier family 41 member 2 ENCODES a protein that exhibits inorganic cation transmembrane transporter activity (ortholog); INVOLVED IN cobalt ion transport (ortholog); iron ion transport (ortholog); magnesium ion transport (ortholog); FOUND IN plasma membrane (ortholog) NW_004955405 39181396 39280789 - 102014318 AGCD01005496;AGCD01005497;AGCD01005498;GBDF01082692;XM_005374599;XM_005374600;XM_005374601;XM_005374602;XM_005374603;XM_013518965 XP_005374656;XP_005374657;XP_005374658;XP_005374659;XP_005374660;XP_013374419 MODEL 8860960 protein-coding Polr3h RNA polymerase III subunit H ENCODES a protein that exhibits DNA-directed RNA polymerase activity (ortholog); INVOLVED IN nucleobase-containing compound metabolic process (ortholog); transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); fundus dystrophy (ortholog); FOUND IN centrosome (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955413 27065785 27072432 - 102018585 AGCD01014491;GBDF01289959;XM_005379351;XM_013511356;XM_013511357 XP_005379408;XP_013366810;XP_013366811 MODEL 8817993 ncrna LOC102011396 uncharacterized LOC102011396 NW_004955405 4622780 4660674 - 102011396 AGCD01004650;GBDF01088044;XR_001235203;XR_001235204 MODEL 8984583 protein-coding Trim67 tripartite motif containing 67 INVOLVED IN negative regulation of Ras protein signal transduction (ortholog); positive regulation of neuron projection development (ortholog); positive regulation of ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); congenital disorder of glycosylation type IIq (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (ortholog) NW_004955492 7538492 7578257 - 102009850 AGCD01060800;GBDI01166263;XM_005404980;XM_005404981;XM_013504687;XM_013504688 XP_005405037;XP_005405038;XP_013360141;XP_013360142 MODEL 9005705 protein-coding Lgr5 leucine rich repeat containing G protein-coupled receptor 5 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN epithelial cell proliferation involved in renal tubule morphogenesis (ortholog); hair follicle development (ortholog); inner ear development (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH ankyloglossia (ortholog); basal cell carcinoma (ortholog); Colonic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog); trans-Golgi network membrane (ortholog) NW_004955405 11507083 11574504 + 102018887 AGCD01004834;AGCD01004835;GBBH01016179;XM_005374681 XP_005374738 MODEL 8764323 protein-coding Emg1 EMG1 N1-specific pseudouridine methyltransferase ENCODES a protein that exhibits identical protein binding (ortholog); rRNA (pseudouridine) methyltransferase activity (ortholog); INVOLVED IN blastocyst development (ortholog); nucleologenesis (ortholog); ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH Bowen-Conradi syndrome (ortholog); developmental and epileptic encephalopathy 21 (ortholog); genetic disease (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955413 4563864 4570809 + 102010240 AGCD01013621;GBDJ01228048;XM_005378851 XP_005378908 MODEL 8807614 protein-coding Srcap Snf2 related CREBBP activator protein PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); adenoid cystic carcinoma (ortholog); autism spectrum disorder (ortholog); FOUND IN Golgi apparatus (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955493 7554724 7602560 + 102019075 AGCD01061202;AGCD01061203;AGCD01061204;AGCD01061205;GBDI01117388;XM_005405271;XM_005405272 XP_005405328;XP_005405329 MODEL 8865984 ncrna LOC102021550 uncharacterized LOC102021550 NW_004955415 14023924 14024705 + 102021550 AGCD01016284;GBDF01000432;XR_260290 MODEL 8994578 protein-coding Tpcn2 two pore segment channel 2 ENCODES a protein that exhibits calcium channel activity (ortholog); identical protein binding (ortholog); intracellularly phosphatidylinositol-3,5-bisphosphate-gated monatomic cation channel activity (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); endocytosis involved in viral entry into host cell (ortholog); endosome to lysosome transport of low-density lipoprotein particle (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); brain infarction (ortholog); immunodeficiency 90 (ortholog); FOUND IN endolysosome membrane (ortholog); endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955422 16899730 16923962 - 102026124 AGCD01022904;GBDI01264096;XM_005384252;XM_013514134;XM_013514135;XM_013514136 XP_005384309;XP_013369588;XP_013369589;XP_013369590 MODEL 39131574 protein-coding PAQR8 progestin and adipoQ receptor family member 8 8922016 protein-coding Rsl1d1 ribosomal L1 domain containing 1 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); INVOLVED IN regulation of apoptotic process (ortholog); regulation of cellular senescence (ortholog); regulation of protein localization (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN chromosome (ortholog); cilium (ortholog); cytosol (ortholog) NW_004955442 6749038 6764461 + 102025293 AGCD01037596;GBDF01080304;XM_005391158 XP_005391215 MODEL 8795932 protein-coding Rarres1 retinoic acid receptor responder 1 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); follicular lymphoma (ortholog); Stomach Neoplasms (ortholog) NW_004955448 9437365 9466565 - 102027799 AGCD01041474;GBDJ01011329;XM_005393105;XM_005393106;XM_013518647;XM_013518648 XP_005393162;XP_005393163;XP_013374101;XP_013374102 MODEL 8831395 protein-coding Tiam1 TIAM Rac1 associated GEF 1 ENCODES a protein that exhibits ephrin receptor binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); kinase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); brain-derived neurotrophic factor receptor signaling pathway (ortholog); cardiac muscle hypertrophy (ortholog); PARTICIPATES IN brain-derived neurotrophic factor signaling pathway; E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); Familial Platelet Disorder with Associated Myeloid Malignancy (ortholog); FOUND IN axonal growth cone (ortholog); cell-cell contact zone (ortholog); cell-cell junction (ortholog) NW_004955407 30804769 31178420 - 102012732 AGCD01007639;AGCD01007640;AGCD01007641;AGCD01007642;GBDF01087706;XM_005375657;XM_005375658;XM_005375660;XM_013504080;XM_013504086;XM_013504090 XP_005375714;XP_005375715;XP_005375717;XP_013359534;XP_013359540;XP_013359544 MODEL 8985441 protein-coding LOC102012606 dual specificity protein phosphatase 18-like NW_004955453 12279178 12280813 + 102012606 AGCD01044830;XM_013519757 XP_013375211 MODEL 8875498 pseudo LOC102010575 60S ribosomal protein L19 pseudogene NW_004955414 19517744 19518919 - 102010575 AGCD01015321 MODEL 8884513 protein-coding Pskh2 protein serine kinase H2 NW_004955417 3750965 3765326 - 102009837 AGCD01017925;XM_013512698 XP_013368152 MODEL 9036153 protein-coding Brms1 BRMS1 transcriptional repressor and anoikis regulator ENCODES a protein that exhibits NF-kappaB binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of NF-kappaB transcription factor activity (ortholog); positive regulation of anoikis (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955422 18981984 18989730 + 102014370 AGCD01022970;GBDJ01187942;XM_005384413;XM_005384415;XM_005384417;XM_013514159 XP_005384470;XP_005384472;XP_005384474;XP_013369613 MODEL 8762230 pseudo LOC102015568 PHD finger-like domain-containing protein 5A pseudogene NW_004955437 21029054 21029994 - 102015568 AGCD01034895 MODEL 8990010 protein-coding Phykpl 5-phosphohydroxy-L-lysine phospho-lyase ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Phosphohydroxylysinuria (ortholog); Sotos syndrome (ortholog) NW_004955408 2038168 2062681 + 102012065 AGCD01007986;GBBH01041369;GBDK01019520;XM_013508019;XM_013508024;XM_013508035;XR_001232156 XP_013363473;XP_013363478;XP_013363489 MODEL 9008276 ncrna LOC102024265 uncharacterized LOC102024265 NW_004955512 989850 1004243 - 102024265 AGCD01066628;XR_264441 MODEL 8942983 pseudo LOC102010239 mortality factor 4-like protein 1 pseudogene NW_004955412 28163408 28164375 + 102010239 AGCD01013249 MODEL 9053529 protein-coding Slc25a30 solute carrier family 25 member 30 ENCODES a protein that exhibits solute:inorganic anion antiporter activity (ortholog); INVOLVED IN inorganic anion transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN mitochondrion (ortholog) NW_004955518 3182085 3203061 + 102014937 AGCD01067795;GBCQ01178160;XM_005409085 XP_005409142 MODEL 10308971 ncrna LOC106149836 uncharacterized LOC106149836 NW_004955455 6304576 6306816 - 106149836 AGCD01045785;GBDI01166479;XR_001236267 MODEL 8912805 ncrna LOC102011005 uncharacterized LOC102011005 NW_004955418 27966614 27993848 - 102011005 AGCD01019421;AGCD01019422;GBDF01041994;XR_260587;XR_260588 MODEL 10266419 ncrna LOC106147009 uncharacterized LOC106147009 NW_004955511 6160146 6163938 - 106147009 AGCD01066598;GBBH01213649;XR_001231704 MODEL 8716338 protein-coding Slc41a3 solute carrier family 41 member 3 ENCODES a protein that exhibits magnesium:sodium antiporter activity (ortholog); INVOLVED IN mitochondrial magnesium ion transmembrane transport (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN mitochondrial inner membrane (ortholog); plasma membrane (ortholog) NW_004955421 21349484 21407171 - 102017779 AGCD01022107;AGCD01022108;GBCQ01151305;XM_005383826;XM_005383827;XM_005383828;XM_005383829;XM_013513732 XP_005383883;XP_005383884;XP_005383885;XP_005383886;XP_013369186 MODEL 8975436 protein-coding Polr3k RNA polymerase III subunit K ENCODES a protein that exhibits zinc ion binding (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH Disease Progression (ortholog); familial focal epilepsy with variable foci 3 (ortholog); hypomyelinating leukodystrophy 21 (ortholog); FOUND IN RNA polymerase III complex (ortholog) NW_004955442 17101585 17106689 + 102010204 AGCD01037937;GBDI01260720;XM_005391684 XP_005391741 MODEL 10197941 ncrna LOC106149837 uncharacterized LOC106149837 NW_004955455 15137015 15154580 - 106149837 AGCD01046099;GBDF01059392;XR_001236272 MODEL 8792298 ncrna LOC102003669 uncharacterized LOC102003669 NW_004955497 6927114 6931241 + 102003669 AGCD01062651;GBDF01281346;XR_264207;XR_264208 MODEL 8818602 protein-coding Paqr9 progestin and adipoQ receptor family member 9 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955508 2971419 2975165 + 102012011 AGCD01065802;AGCD01065803;GBBH01137192;XM_005407735 XP_005407792 MODEL 8861004 ncrna LOC102018635 uncharacterized LOC102018635 NW_004955433 21104127 21129938 + 102018635 AGCD01031916;GBDJ01222197;XR_261603 MODEL 8877243 protein-coding Pet117 PET117 homolog ASSOCIATED WITH congenital dyserythropoietic anemia type II (ortholog); familial hyperinsulinemic hypoglycemia 1 (ortholog); mitochondrial complex IV deficiency nuclear type 19 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955415 26868442 26871832 + 102013929 AGCD01016610;GBDF01144428;XM_005380920 XP_005380977 MODEL 8779187 protein-coding Otud1 OTU deubiquitinase 1 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN protein K63-linked deubiquitination (ortholog) NW_004955429 5588333 5590220 - 102010718 AGCD01028522;GBBH01140797;GBCE01053508;XM_005387230 XP_005387287 MODEL 8946074 protein-coding Pls3 plastin 3 ENCODES a protein that exhibits structural constituent of presynaptic actin cytoskeleton (ortholog); INVOLVED IN bone development (ortholog); inner ear auditory receptor cell differentiation (ortholog); regulation of synaptic vesicle cycle (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Anterior Diaphragmatic Hernia (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); neuromuscular junction (ortholog) NW_004955490 125913 221152 - 102024576 AGCD01060059;AGCD01060060;AGCD01060061;GBCE01031000;XM_005404619;XM_013504543 XP_005404676;XP_013359997 MODEL 8829266 protein-coding Snx16 sorting nexin 16 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN early endosome to late endosome transport (ortholog); endosome to lysosome transport (ortholog); protein targeting to lysosome (ortholog); FOUND IN early endosome (ortholog); endosome membrane (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955417 159369 209166 - 102025356 AGCD01017788;AGCD01017789;AGCD01017790;AGCD01017791;AGCD01017792;AGCD01017793;GBCB01086124;XM_005381722;XM_005381723 XP_005381779;XP_005381780 MODEL 9060585 protein-coding Ptprc protein tyrosine phosphatase receptor type C ENCODES a protein that exhibits ankyrin binding (ortholog); heparan sulfate proteoglycan binding (ortholog); heparin binding (ortholog); INVOLVED IN alpha-beta T cell proliferation (ortholog); B cell differentiation (ortholog); B cell proliferation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Gastro-Enteropancreatic Neuroendocrine Tumor (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN bleb (ortholog); cell periphery (ortholog); cell surface (ortholog) NW_004955406 35005577 35127395 + 102002992 AGCD01006516;AGCD01006517;GBDI01007524;XM_013521946;XM_013521949;XM_013521953;XM_013521962;XM_013521970;XM_013521971 XP_013377400;XP_013377403;XP_013377407;XP_013377416;XP_013377424;XP_013377425 MODEL 39133369 snorna SNORD15 Small nucleolar RNA SNORD15 9021221 protein-coding LOC102011821 putative olfactory receptor 2B8 NW_004955576 1362244 1363185 + 102011821 AGCD01075374;XM_005413954 XP_005414011 MODEL 8855409 protein-coding Wdpcp WD repeat containing planar cell polarity effector ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); INVOLVED IN auditory receptor cell morphogenesis (ortholog); camera-type eye development (ortholog); cilium assembly (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 1 (ortholog); Bardet-Biedl syndrome 15 (ortholog); FOUND IN axonemal basal plate (ortholog) NW_004955424 20723592 21114801 + 102012774 AGCD01024871;AGCD01024872;AGCD01024873;AGCD01024874;AGCD01024875;AGCD01024876;AGCD01024877;AGCD01024878;AGCD01024879;AGCD01024880;AGCD01024881;AGCD01024882;AGCD01024883;AGCD01024884;AGCD01024885;AGCD01024886;AGCD01024887;AGCD01024888;AGCD01024889;AGCD01024890;AGCD01024891;AGCD01024892;AGCD01024893;GBDF01160193;XM_005385716;XM_005385718;XM_005385719;XM_005385720;XM_013514679;XM_013514680;XM_013514681;XM_013514682;XM_013514683;XM_013514684;XM_013514685;XM_013514686 XP_005385773;XP_005385775;XP_005385776;XP_005385777;XP_013370133;XP_013370134;XP_013370135;XP_013370136;XP_013370137;XP_013370138;XP_013370139;XP_013370140 MODEL 8747882 protein-coding Trpm3 transient receptor potential cation channel subfamily M member 3 ENCODES a protein that exhibits calcium channel activity (ortholog); monoatomic cation channel activity (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); monoatomic cation transport (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); autosomal dominant intellectual developmental disorder (ortholog); Birk-Barel syndrome (ortholog); FOUND IN plasma membrane (ortholog) NW_004955434 2017809 2543827 + 102022219 AGCD01032082;AGCD01032083;AGCD01032084;AGCD01032085;AGCD01032086;AGCD01032087;AGCD01032088;AGCD01032089;AGCD01032090;AGCD01032091;AGCD01032092;AGCD01032093;AGCD01032094;AGCD01032095;AGCD01032096;AGCD01032097;GBDK01308805;XM_005388528;XM_005388530;XM_005388531;XM_005388535;XM_005388536;XM_005388541;XM_005388542;XM_005388548;XM_005388550;XM_005388552 XP_005388585;XP_005388587;XP_005388588;XP_005388592;XP_005388593;XP_005388598;XP_005388599;XP_005388605;XP_005388607;XP_005388609 MODEL 9022389 ncrna LOC102023271 uncharacterized LOC102023271 NW_004955491 4998172 5001404 - 102023271 AGCD01060466;GBDF01028093;XR_001231219 MODEL 8862373 protein-coding Otud3 OTU deubiquitinase 3 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); protein deubiquitination (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955452 488295 516162 + 102014636 AGCD01043813;AGCD01043814;AGCD01043815;GBDF01049000;XM_005394666 XP_005394723 MODEL 9028860 protein-coding Serf2 small EDRK-rich factor 2 INVOLVED IN protein destabilization (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955416 10251533 10252429 + 102012642 AGCD01017126;GBCB01007574;GBDF01001580;XM_005381409 XP_005381466 MODEL 8881492 protein-coding Slx4 SLX4 structure-specific endonuclease subunit ENCODES a protein that exhibits enzyme activator activity (ortholog); INVOLVED IN DNA double-strand break processing involved in repair via single-strand annealing (ortholog); DNA repair (ortholog); double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); epilepsy (ortholog); FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); ERCC4-ERCC1 complex (ortholog) NW_004955442 13765660 13792106 + 102020491 AGCD01037787;AGCD01037788;GBCB01011086;XM_005391326;XM_005391327;XM_005391328;XM_005391329;XM_005391330;XM_005391331 XP_005391383;XP_005391384;XP_005391385;XP_005391386;XP_005391387;XP_005391388 MODEL 8708859 protein-coding Emid1 EMI domain containing 1 ASSOCIATED WITH Breast Cancer, Familial (ortholog); vestibular schwannomatosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular matrix (ortholog); Golgi apparatus (ortholog) NW_004955455 3514350 3564584 + 102027713 AGCD01045632;AGCD01045633;AGCD01045634;AGCD01045635;AGCD01045636;GBBH01172676;GBDI01170247;XM_005396178;XM_005396179;XM_005396180;XM_005396181;XM_005396182;XM_005396188 XP_005396235;XP_005396236;XP_005396237;XP_005396238;XP_005396239;XP_005396245 MODEL 8810372 ncrna LOC102006489 uncharacterized LOC102006489 NW_004955432 19124642 19126210 + 102006489 AGCD01031169;GBDI01387174;XR_261535 MODEL 8765089 protein-coding Rhex regulator of hemoglobinization and erythroid cell expansion ENCODES a protein that exhibits erythropoietin receptor binding (ortholog); INVOLVED IN cellular response to erythropoietin (ortholog); erythropoietin-mediated signaling pathway (ortholog); positive regulation of erythrocyte differentiation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN plasma membrane (ortholog) NW_004955406 41687577 41703282 + 102016446 AGCD01006688;GBDK01309194;XM_005375383;XM_005375384;XM_013523064 XP_005375440;XP_005375441;XP_013378518 MODEL 39133325 snrna U4 U4 spliceosomal RNA 8891468 protein-coding Rsl24d1 ribosomal L24 domain containing 1 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955409 622561 632776 + 102011842 AGCD01009159;AGCD01009160;GBDI01018667;XM_005376610 XP_005376667 MODEL 8881787 protein-coding Nceh1 neutral cholesterol ester hydrolase 1 ENCODES a protein that exhibits phosphate ion binding (ortholog); serine hydrolase activity (ortholog); INVOLVED IN ether lipid metabolic process (ortholog); protein dephosphorylation (ortholog); xenobiotic metabolic process (ortholog); ASSOCIATED WITH disease of cellular proliferation (ortholog); Fanconi-Bickel syndrome (ortholog); FOUND IN membrane (ortholog) NW_004955420 2666905 2725814 - 102003242 AGCD01020605;AGCD01020606;AGCD01020607;GBCE01007233;XM_005383012;XM_013513556 XP_005383069;XP_013369010 MODEL 9023803 protein-coding Pkp2 plakophilin 2 ENCODES a protein that exhibits alpha-catenin binding (ortholog); DNA binding (ortholog); intermediate filament binding (ortholog); INVOLVED IN adherens junction maintenance (ortholog); bundle of His cell-Purkinje myocyte adhesion involved in cell communication (ortholog); cardiac muscle cell action potential (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); arrhythmogenic right ventricular dysplasia 1 (ortholog); arrhythmogenic right ventricular dysplasia 9 (ortholog); FOUND IN adherens junction (ortholog); cell junction (ortholog); cell-cell junction (ortholog) NW_004955505 2878001 2959299 + 102026770 AGCD01065008;AGCD01065009;GBBH01214867;GBDK01128347;XM_013505957 XP_013361411 MODEL 8870678 protein-coding Psma1 proteasome 20S subunit alpha 1 ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); INVOLVED IN negative regulation of inflammatory response to antigenic stimulus (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955414 29667417 29679510 - 102023463 AGCD01015711;GBCB01002979;XM_005380332 XP_005380389 MODEL 8813744 pseudo LOC102019003 rab11 family-interacting protein 2 pseudogene NW_004955589 742663 744819 - 102019003 AGCD01076181 MODEL 8877409 protein-coding Pi15 peptidase inhibitor 15 NW_004955444 5647862 5674470 - 102018536 AGCD01038837;GBDJ01187421;XM_005392074 XP_005392131 MODEL 41410898 snorna SNORA28 small nucleolar RNA, H/ACA box 28 9041705 ncrna LOC102010245 uncharacterized LOC102010245 NW_004955468 7542624 7555442 + 102010245 AGCD01052002;GBDF01145028;XR_263402 MODEL 39131570 protein-coding PAQR9 progestin and adipoQ receptor family member 9 9013243 pseudo LOC102007959 fatty acyl-CoA reductase 1-like NW_004955402 53525237 53526901 - 102007959 AGCD01001369 MODEL 8764093 protein-coding Prmt5 protein arginine methyltransferase 5 ENCODES a protein that exhibits chromatin binding (ortholog); E-box binding (ortholog); histone H2AR3 methyltransferase activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); circadian regulation of gene expression (ortholog); DNA-templated transcription termination (ortholog); PARTICIPATES IN histone modification pathway; homocysteine metabolic pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH asthma (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); diffuse large B-cell lymphoma (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955409 37369507 37378034 + 102028833 AGCD01010511;GBDF01049663;XM_005377107;XM_005377109;XM_005377110 XP_005377164;XP_005377166;XP_005377167 MODEL 8999932 protein-coding Trim69 tripartite motif containing 69 ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein localization to centrosome (ortholog); ASSOCIATED WITH AGAT deficiency (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nuclear speck (ortholog) NW_004955409 8376449 8394651 - 102024980 AGCD01009402;AGCD01009403;AGCD01009404;AGCD01009405;AGCD01009406;GBDF01053402;XM_005376746 XP_005376803 MODEL 9044095 pseudo LOC102021551 protein FAM156A/FAM156B-like NW_004955475 2559027 2559617 - 102021551 AGCD01054812 MODEL 9022016 ncrna LOC102011824 uncharacterized LOC102011824 NW_004955402 7083653 7093047 - 102011824 AGCD01000165;GBDF01118415;XR_259035 MODEL 9003407 protein-coding Rab31 RAB31, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); Golgi to plasma membrane protein transport (ortholog); Golgi vesicle transport (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); dystonia (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); early phagosome membrane (ortholog) NW_004955402 2354399 2446537 - 102022140 AGCD01000076;AGCD01000077;AGCD01000078;AGCD01000079;GBDF01081715;XM_005372596;XM_013515338 XP_005372653;XP_013370792 MODEL 8885428 protein-coding Lgr6 leucine rich repeat containing G protein-coupled receptor 6 INVOLVED IN bone regeneration (ortholog); cell population proliferation (ortholog); positive regulation of cell migration (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN vesicle (ortholog) NW_004955406 38274998 38381677 + 102005893 AGCD01006599;AGCD01006600;GBBH01110778;GBBH01131676;XM_013522356 XP_013377810 MODEL 8851962 pseudo LOC102017472 DCN1-like protein 4 pseudogene NW_004955495 2539564 2541310 + 102017472 AGCD01061781 MODEL 8938718 pseudo LOC102006833 sm-like protein LSM5 NW_004955563 332830 333970 + 102006833 AGCD01074061 MODEL 8706552 pseudo LOC102010577 fatty acid-binding protein, epidermal pseudogene NW_004955414 14243606 14244127 + 102010577 AGCD01015144 MODEL 10179795 protein-coding LOC106149838 immunoglobulin lambda-like polypeptide 1 NW_004955455 7363925 7371335 + 106149838 AGCD01045854;XM_013520312 XP_013375766 MODEL 9046892 protein-coding Rarres2 retinoic acid receptor responder 2 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); cellular response to insulin stimulus (ortholog); embryonic digestive tract development (ortholog); ASSOCIATED WITH essential hypertension (ortholog); glucose intolerance (ortholog); granulosa cell tumor (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular region (ortholog); extracellular space (ortholog) NW_004955491 4954809 4957724 - 102020453 AGCD01060465;GBDF01126597;XM_005404775;XM_005404776;XM_005404777;XM_005404778 XP_005404832;XP_005404833;XP_005404834;XP_005404835 MODEL 8833033 protein-coding LOC102012609 ras-related protein Rap-1A NW_004955407 658498 659795 + 102012609 AGCD01006756;XM_005375497 XP_005375554 MODEL 9067303 ncrna LOC102003670 uncharacterized LOC102003670 NW_004955424 25890232 25893041 - 102003670 AGCD01025056;GBDF01023092;XR_261109 MODEL 8820757 protein-coding Brms1l BRMS1 like transcriptional repressor ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog) NW_004955409 25286312 25319557 - 102027153 AGCD01010110;AGCD01010111;AGCD01010112;GBDI01025327;XM_005376913 XP_005376970 MODEL 8772274 pseudo LOC102011398 ubiquitin-conjugating enzyme E2 D2 pseudogene NW_004955406 14133361 14133789 - 102011398 AGCD01005958 MODEL 8700490 protein-coding Pdap1 PDGFA associated protein 1 ASSOCIATED WITH high grade glioma (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955460 15072667 15083329 - 102010133 AGCD01048768;GBBH01031562;XM_005397946 XP_005398003 MODEL 8978545 protein-coding Sergef secretion regulating guanine nucleotide exchange factor INVOLVED IN negative regulation of protein secretion (ortholog); ASSOCIATED WITH atherosclerosis (ortholog); intellectual disability (ortholog); progressive myoclonus epilepsy 7 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955414 32579419 32796714 - 102012528 AGCD01015782;AGCD01015783;GBCQ01059662;XM_005380391;XM_005380392;XR_001233167;XR_001233168;XR_001233169;XR_001233170;XR_260218;XR_260219;XR_260220;XR_260221 XP_005380448;XP_005380449 MODEL 8714229 pseudo LOC102018637 dnaJ homolog subfamily B member 11-like NW_004955524 100914 102457 - 102018637 AGCD01068664 MODEL 8751678 protein-coding Slc25a31 solute carrier family 25 member 31 INVOLVED IN male meiosis I (ortholog); regulation of mitochondrial membrane permeability (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH neuronal ceroid lipofuscinosis 7 (ortholog); FOUND IN membrane (ortholog); mitochondrial permeability transition pore complex (ortholog); mitochondrion (ortholog) NW_004955428 13648753 13667133 - 102007921 AGCD01027960;GBDF01052354;XM_005386748 XP_005386805 MODEL 8754963 protein-coding Ptprcap protein tyrosine phosphatase receptor type C associated protein ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); immunodeficiency 90 (ortholog); intellectual disability (ortholog); FOUND IN plasma membrane (ortholog) NW_004955422 18041094 18043687 + 102017463 AGCD01022936;GBDK01171715;XM_005384326 XP_005384383 MODEL 9051992 pseudo LOC102009463 cordon-bleu protein-like 1 NW_004955407 25359436 25360666 + 102009463 AGCD01007501 MODEL 8828788 protein-coding LOC102011006 olfactory receptor 2T11 NW_004955418 30157574 30163444 - 102011006 AGCD01019506;XM_005382367 XP_005382424 MODEL 8701060 pseudo LOC102011405 chromodomain Y-like protein pseudogene NW_004955407 28152182 28153855 - 102011405 AGCD01007576 MODEL 8823441 protein-coding Srcin1 SRC kinase signaling inhibitor 1 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein kinase binding (ortholog); INVOLVED IN behavioral response to cocaine (ortholog); negative regulation of cell adhesion (ortholog); negative regulation of protein secretion (ortholog); ASSOCIATED WITH Cocaine-Related Disorders (ortholog); FOUND IN actin cytoskeleton (ortholog); axon (ortholog); cytoplasm (ortholog) NW_004955451 13673613 13734639 - 102018149 AGCD01043497;AGCD01043498;AGCD01043499;AGCD01043500;GBBH01186980;GBDK01061796;XM_013519340;XM_013519341;XM_013519342;XM_013519343;XM_013519344;XM_013519345;XM_013519346;XM_013519347;XM_013519348;XM_013519349;XM_013519350;XM_013519351;XM_013519352;XM_013519353;XM_013519354;XM_013519355;XR_001235979 XP_013374794;XP_013374795;XP_013374796;XP_013374797;XP_013374798;XP_013374799;XP_013374800;XP_013374801;XP_013374802;XP_013374803;XP_013374804;XP_013374805;XP_013374806;XP_013374807;XP_013374808;XP_013374809 MODEL 9056595 protein-coding LOC102015573 transmembrane protease serine 9-like NW_004955559 316936 347247 + 102015573 AGCD01073574;AGCD01073575;AGCD01073576;AGCD01073577;AGCD01073578;XM_005412968 XP_005413025 MODEL 8913267 protein-coding LOC102005406 uncharacterized LOC102005406 NW_004955514 858595 900031 - 102005406 AGCD01067024;AGCD01067025;GBBH01100117;XM_013506745 XP_013362199 MODEL 8774746 protein-coding Polrmt RNA polymerase mitochondrial ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); DNA-directed RNA polymerase activity (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN mitochondrial transcription (ortholog); transcription initiation at mitochondrial promoter (ortholog); ASSOCIATED WITH Alpers-Huttenlocher syndrome (ortholog); cerebral creatine deficiency syndrome (ortholog); combined oxidative phosphorylation deficiency 55 (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955495 7111271 7124005 + 102022939 AGCD01062119;GBDJ01389358;XM_005406033 XP_005406090 MODEL 8890756 protein-coding Slc43a1 solute carrier family 43 member 1 ENCODES a protein that exhibits L-amino acid transmembrane transporter activity (ortholog); L-isoleucine transmembrane transporter activity (ortholog); L-leucine transmembrane transporter activity (ortholog); INVOLVED IN isoleucine transport (ortholog); L-amino acid transport (ortholog); L-leucine transport (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog); podocyte foot (ortholog) NW_004955511 2474173 2490508 - 102017592 AGCD01066408;GBDJ01234525;XM_005407995;XM_013506490;XM_013506491;XM_013506492;XM_013506493 XP_005408052;XP_013361944;XP_013361945;XP_013361946;XP_013361947 MODEL 9035736 ncrna LOC102024275 uncharacterized LOC102024275 NW_004955540 1652575 1655151 - 102024275 AGCD01071306;GBDF01189067;XR_264819 MODEL 8822132 protein-coding Slc25a32 solute carrier family 25 member 32 ENCODES a protein that exhibits FAD transmembrane transporter activity (ortholog); INVOLVED IN mitochondrial FAD transmembrane transport (ortholog); PARTICIPATES IN folate cycle metabolic pathway; ASSOCIATED WITH Cohen syndrome (ortholog); Exercise Intolerance (ortholog); prostate cancer (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955417 27530806 27545103 - 102021443 AGCD01018559;GBBH01025020;XM_013512707 XP_013368161 MODEL 8732733 protein-coding Rcor1 REST corepressor 1 ENCODES a protein that exhibits chromatin binding (ortholog); enzyme binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); Colonic Neoplasms (ortholog); immunodeficiency 132A (ortholog); FOUND IN DNA repair complex (ortholog); histone methyltransferase complex (ortholog); nucleoplasm (ortholog) NW_004955538 1774910 1880550 + 102003586 AGCD01071088;AGCD01071089;GBDF01187302;GBDJ01279131;XM_005410756;XM_013507882 XP_005410813;XP_013363336 MODEL 9033471 protein-coding Slx4ip SLX4 interacting protein ASSOCIATED WITH ALAGILLE SYNDROME 1 (ortholog); Bardet-Biedl syndrome (ortholog); congenital myasthenic syndrome 18 (ortholog) NW_004955415 20316664 20478786 + 102025455 AGCD01016487;AGCD01016488;AGCD01016489;GBDF01188952;XM_005380876;XM_005380877;XM_013512259;XM_013512260 XP_005380933;XP_005380934;XP_013367713;XP_013367714 MODEL 8994864 pseudo LOC102006491 ferritin heavy chain-like NW_004955434 1171311 1191802 + 102006491 AGCD01032056;AGCD01032057 MODEL 8987885 protein-coding Pkp3 plakophilin 3 ENCODES a protein that exhibits alpha-catenin binding (ortholog); cell adhesion molecule binding (ortholog); enzyme binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); desmosome assembly (ortholog); desmosome organization (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN adherens junction (ortholog); cell junction (ortholog); cell-cell junction (ortholog) NW_004955476 11611240 11619210 - 102024793 AGCD01055466;GBCQ01150316;XM_005401870 XP_005401927 MODEL 9043790 protein-coding Rsph1 radial spoke head component 1 INVOLVED IN axoneme assembly (ortholog); spermatid development (ortholog); ASSOCIATED WITH bronchiectasis (ortholog); cataract 9 multiple types (ortholog); Ciliary Motility Disorders (ortholog); FOUND IN 9+2 motile cilium (ortholog); axoneme (ortholog); condensed nuclear chromosome (ortholog) NW_004955407 39266888 39284972 + 102009802 AGCD01007824;GBDI01006193;XM_005375812;XM_005375813 XP_005375869;XP_005375870 MODEL 10312542 ncrna LOC106147010 uncharacterized LOC106147010 NW_004955407 29440595 29451767 - 106147010 AGCD01007609;GBDF01266779;XR_001231705 MODEL 39133367 snorna SNORD15 Small nucleolar RNA SNORD15 8804149 pseudo LOC102008343 40S ribosomal protein S6 pseudogene NW_004955515 3520030 3520862 + 102008343 AGCD01067288 MODEL 8730951 protein-coding Ncf1 neutrophil cytosolic factor 1 ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN cellular defense response (ortholog); cellular response to glucose stimulus (ortholog); cellular response to testosterone stimulus (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); autosomal recessive chronic granulomatous disease 1 (ortholog); chronic granulomatous disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog) NW_004955456 13353780 13363956 - 102014744 AGCD01046587;GBDI01081905;XM_005396736 XP_005396793 MODEL 8729976 protein-coding Serinc1 serine incorporator 1 ENCODES a protein that exhibits acetyltransferase activator activity (ortholog); enzyme binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN membrane biogenesis (ortholog); phosphatidylserine metabolic process (ortholog); sphingolipid metabolic process (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955436 4414629 4435353 - 102025505 AGCD01033663;AGCD01033664;AGCD01033665;GBCE01004273;XM_005389150 XP_005389207 MODEL 8792162 protein-coding Pi16 peptidase inhibitor 16 INVOLVED IN negative regulation of cell growth involved in cardiac muscle cell development (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN extracellular space (ortholog) NW_004955437 6066685 6075077 - 102023293 AGCD01034414;GBBH01004356;XM_005389631;XM_013517114;XM_013517115 XP_005389688;XP_013372568;XP_013372569 MODEL 8991887 protein-coding Trpm4 transient receptor potential cation channel subfamily M member 4 ENCODES a protein that exhibits ATP binding (ortholog); calcium channel activity (ortholog); calcium ion binding (ortholog); INVOLVED IN calcium ion transport (ortholog); calcium-mediated signaling (ortholog); cellular response to ATP (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrioventricular block (ortholog); Bradycardia (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); membrane (ortholog) NW_004955559 1539036 1581800 - 102022131 AGCD01073648;AGCD01073649;AGCD01073650;AGCD01073651;GBDJ01147170;XM_005412902;XM_005412903 XP_005412959;XP_005412960 MODEL 8780199 protein-coding Tiam2 TIAM Rac1 associated GEF 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); ASSOCIATED WITH chromosome 6q24-q25 deletion syndrome (ortholog); substance-related disorder (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog) NW_004955439 6942702 7147145 - 102019737 AGCD01035762;AGCD01035763;GBDJ01185825;XM_005390545;XM_005390546;XM_005390547;XM_013517329;XM_013517330 XP_005390602;XP_005390603;XP_005390604;XP_013372783;XP_013372784 MODEL 8752499 protein-coding Srd5a1 steroid 5 alpha-reductase 1 ENCODES a protein that exhibits 3-oxo-5-alpha-steroid 4-dehydrogenase activity (ortholog); amide binding (ortholog); NADPH binding (ortholog); INVOLVED IN androgen biosynthetic process (ortholog); androgen catabolic process (ortholog); androgen metabolic process (ortholog); PARTICIPATES IN testosterone biosynthetic pathway; ASSOCIATED WITH alcohol dependence (ortholog); breast carcinoma (ortholog); Cardiomegaly (ortholog); FOUND IN cell body fiber (ortholog); neuronal cell body (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955504 4360909 4388964 + 102015422 AGCD01064883;GBCB01024373;XM_005407066 XP_005407123 MODEL 8738818 protein-coding Otud4 OTU deubiquitinase 4 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); K63-linked deubiquitinase activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); DNA alkylation repair (ortholog); negative regulation of interleukin-1-mediated signaling pathway (ortholog); ASSOCIATED WITH amenorrhea (ortholog); FOUND IN cytosol (ortholog) NW_004955428 1062998 1108711 - 102004303 AGCD01027599;AGCD01027600;GBCB01023470;GBCE01123255;XM_005386641;XM_013515277 XP_005386698;XP_013370731 MODEL 9014030 pseudo LOC102017473 protein FAM118B-like NW_004955424 21550353 21551367 - 102017473 AGCD01024900 MODEL 8981091 protein-coding Emilin1 elastin microfibril interfacer 1 ENCODES a protein that exhibits extracellular matrix constituent conferring elasticity (ortholog); identical protein binding (ortholog); integrin binding involved in cell-matrix adhesion (ortholog); INVOLVED IN aortic valve morphogenesis (ortholog); cell adhesion mediated by integrin (ortholog); cell migration (ortholog); ASSOCIATED WITH arterial tortuosity syndrome (ortholog); ARTERIAL TORTUOSITY-BONE FRAGILITY SYNDROME (ortholog); autosomal dominant distal hereditary motor neuronopathy 10 (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); EMILIN complex (ortholog); extracellular matrix (ortholog) NW_004955469 9049666 9057692 + 102019051 AGCD01052488;GBCE01031448;XM_005400450 XP_005400507 MODEL 8704247 pseudo LOC102005408 nucleosome assembly protein 1-like 1 pseudogene NW_004955515 171191 172070 + 102005408 AGCD01067185 MODEL 10148741 protein-coding LOC106149839 2'-5'-oligoadenylate synthase-like protein 2 NW_004955455 10629150 10649229 + 106149839 AGCD01045960;AGCD01045961;GBDJ01222789;XM_013520315 XP_013375769 MODEL 8936915 protein-coding Pom121l12 POM121 transmembrane nucleoporin like 12 ASSOCIATED WITH autistic disorder (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955465 8249402 8251149 + 102007750 AGCD01050471;GBDF01221912;XM_005398875 XP_005398932 MODEL 8867331 protein-coding Plscr1 phospholipid scramblase 1 ENCODES a protein that exhibits calcium ion binding (ortholog); CD4 receptor binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN acute-phase response (ortholog); apoptotic process (ortholog); cellular response to cytokine stimulus (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); Human Influenza (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955474 10953381 10989100 + 102017977 AGCD01054604;AGCD01054605;GBCQ01123186;XM_005401430;XM_005401431;XM_005401432;XM_013502784 XP_005401487;XP_005401488;XP_005401489;XP_013358238 MODEL 9055703 protein-coding Psma2 proteasome 20S subunit alpha 2 INVOLVED IN response to virus (ortholog); ASSOCIATED WITH heart disease (ortholog); osteoporosis (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); P-body (ortholog) NW_004955460 880795 890718 + 102012836 AGCD01048350;GBDI01008253;XM_005397715 XP_005397772 MODEL 8735455 protein-coding Snx17 sorting nexin 17 ENCODES a protein that exhibits low-density lipoprotein particle receptor binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN aorta development (ortholog); cardiac septum development (ortholog); coronary vasculature development (ortholog); ASSOCIATED WITH retinitis pigmentosa (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955469 9334562 9340766 + 102029386 AGCD01052498;GBDI01076358;XM_005400489;XM_005400490 XP_005400546;XP_005400547 MODEL 9021950 pseudo LOC102010247 S-phase kinase-associated protein 1 pseudogene NW_004955413 5920746 5923360 + 102010247 AGCD01013695 MODEL 8736702 pseudo LOC102006494 geranylgeranyl transferase type-2 subunit beta pseudogene NW_004955436 18078850 18082980 - 102006494 AGCD01033955 MODEL 8970273 protein-coding Prmt6 protein arginine methyltransferase 6 ENCODES a protein that exhibits chromatin binding (ortholog); histone arginine N-methyltransferase activity (ortholog); histone binding (ortholog); INVOLVED IN cellular senescence (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN histone modification pathway; homocysteine metabolic pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); Cocaine-Related Disorders (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955435 10816787 10818047 + 102015441 AGCD01033100;GBCB01051915;XM_005388819 XP_005388876 MODEL 8785372 pseudo LOC102023272 olfactory receptor-like protein OLF3 NW_004955491 242552 243621 + 102023272 AGCD01060325 MODEL 8770578 ncrna LOC102021557 uncharacterized LOC102021557 NW_004955482 5627591 5629868 - 102021557 AGCD01057343;XR_263833 MODEL 8945854 protein-coding Pard3 par-3 family cell polarity regulator ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN apical constriction (ortholog); bicellular tight junction assembly (ortholog); centrosome localization (ortholog); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); neural tube defect (ortholog); primary ovarian insufficiency (ortholog); FOUND IN adherens junction (ortholog); apical junction complex (ortholog); axonal growth cone (ortholog) NW_004955462 2930171 3457358 + 102020313 AGCD01049191;AGCD01049192;AGCD01049193;AGCD01049194;AGCD01049195;AGCD01049196;AGCD01049197;AGCD01049198;AGCD01049199;AGCD01049200;AGCD01049201;AGCD01049202;GBDJ01389442;XM_005398126;XM_013521382;XM_013521383;XM_013521384;XM_013521385;XM_013521386;XM_013521388;XM_013521389;XM_013521390;XM_013521391;XM_013521392;XM_013521393;XM_013521394;XM_013521395;XM_013521396;XM_013521397;XM_013521399;XM_013521400;XM_013521401;XM_013521402 XP_005398183;XP_013376836;XP_013376837;XP_013376838;XP_013376839;XP_013376840;XP_013376842;XP_013376843;XP_013376844;XP_013376845;XP_013376846;XP_013376847;XP_013376848;XP_013376849;XP_013376850;XP_013376851;XP_013376853;XP_013376854;XP_013376855;XP_013376856 MODEL 9043073 pseudo LOC102008345 phosducin-like protein 3 pseudogene NW_004955434 11550951 11551673 + 102008345 AGCD01032380 MODEL 8825724 protein-coding LOC102011407 olfactory receptor 9K2-like NW_004955458 2281743 2282727 + 102011407 AGCD01047223;XM_013520797 XP_013376251 MODEL 8827214 protein-coding LOC102011826 60S ribosomal protein L17 NW_004955402 34568222 34571290 - 102011826 AGCD01000865;GBDF01002140;XM_013510590 XP_013366044 MODEL 8863175 protein-coding Ptprd protein tyrosine phosphatase receptor type D ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); Breast Neoplasms (ortholog); chromosome 9p deletion syndrome (ortholog); FOUND IN glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); presynaptic membrane (ortholog) NW_004955434 12033825 14132636 - 102009647 AGCD01032383;AGCD01032384;AGCD01032385;AGCD01032386;AGCD01032387;AGCD01032388;AGCD01032389;AGCD01032390;AGCD01032391;AGCD01032392;AGCD01032393;AGCD01032394;AGCD01032395;AGCD01032396;AGCD01032397;AGCD01032398;AGCD01032399;AGCD01032400;AGCD01032401;AGCD01032402;AGCD01032403;AGCD01032404;AGCD01032405;AGCD01032406;AGCD01032407;AGCD01032408;AGCD01032409;AGCD01032410;AGCD01032411;AGCD01032412;AGCD01032413;AGCD01032414;AGCD01032415;AGCD01032416;AGCD01032417;AGCD01032418;GBBH01036507;XM_013516328;XM_013516329;XM_013516330;XM_013516331;XM_013516332;XM_013516333;XM_013516334;XM_013516335;XM_013516336;XM_013516337 XP_013371782;XP_013371783;XP_013371784;XP_013371785;XP_013371786;XP_013371787;XP_013371788;XP_013371789;XP_013371790;XP_013371791 MODEL 8766832 ncrna LOC102006834 uncharacterized LOC102006834 NW_004955445 2237508 2240322 - 102006834 AGCD01039351;GBDF01077375;XR_262296 MODEL 8920865 ncrna LOC102010579 uncharacterized LOC102010579 NW_004955416 6320380 6345046 + 102010579 AGCD01016940;AGCD01016941;XR_260358 MODEL 8875990 protein-coding Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); INVOLVED IN cellular response to ionizing radiation (ortholog); cellular response to UV (ortholog); DNA damage checkpoint signaling (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); nucleus (ortholog) NW_004955429 18408121 18415832 + 102024260 AGCD01028902;AGCD01028903;GBDF01047104;XM_005387125;XM_005387126;XM_005387127;XM_005387128;XM_013515475;XR_001234519;XR_001234520 XP_005387182;XP_005387183;XP_005387184;XP_005387185;XP_013370929 MODEL 8746778 protein-coding Pi4k2a phosphatidylinositol 4-kinase type 2 alpha ENCODES a protein that exhibits 1-phosphatidylinositol 4-kinase activity (ortholog); AP-3 adaptor complex binding (ortholog); ATP binding (ortholog); INVOLVED IN basophil degranulation (ortholog); phosphatidylinositol biosynthetic process (ortholog); phosphatidylinositol phosphate biosynthetic process (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH NEURODEVELOPMENTAL DISORDER WITH HYPERKINETIC MOVEMENTS, SEIZURES, AND STRUCTURAL BRAIN ABNORMALITIES (ortholog); FOUND IN BLOC-1 complex (ortholog); cytoplasmic vesicle (ortholog); dendrite (ortholog) NW_004955507 3729947 3761703 + 102030102 AGCD01065633;AGCD01065634;AGCD01065635;GBCB01098339;GBDF01156561;XM_013506190;XM_013506191 XP_013361644;XP_013361645 MODEL 8720878 protein-coding Pex1 peroxisomal biogenesis factor 1 ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); protein transporter activity (ortholog); INVOLVED IN microtubule-based peroxisome localization (ortholog); peroxisome organization (ortholog); protein import into peroxisome matrix (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); epilepsy (ortholog); fundus dystrophy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); peroxisomal membrane (ortholog) NW_004955432 9418480 9461507 - 102005290 AGCD01030906;GBDI01218587;XM_005388022;XM_005388023;XM_013515937 XP_005388079;XP_005388080;XP_013371391 MODEL 8938220 ncrna LOC102012610 uncharacterized LOC102012610 NW_004955407 39310523 39313107 + 102012610 AGCD01007824;GBBH01151673;XR_259626 MODEL 8827848 protein-coding LOC102003671 zinc finger protein 431-like NW_004955499 450865 478358 - 102003671 AGCD01063232;GBDI01258841;XM_005406501;XM_013505568;XM_013505569 XP_005406558;XP_013361022;XP_013361023 MODEL 8746294 protein-coding Slx9 SLX9 ribosome biogenesis factor ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); cataract 9 multiple types (ortholog) NW_004955407 41812808 41834661 + 102011404 AGCD01007882;AGCD01007883;GBBH01119448;XM_005375907 XP_005375964 MODEL 8938102 pseudo LOC102007960 ubiquitin-conjugating enzyme E2 L3 pseudogene NW_004955403 1242593 1242983 + 102007960 AGCD01001717 MODEL 8811326 protein-coding Pdc phosducin ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN photoreceptor outer segment (ortholog) NW_004955406 24857791 24873057 - 102013794 AGCD01006209;XM_005375090 XP_005375147 MODEL 8989982 protein-coding Tpd52 tumor protein D52 ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN B cell differentiation (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH Neoplasm Recurrence, Local (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); glutamatergic synapse (ortholog) NW_004955444 1230730 1261839 + 102011058 AGCD01038717;AGCD01038718;GBDF01082643;XM_005392060;XM_005392062;XM_005392063;XM_013518179 XP_005392117;XP_005392119;XP_005392120;XP_013373633 MODEL 10267428 ncrna LOC106147011 uncharacterized LOC106147011 NW_004955407 21518852 21525489 + 106147011 AGCD01007366;GBDF01234785;XR_001231706;XR_001231707 MODEL 39132053 snorna SNORD16 Small nucleolar RNA SNORD16 8779601 protein-coding Rsph10b radial spoke head 10 homolog B ASSOCIATED WITH Lynch syndrome (ortholog); Lynch syndrome 1 (ortholog); FOUND IN cilium (ortholog); sperm flagellum (ortholog) NW_004955460 13791666 13840754 + 102024881 AGCD01048723;AGCD01048724;AGCD01048725;AGCD01048726;GBDJ01085522;XM_005397900;XM_013521161;XM_013521163 XP_005397957;XP_013376615;XP_013376617 MODEL 8885086 protein-coding Lgsn lengsin, lens protein with glutamine synthetase domain FOUND IN plasma membrane (ortholog) NW_004955502 522492 551842 + 102024138 AGCD01064244;AGCD01064245;GBDK01178703;XM_005406877;XM_013505813 XP_005406934;XP_013361267 MODEL 8721023 protein-coding LOC102009464 chromosome unknown open reading frame, human C5orf15 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955408 5245336 5256655 - 102009464 AGCD01008129;GBCQ01005179;XM_005376124;XM_005376125 XP_005376181;XP_005376182 MODEL 8729820 ncrna LOC102021559 uncharacterized LOC102021559 NW_004955484 6885587 6902049 + 102021559 AGCD01058297;GBDF01041123;XR_263891;XR_263892 MODEL 39131975 snorna SNORA2C small nucleolar RNA, H/ACA box 2C 9018905 protein-coding Brox BRO1 domain and CAAX motif containing INVOLVED IN mitotic nuclear membrane reassembly (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); Loeys-Dietz syndrome 4 (ortholog); parathyroid carcinoma (ortholog); FOUND IN nuclear envelope (ortholog) NW_004955520 1797657 1819359 - 102017050 AGCD01068062;GBCQ01127688;XM_005409252;XM_005409253;XM_013507023;XM_013507025;XM_013507026 XP_005409309;XP_005409310;XP_013362477;XP_013362479;XP_013362480 MODEL 8976257 pseudo LOC102017477 heterogeneous nuclear ribonucleoprotein D-like pseudogene NW_004955503 587031 588337 + 102017477 AGCD01064516;XM_005406924 MODEL 8991955 protein-coding Slc25a33 solute carrier family 25 member 33 ENCODES a protein that exhibits pyrimidine nucleotide transmembrane transporter activity (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); cellular response to insulin-like growth factor stimulus (ortholog); mitochondria-nucleus signaling pathway (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955486 3905001 3921501 - 102022298 AGCD01059044;GBBH01118527;GBCB01072973;XM_013504167 XP_013359621 MODEL 8767813 protein-coding Emilin2 elastin microfibril interfacer 2 INVOLVED IN negative regulation of cell migration (ortholog); positive regulation of angiogenesis (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); facioscapulohumeral muscular dystrophy 2 (ortholog); holoprosencephaly 4 (ortholog); FOUND IN extracellular region (ortholog) NW_004955402 7507674 7519978 - 102016008 AGCD01000175;AGCD01000176;GBDF01025495;GBDI01175041;XM_013518815 XP_013374269 MODEL 10270049 pseudo LOC106149840 programmed cell death protein 5-like NW_004955455 10651864 10656010 + 106149840 AGCD01045961 MODEL 8925355 pseudo LOC102005409 CTD small phosphatase-like protein 2 pseudogene NW_004955520 665791 667200 - 102005409 AGCD01068028 MODEL 8821925 pseudo LOC102012616 phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-like NW_004955410 34241134 34241470 - 102012616 AGCD01011399 MODEL 9050250 protein-coding Trim7 tripartite motif containing 7 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955530 119088 128353 + 102003481 AGCD01069830;GBDK01397066;XM_005410097;XM_005410098 XP_005410154;XP_005410155 MODEL 8970130 protein-coding Pkp4 plakophilin 4 INVOLVED IN cell-cell junction assembly (ortholog); positive regulation of cytokinesis (ortholog); regulation of Rho protein signal transduction (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN cell junction (ortholog); cell-cell contact zone (ortholog); cell-cell junction (ortholog) NW_004955449 14835423 15050237 - 102009238 AGCD01042179;AGCD01042180;GBCE01076404;GBDJ01140016;XM_005393383;XM_005393387;XM_013518709;XM_013518710;XM_013518711;XM_013518712;XM_013518713;XM_013518714 XP_005393440;XP_005393444;XP_013374163;XP_013374164;XP_013374165;XP_013374166;XP_013374167;XP_013374168 MODEL 8994774 protein-coding Psma3 proteasome 20S subunit alpha 3 ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Joubert syndrome 23 (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); proteasome complex (ortholog) NW_004955466 11979482 11997952 + 102003955 AGCD01051106;GBDJ01081389;XM_005399214;XM_013521926 XP_005399271;XP_013377380 MODEL 8755528 protein-coding LOC102011010 steroid 17-alpha-hydroxylase/17,20 lyase ENCODES a protein that exhibits heme binding (ortholog); steroid 17-alpha-monooxygenase activity (ortholog); INVOLVED IN adrenal gland development (ortholog); androgen biosynthetic process (ortholog); biphenyl metabolic process (ortholog); PARTICIPATES IN 11-beta-hydroxylase deficiency pathway; 17-alpha-hydroxylase deficiency pathway; 21-alpha-hydroxylase deficiency pathway; ASSOCIATED WITH 17,20-Lyase Deficiency, Isolated (ortholog); amenorrhea (ortholog); breast cancer (ortholog); FOUND IN axon (ortholog); cell projection (ortholog); endoplasmic reticulum (ortholog) NW_004955485 7615132 7652899 + 102011010 AGCD01058665;AGCD01058666;AGCD01058667;AGCD01058668;AGCD01058669;GBDF01163210;XM_005403822 XP_005403879 MODEL 39133326 snrna U4 U4 spliceosomal RNA 8925847 protein-coding Ncf2 neutrophil cytosolic factor 2 ENCODES a protein that exhibits small GTPase binding (ortholog); superoxide-generating NAD(P)H oxidase activity (ortholog); superoxide-generating NADPH oxidase activator activity (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); positive regulation of blood pressure (ortholog); positive regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH Acute Otitis Media; 1q24 Deletion Syndrome (ortholog); Alzheimer's disease (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955406 22355717 22384746 - 102026600 AGCD01006157;GBDJ01215355;XM_005375038;XM_013521507 XP_005375095;XP_013376961 MODEL 39132284 snorna SNORD17 small nucleolar RNA, C/D box 17 8868943 protein-coding Snx18 sorting nexin 18 ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN cleavage furrow formation (ortholog); endocytosis (ortholog); endosomal transport (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasmic side of plasma membrane (ortholog); cytoplasmic vesicle (ortholog) NW_004955446 13043821 13067933 - 102014096 AGCD01040245;GBDJ01129277;XM_005392757 XP_005392814 MODEL 9053374 ncrna LOC102005410 uncharacterized LOC102005410 NW_004955435 5085524 5096408 - 102005410 AGCD01032876;GBDF01087889;XR_001234879 MODEL 8935333 pseudo LOC102015575 ubiquitin-conjugating enzyme E2 N-like NW_004955444 18531130 18531656 - 102015575 AGCD01039242 MODEL 8877078 pseudo LOC102008351 39S ribosomal protein L47, mitochondrial pseudogene NW_004955438 21220270 21221541 - 102008351 AGCD01035530 MODEL 8926674 protein-coding Prmt7 protein arginine methyltransferase 7 ENCODES a protein that exhibits histone binding (ortholog); histone H4 methyltransferase activity (ortholog); histone H4R3 methyltransferase activity (ortholog); INVOLVED IN genomic imprinting (ortholog); peptidyl-arginine methylation (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN histone modification pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH acanthosis nigricans (ortholog); autosomal dominant dyskeratosis congenita 6 (ortholog); brachydactyly (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955484 8299427 8352465 - 102009842 AGCD01058374;AGCD01058375;AGCD01058376;XM_005403584;XM_013503916;XM_013503917 XP_005403641;XP_013359370;XP_013359371 MODEL 8856386 protein-coding Pard3b par-3 family cell polarity regulator beta ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); primary pulmonary hypertension (ortholog); schizophrenia (ortholog); FOUND IN cell junction (ortholog); protein-containing complex (ortholog) NW_004955457 9367942 10232855 - 102020423 AGCD01046935;AGCD01046936;AGCD01046937;AGCD01046938;AGCD01046939;AGCD01046940;AGCD01046941;AGCD01046942;AGCD01046943;AGCD01046944;AGCD01046945;AGCD01046946;AGCD01046947;AGCD01046948;AGCD01046949;AGCD01046950;AGCD01046951;AGCD01046952;GBBH01082356;XM_013520665 XP_013376119 MODEL 8994969 ncrna LOC102011013 uncharacterized LOC102011013 NW_004955487 9073542 9074205 + 102011013 AGCD01059449;AGCD01059450;GBDF01127916;XR_263991 MODEL 9038826 protein-coding Ticam1 toll like receptor adaptor molecule 1 ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein kinase binding (ortholog); signaling adaptor activity (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); B cell activation (ortholog); B cell proliferation (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH Herpes Simplex Encephalitis (ortholog); Herpes Simplex Encephalitis 4 (ortholog); pneumoconiosis (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); endosome (ortholog) NW_004955495 4197083 4204999 + 102004084 AGCD01061902;GBDI01013112;XM_005405780;XM_005405782 XP_005405837;XP_005405839 MODEL 8699698 protein-coding LOC102011408 zinc finger protein 354A NW_004955408 1675669 1691620 + 102011408 AGCD01007971;AGCD01007972;AGCD01007973;GBCB01038314;GBCB01038318;XM_013507993 XP_013363447 MODEL 8955221 pseudo LOC102009469 non-POU domain-containing octamer-binding protein pseudogene NW_004955458 11867254 11868199 - 102009469 AGCD01047762 MODEL 8865359 protein-coding Otud5 OTU deubiquitinase 5 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); deubiquitinase activity (ortholog); K48-linked deubiquitinase activity (ortholog); INVOLVED IN CD8-positive, alpha-beta T cell differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of interleukin-17 production (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); endocrine-cerebro-osteodysplasia syndrome (ortholog); FOUND IN nucleus (ortholog) NW_004955543 452172 484564 - 102028579 AGCD01071585;AGCD01071586;AGCD01071587;GBBH01091173;XM_005411292;XM_005411293;XM_013508153;XM_013508154 XP_005411349;XP_005411350;XP_013363607;XP_013363608 MODEL 8958384 protein-coding Pom121l2 POM121 transmembrane nucleoporin like 2 NW_004955465 13175383 13178722 - 102003954 AGCD01050591;GBDF01007095;XM_005399007 XP_005399064 MODEL 39132098 snorna SNORA30B small nucleolar RNA, H/ACA box 30B 10317795 ncrna LOC106147012 uncharacterized LOC106147012 NW_004955511 3535929 3538074 - 106147012 AGCD01066466;GBCQ01102170;XR_001231708 MODEL 8886352 protein-coding Serinc2 serine incorporator 2 ENCODES a protein that exhibits acetyltransferase activator activity (ortholog); phospholipid scramblase activity (ortholog); INVOLVED IN phosphatidylserine metabolic process (ortholog); plasma membrane phospholipid scrambling (ortholog); FOUND IN plasma membrane (ortholog) NW_004955452 9905152 9914943 + 102008911 AGCD01044263;GBBH01064457;GBDI01080614;XM_013519725 XP_013375179 MODEL 8868228 pseudo LOC102023274 carnosine N-methyltransferase-like NW_004955422 21499510 21502368 - 102023274 AGCD01023122;AGCD01023123 MODEL 8830058 protein-coding Srd5a2 steroid 5 alpha-reductase 2 ENCODES a protein that exhibits 3-oxo-5-alpha-steroid 4-dehydrogenase (NADP+) activity (ortholog); 3-oxo-5-alpha-steroid 4-dehydrogenase activity (ortholog); amide binding (ortholog); INVOLVED IN androgen biosynthetic process (ortholog); androgen metabolic process (ortholog); biphenyl metabolic process (ortholog); PARTICIPATES IN testosterone biosynthetic pathway; ASSOCIATED WITH alopecia (ortholog); autism spectrum disorder (ortholog); Autoinflammation with Infantile Enterocolitis (ortholog); FOUND IN cell body fiber (ortholog); neuronal cell body (ortholog) NW_004955441 12149 95733 - 102020288 AGCD01036675;AGCD01036676;AGCD01036677;AGCD01036678;GBDF01286957;XM_005390834 XP_005390891 MODEL 8724894 protein-coding Slc43a2 solute carrier family 43 member 2 ENCODES a protein that exhibits L-amino acid transmembrane transporter activity (ortholog); L-isoleucine transmembrane transporter activity (ortholog); L-leucine transmembrane transporter activity (ortholog); INVOLVED IN isoleucine transport (ortholog); L-amino acid transport (ortholog); L-leucine transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955481 1550289 1597213 + 102019390 AGCD01056836;AGCD01056837;AGCD01056838;GBDF01222975;XM_005402617;XM_005402618;XM_013503413 XP_005402674;XP_005402675;XP_013358867 MODEL 8884071 protein-coding LOC102019004 uncharacterized LOC102019004 NW_004955593 267249 672416 + 102019004 AGCD01076371;AGCD01076372;AGCD01076373;AGCD01076374;AGCD01076375;AGCD01076376;AGCD01076377;AGCD01076378;AGCD01076379;AGCD01076380;AGCD01076381;AGCD01076382;AGCD01076383;AGCD01076384;AGCD01076385;AGCD01076386;AGCD01076387;AGCD01076388;AGCD01076389;AGCD01076390;AGCD01076391;AGCD01076392;AGCD01076393;AGCD01076394;AGCD01076395;GBDF01262450;GBDJ01343577;XM_005414632 XP_005414689 MODEL 8797223 protein-coding Trim71 tripartite motif containing 71 ENCODES a protein that exhibits miRNA binding (ortholog); translation repressor activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); fibroblast growth factor receptor signaling pathway (ortholog); G1/S transition of mitotic cell cycle (ortholog); ASSOCIATED WITH Congenital Communicating Hydrocephalus 1 (ortholog); COVID-19 (ortholog); CRYPTOZOOSPERMIA (ortholog); FOUND IN P-body (ortholog) NW_004955421 97130 174326 + 102026436 AGCD01021547;AGCD01021548;AGCD01021549;AGCD01021550;GBDF01285530;XM_013513644 XP_013369098 MODEL 8959594 protein-coding Lhb luteinizing hormone subunit beta INVOLVED IN luteinizing hormone signaling pathway involved in ovarian follicle development (ortholog); PARTICIPATES IN luteinizing hormone signaling pathway; ASSOCIATED WITH alcohol use disorder (ortholog); Bradycardia (ortholog); Cocaine-Related Disorders (ortholog); FOUND IN cytoplasm (ortholog) NW_004955559 1656106 1657192 + 102025951 AGCD01073658;XM_005415296 XP_005415353 MODEL 8959795 ncrna LOC102006838 uncharacterized LOC102006838 NW_004955445 17445275 17465555 - 102006838 AGCD01039888;AGCD01039889;AGCD01039890;GBDF01307023;XR_001235559;XR_001235560;XR_262346 MODEL 8794718 protein-coding Wdr1 WD repeat domain 1 ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament fragmentation (ortholog); apical junction assembly (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); autosomal dominant intellectual developmental disorder 61 (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); cell junction (ortholog); cell-cell junction (ortholog) NW_004955549 2640193 2674818 + 102012586 AGCD01072480;GBCQ01034784;GBDJ01009712;XM_013508539 XP_013363993 MODEL 9016505 protein-coding Pex10 peroxisomal biogenesis factor 10 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); peroxisome organization (ortholog); protein import into peroxisome matrix (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); dilated cardiomyopathy 1LL (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955486 8785199 8801914 + 102008421 AGCD01059156;GBDF01083507;XM_005404172;XM_013504178;XM_013504179 XP_005404229;XP_013359632;XP_013359633 MODEL 8706693 protein-coding Plscr3 phospholipid scramblase 3 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); lead ion binding (ortholog); INVOLVED IN apoptotic process (ortholog); cellular response to lipopolysaccharide (ortholog); cholesterol homeostasis (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytosol (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955467 9534462 9539738 + 102016998 AGCD01051516;GBDI01305134;XM_005399507;XM_013522122 XP_005399564;XP_013377576 MODEL 8983901 protein-coding LOC102010250 mitochondrial ornithine transporter 2 NW_004955415 12462640 12463852 + 102010250 AGCD01016197;GBDF01083463;XM_005380737 XP_005380794 MODEL 8961125 protein-coding Brpf1 bromodomain and PHD finger containing 1 ENCODES a protein that exhibits acetyltransferase activator activity (ortholog); histone H4K12 acetyltransferase activity (ortholog); histone H4K5 acetyltransferase activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); common myeloid progenitor cell proliferation (ortholog); neural tube formation (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); autistic disorder (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); histone acetyltransferase complex (ortholog) NW_004955561 1260237 1275953 + 102006294 AGCD01073845;GBDF01089085;XM_005413023;XM_005413024;XM_005413025;XM_005413026;XM_005413027;XM_005413028;XM_013509081 XP_005413080;XP_005413081;XP_005413082;XP_005413083;XP_005413084;XP_005413085;XP_013364535 MODEL 8764212 protein-coding Rab32 RAB32, member RAS oncogene family ENCODES a protein that exhibits AP-1 adaptor complex binding (ortholog); AP-2 adaptor complex binding (ortholog); AP-3 adaptor complex binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); endosome to melanosome transport (ortholog); melanosome assembly (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); Experimental Liver Cirrhosis (ortholog); fragile X syndrome (ortholog); FOUND IN early endosome (ortholog); early endosome lumen (ortholog); endoplasmic reticulum (ortholog) NW_004955436 14171123 14177255 - 102005504 AGCD01033868;GBCC01045894;GBCQ01062627;XM_013516677 XP_013372131 MODEL 9034501 ncrna LOC102009472 uncharacterized LOC102009472 NW_004955462 1145564 1150883 - 102009472 AGCD01049102;AGCD01049103;GBDF01041427;XR_263087 MODEL 10288273 ncrna LOC106149841 uncharacterized LOC106149841 NW_004955455 16321297 16323788 - 106149841 AGCD01046147;GBDF01122628;XR_001236274;XR_001236275 MODEL 9029086 protein-coding LOC102024281 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4-like NW_004955439 14974380 14974592 + 102024281 AGCD01035995;XM_005390647 XP_005390704 MODEL 8825168 protein-coding Emilin3 elastin microfibril interfacer 3 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN cytoplasm (ortholog) NW_004955445 15590996 15599813 + 102028030 AGCD01039848;GBDK01269639;XM_005392503;XM_005392505;XM_013518276 XP_005392560;XP_005392562;XP_013373730 MODEL 150537117 snorna SNORA35 small nucleolar RNA, H/ACA box 35 9021303 ncrna LOC102012627 uncharacterized LOC102012627 NW_004955414 6716037 6849197 - 102012627 AGCD01014930;AGCD01014931;AGCD01014932;AGCD01014933;AGCD01014934;AGCD01014935;AGCD01014936;AGCD01014937;AGCD01014938;AGCD01014939;AGCD01014940;GBDK01105428;XR_001233085;XR_001233086;XR_001233087;XR_001233088;XR_001233089;XR_001233090;XR_001233091;XR_001233092;XR_001233093;XR_260159;XR_260161 MODEL 8996910 protein-coding Tpd52l1 TPD52 like 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN G2/M transition of mitotic cell cycle (ortholog); positive regulation of apoptotic signaling pathway (ortholog); positive regulation of JNK cascade (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955436 6648140 6672474 + 102027674 AGCD01033691;GBCE01154531;GBDI01175773;XM_013516685 XP_013372139 MODEL 9034210 protein-coding Rsph14 radial spoke head 14 homolog ASSOCIATED WITH chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog); schizophrenia (ortholog); FOUND IN radial spoke (ortholog) NW_004955455 7491693 7574257 - 102025655 AGCD01045859;AGCD01045860;AGCD01045861;GBCE01089469;XM_005396368 XP_005396425 MODEL 10091758 ncrna LOC106149842 uncharacterized LOC106149842 NW_004955455 14485706 14490133 - 106149842 AGCD01046093;AGCD01046094;GBDJ01177366;XR_001236276 MODEL 8986534 protein-coding LOC102021560 olfactory receptor 1N2-like NW_004955419 5190554 5191489 - 102021560 AGCD01019788;XM_013513101 XP_013368555 MODEL 9062331 protein-coding Ptpre protein tyrosine phosphatase receptor type E ENCODES a protein that exhibits identical protein binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN cell surface receptor protein tyrosine phosphatase signaling pathway (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); regulation of mast cell activation (ortholog); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955477 5688936 5838264 + 102014893 AGCD01055598;GBDF01075904;XM_005402013;XM_005402014;XM_005402018;XM_005402019;XM_013503075;XM_013503076;XM_013503077;XM_013503078 XP_005402070;XP_005402071;XP_005402075;XP_005402076;XP_013358529;XP_013358530;XP_013358531;XP_013358532 MODEL 8831386 protein-coding Rho rhodopsin ENCODES a protein that exhibits retinal binding (ortholog); spectrin binding (ortholog); INVOLVED IN cellular response to light stimulus (ortholog); detection of light stimulus (ortholog); detection of temperature stimulus involved in thermoception (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH alkaptonuria (ortholog); Coats disease (ortholog); cone-rod dystrophy (ortholog); FOUND IN cell-cell junction (ortholog); Golgi apparatus (ortholog); photoreceptor disc membrane (ortholog) NW_004955429 17787337 17791982 - 102012673 AGCD01028867;GBBH01131777;XM_005387085 XP_005387142 MODEL 8985442 pseudo LOC102012628 ubiquitin-40S ribosomal protein S27a pseudogene NW_004955414 14752641 14753521 - 102012628 AGCD01015156 MODEL 9062900 pseudo LOC102008354 pre-mRNA-processing factor 17-like NW_004955441 193642 199372 - 102008354 AGCD01036688 MODEL 9003422 protein-coding Pi4k2b phosphatidylinositol 4-kinase type 2 beta ENCODES a protein that exhibits 1-phosphatidylinositol 4-kinase activity (ortholog); INVOLVED IN phosphatidylinositol phosphate biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN cytosol (ortholog); early endosome membrane (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955443 19728997 19760569 - 102023401 AGCD01038634;AGCD01038635;GBCB01040316;GBDF01006217;XM_005392044;XM_013518062 XP_005392101;XP_013373516 MODEL 8962480 pseudo LOC102003672 60S ribosomal protein L17 pseudogene NW_004955424 27996316 28003860 - 102003672 AGCD01025143;AGCD01025144;XM_005385817 MODEL 8825727 pseudo LOC102011411 60S ribosomal protein L18a pseudogene NW_004955459 4048909 4049495 + 102011411 AGCD01048022 MODEL 8724363 protein-coding Pard6a par-6 family cell polarity regulator alpha ENCODES a protein that exhibits GTP-dependent protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN cell-cell junction maintenance (ortholog); centrosome cycle (ortholog); establishment or maintenance of epithelial cell apical/basal polarity (ortholog); PARTICIPATES IN adenosine signaling pathway; insulin signaling pathway; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); chromosome 16q22 deletion syndrome (ortholog); FOUND IN axonal growth cone (ortholog); bicellular tight junction (ortholog); cell cortex (ortholog) NW_004955484 9019929 9022561 - 102026221 AGCD01058403;GBDJ01094443;XM_005403633;XM_005403634;XM_013503955 XP_005403690;XP_005403691;XP_013359409 MODEL 10167406 pseudo LOC102007961 Ig heavy chain V-III region 23-like NW_004955643 40217 40730 + 102007961 AGCD01077723 MODEL 8811114 pseudo LOC102006499 60S ribosomal protein L21 pseudogene NW_004955547 321133 321616 - 102006499 AGCD01072145;XR_264897 MODEL 8743759 protein-coding Otud6a OTU deubiquitinase 6A ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN protein K11-linked deubiquitination (ortholog); protein K27-linked deubiquitination (ortholog); protein K29-linked deubiquitination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955475 9626733 9629841 + 102018923 AGCD01055068;GBDF01251907;XM_005401605 XP_005401662 MODEL 8994906 protein-coding Trpm5 transient receptor potential cation channel subfamily M member 5 ENCODES a protein that exhibits calcium-activated cation channel activity (ortholog); monoatomic ion channel activity (ortholog); potassium channel activity (ortholog); INVOLVED IN monoatomic ion transmembrane transport (ortholog); positive regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog) NW_004955422 14180067 14202041 - 102009068 AGCD01022855;GBBH01106809;XM_013514348;XM_013514349 XP_013369802;XP_013369803 MODEL 8983765 protein-coding Smad1 SMAD family member 1 ENCODES a protein that exhibits co-SMAD binding (ortholog); DEAD/H-box RNA helicase binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN BMP signaling pathway (ortholog); bone development (ortholog); cardiac muscle cell proliferation (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH Cocaine-Related Disorders (ortholog); COVID-19 (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); heteromeric SMAD protein complex (ortholog) NW_004955428 1357398 1429521 + 102006052 AGCD01027609;AGCD01027610;AGCD01027611;GBDJ01233141;XM_005386647;XM_013515300;XM_013515301 XP_005386704;XP_013370754;XP_013370755 MODEL 8877656 protein-coding Pomc proopiomelanocortin ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); hormone activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); cell-cell signaling (ortholog); cellular pigmentation (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; altered energy homeostasis pathway; altered melanocortin system pathway; ASSOCIATED WITH ACTH Syndrome, Ectopic (ortholog); acute kidney failure (ortholog); acute kidney tubular necrosis (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); extracellular space (ortholog) NW_004955469 7217233 7220401 - 102003750 AGCD01052411;GBDF01002960;XM_005400399;XM_013522557 XP_005400456;XP_013378011 MODEL 8999499 ncrna LOC102011827 uncharacterized LOC102011827 NW_004955592 446843 448929 - 102011827 AGCD01076315;GBCC01022945;XR_265138 MODEL 8701061 protein-coding LOC102011427 chromosome unknown open reading frame, human C19orf12 INVOLVED IN apoptotic process (ortholog); autophagy (ortholog); mitochondrial calcium ion homeostasis (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); mitochondrial membrane (ortholog) NW_004955468 7903438 7914038 + 102011427 AGCD01052015;AGCD01052016;GBCB01022853;XM_005400110 XP_005400167 MODEL 8862066 ncrna LOC102005411 uncharacterized LOC102005411 NW_004955435 20027434 20045778 - 102005411 AGCD01033445;GBDF01117536;XR_261728 MODEL 8951388 ncrna LOC102010581 uncharacterized LOC102010581 NW_004955478 6558216 6561171 + 102010581 AGCD01055900;GBDF01140094;XR_001230864;XR_263703 MODEL 39132055 snorna SNORD18 Small nucleolar RNA SNORD18 39133843 snorna SNORA47 small nucleolar RNA, H/ACA box 47 8881773 protein-coding Ncf4 neutrophil cytosolic factor 4 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); superoxide-generating NADPH oxidase activator activity (ortholog); INVOLVED IN superoxide anion generation (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); autosomal recessive chronic granulomatous disease 3 (ortholog); chronic granulomatous disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endosome membrane (ortholog) NW_004955413 23388456 23405121 + 102022804 AGCD01014330;GBDJ01348708;XM_005379170;XM_013511618 XP_005379227;XP_013367072 MODEL 8727936 protein-coding Prmt8 protein arginine methyltransferase 8 ENCODES a protein that exhibits enzyme binding (ortholog); histone H4 methyltransferase activity (ortholog); identical protein binding (ortholog); INVOLVED IN peptidyl-arginine methylation (ortholog); protein homooligomerization (ortholog); protein methylation (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); glutamatergic synapse (ortholog); nucleus (ortholog) NW_004955413 1323436 1409188 + 102025449 AGCD01013520;AGCD01013521;GBDF01034290;XM_005378717 XP_005378774 MODEL 8960601 pseudo LOC102011014 60S ribosomal protein L32 pseudogene NW_004955422 28865640 28866566 + 102011014 AGCD01023372 MODEL 8917974 protein-coding Ticam2 toll like receptor adaptor molecule 2 ENCODES a protein that exhibits molecular adaptor activity (ortholog); phospholipid binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); defense response to virus (ortholog); negative regulation of chemokine (C-C motif) ligand 5 production (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; Toll-like receptor signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Brain Injuries (ortholog); Coronavirus infectious disease (ortholog); FOUND IN early endosome (ortholog); endoplasmic reticulum (ortholog); endosome (ortholog) NW_004955411 31010373 31042321 - 102003848 AGCD01012265;GBDJ01125148;XM_013510720 XP_013366174 MODEL 8915605 ncrna LOC102017480 uncharacterized LOC102017480 NW_004955506 2406371 2410177 + 102017480 AGCD01065294;GBDF01192849;XR_001231587;XR_264332 MODEL 9065365 protein-coding Lhcgr luteinizing hormone/choriogonadotropin receptor ENCODES a protein that exhibits ATPase binding (ortholog); choriogonadotropin hormone binding (ortholog); choriogonadotropin hormone receptor activity (ortholog); INVOLVED IN activation of adenylate cyclase activity (ortholog); adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphas family; luteinizing hormone signaling pathway; peptide and protein hormone signaling pathway; ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); breast cancer (ortholog); disorder of sexual development (ortholog); FOUND IN centriolar satellite (ortholog); endosome (ortholog); extracellular space (ortholog) NW_004955441 15205883 15263617 - 102023399 AGCD01037244;AGCD01037245;AGCD01037246;GBDJ01116217;XM_005391008;XM_013517564;XM_013517565;XM_013517566;XM_013517567 XP_005391065;XP_013373018;XP_013373019;XP_013373020;XP_013373021 MODEL 8930458 protein-coding Trim72 tripartite motif containing 72 ENCODES a protein that exhibits identical protein binding (ortholog); mitogen-activated protein kinase kinase kinase binding (ortholog); phosphatidylserine binding (ortholog); INVOLVED IN muscle organ development (ortholog); muscle system process (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); sarcolemma (ortholog) NW_004955493 8074521 8091611 + 102004173 AGCD01061260;AGCD01061261;AGCD01061262;AGCD01061263;GBCB01006024;XM_005405311;XM_005405312 XP_005405368;XP_005405369 MODEL 8838056 protein-coding Slc25a34 solute carrier family 25 member 34 INVOLVED IN blastocyst hatching (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Hereditary Pancreatitis (ortholog) NW_004955527 2433577 2437348 - 102009872 AGCD01069436;GBDI01262999;XM_005409861;XM_005409862 XP_005409918;XP_005409919 MODEL 9029858 protein-coding Psma4 proteasome 20S subunit alpha 4 ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Animal Mammary Neoplasms (ortholog); Bloom syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955450 925070 932237 + 102010961 AGCD01042346;GBDI01059858;XM_005393451;XM_005393452;XM_005393453;XM_005393454 XP_005393508;XP_005393509;XP_005393510;XP_005393511 MODEL 9018343 protein-coding Pex11a peroxisomal biogenesis factor 11 alpha ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); peroxisome fission (ortholog); peroxisome membrane biogenesis (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); Chemical and Drug Induced Liver Injury (ortholog); colorectal cancer (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog); protein-containing complex (ortholog) NW_004955416 15527925 15537497 + 102026318 AGCD01017335;GBDI01024439;XM_013512553;XR_001233330;XR_001233331 XP_013368007 MODEL 8769222 protein-coding Pla1a phospholipase A1 member A ENCODES a protein that exhibits phospholipase A1 activity (ortholog); FOUND IN acrosomal membrane (ortholog) NW_004955427 19298004 19334454 + 102020033 AGCD01027365;GBDJ01230379;XM_005386450;XM_005386451 XP_005386507;XP_005386508 MODEL 8745165 protein-coding Rcor2 REST corepressor 2 ENCODES a protein that exhibits enzyme binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955422 21102185 21111974 + 102025371 AGCD01023101;GBDF01277179;XM_005384656;XM_005384657;XM_013514350 XP_005384713;XP_005384714;XP_013369804 MODEL 8820750 protein-coding Pard6b par-6 family cell polarity regulator beta INVOLVED IN protein-containing complex assembly (ortholog); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); bicellular tight junction (ortholog) NW_004955445 7625303 7638652 - 102026367 AGCD01039547;GBCQ01040751;GBCQ01040752;XM_013518368 XP_013373822 MODEL 8756329 protein-coding LOC102015577 vomeronasal type-1 receptor 2-like NW_004955569 946463 947353 - 102015577 AGCD01074628;XM_013509363 XP_013364817 MODEL 9055617 protein-coding Rab33a RAB33A, member RAS oncogene family INVOLVED IN antigen processing and presentation (ortholog); ASSOCIATED WITH 3-hydroxyisobutryl-CoA hydrolase deficiency (ortholog); Auditory Neuropathy (ortholog); autistic disorder (ortholog) NW_004955473 4875230 4891898 - 102009493 AGCD01053961;AGCD01053962;GBDJ01147195;XM_005401246;XM_005401247 XP_005401303;XP_005401304 MODEL 8917253 protein-coding Eml1 EMAP like 1 ENCODES a protein that exhibits microtubule binding (ortholog); tubulin binding (ortholog); INVOLVED IN brain development (ortholog); hematopoietic progenitor cell differentiation (ortholog); microtubule cytoskeleton organization (ortholog); ASSOCIATED WITH congenital nervous system abnormality (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); microtubule (ortholog); microtubule cytoskeleton (ortholog) NW_004955438 20991432 21137570 + 102030477 AGCD01035528;AGCD01035529;GBCB01022439;XM_005390419;XM_005390420;XM_005390421;XM_005390422;XM_005390423;XM_005390424;XM_005390425 XP_005390476;XP_005390477;XP_005390478;XP_005390479;XP_005390480;XP_005390481;XP_005390482 MODEL 39131521 protein-coding SRD5A3 steroid 5 alpha-reductase 3 8864380 ncrna LOC102023276 uncharacterized LOC102023276 NW_004955423 25201905 25208897 - 102023276 AGCD01024058;AGCD01024059;XR_260994 MODEL 8957417 protein-coding Serinc3 serine incorporator 3 ENCODES a protein that exhibits phospholipid scramblase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); plasma membrane phospholipid scrambling (ortholog); positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); Prostatic Neoplasms (ortholog); FOUND IN Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955445 12837616 12868631 + 102018346 AGCD01039763;AGCD01039764;GBDF01003618;XM_005392472 XP_005392529 MODEL 8741885 protein-coding Snx19 sorting nexin 19 INVOLVED IN chondrocyte differentiation (ortholog); dense core granule maturation (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); Jacobsen Syndrome (ortholog); FOUND IN cytoplasm (ortholog) NW_004955412 31747519 31791022 - 102024441 AGCD01013343;AGCD01013344;AGCD01013345;GBDK01128502;XM_005378570;XM_005378571;XM_005378572;XM_013511227 XP_005378627;XP_005378628;XP_005378629;XP_013366681 MODEL 8980514 protein-coding Slc44a1 solute carrier family 44 member 1 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); ethanolamine transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog); ethanolamine transport (ortholog); transmembrane transport (ortholog); ASSOCIATED WITH Childhood-onset Neurodegeneration with Ataxia, Tremor, Optic Atrophy, and Cognitive Decline (ortholog); high grade glioma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955419 21092583 21277294 - 102029297 AGCD01020265;AGCD01020266;AGCD01020267;AGCD01020268;AGCD01020269;AGCD01020270;GBCQ01164971;XM_005382780 XP_005382837 MODEL 8979025 protein-coding Pdcd1 programmed cell death 1 ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN B cell apoptotic process (ortholog); negative regulation of B cell apoptotic process (ortholog); negative regulation of immune response (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); acute myocarditis (ortholog); anogenital venereal wart (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955542 49290 57747 + 102030000 AGCD01071456;GBBH01229661;XM_005411106 XP_005411163 MODEL 39132057 snorna SNORD18 Small nucleolar RNA SNORD18 8845519 protein-coding LOC102006839 zinc finger protein 709-like NW_004955569 1394409 1414793 + 102006839 AGCD01074651;AGCD01074652;AGCD01074653;AGCD01074654;GBDF01150811;XM_005413501 XP_005413558 MODEL 8783238 protein-coding Ptprf protein tyrosine phosphatase receptor type F ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); chondroitin sulfate proteoglycan binding (ortholog); insulin receptor binding (ortholog); INVOLVED IN cell migration (ortholog); homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN insulin signaling pathway; ASSOCIATED WITH Aplasia or Hypoplasia of Breasts and/or Nipples 2 (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); congestive heart failure (ortholog); FOUND IN endosome (ortholog); excitatory synapse (ortholog); growth cone (ortholog) NW_004955537 3096601 3185682 + 102029007 AGCD01070946;AGCD01070947;AGCD01070948;GBDI01341617;XM_005410662;XM_005410663;XM_005410664;XM_005410665;XM_005410670 XP_005410719;XP_005410720;XP_005410721;XP_005410722;XP_005410727 MODEL 8934202 protein-coding Wdr11 WD repeat domain 11 INVOLVED IN cilium assembly (ortholog); head development (ortholog); heart development (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Autosomal Recessive Intellectual Developmental Disorder 78 (ortholog); CHARGE syndrome (ortholog); FOUND IN axoneme (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955551 1733079 1788354 + 102015571 AGCD01072698;AGCD01072699;GBDF01220834;XM_005412176 XP_005412233 MODEL 8891478 protein-coding Rars1 arginyl-tRNA synthetase 1 ENCODES a protein that exhibits arginine binding (ortholog); arginine-tRNA ligase activity (ortholog); ATP binding (ortholog); INVOLVED IN arginyl-tRNA aminoacylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); hypomyelinating leukodystrophy 9 (ortholog); immunodeficiency 40 (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955408 21536426 21574683 + 102011958 AGCD01008554;AGCD01008555;GBDI01169815;XM_005376302 XP_005376359 MODEL 9043097 pseudo LOC102010252 60S ribosomal protein L35a pseudogene NW_004955475 5564528 5564859 + 102010252 AGCD01054922 MODEL 8796350 pseudo LOC102018639 polycomb complex protein BMI-1-like NW_004955529 1100230 1104601 - 102018639 AGCD01069673 MODEL 8799081 ncrna LOC102009475 uncharacterized LOC102009475 NW_004955463 254981 270114 + 102009475 AGCD01049479;GBDF01303373;XR_263138 MODEL 9034434 protein-coding Smad2 SMAD family member 2 ENCODES a protein that exhibits chromatin binding (ortholog); co-SMAD binding (ortholog); disordered domain specific binding (ortholog); INVOLVED IN activin receptor signaling pathway (ortholog); adrenal gland development (ortholog); anterior/posterior pattern specification (ortholog); PARTICIPATES IN activin signaling pathway; altered transforming growth factor-beta Smad dependent signaling pathway; colorectal cancer pathway; ASSOCIATED WITH acromicric dysplasia (ortholog); breast carcinoma (ortholog); cervical cancer (ortholog); FOUND IN activin responsive factor complex (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955402 33131760 33217144 - 102007387 AGCD01000837;AGCD01000838;GBDJ01114312;GBDJ01387571;XM_013510523 XP_013365977 MODEL 8941795 protein-coding LOC102019006 chromosome unknown open reading frame, human C20orf96 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955597 155659 183450 - 102019006 AGCD01076545;AGCD01076546;GBDI01006441;XM_005414713;XM_005414714;XM_013510029;XM_013510030;XM_013510031;XM_013510032 XP_005414770;XP_005414771;XP_013365483;XP_013365484;XP_013365485;XP_013365486 MODEL 9060830 protein-coding Pla2g10 phospholipase A2 group X ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); calcium-dependent phospholipase A2 activity (ortholog); phospholipase A2 activity (ortholog); INVOLVED IN axon guidance (ortholog); cellular response to leukemia inhibitory factor (ortholog); cholesterol homeostasis (ortholog); FOUND IN acrosomal vesicle (ortholog); extracellular space (ortholog) NW_004955442 4208497 4225893 + 102015776 AGCD01037522;AGCD01037523;AGCD01037524;GBCE01002387;XM_005391132 XP_005391189 MODEL 10311750 ncrna LOC106149843 uncharacterized LOC106149843 NW_004955455 4483560 4485286 - 106149843 AGCD01045675;XR_001236277 MODEL 8809579 protein-coding Tpd52l2 TPD52 like 2 ENCODES a protein that exhibits protein homodimerization activity (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN cytoplasm (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955528 371761 389714 - 102028674 AGCD01069526;GBDF01120852;XM_005409929;XM_005409933;XM_005409935;XM_005409939;XM_013507485;XM_013507486 XP_005409986;XP_005409990;XP_005409992;XP_005409996;XP_013362939;XP_013362940 MODEL 8833621 protein-coding Srd5a3 steroid 5 alpha-reductase 3 ENCODES a protein that exhibits 3-oxo-5-alpha-steroid 4-dehydrogenase (NADP+) activity (ortholog); oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor (ortholog); polyprenal reductase activity (ortholog); INVOLVED IN dolichol biosynthetic process (ortholog); dolichol metabolic process (ortholog); dolichol-linked oligosaccharide biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cone dystrophy (ortholog); congenital disorder of glycosylation (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955447 15578661 15588218 - 102007064 AGCD01041060;GBCC01015353;GBCE01134156;XM_005392895 XP_005392952 MODEL 8712595 pseudo LOC102008356 kinetochore-associated protein DSN1 homolog pseudogene NW_004955444 350531 351610 - 102008356 AGCD01038664;XM_005392056 MODEL 8988531 protein-coding Plscr4 phospholipid scramblase 4 ENCODES a protein that exhibits CD4 receptor binding (ortholog); enzyme binding (ortholog); phospholipid scramblase activity (ortholog); INVOLVED IN calcium activated phosphatidylcholine scrambling (ortholog); calcium activated phosphatidylserine scrambling (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH lung small cell carcinoma (ortholog); sensorineural hearing loss (ortholog); FOUND IN nucleus (ortholog); plasma membrane (ortholog) NW_004955474 11299390 11331982 + 102020330 AGCD01054617;AGCD01054618;GBBH01116620;GBDI01075931;XM_005401439 XP_005401496 MODEL 39133328 snrna U4 U4 spliceosomal RNA 8789865 protein-coding Prmt9 protein arginine methyltransferase 9 ENCODES a protein that exhibits protein-arginine N-methyltransferase activity (ortholog); protein-arginine omega-N symmetric methyltransferase activity (ortholog); INVOLVED IN mRNA processing (ortholog); ASSOCIATED WITH methylmalonic acidemia cblA type (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog) NW_004955428 3215335 3243569 - 102012456 AGCD01027650;GBDF01251549;XM_005386669 XP_005386726 MODEL 8943932 protein-coding Brpf3 bromodomain and PHD finger containing 3 ENCODES a protein that exhibits histone H3K14 acetyltransferase activity (ortholog); histone H4K12 acetyltransferase activity (ortholog); histone H4K5 acetyltransferase activity (ortholog); INVOLVED IN positive regulation of DNA replication (ortholog); ASSOCIATED WITH autistic disorder (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN histone acetyltransferase complex (ortholog); MOZ/MORF histone acetyltransferase complex (ortholog); nucleus (ortholog) NW_004955437 3951160 3985133 + 102005966 AGCD01034358;GBCB01061515;GBCE01141854;XM_005389580 XP_005389637 MODEL 8904318 protein-coding Ticrr TOPBP1 interacting checkpoint and replication regulator ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN regulation of DNA-templated DNA replication initiation (ortholog); ASSOCIATED WITH acrocallosal syndrome (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955416 15572789 15615556 - 102027971 AGCD01017335;AGCD01017336;GBDF01278969;XM_005381551;XM_013512555;XM_013512556 XP_005381608;XP_013368009;XP_013368010 MODEL 10225361 ncrna LOC106147013 uncharacterized LOC106147013 NW_004955511 3568568 3608770 + 106147013 AGCD01066468;GBDF01278819;XR_001231709 MODEL 8996811 pseudo LOC102024282 protein slowmo homolog 2 pseudogene NW_004955439 11396392 11398794 + 102024282 AGCD01035905;AGCD01035906 MODEL 8772168 protein-coding Trpm6 transient receptor potential cation channel subfamily M member 6 ENCODES a protein that exhibits calcium ion transmembrane transporter activity (ortholog); magnesium ion transmembrane transporter activity (ortholog); monoatomic cation channel activity (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); magnesium ion transmembrane transport (ortholog); metal ion transport (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); Eye Abnormalities (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); nucleus (ortholog) NW_004955512 4179194 4323523 + 102006059 AGCD01066733;AGCD01066734;AGCD01066735;AGCD01066736;AGCD01066737;AGCD01066738;AGCD01066739;AGCD01066740;AGCD01066741;GBDJ01377962;XM_005408321;XM_013506547 XP_005408378;XP_013362001 MODEL 8891467 pseudo LOC102011828 transcription initiation factor TFIID subunit 13 pseudogene NW_004955402 57682424 57682792 + 102011828 AGCD01001507 MODEL 39133329 snrna U4 U4 spliceosomal RNA 8810723 protein-coding Slc25a35 solute carrier family 25 member 35 ASSOCIATED WITH Cardiac Arrhythmias (ortholog); Diamond-Blackfan anemia (ortholog); dyskeratosis congenita (ortholog); FOUND IN mitochondrion (ortholog) NW_004955467 8618572 8628857 + 102019789 AGCD01051463;GBDK01357239;XM_013522178;XM_013522179;XM_013522180;XM_013522181;XM_013522182 XP_013377632;XP_013377633;XP_013377634;XP_013377635;XP_013377636 MODEL 8967454 ncrna LOC102011431 uncharacterized LOC102011431 NW_004955414 6656760 6678985 + 102011431 AGCD01014926;GBBH01097014;XR_001233094;XR_001233095;XR_001233097;XR_260157 MODEL 8722343 protein-coding Wdr12 WD repeat domain 12 INVOLVED IN maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); Notch signaling pathway (ortholog); ASSOCIATED WITH autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); common variable immunodeficiency 1 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955457 11947816 11970066 + 102030389 AGCD01046996;AGCD01046997;GBDF01016523;XM_005397046;XM_005397047 XP_005397103;XP_005397104 MODEL 8984941 protein-coding Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) ENCODES a protein that exhibits acetylglucosaminyltransferase activity (ortholog); beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity (ortholog); manganese ion binding (ortholog); INVOLVED IN basement membrane organization (ortholog); brain development (ortholog); dentate gyrus development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2O (ortholog); FOUND IN Golgi membrane (ortholog); membrane (ortholog) NW_004955464 12076815 12086961 + 102022683 AGCD01050179;AGCD01050180;GBBH01142608;GBCC01026286;XM_013521599 XP_013377053 MODEL 8897185 ncrna LOC102010253 uncharacterized LOC102010253 NW_004955415 31218654 31219403 - 102010253 AGCD01016671;GBDF01001956;XR_260330 MODEL 8928448 protein-coding LOC102005416 complement C4-A NW_004955437 492806 505554 + 102005416 AGCD01034137;AGCD01034138;GBCE01002333;XM_013516778 XP_013372232 MODEL 41410896 snorna SNORA49 small nucleolar RNA, H/ACA box 49 9013849 ncrna LOC102003674 uncharacterized LOC102003674 NW_004955427 13594699 13599884 + 102003674 AGCD01027253;GBDF01143677;XR_001234373 MODEL 8942709 protein-coding LOC102023277 olfactory receptor 18-like NW_004955495 679418 680405 + 102023277 AGCD01061649;XM_013505087 XP_013360541 MODEL 8751268 pseudo LOC102019011 40S ribosomal protein S17-like NW_004955403 42388219 42400367 - 102019011 AGCD01002751 MODEL 8810186 protein-coding Smad3 SMAD family member 3 ENCODES a protein that exhibits beta-catenin binding (ortholog); bHLH transcription factor binding (ortholog); chromatin binding (ortholog); INVOLVED IN activin receptor signaling pathway (ortholog); adrenal gland development (ortholog); apoptotic process (ortholog); PARTICIPATES IN activin signaling pathway; altered transforming growth factor-beta Smad dependent signaling pathway; colorectal cancer pathway; ASSOCIATED WITH alcoholic cardiomyopathy (ortholog); alcoholic liver cirrhosis (ortholog); Aneurysm (ortholog); FOUND IN chromatin (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955450 8747651 8842003 - 102025963 AGCD01042576;GBCE01054141;XM_005393692;XM_005393694;XM_013518932 XP_005393749;XP_005393751;XP_013374386 MODEL 8970769 protein-coding Serinc4 serine incorporator 4 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955416 10255269 10257996 - 102008411 AGCD01017126;GBDF01198361;XM_013512418 XP_013367872 MODEL 10393522 ncrna LOC106149844 uncharacterized LOC106149844 NW_004955455 14638968 14640091 + 106149844 AGCD01046095;GBDJ01342604;XR_001236283 MODEL 8799786 ncrna LOC102006507 uncharacterized LOC102006507 NW_004955445 17401781 17432794 - 102006507 AGCD01039886;AGCD01039887;AGCD01039888;GBDF01208938;XR_262343;XR_262344 MODEL 8824898 pseudo LOC102017481 B-cell lymphoma/leukemia 10 pseudogene NW_004955427 10006809 10009922 + 102017481 AGCD01027112 MODEL 9019187 protein-coding Lhfpl1 LHFPL tetraspan subfamily member 1 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955490 3156323 3215925 + 102028761 AGCD01060160;AGCD01060161;GBCB01097424;XM_005404629;XM_005404630 XP_005404686;XP_005404687 MODEL 8895308 protein-coding LOC102007967 mitochondrial chaperone BCS1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); mitochondrial respiratory chain complex III assembly (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); Bjornstad syndrome (ortholog); brain disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955453 14762237 14766693 - 102007967 AGCD01044873;GBDK01357365;XM_005395637;XM_005395638;XM_005395639;XM_005395640;XM_013519927;XM_013519928;XM_013519929;XM_013519930 XP_005395694;XP_005395695;XP_005395696;XP_005395697;XP_013375381;XP_013375382;XP_013375383;XP_013375384 MODEL 39132059 snorna SNORD18 Small nucleolar RNA SNORD18 8930592 protein-coding Otud6b OTU deubiquitinase 6B ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); negative regulation of translation (ortholog); positive regulation of translation (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); Intellectual Developmental Disorder with Dysmorphic Facies, Seizures, and Distal Limb Anomalies (ortholog); FOUND IN eukaryotic translation initiation factor 4F complex (ortholog) NW_004955417 7844311 7859032 + 102014045 AGCD01018017;GBBH01057361;XM_005381770 XP_005381827 MODEL 9046160 protein-coding LOC102017485 vomeronasal type-1 receptor 90-like NW_004955429 12349676 12350584 + 102017485 AGCD01028714;XM_005387246 XP_005387303 MODEL 8831141 protein-coding Pex11b peroxisomal biogenesis factor 11 beta ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN peroxisome fission (ortholog); peroxisome organization (ortholog); regulation of peroxisome size (ortholog); ASSOCIATED WITH cataract (ortholog); cataract 46 juvenile-onset (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955568 174770 183078 + 102003497 AGCD01074505;GBDF01044494;GBDK01018814;XM_005413426 XP_005413483 MODEL 8762968 protein-coding Rcor3 REST corepressor 3 ENCODES a protein that exhibits enzyme binding (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955489 1016124 1059795 - 102014908 AGCD01059825;AGCD01059826;GBCB01020600;GBDF01155577;XM_013504486 XP_013359940 MODEL 8866376 protein-coding LOC102012632 olfactory receptor 52L1 NW_004955414 21869937 21870911 - 102012632 AGCD01015436;XM_005380106 XP_005380163 MODEL 39133331 snrna U4 U4 spliceosomal RNA 8820361 ncrna LOC102009476 uncharacterized LOC102009476 NW_004955463 10007303 10028051 - 102009476 AGCD01049804;AGCD01049805;GBDF01223582;XR_263166 MODEL 8876614 protein-coding LOC102015579 chromosome unknown open reading frame, human C1orf35 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); multiple mitochondrial dysfunctions syndrome 3 (ortholog); paraplegia (ortholog) NW_004955581 316424 319109 + 102015579 AGCD01075667;GBDK01091133;XM_005414241 XP_005414298 MODEL 8849141 protein-coding Nck1 NCK adaptor protein 1 ENCODES a protein that exhibits ephrin receptor binding (ortholog); eukaryotic initiation factor eIF2 binding (ortholog); molecular condensate scaffold activity (ortholog); INVOLVED IN actin filament organization (ortholog); antiviral innate immune response (ortholog); cell migration (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); nephrotic syndrome (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955501 1867956 1963091 - 102016727 AGCD01064064;AGCD01064065;GBDF01125073;XM_005406775;XM_005406776;XM_005406777;XM_013505795;XM_013505796 XP_005406832;XP_005406833;XP_005406834;XP_013361249;XP_013361250 MODEL 8939475 pseudo LOC102011433 zinc finger protein 35-like NW_004955414 19831492 19837666 - 102011433 AGCD01015339 MODEL 8866730 protein-coding Pi4ka phosphatidylinositol 4-kinase alpha ENCODES a protein that exhibits 1-phosphatidylinositol 4-kinase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); modulation by host of viral process (ortholog); myelination in peripheral nervous system (ortholog); PARTICIPATES IN inositol metabolic pathway; phosphoinositide metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); CEDNIK syndrome (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN cytoplasm (ortholog); Golgi-associated vesicle membrane (ortholog); plasma membrane (ortholog) NW_004955442 19446955 19594790 + 102025628 AGCD01038060;AGCD01038061;AGCD01038062;AGCD01038063;AGCD01038064;AGCD01038065;AGCD01038066;AGCD01081646;GBDK01126857;XM_005391836;XM_005391837 XP_005391893;XP_005391894 MODEL 8945604 protein-coding LOC102005424 trafficking protein particle complex subunit 6A NW_004955555 2169073 2183696 - 102005424 AGCD01073131;GBCQ01014265;XM_005412499;XM_005412500;XM_005412502;XM_013508760;XM_013508761;XM_013508762;XM_013508763 XP_005412556;XP_005412557;XP_005412559;XP_013364214;XP_013364215;XP_013364216;XP_013364217 MODEL 8820091 protein-coding Ptprg protein tyrosine phosphatase receptor type G ENCODES a protein that exhibits identical protein binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN negative regulation of epithelial cell migration (ortholog); negative regulation of neuron projection development (ortholog); regulation of homophilic cell adhesion (ortholog); ASSOCIATED WITH Stomach Neoplasms (ortholog); FOUND IN extracellular space (ortholog) NW_004955517 3676342 4352909 - 102003052 AGCD01067669;AGCD01067670;AGCD01067671;AGCD01067672;AGCD01067673;AGCD01067674;AGCD01067675;AGCD01067676;AGCD01067677;AGCD01067678;AGCD01067679;AGCD01067680;AGCD01067681;AGCD01067682;AGCD01067683;AGCD01067684;AGCD01067685;AGCD01067686;AGCD01067687;AGCD01067688;AGCD01067689;GBDF01090393;GBDF01090403;XM_013506946 XP_013362400 MODEL 9032975 protein-coding Rsph3 radial spoke head 3 ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN cilium (ortholog) NW_004955439 3510076 3533924 + 102009763 AGCD01035678;GBDF01004160;XM_005415341 XP_005415398 MODEL 9007428 protein-coding Psma5 proteasome 20S subunit alpha 5 ASSOCIATED WITH autistic disorder (ortholog); hereditary spastic paraplegia 63 (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955435 12823137 12845631 - 102026037 AGCD01033168;AGCD01033169;GBBH01061856;XM_005388853;XM_013516454 XP_005388910;XP_013371908 MODEL 8822320 protein-coding Pard6g par-6 family cell polarity regulator gamma PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH Burn-McKeown syndrome (ortholog); chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955402 63374837 63459327 - 102030141 AGCD01001670;AGCD01001671;GBDI01383965;XM_005373129;XM_005373130 XP_005373186;XP_005373187 MODEL 9023876 protein-coding Rars2 arginyl-tRNA synthetase 2, mitochondrial ENCODES a protein that exhibits arginine-tRNA ligase activity (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway; ASSOCIATED WITH cerebellar hypoplasia (ortholog); congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIf (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955411 14470479 14527895 - 102028171 AGCD01011920;AGCD01011921;GBDJ01276669;XM_005377731 XP_005377788 MODEL 8785742 protein-coding Brs3 bombesin receptor subtype 3 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Christianson syndrome (ortholog); FOUND IN neuronal cell body (ortholog) NW_004955489 8627569 8631810 - 102013423 AGCD01060021;XM_005404590 XP_005404647 MODEL 8922352 protein-coding Tie1 tyrosine kinase with immunoglobulin like and EGF like domains 1 INVOLVED IN aortic valve morphogenesis (ortholog); blood vessel development (ortholog); branching involved in lymph vessel morphogenesis (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); Lymphatic Malformation 11 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955537 2894913 2914284 + 102024611 AGCD01070939;GBDK01005466;XM_005410646;XM_005410647 XP_005410703;XP_005410704 MODEL 8839333 ncrna LOC102024285 uncharacterized LOC102024285 NW_004955441 15676243 15697570 + 102024285 AGCD01037251;GBCB01089296;XR_001235297;XR_262085;XR_262086;XR_262087 MODEL 9012513 pseudo LOC102011829 cytochrome c oxidase subunit 7A2, mitochondrial pseudogene NW_004955402 1161682 1162083 - 102011829 AGCD01000049;XM_005373139 MODEL 8984071 protein-coding LOC102017490 mitotic spindle-associated MMXD complex subunit MIP18-like NW_004955433 23508419 23541261 - 102017490 AGCD01031972;AGCD01031973;AGCD01031974;AGCD01031975;AGCD01031976;XM_005388515 XP_005388572 MODEL 8888759 protein-coding LOC102010255 deleted in malignant brain tumors 1 protein NW_004955477 966067 1052359 + 102010255 AGCD01055497;AGCD01055498;AGCD01055499;AGCD01055500;AGCD01055501;AGCD01055502;GBDF01198016;XM_013503021 XP_013358475 MODEL 8922549 protein-coding Tpd52l3 TPD52 like 3 ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog) NW_004955434 10291418 10293330 + 102012997 AGCD01032336;XM_005388749 XP_005388806 MODEL 8990026 protein-coding Pdcd10 programmed cell death 10 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN cellular response to anoxia (ortholog); cellular response to leukemia inhibitory factor (ortholog); establishment of Golgi localization (ortholog); ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); cavernous hemangioma (ortholog); Central Nervous System Neoplasms (ortholog); FOUND IN cell periphery (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955448 16866577 16887215 - 102012142 AGCD01041703;GBCB01075940;GBCC01008530;XM_013518655 XP_013374109 MODEL 9062386 protein-coding Srebf1 sterol regulatory element binding transcription factor 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cellular response to fatty acid (ortholog); cellular response to insulin stimulus (ortholog); cellular response to starvation (ortholog); PARTICIPATES IN mTOR signaling pathway; sterol regulatory element-binding protein signaling pathway; ASSOCIATED WITH alcoholic hepatitis (ortholog); atherosclerosis (ortholog); autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); membrane (ortholog) NW_004955577 171425 183669 + 102016535 AGCD01075383;AGCD01075384;GBCE01033218;XM_013509620 XP_013365074 MODEL 39133333 snrna U4 U4 spliceosomal RNA 8989914 pseudo LOC102008359 erythrocyte band 7 integral membrane protein pseudogene NW_004955572 890630 891453 - 102008359 AGCD01074927 MODEL 8785570 pseudo LOC102003677 protein phosphatase 1 regulatory subunit 42-like NW_004955511 3024029 3025033 - 102003677 AGCD01066439 MODEL 8734890 protein-coding LOC102006842 arylacetamide deacetylase-like NW_004955448 3066739 3077788 + 102006842 AGCD01041301;GBDJ01144113;XM_005393038 XP_005393095 MODEL 10278462 ncrna LOC106149845 uncharacterized LOC106149845 NW_004955455 1711508 1713780 - 106149845 AGCD01045582;GBDF01303820;XR_001236286 MODEL 8938923 protein-coding Plscr5 phospholipid scramblase family member 5 NW_004955474 10855958 10903801 + 102017654 AGCD01054604;GBDF01041495;XM_005401429;XM_013502715 XP_005401486;XP_013358169 MODEL 8933989 protein-coding Serinc5 serine incorporator 5 ENCODES a protein that exhibits acetyltransferase activator activity (ortholog); phospholipid scramblase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); myelination (ortholog); phosphatidylserine metabolic process (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955418 29502562 29573966 + 102006460 AGCD01019468;AGCD01019469;AGCD01019470;GBBH01115821;GBCB01111527;XM_013513014 XP_013368468 MODEL 10144608 ncrna LOC106147014 uncharacterized LOC106147014 NW_004955407 31189453 31193415 + 106147014 AGCD01007642;XR_001231712 MODEL 39133334 snrna U4 U4 spliceosomal RNA 8773794 protein-coding Pi4kb phosphatidylinositol 4-kinase beta ENCODES a protein that exhibits 1-phosphatidylinositol 4-kinase activity (ortholog); 14-3-3 protein binding (ortholog); INVOLVED IN inner ear development (ortholog); lysosome organization (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 87 (ortholog); Coronavirus infectious disease (ortholog); Dravet syndrome (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955588 648180 679374 - 102030020 AGCD01076118;GBCC01025771;XM_005414515;XM_005414516;XM_013509921;XM_013509922 XP_005414572;XP_005414573;XP_013365375;XP_013365376 MODEL 8729827 pseudo LOC102021561 elongation factor 1-beta pseudogene NW_004955420 8719850 8724682 - 102021561 AGCD01020731 MODEL 8866975 pseudo LOC102003679 glutamine synthetase pseudogene NW_004955431 4833847 4835235 + 102003679 AGCD01030014 MODEL 8809183 protein-coding Eml2 EMAP like 2 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); microtubule binding (ortholog); tubulin binding (ortholog); INVOLVED IN negative regulation of microtubule polymerization (ortholog); regulation of microtubule nucleation (ortholog); FOUND IN mitotic spindle (ortholog) NW_004955574 106788 135289 - 102014957 AGCD01075084;AGCD01075085;GBDF01043668;XM_005413789 XP_005413846 MODEL 9043529 protein-coding Trpm7 transient receptor potential cation channel subfamily M member 7 ENCODES a protein that exhibits actin binding (ortholog); calcium channel activity (ortholog); kinase activity (ortholog); INVOLVED IN actomyosin structure organization (ortholog); calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); ASSOCIATED WITH adenoma (ortholog); amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis-parkinsonism/dementia complex 1 (ortholog); FOUND IN cytoplasmic vesicle (ortholog); neuronal cell body (ortholog); nucleus (ortholog) NW_004955409 3690722 3787139 + 102028060 AGCD01009259;AGCD01009260;GBDF01237858;XM_005376661;XM_005376664;XM_005376665 XP_005376718;XP_005376721;XP_005376722 MODEL 8995472 protein-coding Slc25a36 solute carrier family 25 member 36 ENCODES a protein that exhibits pyrimidine nucleotide transmembrane transporter activity (ortholog); INVOLVED IN mitochondrial genome maintenance (ortholog); mitochondrion organization (ortholog); pyrimidine nucleotide transport (ortholog); ASSOCIATED WITH familial hyperinsulinemic hypoglycemia 8 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955508 4699668 4721198 - 102030104 AGCD01065885;GBCQ01035640;GBDI01008293;XM_013506278 XP_013361732 MODEL 9034545 protein-coding LOC102011016 guanylate-binding protein 4 NW_004955423 4931941 4946708 + 102011016 AGCD01023550;GBBH01026001;GBCQ01139851;XM_013514413 XP_013369867 MODEL 8785958 protein-coding Wdr13 WD repeat domain 13 ENCODES a protein that exhibits promoter-specific chromatin binding (ortholog); INVOLVED IN negative regulation of type B pancreatic cell proliferation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); esophageal atresia (ortholog); FOUND IN centriolar satellite (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955543 182279 190435 + 102022017 AGCD01071563;GBDJ01277750;XM_005411270;XM_005411271 XP_005411327;XP_005411328 MODEL 9047503 protein-coding Pomgnt2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) ENCODES a protein that exhibits acetylglucosaminyltransferase activity (ortholog); protein O-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN neuron migration (ortholog); protein O-linked glycosylation (ortholog); protein O-linked mannosylation (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); exotropia (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955420 27884262 27899293 + 102014572 AGCD01021462;GBCB01098321;XM_005383498;XM_005383499;XM_005383501;XM_013513533;XM_013513534;XR_001233753;XR_001233754;XR_001233755;XR_001233756;XR_001233757;XR_001233758;XR_001233759 XP_005383555;XP_005383556;XP_005383558;XP_013368987;XP_013368988 MODEL 9010431 protein-coding LOC102012634 olfactory receptor 481 NW_004955414 23630286 23633450 + 102012634 AGCD01015508;AGCD01015509;XM_005380206 XP_005380263 MODEL 9043490 protein-coding Brsk1 BR serine/threonine kinase 1 ENCODES a protein that exhibits gamma-tubulin binding (ortholog); magnesium ion binding (ortholog); molecular function inhibitor activity (ortholog); INVOLVED IN associative learning (ortholog); axonogenesis (ortholog); central nervous system neuron differentiation (ortholog); FOUND IN cell junction (ortholog); centrosome (ortholog); cholinergic synapse (ortholog) NW_004955567 924728 943092 - 102027122 AGCD01074446;AGCD01074447;GBCE01016557;GBDJ01062535;XM_013509249 XP_013364703 MODEL 8743113 protein-coding Tifa TRAF interacting protein with forkhead associated domain INVOLVED IN cytoplasmic pattern recognition receptor signaling pathway (ortholog); innate immune response (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH aniridia (ortholog); Axenfeld-Rieger syndrome type 1 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955457 14444811 14460168 + 102020529 AGCD01047073;GBDF01293417;XM_005397102;XM_005397103;XR_262952;XR_262953 XP_005397159;XP_005397160 MODEL 39132794 snorna SNORA50A small nucleolar RNA, H/ACA box 50A 8728857 protein-coding Slc44a2 solute carrier family 44 member 2 (CTL2 blood group) ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); ethanolamine transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog); ethanolamine transport (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); familial hypercholesterolemia (ortholog); immunodeficiency 35 (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog); plasma membrane (ortholog) NW_004955495 1780766 1804944 + 102008235 AGCD01061730;AGCD01061731;GBDK01014784;XM_005405608;XM_005405609 XP_005405665;XP_005405666 MODEL 8917431 ncrna LOC102011434 uncharacterized LOC102011434 NW_004955470 12696997 12745344 + 102011434 AGCD01052936;AGCD01052937;GBCE01144649;XR_001237028;XR_001237029;XR_263507 MODEL 8879373 pseudo LOC102006508 heterogeneous nuclear ribonucleoprotein K pseudogene NW_004955445 18587531 18589305 + 102006508 AGCD01039906 MODEL 8703607 protein-coding LOC102007969 maestro heat-like repeat-containing protein family member 7 NW_004955406 37107660 37135900 + 102007969 AGCD01006571;GBDF01021853;XM_013522084 XP_013377538 MODEL 39133356 snorna SNORA50A small nucleolar RNA, H/ACA box 50A 9019729 protein-coding Pdcd11 programmed cell death 11 ENCODES a protein that exhibits NF-kappaB binding (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955485 7110704 7152301 - 102006667 AGCD01058635;AGCD01058636;AGCD01058637;GBDJ01232953;XM_005403810;XM_005403811 XP_005403867;XP_005403868 MODEL 8730345 protein-coding Otud7a OTU deubiquitinase 7A ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN protein K11-linked deubiquitination (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 15q11.2 deletion syndrome (ortholog) NW_004955416 30244875 30427829 - 102020664 AGCD01017684;AGCD01017685;AGCD01017686;AGCD01017687;AGCD01017688;AGCD01017689;AGCD01017690;GBBH01160554;GBDJ01115750;XM_013512651 XP_013368105 MODEL 8977058 protein-coding Rab33b RAB33B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GTPase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); intra-Golgi vesicle-mediated transport (ortholog); negative regulation of constitutive secretory pathway (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH genetic disease (ortholog); Smith-McCort dysplasia (ortholog); Smith-McCort dysplasia 2 (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi lumen (ortholog); Golgi membrane (ortholog) NW_004955428 4192357 4211740 - 102017898 AGCD01027670;GBDF01144317;XM_005386688 XP_005386745 MODEL 8805780 protein-coding Rhoa ras homolog family member A ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); alpha-beta T cell lineage commitment (ortholog); androgen receptor signaling pathway (ortholog); PARTICIPATES IN calcium signaling pathway via the calcium-sensing receptor; E-cadherin signaling pathway; eicosanoid signaling pathway; ASSOCIATED WITH Abnormalities, Drug-Induced (ortholog); acute myocardial infarction (ortholog); Aicardi-Goutieres Syndrome 1 (ortholog); FOUND IN apical junction complex (ortholog); axon (ortholog); cell cortex (ortholog) NW_004955532 1300821 1347453 - 102012473 AGCD01070177;AGCD01070178;AGCD01070179;GBDF01010839;XM_005410198;XM_005410200 XP_005410255;XP_005410257 MODEL 8916974 protein-coding Rcsd1 RCSD domain containing 1 ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN cellular hyperosmotic response (ortholog); skeletal muscle contraction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 25 (ortholog) NW_004955462 9321624 9383962 - 102022892 AGCD01049337;GBDI01185598;XM_005398223;XM_005398224;XM_013521437 XP_005398280;XP_005398281;XP_013376891 MODEL 9018113 protein-coding Trim8 tripartite motif containing 8 ENCODES a protein that exhibits identical protein binding (ortholog); mitogen-activated protein kinase kinase kinase binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN canonical NF-kappaB signal transduction (ortholog); host-mediated suppression of symbiont invasion (ortholog); innate immune response (ortholog); ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); electroclinical syndrome (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955485 7784625 7798131 - 102013832 AGCD01058676;AGCD01058677;AGCD01058678;GBBH01035373;GBDK01003830;XM_005403830 XP_005403887 MODEL 8890048 ncrna LOC102021564 uncharacterized LOC102021564 NW_004955422 29420063 29427084 + 102021564 AGCD01023393;GBDF01255637;XR_001233889 MODEL 8903020 ncrna LOC102017493 uncharacterized LOC102017493 NW_004955435 11747839 11756443 + 102017493 AGCD01033118;GBDI01366443;XR_261678 MODEL 9049102 pseudo LOC102009479 60S ribosomal protein L26-like NW_004955466 1763067 1764140 + 102009479 AGCD01050717 MODEL 8739650 ncrna LOC102019012 uncharacterized LOC102019012 NW_004955403 46753348 46754897 + 102019012 AGCD01002867;GBDF01016883;XR_259245 MODEL 8718196 protein-coding Nck2 NCK adaptor protein 2 ENCODES a protein that exhibits phosphotyrosine residue binding (ortholog); protein-containing complex binding (ortholog); scaffold protein binding (ortholog); INVOLVED IN actin filament organization (ortholog); cell migration (ortholog); dendritic spine development (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; insulin signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); Alzheimer's disease (ortholog); nephrotic syndrome (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); postsynaptic density (ortholog) NW_004955470 10487962 10593046 + 102030183 AGCD01052871;AGCD01052872;GBDF01223303;XM_005400789 XP_005400846 MODEL 9013620 protein-coding Smad4 SMAD family member 4 ENCODES a protein that exhibits chromatin binding (ortholog); collagen binding (ortholog); DNA binding (ortholog); INVOLVED IN adrenal gland development (ortholog); anatomical structure morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); PARTICIPATES IN altered transforming growth factor-beta Smad dependent signaling pathway; Bone morphogenetic proteins signaling pathway; colorectal cancer pathway; ASSOCIATED WITH 17-beta hydroxysteroid dehydrogenase 3 deficiency (ortholog); Acro-Osteolysis (ortholog); aortic disease (ortholog); FOUND IN activin responsive factor complex (ortholog); centrosome (ortholog); chromatin (ortholog) NW_004955402 35956080 36001746 + 102023215 AGCD01000909;AGCD01000910;GBCB01040153;XM_013510741;XM_013510745;XR_001232810 XP_013366195;XP_013366199 MODEL 8937414 pseudo LOC102005429 uncharacterized LOC102005429 NW_004955585 307477 456009 + 102005429 AGCD01075996;AGCD01075997 MODEL 9061920 protein-coding Srebf2 sterol regulatory element binding transcription factor 2 ENCODES a protein that exhibits C-8 sterol isomerase activity (ortholog); chromatin binding (ortholog); DNA binding (ortholog); INVOLVED IN cellular response to low-density lipoprotein particle stimulus (ortholog); cellular response to starvation (ortholog); cholesterol homeostasis (ortholog); PARTICIPATES IN altered p53 signaling pathway; sterol regulatory element-binding protein signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); atherosclerosis (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); endoplasmic reticulum (ortholog) NW_004955413 27271717 27326655 + 102026308 AGCD01014500;AGCD01014501;GBDF01048386;XM_005379374 XP_005379431 MODEL 8880268 protein-coding Brsk2 BR serine/threonine kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); ATPase binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); axonogenesis (ortholog); central nervous system neuron differentiation (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); distal axon (ortholog) NW_004955476 10911515 10951544 - 102003123 AGCD01055431;GBDF01194489;XM_013502987;XM_013502988;XM_013502989;XM_013502990;XM_013502991;XM_013502992;XM_013502993;XM_013502994;XR_001230801 XP_013358441;XP_013358442;XP_013358443;XP_013358444;XP_013358445;XP_013358446;XP_013358447;XP_013358448 MODEL 8857812 protein-coding Wdr17 WD repeat domain 17 ASSOCIATED WITH Liver Neoplasms (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955403 31559972 31658899 - 102017620 AGCD01002421;AGCD01002422;GBDK01228794;XM_005373519;XM_005373520;XM_005373521 XP_005373576;XP_005373577;XP_005373578 MODEL 8858319 protein-coding Tigar TP53 induced glycolysis regulatory phosphatase ENCODES a protein that exhibits fructose-2,6-bisphosphate 2-phosphatase activity (ortholog); INVOLVED IN cardiac muscle cell apoptotic process (ortholog); cellular response to cobalt ion (ortholog); cellular response to hypoxia (ortholog); ASSOCIATED WITH episodic ataxia type 1 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial outer membrane (ortholog) NW_004955413 2129719 2153873 + 102029277 AGCD01013540;AGCD01013541;GBDF01122114;XM_005378727;XM_005378728 XP_005378784;XP_005378785 MODEL 8964435 protein-coding Pla2g12a phospholipase A2 group XIIA ENCODES a protein that exhibits phospholipase A2 activity (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955496 557379 568100 + 102025924 AGCD01062235;GBDK01017467;XM_005406188 XP_005406245 MODEL 8719129 protein-coding LOC102006846 peptidoglycan recognition protein 3 NW_004955592 116878 131316 + 102006846 AGCD01076300;GBCQ01082261;XM_005414605;XM_013509976;XM_013509977 XP_005414662;XP_013365430;XP_013365431 MODEL 8940082 ncrna LOC102006510 uncharacterized LOC102006510 NW_004955576 595097 604134 + 102006510 AGCD01075295;AGCD01075296;GBDF01017473;XR_001232460;XR_265072 MODEL 8711742 protein-coding Pltp phospholipid transfer protein ENCODES a protein that exhibits ceramide binding (ortholog); cerebroside transfer activity (ortholog); cholesterol transfer activity (ortholog); INVOLVED IN ceramide transport (ortholog); flagellated sperm motility (ortholog); glycolipid transport (ortholog); PARTICIPATES IN reverse cholesterol transport pathway; ASSOCIATED WITH adenosine deaminase deficiency (ortholog); atherosclerosis (ortholog); Coronary Disease (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog); high-density lipoprotein particle (ortholog) NW_004955445 11384723 11399217 + 102026050 AGCD01039689;AGCD01039690;GBCE01006971;XM_005392402 XP_005392459 MODEL 8705466 pseudo LOC102024286 olfactory receptor 11G2-like NW_004955550 750775 751537 + 102024286 AGCD01072520 MODEL 8758171 protein-coding LOC102011830 leucine-rich repeat-containing protein 37A3-like NW_004955651 5178 17838 + 102011830 AGCD01077802;AGCD01077803;AGCD01077804;AGCD01077805;AGCD01077806;AGCD01077807;AGCD01077808;GBDF01009797;XM_013510174 XP_013365628 MODEL 8735313 pseudo LOC102023278 uncharacterized LOC102023278 NW_004955500 6475946 6492522 - 102023278 AGCD01063882;AGCD01063883 MODEL 9013310 ncrna LOC102010258 uncharacterized LOC102010258 NW_004955416 28137227 28141716 + 102010258 AGCD01017625;GBDF01281711;XR_260429 MODEL 10218927 protein-coding Rcvrn recoverin ENCODES a protein that exhibits calcium ion binding (ortholog); INVOLVED IN phototransduction (ortholog); regulation of calcium ion transport (ortholog); visual perception (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; visual phototransduction pathway; ASSOCIATED WITH congenital myopathy 6 (ortholog); FOUND IN dendrite (ortholog) NW_004955467 7220237 7236450 + 106146237 AGCD01051431;GBDK01129198;XM_013522133 XP_013377587 MODEL 8999574 protein-coding Lhfpl2 LHFPL tetraspan subfamily member 2 INVOLVED IN development of primary female sexual characteristics (ortholog); development of primary male sexual characteristics (ortholog); positive regulation of fertilization (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Hermansky-Pudlak syndrome 2 (ortholog); IgA glomerulonephritis (ortholog) NW_004955425 22398503 22556667 + 102014585 AGCD01025820;AGCD01025821;AGCD01025822;GBDF01029543;GBDF01277818;XM_005386018;XM_005386019 XP_005386075;XP_005386076 MODEL 8782289 protein-coding LOC102021565 zinc finger protein 699 NW_004955495 832127 842376 - 102021565 AGCD01061657;GBDJ01173724;XM_005405565 XP_005405622 MODEL 9039588 ncrna LOC102010585 uncharacterized LOC102010585 NW_004955418 15889079 15907996 + 102010585 AGCD01019113;GBDF01085813;XR_001233526;XR_001233527;XR_260559 MODEL 8906016 protein-coding LOC102018640 melanoma-associated antigen B1-like NW_004955531 724330 725875 + 102018640 AGCD01070007;XM_005410133 XP_005410190 MODEL 9003816 ncrna LOC102008361 uncharacterized LOC102008361 NW_004955448 3629090 3639590 + 102008361 AGCD01041336;XR_001235764;XR_262459 MODEL 8881358 protein-coding Trim9 tripartite motif containing 9 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein homodimerization activity (ortholog); SNARE binding (ortholog); INVOLVED IN negative regulation of calcium ion-dependent exocytosis (ortholog); negative regulation of SNARE complex assembly (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); presynaptic cytosol (ortholog) NW_004955409 11837717 11946718 + 102015811 AGCD01009529;AGCD01009530;GBDF01209690;XM_005376796;XM_005376797;XM_005376798;XM_005376799;XM_005376802;XM_013510331 XP_005376853;XP_005376854;XP_005376855;XP_005376856;XP_005376859;XP_013365785 MODEL 8922520 protein-coding Rsph4a radial spoke head component 4A INVOLVED IN axoneme assembly (ortholog); cilium movement (ortholog); epithelial cilium movement involved in extracellular fluid movement (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); body dysmorphic disorder (ortholog); bronchiectasis (ortholog); FOUND IN 9+2 motile cilium (ortholog); axoneme (ortholog); radial spoke head (ortholog) NW_004955436 30638 43581 - 102006069 AGCD01033530;GBDK01359557;XM_005389115;XM_013516647;XM_013516648;XM_013516649 XP_005389172;XP_013372101;XP_013372102;XP_013372103 MODEL 8876979 protein-coding Pex11g peroxisomal biogenesis factor 11 gamma INVOLVED IN peroxisome fission (ortholog); regulation of peroxisome size (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH hereditary spastic paraplegia 39 (ortholog); mucolipidosis type IV (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog); protein-containing complex (ortholog) NW_004955563 1737560 1743854 + 102005314 AGCD01074160;GBDF01082696;XM_005413190;XM_005413191;XM_005413192;XM_013509150 XP_005413247;XP_005413248;XP_005413249;XP_013364604 MODEL 8921114 protein-coding Parg poly(ADP-ribose) glycohydrolase ENCODES a protein that exhibits chromatin binding (ortholog); poly(ADP-ribose) glycohydrolase activity (ortholog); INVOLVED IN ATP generation from poly-ADP-D-ribose (ortholog); detection of bacterium (ortholog); DNA damage response (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH borna disease (ortholog); brain infarction (ortholog); Cockayne syndrome B (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955556 435264 539935 + 102026268 AGCD01073175;AGCD01073176;GBDF01089037;XM_005412559;XM_005412563;XM_013508787;XM_013508788 XP_005412616;XP_005412620;XP_013364241;XP_013364242 MODEL 8805014 protein-coding Pdcd1lg2 programmed cell death 1 ligand 2 INVOLVED IN negative regulation of activated T cell proliferation (ortholog); negative regulation of interleukin-10 production (ortholog); negative regulation of T cell proliferation (ortholog); ASSOCIATED WITH autoimmune hepatitis (ortholog); chromosome 9p deletion syndrome (ortholog); Coxsackievirus Infections (ortholog) NW_004955434 9540047 9559335 + 102011356 AGCD01032305;XM_013516295 XP_013371749 MODEL 8915768 protein-coding Serp1 stress associated endoplasmic reticulum protein 1 INVOLVED IN endoplasmic reticulum unfolded protein response (ortholog); glucose metabolic process (ortholog); insulin secretion (ortholog); ASSOCIATED WITH glycogen storage disease XV (ortholog); FOUND IN cytoplasmic microtubule (ortholog) NW_004955448 1738242 1742807 - 102024738 AGCD01041266;AGCD01041267;GBCB01088573;GBDF01046142;XM_005393009 XP_005393066 MODEL 8815403 protein-coding Pianp PILR alpha associated neural protein ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN cerebellum development (ortholog); dentate gyrus development (ortholog); gamma-aminobutyric acid signaling pathway (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); FOUND IN basolateral plasma membrane (ortholog); presynapse (ortholog) NW_004955413 4309104 4314961 - 102026734 AGCD01013604;GBDF01145709;XM_005378816;XM_005378817;XM_013511343 XP_005378873;XP_005378874;XP_013366797 MODEL 8823950 protein-coding Rasa1 RAS p21 protein activator 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); GTPase binding (ortholog); kinase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); blood vessel morphogenesis (ortholog); cellular response to epidermal growth factor stimulus (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; insulin signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); arteriovenous malformation (ortholog); basal cell carcinoma (ortholog); FOUND IN nuclear membrane (ortholog); plasma membrane (ortholog); ruffle (ortholog) NW_004955418 23807740 23897699 - 102008221 AGCD01019313;AGCD01019314;GBDI01008697;GBDK01184895;XM_005382300 XP_005382357 MODEL 8990611 protein-coding Trpm8 transient receptor potential cation channel subfamily M member 8 ENCODES a protein that exhibits calcium channel activity (ortholog); identical protein binding (ortholog); monoatomic ion channel activity (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); intracellular calcium ion homeostasis (ortholog); ASSOCIATED WITH Joubert syndrome 22 (ortholog); migraine (ortholog); migraine without aura (ortholog); FOUND IN external side of plasma membrane (ortholog); membrane (ortholog); membrane raft (ortholog) NW_004955453 2185534 2265261 - 102004035 AGCD01044623;AGCD01044624;GBDF01103492;XM_005395332 XP_005395389 MODEL 8725557 protein-coding Eml3 EMAP like 3 INVOLVED IN mitotic metaphase chromosome alignment (ortholog); regulation of mitotic spindle assembly (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); retinitis pigmentosa (ortholog); FOUND IN cytoplasm (ortholog); microtubule cytoskeleton (ortholog); midbody (ortholog) NW_004955599 580203 587268 + 102015584 AGCD01076660;GBCE01002611;XM_013510059;XM_013510060 XP_013365513;XP_013365514 MODEL 8734439 protein-coding Slc25a37 solute carrier family 25 member 37 ENCODES a protein that exhibits ferrous iron transmembrane transporter activity (ortholog); iron ion transmembrane transporter activity (ortholog); INVOLVED IN iron import into the mitochondrion (ortholog); positive regulation of hemoglobin biosynthetic process (ortholog); PARTICIPATES IN iron uptake pathway; ASSOCIATED WITH anemia (ortholog); Conotruncal Cardiac Defects (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955403 46697560 46739082 + 102019559 AGCD01002866;AGCD01002867;GBDF01004000;XM_005373702;XM_013514004;XM_013514005 XP_005373759;XP_013369458;XP_013369459 MODEL 8936301 protein-coding LOC102015580 myosin regulatory light chain 12B NW_004955402 7237291 7251530 - 102015580 AGCD01000168;AGCD01000169;GBCE01001461;XM_005372655 XP_005372712 MODEL 39132694 snorna SNORD20 small nucleolar RNA, C/D box 20 8893790 pseudo LOC102012636 40S ribosomal protein S2 pseudogene NW_004955472 1057016 1058005 - 102012636 AGCD01053370 MODEL 8752654 protein-coding Tpgs1 tubulin polyglutamylase complex subunit 1 ENCODES a protein that exhibits microtubule binding (ortholog); tubulin binding (ortholog); tubulin-glutamic acid ligase activity (ortholog); INVOLVED IN adult behavior (ortholog); chemical synaptic transmission (ortholog); protein polyglutamylation (ortholog); FOUND IN centrosome (ortholog) NW_004955495 7181907 7189726 - 102024585 AGCD01062124;GBDF01187983;XM_005406039 XP_005406096 MODEL 9049183 ncrna LOC102011435 uncharacterized LOC102011435 NW_004955414 23356883 23359067 - 102011435 AGCD01015497;XR_260190 MODEL 8742920 ncrna LOC102010261 uncharacterized LOC102010261 NW_004955482 6580525 6586861 - 102010261 AGCD01057403;XR_263839 MODEL 9023214 protein-coding Rasa2 RAS p21 protein activator 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); melanoma (ortholog); Noonan syndrome (ortholog) NW_004955508 4097455 4199954 - 102029422 AGCD01065862;GBDK01323932;XM_013506264 XP_013361718 MODEL 8739978 protein-coding LOC102007971 keratin-associated protein 20-2-like NW_004955407 30174961 30175134 + 102007971 AGCD01007628;XM_005375643 XP_005375700 MODEL 10267272 ncrna LOC106147015 uncharacterized LOC106147015 NW_004955511 5730280 5731245 + 106147015 AGCD01066578;GBDF01260283;XR_001231713 MODEL 41410897 snorna SNORA52 small nucleolar RNA, H/ACA box 52 39133335 snrna U4 U4 spliceosomal RNA 8908763 protein-coding Psma6 proteasome 20S subunit alpha 6 ENCODES a protein that exhibits NF-kappaB binding (ortholog); RNA binding (ortholog); INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); proteolysis involved in protein catabolic process (ortholog); regulation of inflammatory response (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); ectodermal dysplasia and immunodeficiency 2 (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955409 25751578 25787533 - 102030047 AGCD01010134;AGCD01010135;AGCD01010136;AGCD01010137;AGCD01010138;GBDF01006465;XM_005376923;XM_005376924 XP_005376980;XP_005376981 MODEL 8845859 protein-coding Lhfpl3 LHFPL tetraspan subfamily member 3 ASSOCIATED WITH O'Donnell-Luria-Rodan Syndrome (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955410 9121854 9633760 + 102019149 AGCD01010759;AGCD01010760;AGCD01010761;AGCD01010762;AGCD01010763;AGCD01010764;AGCD01010765;AGCD01010766;AGCD01010767;AGCD01010768;GBCQ01019245;XM_005377238;XM_005377239 XP_005377295;XP_005377296 MODEL 9017220 protein-coding Smad5 SMAD family member 5 ENCODES a protein that exhibits DEAD/H-box RNA helicase binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN BMP signaling pathway (ortholog); bone development (ortholog); cardiac muscle contraction (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH Cocaine-Related Disorders (ortholog); familial adenomatous polyposis 1 (ortholog); granulosa cell tumor (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955408 31183727 31228355 + 102014874 AGCD01008822;AGCD01008823;GBCE01108524;XM_013506828 XP_013362282 MODEL 8959247 ncrna LOC102008363 uncharacterized LOC102008363 NW_004955449 1293468 1297009 + 102008363 AGCD01041795;GBDF01187862;XR_262482 MODEL 9029793 pseudo LOC102006849 RNA-binding protein FUS-like NW_004955402 44011709 44055168 + 102006849 AGCD01001085;AGCD01001086 MODEL 8726272 protein-coding Otud7b OTU deubiquitinase 7B ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type peptidase activity (ortholog); K48-linked deubiquitinase activity (ortholog); INVOLVED IN in utero embryonic development (ortholog); mucosal immune response (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH cataract 46 juvenile-onset (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955413 758098 812605 + 102019900 AGCD01013490;AGCD01013491;GBDF01086853;XM_005378701;XM_005378702;XM_005378703;XM_005378704 XP_005378758;XP_005378759;XP_005378760;XP_005378761 MODEL 8979326 protein-coding Rhob ras homolog family member B ENCODES a protein that exhibits GDP binding (ortholog); INVOLVED IN cell adhesion (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to ionizing radiation (ortholog); ASSOCIATED WITH Avian Sarcoma (ortholog); breast cancer (ortholog); cerebral palsy (ortholog); FOUND IN cleavage furrow (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955469 2964968 2966998 + 102015099 AGCD01052289;GBCB01076295;GBCQ01002704;XM_005400352 XP_005400409 MODEL 8819076 ncrna LOC102024291 uncharacterized LOC102024291 NW_004955564 1497990 1500048 - 102024291 AGCD01074225;GBDF01014269;XR_265022 MODEL 8782075 pseudo LOC102011017 60S ribosomal protein L7 pseudogene NW_004955423 15037609 15043726 + 102011017 AGCD01023788;AGCD01023789 MODEL 8798305 protein-coding Prnd prion like protein doppel ENCODES a protein that exhibits copper ion binding (ortholog); INVOLVED IN acrosome reaction (ortholog); intracellular copper ion homeostasis (ortholog); single fertilization (ortholog); ASSOCIATED WITH Huntington's disease-like 1 (ortholog); Inosine Triphosphatase Deficiency (ortholog); pantothenate kinase-associated neurodegeneration (ortholog); FOUND IN external side of plasma membrane (ortholog) NW_004955415 15469500 15474817 + 102008218 AGCD01016345;GBDF01009044;XM_005380819 XP_005380876 MODEL 8892808 protein-coding Park7 Parkinsonism associated deglycase ENCODES a protein that exhibits copper ion binding (ortholog); cupric ion binding (ortholog); cuprous ion binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); androgen receptor signaling pathway (ortholog); cellular detoxification of aldehyde (ortholog); PARTICIPATES IN Parkinson's disease pathway; transforming growth factor-beta signaling pathway; ASSOCIATED WITH amyotrophic lateral sclerosis-parkinsonism/dementia complex 1 (ortholog); cerebral infarction (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN axon (ortholog); cell body (ortholog); chromatin (ortholog) NW_004955486 4974130 4985927 - 102003027 AGCD01059074;GBCB01086937;XM_005404061;XM_005404062;XM_005404063;XM_005404064 XP_005404118;XP_005404119;XP_005404120;XP_005404121 MODEL 9051638 protein-coding Ptprh protein tyrosine phosphatase receptor type H ENCODES a protein that exhibits cadherin binding (ortholog); INVOLVED IN peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity (ortholog); ASSOCIATED WITH hypertrophic cardiomyopathy (ortholog); nemaline myopathy 5A (ortholog); FOUND IN cytosol (ortholog); microvillus (ortholog); nuclear speck (ortholog) NW_004955567 992880 1018343 + 102024391 AGCD01074450;AGCD01074451;AGCD01074452;AGCD01074453;GBDK01387246;XM_013509243;XM_013509244;XM_013509245;XR_001232403 XP_013364697;XP_013364698;XP_013364699 MODEL 10352423 ncrna LOC106149846 uncharacterized LOC106149846 NW_004955455 11403700 11411136 - 106149846 AGCD01046003;GBDF01162276;XR_001236292 MODEL 8901654 protein-coding Nckap1 NCK associated protein 1 ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN apical protein localization (ortholog); basal protein localization (ortholog); cell migration involved in gastrulation (ortholog); PARTICIPATES IN E-cadherin signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); developmental and epileptic encephalopathy 11 (ortholog); FOUND IN filamentous actin (ortholog); glutamatergic synapse (ortholog); lamellipodium (ortholog) NW_004955403 14476689 14554380 + 102028709 AGCD01002021;AGCD01002022;AGCD01002023;AGCD01002024;AGCD01002025;GBCC01000299;XM_013514746 XP_013370200 MODEL 8780625 protein-coding LOC102005435 beta-defensin 33-like NW_004955403 53686697 53694266 + 102005435 AGCD01003067;AGCD01003068;AGCD01003069;GBDK01170251;XM_005373836 XP_005373893 MODEL 9039599 protein-coding LOC102010591 acyl-CoA desaturase 1 NW_004955485 9758703 9773277 + 102010591 AGCD01058780;GBDK01014034;XM_005403913 XP_005403970 MODEL 8886726 protein-coding Brwd1 bromodomain and WD repeat domain containing 1 INVOLVED IN cytoskeleton organization (ortholog); regulation of cell shape (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); male infertility (ortholog); oligospermia (ortholog); FOUND IN axoneme (ortholog); cytosol (ortholog); motile cilium (ortholog) NW_004955407 38003386 38107958 - 102022466 AGCD01007792;AGCD01007793;AGCD01007794;GBCB01009000;GBDJ01213321;XM_013504832;XM_013504835;XM_013504839 XP_013360286;XP_013360289;XP_013360293 MODEL 8762910 protein-coding Triml1 tripartite motif family like 1 ASSOCIATED WITH autistic disorder (ortholog); factor XI deficiency (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955403 21043233 21050261 - 102013678 AGCD01002179;GBDF01054116;XM_005373423;XM_005373424 XP_005373480;XP_005373481 MODEL 8821789 protein-coding LOC102006512 protein FAM170A-like NW_004955448 3085060 3094177 + 102006512 AGCD01041301;GBDK01265185;XM_005393037;XM_013518614 XP_005393094;XP_013374068 MODEL 8813111 protein-coding Rab34 RAB34, member RAS oncogene family ENCODES a protein that exhibits GTP-dependent protein binding (ortholog); GTPase activity (ortholog); guanyl nucleotide binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); cellular response to glucose stimulus (ortholog); cilium assembly (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); orofaciodigital syndrome XX (ortholog); FOUND IN centriole (ortholog); cytoplasmic vesicle (ortholog); early endosome (ortholog) NW_004955481 4441290 4445969 + 102023152 AGCD01056939;GBDF01044851;XM_005402720;XM_005402721 XP_005402777;XP_005402778 MODEL 8837782 protein-coding Pla2g12b phospholipase A2 group XIIB INVOLVED IN cholesterol homeostasis (ortholog); low-density lipoprotein particle remodeling (ortholog); triglyceride homeostasis (ortholog) NW_004955437 18694496 18723311 + 102024846 AGCD01034808;AGCD01034809;AGCD01034810;AGCD01034811;GBCE01066878;XM_005390003;XM_013516765;XM_013516766;XM_013516767 XP_005390060;XP_013372219;XP_013372220;XP_013372221 MODEL 39133336 snrna U4 U4 spliceosomal RNA 8916007 ncrna LOC102009480 uncharacterized LOC102009480 NW_004955412 20745073 20752832 + 102009480 AGCD01013012;AGCD01013013;GBDF01262373;XR_001232926;XR_260006 MODEL 9014054 pseudo LOC102019018 calcyclin-binding protein pseudogene NW_004955405 8575773 8576688 - 102019018 AGCD01004749 MODEL 8778322 pseudo LOC102011831 nuclear receptor-binding factor 2 pseudogene NW_004957988 521 1128 + 102011831 AGCD01081384 MODEL 10141913 protein-coding Serpina10 serpin family A member 10 INVOLVED IN liver regeneration (ortholog); regulation of acrosome reaction (ortholog); PARTICIPATES IN coagulation cascade pathway; ASSOCIATED WITH achondrogenesis type IA (ortholog); DICER1 syndrome (ortholog); nephrotic syndrome type 5 (ortholog) NW_004955438 16335201 16345093 - 106149168 AGCD01035404;AGCD01035405;XM_013517250;XM_013517251 XP_013372704;XP_013372705 MODEL 8797992 pseudo LOC102024292 transcription initiation factor TFIID subunit 2-like NW_004955448 12293896 12314391 - 102024292 AGCD01041546 MODEL 8802036 protein-coding Snx2 sorting nexin 2 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); identical protein binding (ortholog); insulin receptor binding (ortholog); INVOLVED IN lamellipodium morphogenesis (ortholog); retrograde transport, endosome to Golgi (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH Congenital Lower Urinary Tract Obstruction (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); endosome membrane (ortholog) NW_004955521 870469 934112 + 102009868 AGCD01068154;AGCD01068155;AGCD01068156;AGCD01068157;AGCD01068158;AGCD01068159;AGCD01068160;AGCD01068161;GBCE01029530;XM_005409303 XP_005409360 MODEL 9047481 protein-coding Rd3 RD3 regulator of GUCY2D INVOLVED IN negative regulation of guanylate cyclase activity (ortholog); protein transport (ortholog); retina development in camera-type eye (ortholog); ASSOCIATED WITH Eye Abnormalities (ortholog); fundus dystrophy (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cone photoreceptor outer segment (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955489 896964 903855 + 102013728 AGCD01059820;GBDK01188607;XM_005404502 XP_005404559 MODEL 8885648 ncrna LOC102012639 uncharacterized LOC102012639 NW_004955415 32915416 32918889 - 102012639 AGCD01016740;GBBH01160712;XR_260334 MODEL 9026487 protein-coding Slc25a38 solute carrier family 25 member 38 ENCODES a protein that exhibits glycine transmembrane transporter activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); glycine import into mitochondrion (ortholog); PARTICIPATES IN heme biosynthetic pathway; ASSOCIATED WITH autosomal recessive pyridoxine-refractory sideroblastic anemia 2 (ortholog); genetic disease (ortholog); sideroblastic anemia (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955420 29988147 29996485 - 102012762 AGCD01021524;GBCC01041557;GBDJ01135342;XM_013513554 XP_013369008 MODEL 8772156 protein-coding LOC102003680 uncharacterized LOC102003680 NW_004955513 4114603 4116964 + 102003680 AGCD01066920;GBDK01076605;XM_013506579 XP_013362033 MODEL 9051825 protein-coding Prnp prion protein (Kanno blood group) ENCODES a protein that exhibits amyloid-beta binding (ortholog); aspartic-type endopeptidase inhibitor activity (ortholog); ATP-dependent protein binding (ortholog); INVOLVED IN amyloid precursor protein metabolic process (ortholog); cellular response to amyloid-beta (ortholog); cellular response to copper ion (ortholog); PARTICIPATES IN glypican signaling pathway; iron uptake pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); autism spectrum disorder (ortholog); Cerebral Amyloidosis with Spongiform Encephalopathy (ortholog); FOUND IN cell surface (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955415 15442313 15454644 + 102007546 AGCD01016345;GBDJ01175870;XM_005380818 XP_005380875 MODEL 8766970 protein-coding Srek1 splicing regulatory glutamic acid and lysine rich protein 1 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955446 2908587 2946966 - 102014094 AGCD01039993;GBBH01089792;XM_005392605;XM_005392608;XM_005392611;XM_013518443 XP_005392662;XP_005392665;XP_005392668;XP_013373897 MODEL 8974109 protein-coding Tpgs2 tubulin polyglutamylase complex subunit 2 ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog) NW_004955402 23286950 23319207 - 102015678 AGCD01000621;GBDJ01041805;XM_005372833;XM_005372835;XM_005372836;XM_005372837;XM_005372838 XP_005372890;XP_005372892;XP_005372893;XP_005372894;XP_005372895 MODEL 9055848 protein-coding Rsph6a radial spoke head 6 homolog A INVOLVED IN manchette disassembly (ortholog); sperm flagellum assembly (ortholog); FOUND IN axoneme (ortholog); radial spoke (ortholog); radial spoke head (ortholog) NW_004955574 247728 264238 - 102022342 AGCD01075095;AGCD01075096;AGCD01075097;GBDJ01355094;XM_005413817 XP_005413874 MODEL 8714655 protein-coding LOC102011437 phospholipid-transporting ATPase FetA-like NW_004955472 770636 868645 - 102011437 AGCD01053355;AGCD01053356;AGCD01053357;AGCD01053358;AGCD01053359;AGCD01053360;AGCD01053361;AGCD01053362;AGCD01053363;GBDK01126213;XM_005401014;XM_005401015;XM_013523039;XM_013523040;XM_013523041;XM_013523042;XM_013523043 XP_005401071;XP_005401072;XP_013378493;XP_013378494;XP_013378495;XP_013378496;XP_013378497 MODEL 9002863 protein-coding Ptprj protein tyrosine phosphatase receptor type J ENCODES a protein that exhibits beta-catenin binding (ortholog); cadherin binding (ortholog); delta-catenin binding (ortholog); INVOLVED IN B cell differentiation (ortholog); blood coagulation (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; platelet-derived growth factor signaling pathway; somatostatin signaling pathway; ASSOCIATED WITH colon carcinoma (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cell junction (ortholog); cell surface (ortholog); cell-cell junction (ortholog) NW_004955422 396266 438792 - 102005815 AGCD01022405;AGCD01022406;GBDJ01233455;GBDJ01239540;XM_013514213 XP_013369667 MODEL 9008699 ncrna LOC102007974 uncharacterized LOC102007974 NW_004955462 12999013 13022290 + 102007974 AGCD01049421;GBDF01013996;XR_263132 MODEL 10393508 ncrna LOC106147016 uncharacterized LOC106147016 NW_004955511 5528055 5530500 + 106147016 AGCD01066566;GBBH01103658;XR_001231716 MODEL 9015525 protein-coding Tigd2 tigger transposable element derived 2 ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog) NW_004955405 80872 84184 + 102004447 AGCD01004553;GBDI01262079;XM_013517268 XP_013372722 MODEL 9038940 pseudo LOC102008374 ubiquitin-40S ribosomal protein S27a pseudogene NW_004955452 16615403 16615951 + 102008374 AGCD01044520 MODEL 9055821 protein-coding Pex12 peroxisomal biogenesis factor 12 ENCODES a protein that exhibits ubiquitin ligase activator activity (ortholog); ubiquitin protein ligase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); peroxisome organization (ortholog); protein import into peroxisome matrix (ortholog); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); peroxisomal biogenesis disorder (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955481 10057494 10060492 - 102018397 AGCD01057135;GBDI01354159;XM_013503459 XP_013358913 MODEL 8706439 protein-coding LOC102006850 vomeronasal type-1 receptor 2-like NW_004955603 165496 166395 - 102006850 AGCD01076814;XM_005414836 XP_005414893 MODEL 8702598 protein-coding Srek1ip1 SREK1 interacting protein 1 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955446 4230559 4267331 + 102021718 AGCD01040034;GBDF01047867;XM_005392633 XP_005392690 MODEL 8947018 protein-coding Pomk protein O-mannose kinase ENCODES a protein that exhibits carbohydrate kinase activity (ortholog); phosphotransferase activity, alcohol group as acceptor (ortholog); INVOLVED IN brain development (ortholog); carbohydrate phosphorylation (ortholog); learning or memory (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A12 (ortholog); genetic disease (ortholog); hydrocephalus (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955457 13299176 13318535 + 102014324 AGCD01047040;AGCD01047041;GBDF01222484;XM_005397077;XM_005397078;XM_013520674;XM_013520675 XP_005397134;XP_005397135;XP_013376128;XP_013376129 MODEL 8888378 protein-coding Slc44a3 solute carrier family 44 member 3 NW_004955435 3851 80691 + 102023947 AGCD01032711;GBCE01127157;GBDI01354385;XM_005388779;XM_005388780;XM_013516523;XM_013516524;XM_013516525 XP_005388836;XP_005388837;XP_013371977;XP_013371978;XP_013371979 MODEL 8795007 protein-coding LOC102023280 V-set domain-containing T-cell activation inhibitor 1-like NW_004955427 19924101 19932272 + 102023280 AGCD01027389;GBCB01114282;XM_013515167 XP_013370621 MODEL 8974999 protein-coding LOC102021567 leucine-rich repeat-containing protein 37A3-like NW_004955423 16045714 16051514 - 102021567 AGCD01023823;GBDF01009647;XM_013514556 XP_013370010 MODEL 9017356 protein-coding Trps1 transcriptional repressor GATA binding 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); protein domain specific binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cell surface receptor protein serine/threonine kinase signaling pathway (ortholog); chondrocyte differentiation (ortholog); hair follicle development (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); bone development disease (ortholog); brachydactyly (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955417 21674545 21913137 - 102028191 AGCD01018402;AGCD01018403;AGCD01018404;AGCD01018405;AGCD01018406;GBCQ01151050;XM_005381890;XM_005381891;XM_005381893;XM_013512789;XM_013512790;XM_013512791;XM_013512792;XM_013512793 XP_005381947;XP_005381948;XP_005381950;XP_013368243;XP_013368244;XP_013368245;XP_013368246;XP_013368247 MODEL 8992767 protein-coding Eml4 EMAP like 4 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); mitotic metaphase chromosome alignment (ortholog); negative regulation of microtubule depolymerization (ortholog); ASSOCIATED WITH Brain Neoplasms (ortholog); lung adenocarcinoma (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955441 9633906 9715866 + 102021802 AGCD01037026;GBDI01081618;XM_013517609;XM_013517610;XR_001235328 XP_013373063;XP_013373064 MODEL 8958132 protein-coding Rhobtb1 Rho related BTB domain containing 1 ASSOCIATED WITH autosomal dominant intellectual developmental disorder 70 (ortholog); juvenile rheumatoid arthritis (ortholog) NW_004955425 14299128 14366732 - 102017254 AGCD01025558;AGCD01025559;GBDI01355365;XM_005385941;XM_005385942;XM_013514879 XP_005385998;XP_005385999;XP_013370333 MODEL 8737534 pseudo LOC102009482 growth hormone-inducible transmembrane protein pseudogene NW_004955466 13355054 13356148 - 102009482 AGCD01051156 MODEL 10093894 protein-coding Plvap plasmalemma vesicle associated protein ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN developmental process (ortholog); MAPK cascade (ortholog); positive regulation of cellular extravasation (ortholog); ASSOCIATED WITH DIARRHEA 10, PROTEIN-LOSING ENTEROPATHY TYPE (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN caveola (ortholog); cell surface (ortholog) NW_004955524 885245 895552 + 106146320 AGCD01068722;AGCD01068723;GBCQ01008248;XM_013507239 XP_013362693 MODEL 150537103 snorna SNORA53 small nucleolar RNA, H/ACA box 53 8892623 protein-coding Rasa3 RAS p21 protein activator 3 ENCODES a protein that exhibits calcium channel regulator activity (ortholog); INVOLVED IN cellular response to heat (ortholog); platelet activation (ortholog); ASSOCIATED WITH aplastic anemia (ortholog); Dwarfism (ortholog); factor X deficiency (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog) NW_004955404 140906 225278 + 102026386 AGCD01003197;AGCD01003198;GBDI01126335;XM_005373923;XM_005373928;XM_013515439;XM_013515445;XM_013515454 XP_005373980;XP_005373985;XP_013370893;XP_013370899;XP_013370908 MODEL 8782805 gene LOC102010596 T-cell receptor beta-1 chain C region-like NW_004955494 1000095 1115539 - 102010596 AGCD01061390;AGCD01061391;XM_005405393 MODEL 8877003 protein-coding Smad6 SMAD family member 6 ENCODES a protein that exhibits chromatin binding (ortholog); co-SMAD binding (ortholog); I-SMAD binding (ortholog); INVOLVED IN aorta development (ortholog); aortic valve morphogenesis (ortholog); BMP signaling pathway (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH aortic valve disease 1 (ortholog); aortic valve disease 2 (ortholog); bicuspid aortic valve disease (ortholog); FOUND IN ciliary basal body (ortholog); cilium (ortholog); cytoplasm (ortholog) NW_004955450 9005332 9070790 - 102005761 AGCD01042582;AGCD01042583;AGCD01042584;GBBH01208531;GBCE01045102;XM_013519026 XP_013374480 MODEL 8707394 pseudo LOC102017496 protein SCAF11-like NW_004955529 791404 796397 + 102017496 AGCD01069657;AGCD01069658 MODEL 9047246 protein-coding Psma7 proteasome 20S subunit alpha 7 ENCODES a protein that exhibits identical protein binding (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); proteasome complex (ortholog) NW_004955528 1882397 1887811 + 102005631 AGCD01069575;GBDI01163625;GBDJ01371214;XM_005410038 XP_005410095 MODEL 10257132 ncrna LOC106147017 uncharacterized LOC106147017 NW_004955511 5518717 5521325 - 106147017 AGCD01066566;XR_001231717 MODEL 39131472 protein-coding TRIML2 tripartite motif family like 2 8905778 protein-coding Pla2g15 phospholipase A2 group XV ENCODES a protein that exhibits acylglycerol O-acyltransferase activity (ortholog); calcium-independent phospholipase A2 activity (ortholog); lysophospholipase activity (ortholog); INVOLVED IN ceramide metabolic process (ortholog); diacylglycerol biosynthetic process (ortholog); glycerophospholipid metabolic process (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; ASSOCIATED WITH arteriosclerosis (ortholog); autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN extracellular space (ortholog); intracellular membrane-bounded organelle (ortholog); lysosome (ortholog) NW_004955484 8386274 8412952 - 102010372 AGCD01058377;AGCD01058378;AGCD01058379;AGCD01058380;GBDF01154221;XM_005403586 XP_005403643 MODEL 39133337 snrna U4 U4 spliceosomal RNA 9033119 protein-coding Rasa4b RAS p21 protein activator 4B ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955456 15114525 15143493 + 102012611 AGCD01046662;GBDI01067417;XM_005396825;XM_005396826;XM_013520629;XM_013520630;XM_013520631;XM_013520632;XM_013520633;XR_001236353;XR_001236354 XP_005396882;XP_005396883;XP_013376083;XP_013376084;XP_013376085;XP_013376086;XP_013376087 MODEL 8792310 protein-coding LOC102006855 ATP-binding cassette sub-family A member 13-like NW_004955765 1665 15270 + 102006855 AGCD01078307;GBDF01026194;XM_013510189 XP_013365643 MODEL 8980497 protein-coding Parl presenilin associated rhomboid like ENCODES a protein that exhibits endopeptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN membrane protein proteolysis (ortholog); mitochondrial fusion (ortholog); negative regulation of intrinsic apoptotic signaling pathway (ortholog); PARTICIPATES IN mitochondrial autophagy pathway; ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); breast carcinoma (ortholog); Cachexia (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955420 23549125 23581782 + 102029086 AGCD01021248;GBDF01120915;XM_005383356 XP_005383413 MODEL 8846615 pseudo LOC102019021 vasculin-like protein 1 pseudogene NW_004955452 7262403 7283818 + 102019021 AGCD01044141;AGCD01044142;AGCD01044143;AGCD01044144 MODEL 8934062 ncrna LOC102010262 uncharacterized LOC102010262 NW_004955482 9098479 9099552 - 102010262 AGCD01057562;GBDF01226253;XR_263851 MODEL 9003445 pseudo LOC102024297 40S ribosomal protein S24 pseudogene NW_004955728 13674 14067 + 102024297 AGCD01078208 MODEL 8886768 pseudo LOC102023282 ferritin light chain pseudogene NW_004955507 3456863 3457373 + 102023282 AGCD01065625 MODEL 8757432 protein-coding LOC102012640 cystatin-SA NW_004955415 30607068 30613196 - 102012640 AGCD01016666;XM_005381141 XP_005381198 MODEL 8988150 ncrna LOC102005440 uncharacterized LOC102005440 NW_004955405 37765968 37767069 + 102005440 AGCD01005459;GBDF01250670;XR_001236121 MODEL 8881765 protein-coding Pla2g1b phospholipase A2 group IB ENCODES a protein that exhibits bile acid binding (ortholog); calcium ion binding (ortholog); calcium-dependent phospholipase A2 activity (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); arachidonate secretion (ortholog); cellular response to insulin stimulus (ortholog); ASSOCIATED WITH Insulin Resistance (ortholog); short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog); extracellular space (ortholog) NW_004955455 11308848 11316245 + 102013049 AGCD01045994;AGCD01045995;AGCD01045996;GBDK01431833;XM_005396512 XP_005396569 MODEL 8806108 protein-coding Prob1 proline rich basic protein 1 ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955418 1163993 1169968 + 102023699 AGCD01018711;AGCD01018712;GBCQ01097583;GBDJ01097373;XM_005382339 XP_005382396 MODEL 8705101 protein-coding LOC102011438 octapeptide-repeat protein T2-like NW_004955414 22365294 22365779 - 102011438 AGCD01015455;XM_005380507 XP_005380564 MODEL 9011920 protein-coding Brwd3 bromodomain and WD repeat domain containing 3 INVOLVED IN cytoskeleton organization (ortholog); regulation of cell shape (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog) NW_004955529 834459 992259 - 102018130 AGCD01069659;AGCD01069660;AGCD01069661;AGCD01069662;AGCD01069663;AGCD01069664;GBDK01342474;XM_005410071 XP_005410128 MODEL 8753560 ncrna LOC102015581 uncharacterized LOC102015581 NW_004955589 627175 631403 - 102015581 AGCD01076179;GBDF01248806;XR_265121 MODEL 9050991 pseudo LOC102006513 nucleolar protein 56-like NW_004955448 11571175 11572111 + 102006513 AGCD01041528 MODEL 126903055 snorna SNORA5A small nucleolar RNA, H/ACA box 5A 8968262 protein-coding Tph1 tryptophan hydroxylase 1 ENCODES a protein that exhibits tryptophan 5-monooxygenase activity (ortholog); INVOLVED IN bone remodeling (ortholog); circadian rhythm (ortholog); mammary gland alveolus development (ortholog); PARTICIPATES IN tryptophan metabolic pathway; ASSOCIATED WITH alcohol use disorder (ortholog); Alzheimer's disease (ortholog); attention deficit hyperactivity disorder (ortholog); FOUND IN cytoplasm (ortholog) NW_004955414 32803417 32828682 - 102014235 AGCD01015783;XM_005380396;XM_013511753;XM_013511754 XP_005380453;XP_013367207;XP_013367208 MODEL 9009983 protein-coding Pias1 protein inhibitor of activated STAT 1 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); enzyme binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN DNA damage response (ortholog); fat cell differentiation (ortholog); G1/S transition of mitotic cell cycle (ortholog); PARTICIPATES IN aldosterone signaling pathway; ataxia telangiectasia-mutated (ATM) signaling pathway; Hedgehog signaling pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); Bloom syndrome (ortholog); Brain Injuries (ortholog); FOUND IN glutamatergic synapse (ortholog); nuclear periphery (ortholog); nucleoplasm (ortholog) NW_004955450 7896741 7991045 - 102022988 AGCD01042552;AGCD01042553;AGCD01042554;GBDJ01224794;XM_005393682;XR_001235865 XP_005393739 MODEL 8964264 pseudo LOC102018643 tubulin alpha-1 chain-like NW_004955534 1689738 1691268 - 102018643 AGCD01070507 MODEL 8932060 protein-coding Srf serum response factor ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); associative learning (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); cardiomyopathy (ortholog); Cardiovascular Abnormalities (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955437 9100546 9109305 + 102019639 AGCD01034516;GBCB01002619;GBCQ01154048;XM_013516907 XP_013372361 MODEL 8925102 protein-coding Rd3l RD3 like ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); immunodeficiency 132A (ortholog) NW_004955538 2678458 2680078 - 102020161 AGCD01071136;GBDF01108545;XM_005410817 XP_005410874 MODEL 39133338 snrna U4 U4 spliceosomal RNA 8863448 protein-coding Serpina12 serpin family A member 12 ENCODES a protein that exhibits molecular function inhibitor activity (ortholog); INVOLVED IN gluconeogenesis (ortholog); glucose metabolic process (ortholog); lipid biosynthetic process (ortholog); ASSOCIATED WITH DICER1 syndrome (ortholog); mal de Meleda (ortholog); Metabolic Syndrome (ortholog); FOUND IN extracellular space (ortholog); plasma membrane (ortholog) NW_004955438 17826596 17849341 + 102020610 AGCD01035454;AGCD01035455;GBDF01057280;XM_005390390;XM_013517145 XP_005390447;XP_013372599 MODEL 8877139 protein-coding Pdcd2 programmed cell death 2 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN positive regulation of apoptotic process (ortholog); positive regulation of hematopoietic stem cell proliferation (ortholog); programmed cell death (ortholog) NW_004955411 3256612 3262685 + 102010043 AGCD01011544;AGCD01011545;GBBH01209693;XM_013510897 XP_013366351 MODEL 8713235 protein-coding Nckap1l NCK associated protein 1 like ENCODES a protein that exhibits GTPase activator activity (ortholog); protein kinase activator activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN actin polymerization-dependent cell motility (ortholog); B cell homeostasis (ortholog); B cell receptor signaling pathway (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); immunodeficiency 72 (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog); SCAR complex (ortholog) NW_004955458 1733799 1785591 + 102008293 AGCD01047202;AGCD01047203;AGCD01047204;GBDF01307320;XM_005397228 XP_005397285 MODEL 8894359 protein-coding Lhfpl4 LHFPL tetraspan subfamily member 4 ENCODES a protein that exhibits GABA receptor binding (ortholog); INVOLVED IN gamma-aminobutyric acid receptor clustering (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); regulation of inhibitory synapse assembly (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); long QT syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN GABA-ergic synapse (ortholog); inhibitory synapse (ortholog); postsynaptic membrane (ortholog) NW_004955561 1066799 1142099 - 102004126 AGCD01073829;AGCD01073830;AGCD01073831;AGCD01073832;AGCD01073833;AGCD01073834;AGCD01073835;AGCD01073836;GBDJ01123683;XM_005413016 XP_005413073 MODEL 8811117 protein-coding LOC102006858 translationally-controlled tumor protein NW_004957308 14 1574 + 102006858 AGCD01080704;GBDI01329672;GBDJ01414259;XM_005415227 XP_005415284 MODEL 8840955 protein-coding Plxdc1 plexin domain containing 1 INVOLVED IN spinal cord development (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); neuronal cell body (ortholog) NW_004955451 13982443 14028235 - 102019131 AGCD01043519;AGCD01043520;AGCD01043521;AGCD01043522;GBBH01005598;GBCQ01054931;XM_013519432 XP_013374886 MODEL 9065111 ncrna LOC102011020 uncharacterized LOC102011020 NW_004955497 1318649 1323855 + 102011020 AGCD01062456;GBCB01078283;XR_264191 MODEL 8939448 ncrna LOC102008377 uncharacterized LOC102008377 NW_004955406 39188080 39231357 + 102008377 AGCD01006621;AGCD01006622;AGCD01006623;GBBH01127399;XR_001236960;XR_001236961;XR_001236965;XR_259524 MODEL 39132909 snorna SNORD21 Small nucleolar RNA SNORD21 8966638 protein-coding Ptprk protein tyrosine phosphatase receptor type K ENCODES a protein that exhibits beta-catenin binding (ortholog); gamma-catenin binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cell adhesion (ortholog); cell migration (ortholog); cellular response to reactive oxygen species (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); melanoma (ortholog); Prostatic Neoplasms (ortholog); FOUND IN axon (ortholog); cell junction (ortholog); cell surface (ortholog) NW_004955436 8975742 9371608 - 102012681 AGCD01033755;AGCD01033756;AGCD01033757;AGCD01033758;AGCD01033759;GBBH01167041;XM_013516643 XP_013372097 MODEL 8905081 pseudo LOC102010598 60S ribosomal protein L7-like 1 pseudogene NW_004955494 4924654 4934243 - 102010598 AGCD01061515 MODEL 8982980 protein-coding Tigd3 tigger transposable element derived 3 ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog) NW_004955422 19880777 19883567 - 102010815 AGCD01023044;GBDF01055732;XM_005384499 XP_005384556 MODEL 8885051 protein-coding LOC102023283 prostaglandin-E(2) 9-reductase-like NW_004955429 370683 389012 - 102023283 AGCD01028346;GBCE01131009;XM_005386856 XP_005386913 MODEL 8855451 protein-coding Psma8 proteasome 20S subunit alpha 8 INVOLVED IN meiotic cell cycle (ortholog); proteasomal protein catabolic process (ortholog); regulation of meiosis I (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN nucleus (ortholog); spermatoproteasome complex (ortholog) NW_004955402 14230119 14278987 + 102013668 AGCD01000422;AGCD01000423;GBDF01088864;XM_005372729 XP_005372786 MODEL 10379273 ncrna LOC106149847 uncharacterized LOC106149847 NW_004955455 11474886 11484453 - 106149847 AGCD01046006;GBDF01248708;XR_001236293 MODEL 8981116 pseudo LOC102021570 60S acidic ribosomal protein P0 pseudogene NW_004955423 3215518 3216685 - 102021570 AGCD01023509 MODEL 8873585 protein-coding Triml2 tripartite motif family like 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN response to retinoic acid (ortholog); ASSOCIATED WITH autistic disorder (ortholog); factor XI deficiency (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955403 21089194 21104840 + 102006531 AGCD01002180;GBDF01242145;XM_013514804 XP_013370258 MODEL 8873519 protein-coding Proc protein C, inactivator of coagulation factors Va and VIIIa ENCODES a protein that exhibits identical protein binding (ortholog); oligopeptidase activity (ortholog); peptidase activity (ortholog); INVOLVED IN liver development (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of blood coagulation (ortholog); PARTICIPATES IN coagulation cascade pathway; protease mediated signaling via protease-activated receptor 1; protein C anticoagulant pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); acute kidney failure (ortholog); Acute Lung Injury (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular space (ortholog); Golgi apparatus (ortholog) NW_004955459 3097229 3105566 - 102004570 AGCD01048008;GBDJ01271470;XM_005397611;XM_005397612;XM_005397613;XM_005397614;XM_013521066;XM_013521067 XP_005397668;XP_005397669;XP_005397670;XP_005397671;XP_013376520;XP_013376521 MODEL 9005236 ncrna LOC102003682 uncharacterized LOC102003682 NW_004955432 17288234 17299687 - 102003682 AGCD01031120;GBDF01039986;XR_001234642;XR_261531 MODEL 8987107 protein-coding Snx20 sorting nexin 20 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); ASSOCIATED WITH Chromosome 16q12 Duplication Syndrome (ortholog); nephronophthisis 14 (ortholog); Townes-Brocks syndrome (ortholog); FOUND IN early endosome membrane (ortholog); nucleoplasm (ortholog) NW_004955433 8725950 8734699 - 102016508 AGCD01031602;GBDJ01170428;XM_005388271 XP_005388328 MODEL 8842401 ncrna LOC102009483 uncharacterized LOC102009483 NW_004955412 27560591 27578228 + 102009483 AGCD01013240;AGCD01013241;GBDK01345407;XR_260029 MODEL 8960550 protein-coding Eml5 EMAP like 5 ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Leber congenital amaurosis 3 (ortholog) NW_004955438 11225910 11366996 - 102010307 AGCD01035231;AGCD01035232;AGCD01035233;AGCD01035234;AGCD01035235;GBBH01176854;GBDK01223254;XM_013517167 XP_013372621 MODEL 8943590 protein-coding Pias2 protein inhibitor of activated STAT 2 ENCODES a protein that exhibits DNA binding (ortholog); nuclear androgen receptor binding (ortholog); nuclear estrogen receptor binding (ortholog); INVOLVED IN androgen receptor signaling pathway (ortholog); DNA-templated transcription (ortholog); negative regulation of androgen receptor signaling pathway (ortholog); PARTICIPATES IN androgen signaling pathway; Jak-Stat signaling pathway; ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); Microcephaly, Epilepsy, and Diabetes Syndrome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); PML body (ortholog) NW_004955402 32263616 32358532 - 102004439 AGCD01000814;AGCD01000815;AGCD01000816;AGCD01000817;GBDI01219645;XM_005372880;XM_013510479;XM_013510482;XM_013510483;XM_013510485;XM_013510488;XM_013510490 XP_005372937;XP_013365933;XP_013365936;XP_013365937;XP_013365939;XP_013365942;XP_013365944 MODEL 8757281 protein-coding Srfbp1 serum response factor binding protein 1 ASSOCIATED WITH aortic dissection (ortholog); connective tissue disease (ortholog); cutis laxa (ortholog); FOUND IN nucleus (ortholog) NW_004955521 105565 160906 + 102005626 AGCD01068129;AGCD01068130;GBDF01052516;XM_005409286 XP_005409343 MODEL 8982386 protein-coding LOC102010274 cationic trypsin NW_004955494 1011732 1014914 - 102010274 AGCD01061390;XM_005405392 XP_005405449 MODEL 8875411 ncrna LOC102007976 uncharacterized LOC102007976 NW_004955465 144325 179094 + 102007976 AGCD01050304;GBDF01285865;XR_263226 MODEL 8819341 protein-coding Otulin OTU deubiquitinase with linear linkage specificity ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type peptidase activity (ortholog); INVOLVED IN innate immune response (ortholog); negative regulation of inflammatory response (ortholog); negative regulation of NF-kappaB transcription factor activity (ortholog); ASSOCIATED WITH autosomal dominant craniometaphyseal dysplasia (ortholog); chondrocalcinosis (ortholog); Chondrocalcinosis 2 (ortholog); FOUND IN cytoplasm (ortholog); LUBAC complex (ortholog) NW_004955426 3953852 3982532 + 102004732 AGCD01026086;AGCD01026087;GBCE01045026;GBDJ01020180;XM_013514962 XP_013370416 MODEL 8972400 protein-coding LOC102012646 uncharacterized LOC102012646 NW_004955416 14157382 14202260 + 102012646 AGCD01017243;AGCD01017244;AGCD01017245;AGCD01017246;GBCQ01192362;XM_013512420 XP_013367874 MODEL 8954256 protein-coding LOC102005442 endothelin-converting enzyme-like 1 NW_004955453 3475528 3480680 + 102005442 AGCD01044660;GBDJ01085718;GBDK01397222;XM_013520001 XP_013375455 MODEL 9029511 protein-coding Pla2g2c phospholipase A2 group IIC ENCODES a protein that exhibits calcium-dependent phospholipase A2 activity (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog) NW_004955452 771031 783323 - 102017836 AGCD01043827;GBDI01034019;XM_005394677;XR_001236118 XP_005394734 MODEL 8791839 protein-coding LOC102011839 keratin-associated protein 7-1 NW_004955407 30545079 30553536 - 102011839 AGCD01007636;GBDF01259648;XM_005375655 XP_005375712 MODEL 39132836 snorna SNORA5C small nucleolar RNA, H/ACA box 5C 8822652 protein-coding Wdr18 WD repeat domain 18 ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog); Peutz-Jeghers syndrome (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955495 6869543 6877058 - 102014147 AGCD01062099;GBCQ01121381;XM_005406002 XP_005406059 MODEL 8982585 protein-coding Trpt1 tRNA phosphotransferase 1 ENCODES a protein that exhibits tRNA 2'-phosphotransferase activity (ortholog); INVOLVED IN regulation of protein kinase activity (ortholog); tRNA splicing, via endonucleolytic cleavage and ligation (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); multiple endocrine neoplasia type 1 (ortholog) NW_004955422 20851806 20854349 + 102020577 AGCD01023095;GBDF01118758;XM_005384638;XM_005384641;XM_013513959 XP_005384695;XP_005384698;XP_013369413 MODEL 8923251 protein-coding Tph2 tryptophan hydroxylase 2 ENCODES a protein that exhibits tryptophan 5-monooxygenase activity (ortholog); INVOLVED IN cellular response to lithium ion (ortholog); circadian rhythm (ortholog); response to activity (ortholog); ASSOCIATED WITH acute stress disorder (ortholog); alcohol use disorder (ortholog); amphetamine abuse (ortholog); FOUND IN axon (ortholog); neuron projection (ortholog); neuronal cell body (ortholog) NW_004955405 11877474 11981035 + 102005552 AGCD01004844;GBDI01275596;XM_005374324;XM_013517642;XM_013517643;XM_013517645 XP_005374381;XP_013373096;XP_013373097;XP_013373099 MODEL 8878486 protein-coding Pias3 protein inhibitor of activated STAT 3 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); NF-kappaB binding (ortholog); potassium channel regulator activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of gene expression (ortholog); negative regulation of osteoclast differentiation (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; Jak-Stat signaling pathway; sumoylation pathway; ASSOCIATED WITH cataract 46 juvenile-onset (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955568 227603 237396 + 102006402 AGCD01074506;GBDF01090380;XM_005413436;XM_005413437 XP_005413493;XP_005413494 MODEL 8750635 protein-coding Rhobtb2 Rho related BTB domain containing 2 ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); developmental and epileptic encephalopathy 64 (ortholog); dystonia (ortholog) NW_004955403 46367390 46390551 + 102016123 AGCD01002856;GBBH01177038;XM_005373692;XM_005373693;XM_013513944 XP_005373749;XP_005373750;XP_013369398 MODEL 8979836 protein-coding Slc25a39 solute carrier family 25 member 39 ENCODES a protein that exhibits 2 iron, 2 sulfur cluster binding (ortholog); glutathione transmembrane transporter activity (ortholog); INVOLVED IN cellular response to iron ion (ortholog); glutathione import into mitochondrion (ortholog); ASSOCIATED WITH GRN-related frontotemporal lobar degeneration with TDP43 inclusions (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955451 17352853 17356466 - 102012272 AGCD01043743;AGCD01043744;GBDI01005619;GBDJ01010093;XM_013519261 XP_013374715 MODEL 8768061 ncrna LOC102024299 uncharacterized LOC102024299 NW_004956553 502 2571 + 102024299 AGCD01079788;GBCQ01187473;XR_265210 MODEL 8817383 protein-coding Rsph9 radial spoke head component 9 INVOLVED IN axonemal central apparatus assembly (ortholog); axoneme assembly (ortholog); cilium movement (ortholog); ASSOCIATED WITH infantile Refsum disease (ortholog); primary ciliary dyskinesia (ortholog); primary ciliary dyskinesia 12 (ortholog); FOUND IN 9+2 motile cilium (ortholog); axoneme (ortholog); motile cilium (ortholog) NW_004955437 9437281 9448514 + 102013447 AGCD01034531;GBDF01000568;XM_005389787;XM_013516944 XP_005389844;XP_013372398 MODEL 39133339 snrna U4 U4 spliceosomal RNA 9039473 ncrna LOC102006859 uncharacterized LOC102006859 NW_004955451 17177722 17181204 - 102006859 AGCD01043726;AGCD01043727;XR_262622 MODEL 10315924 ncrna LOC106147018 uncharacterized LOC106147018 NW_004955511 6378645 6379891 + 106147018 AGCD01066606;GBDF01010791;XR_001231718 MODEL 8985655 protein-coding Pomp proteasome maturation protein INVOLVED IN proteasome assembly (ortholog); ASSOCIATED WITH COVID-19 (ortholog); exfoliation syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955497 7978434 7996982 + 102017356 AGCD01062689;AGCD01062690;GBDF01005439;XM_013505497 XP_013360951 MODEL 8970210 pseudo LOC102011021 TATA box-binding protein-associated factor RNA polymerase I subunit D pseudogene NW_004955502 102213 103039 + 102011021 AGCD01064232 MODEL 9021111 protein-coding Slc44a4 solute carrier family 44 member 4 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); thiamine pyrophosphate transmembrane transporter activity (ortholog); INVOLVED IN acetylcholine biosynthetic process (ortholog); acetylcholine secretion (ortholog); choline transport (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 72 (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog) NW_004955437 383523 396456 - 102003278 AGCD01034128;AGCD01034129;GBDF01148766;XM_005389391 XP_005389448 MODEL 9012055 protein-coding Plxdc2 plexin domain containing 2 ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog) NW_004955429 8141253 8566927 - 102021693 AGCD01028617;AGCD01028618;AGCD01028619;AGCD01028620;AGCD01028621;AGCD01028622;GBCE01053820;XM_005386938 XP_005386995 MODEL 8979142 ncrna LOC102006863 uncharacterized LOC102006863 NW_004955452 9730790 9732267 + 102006863 AGCD01044258;GBDF01076687;XR_001236011;XR_001236012;XR_262671 MODEL 8970058 protein-coding LOC102008379 zinc finger protein 454 NW_004955408 1440967 1461815 - 102008379 AGCD01007959;GBBH01113383;XM_013507982;XM_013507985 XP_013363436;XP_013363439 MODEL 8851735 protein-coding Rasal1 RAS protein activator like 1 INVOLVED IN positive regulation of dendrite extension (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); kidney disease (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955482 9447984 9471852 - 102013722 AGCD01057570;AGCD01057571;GBBH01069782;GBCQ01151933;XM_013503712 XP_013359166 MODEL 9017232 protein-coding Psmb1 proteasome 20S subunit beta 1 ASSOCIATED WITH Acute Coronary Syndrome (ortholog); amenorrhea (ortholog); NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, HYPOTONIA, AND ABSENT LANGUAGE (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955411 3285610 3304210 + 102015387 AGCD01011545;GBDF01010051;XM_005377618;XM_005377619 XP_005377675;XP_005377676 MODEL 8912391 protein-coding Tigd4 tigger transposable element derived 4 NW_004955471 7221636 7238289 - 102028953 AGCD01053142;AGCD01053143;GBCB01089350;XM_005400910;XM_013522901;XM_013522902 XP_005400967;XP_013378355;XP_013378356 MODEL 10135419 ncrna LOC106149848 uncharacterized LOC106149848 NW_004955455 13017103 13018975 + 106149848 AGCD01046056;GBDF01162154;XR_001236296 MODEL 9061860 protein-coding Rdh10 retinol dehydrogenase 10 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); bud elongation involved in lung branching (ortholog); ear development (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH Craniofacial Abnormalities (ortholog); Experimental Liver Cirrhosis (ortholog); Fetal Death (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); nucleus (ortholog) NW_004955444 6878722 6909421 - 102024388 AGCD01038876;GBDI01121275;GBDJ01318433;XM_005392094 XP_005392151 MODEL 8877137 pseudo LOC102009484 signal peptide peptidase-like 3 pseudogene NW_004955412 33749516 33760698 + 102009484 AGCD01013370 MODEL 9030587 protein-coding Rab35 RAB35, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); cellular response to nerve growth factor stimulus (ortholog); endosomal transport (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN cell projection membrane (ortholog); clathrin-coated endocytic vesicle (ortholog); clathrin-coated pit (ortholog) NW_004955455 11484557 11502630 + 102014978 AGCD01046006;AGCD01046007;GBDF01246895;XM_005396519 XP_005396576 MODEL 8779851 protein-coding Pdcd2l programmed cell death 2 like ASSOCIATED WITH hereditary spastic paraplegia 75 (ortholog) NW_004955468 4011644 4027481 + 102004799 AGCD01051880;AGCD01051881;AGCD01051882;GBDF01291975;XM_005400004 XP_005400061 MODEL 9015181 protein-coding Lhfpl5 LHFPL tetraspan subfamily member 5 INVOLVED IN auditory receptor cell stereocilium organization (ortholog); detection of mechanical stimulus involved in sensory perception of sound (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 67 (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog); stereocilium bundle (ortholog) NW_004955437 3644448 3650688 + 102013214 AGCD01034330;XM_013516732 XP_013372186 MODEL 8905934 protein-coding Pias4 protein inhibitor of activated STAT 4 ENCODES a protein that exhibits DNA binding (ortholog); SUMO ligase activity (ortholog); SUMO transferase activity (ortholog); INVOLVED IN central nervous system development (ortholog); hair follicle development (ortholog); limb epidermis development (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; Jak-Stat signaling pathway; type II interferon signaling pathway; ASSOCIATED WITH amenorrhea (ortholog); RASopathy (ortholog); FOUND IN cytoplasm (ortholog); nuclear matrix (ortholog); nucleoplasm (ortholog) NW_004955495 4760576 4791422 - 102015025 AGCD01061946;AGCD01061947;AGCD01061948;GBDI01227492;XM_005405818;XM_013505234 XP_005405875;XP_013360688 MODEL 8907025 protein-coding Smad7 SMAD family member 7 ENCODES a protein that exhibits activin receptor binding (ortholog); beta-catenin binding (ortholog); collagen binding (ortholog); INVOLVED IN adherens junction assembly (ortholog); artery morphogenesis (ortholog); beta-catenin destruction complex disassembly (ortholog); PARTICIPATES IN altered transforming growth factor-beta Smad dependent signaling pathway; Bone morphogenetic proteins signaling pathway; colorectal cancer pathway; ASSOCIATED WITH atrial fibrillation (ortholog); chromosome 18q deletion syndrome (ortholog); colorectal cancer (ortholog); FOUND IN adherens junction (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955402 34028184 34058949 - 102010756 AGCD01000845;AGCD01000846;AGCD01000847;AGCD01000848;GBBH01052099;GBDK01074940;XM_013510569 XP_013366023 MODEL 8755182 protein-coding Pex13 peroxisomal biogenesis factor 13 ENCODES a protein that exhibits protein transmembrane transporter activity (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); cerebral cortex cell migration (ortholog); fatty acid alpha-oxidation (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); genetic disease (ortholog); infantile Refsum disease (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955424 22799568 22830718 - 102025814 AGCD01024987;AGCD01024988;AGCD01024989;AGCD01024990;GBDK01230828;XM_005385748 XP_005385805 MODEL 8994995 protein-coding LOC102012648 galectin-9-like NW_004955481 5681486 5685579 - 102012648 AGCD01057000;XM_005402781 XP_005402838 MODEL 9009375 protein-coding Slc25a4 solute carrier family 25 member 4 ENCODES a protein that exhibits ATP:ADP antiporter activity (ortholog); enzyme binding (ortholog); oxidative phosphorylation uncoupler activity (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); ADP transport (ortholog); apoptotic mitochondrial changes (ortholog); PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH alcoholic cardiomyopathy (ortholog); Alzheimer's disease (ortholog); autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 2 (ortholog); FOUND IN membrane (ortholog); membrane raft (ortholog); mitochondrial inner membrane (ortholog) NW_004955403 23878329 23882322 - 102003079 AGCD01002262;AGCD01002263;GBCB01005621;XM_005373479 XP_005373536 MODEL 8856998 pseudo LOC102015585 pre-mRNA-splicing factor 38A pseudogene NW_004955402 63168495 63172523 + 102015585 AGCD01001661 MODEL 8993496 protein-coding Bscl2 BSCL2 lipid droplet biogenesis associated, seipin ENCODES a protein that exhibits phospholipid binding (ortholog); INVOLVED IN adipose tissue development (ortholog); central nervous system development (ortholog); chromosome organization (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Asthenozoospermia (ortholog); autosomal dominant distal hereditary motor neuronopathy 13 (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955599 505725 514225 + 102011605 AGCD01076654;GBDJ01021043;XM_013510053;XM_013510054;XM_013510055;XM_013510056 XP_013365507;XP_013365508;XP_013365509;XP_013365510 MODEL 8840932 ncrna LOC102018644 uncharacterized LOC102018644 NW_004955536 3109313 3110744 + 102018644 AGCD01070809;GBDF01306563;XR_001232063;XR_001232064 MODEL 39132826 snorna SNORD21 Small nucleolar RNA SNORD21 8765714 pseudo LOC102010601 28S ribosomal protein S36, mitochondrial pseudogene NW_004955497 1775669 1783185 - 102010601 AGCD01062473 MODEL 10299374 protein-coding LOC106147019 isoaspartyl peptidase/L-asparaginase-like NW_004955511 6383577 6392535 + 106147019 AGCD01066606;AGCD01066607;AGCD01066608;AGCD01066609;GBDI01176415;XM_013506512 XP_013361966 MODEL 9025092 protein-coding Ptprm protein tyrosine phosphatase receptor type M ENCODES a protein that exhibits cadherin binding (ortholog); identical protein binding (ortholog); phosphatase activity (ortholog); INVOLVED IN homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); negative regulation of angiogenesis (ortholog); negative regulation of endothelial cell migration (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); intellectual disability (ortholog); pancreatic ductal adenocarcinoma (ortholog); FOUND IN adherens junction (ortholog); cell-cell junction (ortholog); cytoplasm (ortholog) NW_004955402 3243447 3756457 - 102030364 AGCD01000098;AGCD01000099;AGCD01000100;AGCD01000101;AGCD01000102;AGCD01000103;GBBH01229558;GBCE01153361;XM_005372618 XP_005372675 MODEL 8838893 protein-coding Parm1 prostate androgen-regulated mucin-like protein 1 FOUND IN cytosol (ortholog); early endosome (ortholog); Golgi apparatus (ortholog) NW_004955474 1065758 1144460 + 102007887 AGCD01054239;GBDJ01141983;XM_005401315 XP_005401372 MODEL 8963996 pseudo LOC102006864 protein phosphatase 1 regulatory subunit 21 pseudogene NW_004955405 13078719 13081046 + 102006864 AGCD01004872 MODEL 8979477 protein-coding Pomt1 protein O-mannosyltransferase 1 ENCODES a protein that exhibits mannosyltransferase activity (ortholog); INVOLVED IN extracellular matrix organization (ortholog); positive regulation of protein O-linked glycosylation (ortholog); protein O-linked mannosylation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); FOUND IN acrosomal vesicle (ortholog); dolichyl-phosphate-mannose-protein mannosyltransferase complex (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955513 1189169 1203933 + 102021696 AGCD01066845;GBDF01007560;XM_005408363;XM_013506609;XM_013506610;XM_013506611;XM_013506612;XM_013506613 XP_005408420;XP_013362063;XP_013362064;XP_013362065;XP_013362066;XP_013362067 MODEL 8917734 protein-coding Trpv1 transient receptor potential cation channel subfamily V member 1 ENCODES a protein that exhibits ATP binding (ortholog); calcium channel activity (ortholog); calmodulin binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); calcium ion import across plasma membrane (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH Abderhalden-Kaufmann-Lignac Syndrome (ortholog); alcohol withdrawal syndrome (ortholog); atherosclerosis (ortholog); FOUND IN dendrite (ortholog); external side of plasma membrane (ortholog); GABA-ergic synapse (ortholog) NW_004955467 13221391 13239089 + 102022802 AGCD01051668;AGCD01051669;XM_005399725 XP_005399782 MODEL 8801756 protein-coding Wdr19 WD repeat domain 19 INVOLVED IN cell morphogenesis (ortholog); cilium assembly (ortholog); digestive system development (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 5 (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN cilium (ortholog); intraciliary transport particle A (ortholog); motile cilium (ortholog) NW_004955443 8053847 8122918 - 102028692 AGCD01038308;AGCD01038309;AGCD01038310;GBCQ01123355;XM_005391986 XP_005392043 MODEL 8964229 protein-coding LOC102017503 core histone macro-H2A.2 ENCODES a protein that exhibits chromatin DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN brain development (ortholog); establishment of protein localization to chromatin (ortholog); negative regulation of gene expression, epigenetic (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN Barr body (ortholog); chromatin (ortholog); nucleoplasm (ortholog) NW_004955437 21126581 21186308 - 102017503 AGCD01034898;AGCD01034899;AGCD01034900;AGCD01034901;AGCD01034902;AGCD01034903;AGCD01034904;AGCD01034905;GBDJ01420059;XM_005390070 XP_005390127 MODEL 10349399 protein-coding LOC106149849 myosin heavy chain IB NW_004955455 10962369 10963072 + 106149849 AGCD01045970;GBBH01053266;XM_013520360 XP_013375814 MODEL 8735017 protein-coding LOC102011439 interferon-inducible GTPase 1-like NW_004955415 3743539 3769145 + 102011439 AGCD01015950;AGCD01015951;AGCD01015952;GBCB01074015;XM_005380561;XM_013512404 XP_005380618;XP_013367858 MODEL 8814575 protein-coding Srgap1 SLIT-ROBO Rho GTPase activating protein 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN cell migration (ortholog); Rho protein signal transduction (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Brain Hypoxia-Ischemia (ortholog); CAKUT (ortholog) NW_004955458 10842745 10991500 + 102019672 AGCD01047707;AGCD01047708;AGCD01047709;AGCD01047710;AGCD01047711;GBDK01433747;XM_013520989;XM_013520990 XP_013376443;XP_013376444 MODEL 8702359 protein-coding Eml6 EMAP like 6 ASSOCIATED WITH High Myopia (ortholog); keratoconus (ortholog) NW_004955424 28125287 28461646 - 102014262 AGCD01025147;AGCD01025148;AGCD01025149;AGCD01025150;AGCD01025151;AGCD01025152;AGCD01025153;AGCD01025154;AGCD01025155;AGCD01025156;AGCD01025157;AGCD01025158;AGCD01025159;AGCD01025160;AGCD01025161;AGCD01025162;AGCD01025163;AGCD01025164;AGCD01025165;AGCD01025166;AGCD01025167;AGCD01025168;GBDF01277097;XM_013514622;XM_013514623;XM_013514624;XM_013514625;XM_013514626;XR_001234170 XP_013370076;XP_013370077;XP_013370078;XP_013370079;XP_013370080 MODEL 9002255 protein-coding LOC102007981 translation initiation factor IF-2-like NW_004955413 24038776 24042868 - 102007981 AGCD01014345;GBDI01226162;XM_005379216 XP_005379273 MODEL 8774380 protein-coding LOC102005443 keratin-associated protein 20-1-like NW_004955407 30075930 30076100 + 102005443 AGCD01007625;XM_005375636 XP_005375693 MODEL 8701364 protein-coding LOC102023285 olfactory receptor 4C46-like NW_004955511 165034 165966 + 102023285 AGCD01066321;XM_005408180 XP_005408237 MODEL 9019438 protein-coding Pla2g2d phospholipase A2 group IID ENCODES a protein that exhibits calcium-dependent phospholipase A2 activity (ortholog); heparan sulfate proteoglycan binding (ortholog); heparin binding (ortholog); INVOLVED IN CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (ortholog); negative regulation of T cell activation (ortholog); negative regulation of T cell proliferation (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog); FOUND IN extracellular region (ortholog) NW_004955452 738133 743718 - 102016971 AGCD01043827;GBDI01339544;XM_005394674 XP_005394731 MODEL 8942634 protein-coding LOC102019025 zinc finger protein 14-like NW_004955454 7269898 7274969 + 102019025 AGCD01045291;GBDF01011085;XM_013520194;XM_013520195;XM_013520196;XM_013520197 XP_013375648;XP_013375649;XP_013375650;XP_013375651 MODEL 8915716 pseudo LOC102021571 40S ribosomal protein SA-like NW_004955424 12719916 12720914 - 102021571 AGCD01024618 MODEL 8969408 pseudo LOC102011022 zinc finger protein 649-like NW_004955503 3712980 3714698 + 102011022 AGCD01064640 MODEL 8779795 protein-coding Smad9 SMAD family member 9 INVOLVED IN BMP signaling pathway (ortholog); bone development (ortholog); cartilage development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); genetic disease (ortholog); Hypoglossal Nerve Injuries (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955431 9117616 9184920 + 102027327 AGCD01030157;AGCD01030158;GBDF01252867;XM_005387676;XM_013515879 XP_005387733;XP_013371333 MODEL 8827968 protein-coding Trio trio Rho guanine nucleotide exchange factor ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); negative regulation of fat cell differentiation (ortholog); neuron projection morphogenesis (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog); presynaptic active zone (ortholog) NW_004955426 3647273 3846916 + 102008555 AGCD01026083;AGCD01026084;GBCQ01175997;XM_005386123;XM_013514974 XP_005386180;XP_013370428 MODEL 8715172 protein-coding Rhobtb3 Rho related BTB domain containing 3 ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); small GTPase binding (ortholog); INVOLVED IN male gonad development (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH COVID-19 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (ortholog) NW_004955418 16772363 16839347 - 102028966 AGCD01019128;AGCD01019129;GBCE01159877;GBDK01193526;XM_013512974 XP_013368428 MODEL 8791026 protein-coding Tpi1 triosephosphate isomerase 1 ENCODES a protein that exhibits isomerase activity (ortholog); protein homodimerization activity (ortholog); triose-phosphate isomerase activity (ortholog); INVOLVED IN canonical glycolysis (ortholog); gluconeogenesis (ortholog); glucose metabolic process (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose and mannose metabolic pathway; fructose-1,6-bisphosphatase deficiency pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Animal Disease Models (ortholog); carbohydrate metabolic disorder (ortholog); FOUND IN cytosol (ortholog) NW_004955413 4467615 4471594 + 102005919 AGCD01013617;GBDF01008105;XM_005378838 XP_005378895 MODEL 8776788 protein-coding Snx21 sorting nexin family member 21 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN early endosome membrane (ortholog) NW_004955445 11454802 11462625 - 102027584 AGCD01039695;GBDJ01139116;XM_005392407 XP_005392464 MODEL 9008967 protein-coding Serpina3 serpin family A member 3 ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Arterial Occlusive Diseases (ortholog); Cerebral Hemorrhage (ortholog); FOUND IN extracellular space (ortholog) NW_004955438 17758763 17766113 - 102020287 AGCD01035451;GBCE01004471;XM_005390389 XP_005390446 MODEL 9058225 protein-coding LOC102024300 keratin-associated protein 4-1-like NW_004955451 15611349 15612053 - 102024300 AGCD01043621;AGCD01043622;XM_013519128 XP_013374582 MODEL 39133230 snrna U4 U4 spliceosomal RNA 8898080 protein-coding Rspo1 R-spondin 1 ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); heparin binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN male meiotic nuclear division (ortholog); negative regulation of eating behavior (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); obesity (ortholog); FOUND IN extracellular space (ortholog); nucleus (ortholog) NW_004955452 15415417 15435616 - 102012602 AGCD01044486;GBDK01265544;XM_005395212;XM_005395213 XP_005395269;XP_005395270 MODEL 8773914 protein-coding LOC102010275 fer-1-like protein 4 NW_004955422 25848531 25882747 + 102010275 AGCD01023269;GBCQ01116103;XM_013514202 XP_013369656 MODEL 8921061 protein-coding Trpv3 transient receptor potential cation channel subfamily V member 3 ENCODES a protein that exhibits calcium channel activity (ortholog); identical protein binding (ortholog); monoatomic cation channel activity (ortholog); INVOLVED IN negative regulation of hair cycle (ortholog); positive regulation of calcium ion import (ortholog); response to temperature stimulus (ortholog); ASSOCIATED WITH alopecia (ortholog); atopic dermatitis (ortholog); autosomal dominant mutilating palmoplantar keratoderma with periorificial keratotic plaques (ortholog); FOUND IN cytoplasm (ortholog); lysosome (ortholog); membrane (ortholog) NW_004955467 13246099 13276741 + 102024887 AGCD01051669;AGCD01051670;GBDF01247435;XM_013522250 XP_013377704 MODEL 8806603 pseudo LOC102012649 pre-mRNA-splicing factor SLU7 pseudogene NW_004955481 9058890 9071635 + 102012649 AGCD01057094 MODEL 8756869 protein-coding Pdcd4 programmed cell death 4 INVOLVED IN BMP signaling pathway (ortholog); cellular response to lipopolysaccharide (ortholog); epithelial to mesenchymal transition involved in cardiac fibroblast development (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH Arterial Injury (ortholog); Cornelia de Lange syndrome 3 (ortholog); dilated cardiomyopathy 1DD (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955485 530642 553508 - 102013417 AGCD01058452;AGCD01058453;GBCC01022030;XM_005403745;XM_005403747 XP_005403802;XP_005403804 MODEL 8726721 ncrna LOC102011840 uncharacterized LOC102011840 NW_004955407 35818286 35827944 - 102011840 AGCD01007751;GBCQ01178585;XR_001231235;XR_001231237;XR_001231238;XR_259614 MODEL 8845469 pseudo LOC102010608 RWD domain-containing protein 1 pseudogene NW_004955429 4973092 4973820 - 102010608 AGCD01028499 MODEL 8851127 protein-coding Pibf1 progesterone immunomodulatory binding factor 1 ENCODES a protein that exhibits identical protein binding (ortholog); interleukin-4 receptor binding (ortholog); INVOLVED IN activation of Janus kinase activity (ortholog); cilium assembly (ortholog); mitotic metaphase chromosome alignment (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); Dandy-Walker syndrome (ortholog); Encephalocele (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955404 33713903 33897622 - 102026181 AGCD01004078;AGCD01004079;AGCD01004080;AGCD01004081;AGCD01004082;AGCD01004083;GBCQ01006314;XM_005374185;XM_005374186;XM_005374187;XM_013516628 XP_005374242;XP_005374243;XP_005374244;XP_013372082 MODEL 8966292 protein-coding Emp1 epithelial membrane protein 1 INVOLVED IN apoptotic process (ortholog); bleb assembly (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); Experimental Liver Cirrhosis (ortholog); Prostatic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955413 10062621 10081551 + 102022803 AGCD01013925;GBCE01001043;XM_005378983 XP_005379040 MODEL 8813441 ncrna LOC102008387 uncharacterized LOC102008387 NW_004955410 24882847 24896816 + 102008387 AGCD01011136;GBDK01431851;XR_001232709 MODEL 8834281 protein-coding LOC102003683 taste receptor type 2 member 7-like NW_004955432 18798901 18799800 + 102003683 AGCD01031161;XM_005388153 XP_005388210 MODEL 8948495 protein-coding Plxna1 plexin A1 ENCODES a protein that exhibits semaphorin receptor activity (ortholog); INVOLVED IN dichotomous subdivision of terminal units involved in salivary gland branching (ortholog); gonadotrophin-releasing hormone neuronal migration to the hypothalamus (ortholog); neuron projection extension (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); DWORSCHAK-PUNETHA NEURODEVELOPMENTAL SYNDROME (ortholog); epilepsy (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); membrane (ortholog) NW_004955429 16482821 16522978 - 102030554 AGCD01028833;GBBH01185809;XM_013515479;XM_013515480 XP_013370933;XP_013370934 MODEL 8938460 protein-coding Tigd5 tigger transposable element derived 5 ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog) NW_004955454 2299244 2304795 + 102023225 AGCD01045015;GBCE01018783;XM_013520026 XP_013375480 MODEL 8816454 ncrna LOC102006867 uncharacterized LOC102006867 NW_004955452 14398434 14403748 + 102006867 AGCD01044466;GBDF01039609;XR_001236058;XR_262689 MODEL 8881227 pseudo LOC102009487 heterogeneous nuclear ribonucleoprotein A1-like NW_004955467 9990149 9991458 + 102009487 AGCD01051538 MODEL 8884158 protein-coding Rasal2 RAS protein activator like 2 INVOLVED IN adipose tissue development (ortholog); gene expression (ortholog); multicellular organism growth (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autistic disorder (ortholog); Disease Progression (ortholog) NW_004955406 17602584 17904611 + 102020977 AGCD01006012;AGCD01006013;AGCD01006014;AGCD01006015;AGCD01006016;GBDF01123106;XM_005374920;XM_005374922;XM_005374926;XM_005374927;XM_013521024;XM_013521034;XM_013521035;XM_013521039;XM_013521043;XM_013521052 XP_005374977;XP_005374979;XP_005374983;XP_005374984;XP_013376478;XP_013376488;XP_013376489;XP_013376493;XP_013376497;XP_013376506 MODEL 9060860 protein-coding Parn poly(A)-specific ribonuclease ENCODES a protein that exhibits cation binding (ortholog); poly(A)-specific ribonuclease activity (ortholog); protein kinase binding (ortholog); INVOLVED IN box H/ACA sno(s)RNA 3'-end processing (ortholog); lncRNA processing (ortholog); miRNA catabolic process (ortholog); ASSOCIATED WITH autosomal recessive dyskeratosis congenita 6 (ortholog); dyskeratosis congenita (ortholog); genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); nuclear speck (ortholog); nucleolus (ortholog) NW_004955442 4255726 4421083 + 102016640 AGCD01037525;AGCD01037526;AGCD01037527;GBDF01159761;XM_005391134;XM_005391135;XM_005391140;XM_013517837 XP_005391191;XP_005391192;XP_005391197;XP_013373291 MODEL 39131451 protein-coding LHFPL5 LHFPL tetraspan subfamily member 5 8833003 ncrna LOC102011440 uncharacterized LOC102011440 NW_004955476 3980903 3992756 - 102011440 AGCD01055264;GBDF01249578;XR_263619 MODEL 9033162 protein-coding Pex14 peroxisomal biogenesis factor 14 ENCODES a protein that exhibits beta-tubulin binding (ortholog); identical protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); microtubule anchoring (ortholog); negative regulation of DNA-binding transcription factor activity (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN fibrillar center (ortholog); peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955486 2981026 3129721 - 102014788 AGCD01059013;AGCD01059014;AGCD01059015;AGCD01059016;AGCD01059017;AGCD01059018;GBBH01091917;XM_005404016 XP_005404073 MODEL 9012750 protein-coding Serpina5 serpin family A member 5 ENCODES a protein that exhibits acrosin binding (ortholog); phosphatidylcholine binding (ortholog); protease binding (ortholog); INVOLVED IN negative regulation of hydrolase activity (ortholog); negative regulation of proteolysis (ortholog); seminal vesicle development (ortholog); PARTICIPATES IN fibrinolysis pathway; ASSOCIATED WITH amphetamine abuse (ortholog); Arterial Occlusive Diseases (ortholog); cholestasis (ortholog); FOUND IN acrosomal membrane (ortholog); external side of plasma membrane (ortholog); extracellular exosome (ortholog) NW_004955438 17787398 17796013 - 102019959 AGCD01035451;GBDF01001290;XM_005390388 XP_005390445 MODEL 8715752 protein-coding Rspo2 R-spondin 2 ENCODES a protein that exhibits heparin binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN bone mineralization (ortholog); canonical Wnt signaling pathway (ortholog); dopaminergic neuron differentiation (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Humerofemoral Hypoplasia with Radiotibial Ray Deficiency (ortholog); tetraamelia syndrome 2 (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog) NW_004955417 30643554 30704497 - 102023033 AGCD01018628;GBDK01061470;XM_005382000 XP_005382057 MODEL 8798788 pseudo LOC102019026 poly(rC)-binding protein 1-like NW_004955454 7523214 7539387 - 102019026 AGCD01045300;AGCD01045301 MODEL 8871000 protein-coding Nckap5 NCK associated protein 5 ASSOCIATED WITH amenorrhea (ortholog); proteinuria (ortholog) NW_004955440 266389 1159224 - 102029122 AGCD01036160;AGCD01036161;AGCD01036162;AGCD01036163;AGCD01036164;AGCD01036165;AGCD01036166;AGCD01036167;AGCD01036168;AGCD01036169;AGCD01036170;AGCD01036171;AGCD01036172;AGCD01036173;AGCD01036174;AGCD01036175;AGCD01036176;GBDK01133273;XM_005390736;XM_013517461;XM_013517462;XM_013517463 XP_005390793;XP_013372915;XP_013372916;XP_013372917 MODEL 8913815 ncrna LOC102003684 uncharacterized LOC102003684 NW_004955520 82188 91113 - 102003684 AGCD01068004;GBDI01367358;XR_264580 MODEL 9056345 ncrna LOC102011023 uncharacterized LOC102011023 NW_004955504 1257357 1259714 - 102011023 AGCD01064836;GBDF01264466;XR_264285 MODEL 8779878 pseudo LOC102008390 intraflagellar transport protein 74 homolog pseudogene NW_004955411 1172768 1173854 - 102008390 AGCD01011473 MODEL 8721223 protein-coding Smagp small cell adhesion glycoprotein FOUND IN cell junction (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955547 1742597 1766460 - 102016202 AGCD01072245;GBBH01031858;GBDF01305508;XM_005411960 XP_005412017 MODEL 8975347 ncrna LOC102006516 uncharacterized LOC102006516 NW_004955450 641987 645584 + 102006516 AGCD01042340;GBCE01092145;XR_001235864;XR_262511 MODEL 9012536 protein-coding Picalm phosphatidylinositol binding clathrin assembly protein ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); clathrin binding (ortholog); clathrin heavy chain binding (ortholog); INVOLVED IN amyloid-beta clearance by transcytosis (ortholog); axonogenesis (ortholog); clathrin coat assembly (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); Cognitive Dysfunction (ortholog); FOUND IN cell surface (ortholog); clathrin coat of coated pit (ortholog); clathrin-coated pit (ortholog) NW_004955414 6871220 6970569 + 102013160 AGCD01014940;AGCD01014941;AGCD01014942;AGCD01014943;AGCD01014944;GBCE01054676;GBDF01008904;XM_005379748 XP_005379805 MODEL 8799566 protein-coding Plxna2 plexin A2 ENCODES a protein that exhibits identical protein binding (ortholog); semaphorin receptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); centrosome localization (ortholog); cerebellar granule cell precursor tangential migration (ortholog); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 7 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN plasma membrane (ortholog) NW_004955489 3914137 4116780 + 102027310 AGCD01059895;AGCD01059896;AGCD01059897;GBCE01117243;GBDI01026905;XM_005404545 XP_005404602 MODEL 8733908 ncrna LOC102024306 uncharacterized LOC102024306 NW_004955456 2252901 2273331 - 102024306 AGCD01046252;GBDK01060500;XR_262869 MODEL 8993271 protein-coding LOC102006869 zinc finger protein 14-like NW_004955453 6825362 6828549 + 102006869 AGCD01044731;XM_005395440 XP_005395497 MODEL 8858150 protein-coding Rab36 RAB36, member RAS oncogene family ASSOCIATED WITH chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog); schizophrenia (ortholog) NW_004955455 7574376 7590024 + 102023775 AGCD01045861;GBDI01171154;XM_005396362;XM_005396363;XM_005396364;XM_013520319;XR_262841 XP_005396419;XP_005396420;XP_005396421;XP_013375773 MODEL 9036177 protein-coding LOC102015587 olfactory receptor 2T8-like NW_004955619 202710 203666 - 102015587 AGCD01077348;XM_005415010 XP_005415067 MODEL 8743194 protein-coding Bsdc1 BSD domain containing 1 NW_004955452 10694113 10723342 - 102021513 AGCD01044289;AGCD01044290;GBCQ01037702;XM_005395063 XP_005395120 MODEL 39132093 snorna SNORA61 small nucleolar RNA, H/ACA box 61 8815042 protein-coding LOC102010276 uncharacterized LOC102010276 NW_004955494 4605410 4658564 - 102010276 AGCD01061508;AGCD01061509;XM_013504923 XP_013360377 MODEL 8773874 pseudo LOC102005444 zinc finger protein 649-like NW_004955408 34633994 34635786 + 102005444 AGCD01008914 MODEL 8722127 protein-coding Proca1 protein interacting with cyclin A1 ENCODES a protein that exhibits cyclin binding (ortholog) NW_004955481 4451649 4461296 + 102024675 AGCD01056941;AGCD01056942;GBBH01155525;XM_005402725;XM_005402726;XM_005402728;XM_005402729;XM_005402730;XM_005402731;XM_005402733;XM_005402736;XM_005402737;XM_013503392;XM_013503393;XM_013503394;XM_013503395;XM_013503396;XM_013503397;XM_013503398 XP_005402782;XP_005402783;XP_005402785;XP_005402786;XP_005402787;XP_005402788;XP_005402790;XP_005402793;XP_005402794;XP_013358846;XP_013358847;XP_013358848;XP_013358849;XP_013358850;XP_013358851;XP_013358852 MODEL 8844765 protein-coding LOC102007982 cytochrome P450 2D17-like NW_004955413 27521610 27655636 - 102007982 AGCD01014511;AGCD01014512;AGCD01014513;AGCD01014514;AGCD01014515;AGCD01014516;AGCD01014517;AGCD01014518;AGCD01014519;AGCD01014520;AGCD01014521;AGCD01014522;AGCD01014523;AGCD01014524;AGCD01014525;AGCD01014526;AGCD01014527;AGCD01014528;AGCD01014529;GBDI01255784;XM_013511457;XM_013511458;XM_013511459;XR_001232980 XP_013366911;XP_013366912;XP_013366913 MODEL 10212715 ncrna LOC106147020 uncharacterized LOC106147020 NW_004955511 4950780 4965081 - 106147020 AGCD01066539;AGCD01066540;GBCQ01166532;XR_001231719 MODEL 8800654 ncrna LOC102012650 uncharacterized LOC102012650 NW_004955418 28431582 28460778 - 102012650 AGCD01019438;AGCD01019439;GBDI01285082;XR_001233482;XR_260593 MODEL 9056648 protein-coding Lhfpl6 LHFPL tetraspan subfamily member 6 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955431 6745745 6977662 + 102017595 AGCD01030065;AGCD01030066;AGCD01030067;XM_013515896 XP_013371350 MODEL 8832094 protein-coding Pdcd5 programmed cell death 5 ENCODES a protein that exhibits acetyltransferase activator activity (ortholog); beta-tubulin binding (ortholog); heparin binding (ortholog); INVOLVED IN cellular response to transforming growth factor beta stimulus (ortholog); negative regulation of chaperone-mediated protein folding (ortholog); positive regulation of apoptotic process (ortholog); FOUND IN nucleus (ortholog) NW_004955468 5365137 5372888 - 102003429 AGCD01051964;GBDI01331804;XM_005400088 XP_005400145 MODEL 9022089 protein-coding Pla2g2e phospholipase A2 group IIE ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipase A2 activity (ortholog); INVOLVED IN low-density lipoprotein particle remodeling (ortholog); phosphatidylcholine metabolic process (ortholog); phosphatidylglycerol metabolic process (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog); FOUND IN extracellular region (ortholog) NW_004955452 522314 526095 - 102014971 AGCD01043815;XM_005394667 XP_005394724 MODEL 9004067 protein-coding Psmb10 proteasome 20S subunit beta 10 INVOLVED IN cell morphogenesis (ortholog); T cell proliferation (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN proteasome core complex (ortholog); spermatoproteasome complex (ortholog) NW_004955484 8777618 8780393 + 102019175 AGCD01058396;GBDJ01009560;XM_005403610;XM_005403611;XM_005403612 XP_005403667;XP_005403668;XP_005403669 MODEL 8733592 protein-coding Rdh11 retinol dehydrogenase 11 ENCODES a protein that exhibits aldehyde dehydrogenase (NADP+) activity (ortholog); all-trans-retinol dehydrogenase (NADP+) activity (ortholog); INVOLVED IN cellular detoxification of aldehyde (ortholog); retinal metabolic process (ortholog); retinoid metabolic process (ortholog); PARTICIPATES IN retinoid cycle metabolic pathway; retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH fundus dystrophy (ortholog); Leber congenital amaurosis 13 (ortholog); optic atrophy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); photoreceptor inner segment (ortholog); photoreceptor outer segment membrane (ortholog) NW_004955466 2506641 2521506 + 102011294 AGCD01050740;AGCD01050741;AGCD01050742;GBDI01113403;XM_005399068 XP_005399125 MODEL 8863161 protein-coding Otulinl OTU deubiquitinase with linear linkage specificity like ENCODES a protein that exhibits ubiquitin binding (ortholog); ubiquitin-like protein peptidase activity (ortholog); INVOLVED IN protein deubiquitination (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of endoplasmic reticulum membrane (ortholog); nuclear envelope (ortholog) NW_004955426 3897327 3920631 + 102008963 AGCD01026085;GBCE01055395;XM_005386124 XP_005386181 MODEL 8949887 protein-coding Rhoc ras homolog family member C INVOLVED IN apical junction assembly (ortholog); mitotic cytokinesis (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH amenorrhea (ortholog); breast cancer (ortholog); hereditary spastic paraplegia 47 (ortholog); FOUND IN cleavage furrow (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955435 16115095 16117736 - 102005962 AGCD01033294;GBBH01000714;GBCQ01011782;XM_005388967 XP_005389024 MODEL 8797783 ncrna LOC102017508 uncharacterized LOC102017508 NW_004955441 14129465 14132048 + 102017508 AGCD01037177;GBCQ01032923;XR_001235349;XR_262079 MODEL 9038066 protein-coding Tpk1 thiamin pyrophosphokinase 1 ENCODES a protein that exhibits identical protein binding (ortholog); thiamine diphosphokinase activity (ortholog); UTP thiamine diphosphokinase activity (ortholog); INVOLVED IN regulation of acetyl-CoA biosynthetic process from pyruvate (ortholog); thiamine diphosphate biosynthetic process (ortholog); thiamine metabolic process (ortholog); PARTICIPATES IN thiamine metabolic pathway; ASSOCIATED WITH cortical dysplasia-focal epilepsy syndrome (ortholog); genetic disease (ortholog); Thiamine Metabolism Dysfunction Syndrome 5 (Episodic Encephalopathy Type) (ortholog); FOUND IN cytosol (ortholog) NW_004955491 621941 968570 - 102006924 AGCD01060343;AGCD01060344;AGCD01060345;AGCD01060346;GBBH01166046;XM_005404730;XM_005404732;XM_013504637;XM_013504638;XM_013504639;XM_013504640 XP_005404787;XP_005404789;XP_013360091;XP_013360092;XP_013360093;XP_013360094 MODEL 39133232 snrna U4 U4 spliceosomal RNA 10215002 ncrna LOC106149851 uncharacterized LOC106149851 NW_004955455 3256234 3263488 - 106149851 AGCD01045620;GBBH01153531;XR_001236297 MODEL 9031300 pseudo LOC102017510 prefoldin subunit 4 pseudogene NW_004955442 13301394 13301783 - 102017510 AGCD01037769 MODEL 9003178 protein-coding Srgap2 SLIT-ROBO Rho GTPase activating protein 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN actin filament severing (ortholog); dendritic spine development (ortholog); excitatory synapse assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dendritic spine (ortholog) NW_004955406 41801235 42050731 + 102017302 AGCD01006692;AGCD01006693;AGCD01006694;AGCD01006695;AGCD01006696;GBDF01159814;XM_005375386 XP_005375443 MODEL 8904063 protein-coding Slc25a40 solute carrier family 25 member 40 ENCODES a protein that exhibits glutathione transmembrane transporter activity (ortholog); INVOLVED IN erythrocyte development (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955432 5191197 5244587 - 102016941 AGCD01030767;AGCD01030768;AGCD01030769;GBCQ01073228;GBDF01251683;XM_013516045 XP_013371499 MODEL 8884105 protein-coding Rasal3 RAS protein activator like 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of Ras protein signal transduction (ortholog); positive regulation of NK T cell proliferation (ortholog); ASSOCIATED WITH acute megakaryocytic leukemia (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of membrane (ortholog) NW_004955495 7795619 7808674 + 102019290 AGCD01062164;AGCD01062165;AGCD01062166;GBCE01135351;GBDK01007096;XM_013505123;XM_013505124 XP_013360577;XP_013360578 MODEL 8963787 protein-coding Rhod ras homolog family member D ENCODES a protein that exhibits GTP binding (ortholog); protein kinase binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); actin filament polymerization (ortholog); cell projection assembly (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); immunodeficiency 90 (ortholog); intellectual disability (ortholog); FOUND IN cell projection (ortholog) NW_004955422 18343611 18353269 - 102026536 AGCD01022946;GBCQ01039817;XM_005384359 XP_005384416 MODEL 39133233 snrna U4 U4 spliceosomal RNA 8856041 protein-coding Ptprn protein tyrosine phosphatase receptor type N ENCODES a protein that exhibits GTPase binding (ortholog); protein tyrosine phosphatase activity (ortholog); spectrin binding (ortholog); INVOLVED IN dense core granule maturation (ortholog); insulin secretion (ortholog); insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); autosomal recessive distal hereditary motor neuronopathy 5 (ortholog); cerebrotendinous xanthomatosis (ortholog); FOUND IN axon terminus (ortholog); endosome (ortholog); Golgi apparatus (ortholog) NW_004955453 14126416 14145347 + 102008815 AGCD01044858;GBBH01175455;XM_005395533;XM_005395534;XM_005395537 XP_005395590;XP_005395591;XP_005395594 MODEL 8960403 protein-coding LOC102006871 torsin-1A-interacting protein 2, isoform IFRG15 NW_004955406 19105586 19108003 - 102006871 AGCD01006074;GBDJ01313313;XM_005374968 XP_005375025 MODEL 8893167 protein-coding LOC102017519 vomeronasal type-1 receptor 4-like NW_004955569 1106829 1110875 + 102017519 AGCD01074638;XM_005413518 XP_005413575 MODEL 8753509 protein-coding Pomt2 protein O-mannosyltransferase 2 ENCODES a protein that exhibits mannosyltransferase activity (ortholog); INVOLVED IN basement membrane organization (ortholog); dentate gyrus development (ortholog); positive regulation of protein O-linked glycosylation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2N (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955438 1179064 1218860 - 102013869 AGCD01034976;GBDI01292675;XM_005390192;XM_005390193;XM_005390194 XP_005390249;XP_005390250;XP_005390251 MODEL 8734410 pseudo LOC102019027 28S ribosomal protein S36, mitochondrial pseudogene NW_004955407 3770484 3771274 - 102019027 AGCD01006864 MODEL 8884247 protein-coding Bsg basigin (Ok blood group) ENCODES a protein that exhibits signaling receptor activity (ortholog); virus receptor activity (ortholog); INVOLVED IN decidualization (ortholog); embryo implantation (ortholog); endothelial tube morphogenesis (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); breast ductal carcinoma (ortholog); FOUND IN acrosomal membrane (ortholog); endoplasmic reticulum membrane (ortholog); endosome (ortholog) NW_004955495 7148806 7156296 - 102023491 AGCD01062122;GBCC01008459;XM_005406036;XM_013505312 XP_005406093;XP_013360766 MODEL 8901899 protein-coding Serpina6 serpin family A member 6 ENCODES a protein that exhibits molecular carrier activity (ortholog); steroid binding (ortholog); INVOLVED IN glucocorticoid metabolic process (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); Chemical and Drug Induced Liver Injury (ortholog); corticosteroid-binding globulin deficiency (ortholog); FOUND IN extracellular space (ortholog) NW_004955438 16356600 16380861 - 102014492 AGCD01035406;AGCD01035407;AGCD01035408;XM_013517149 XP_013372603 MODEL 8867124 protein-coding LOC102007986 tripartite motif-containing protein 5-like NW_004955414 21541749 21555056 - 102007986 AGCD01015423;GBCQ01013376;XM_005380093;XM_013512002;XM_013512004 XP_005380150;XP_013367456;XP_013367458 MODEL 9006941 protein-coding Trip10 thyroid hormone receptor interactor 10 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN epithelial to mesenchymal transition (ortholog); negative regulation of cardiac muscle cell apoptotic process (ortholog); positive regulation of cell growth involved in cardiac muscle cell development (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin signaling pathway; ASSOCIATED WITH Diabetic Nephropathies (ortholog); Huntington's disease (ortholog); mucolipidosis type IV (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955495 2770449 2780650 - 102005157 AGCD01061799;GBCE01028494;XM_005405695;XM_005405697 XP_005405752;XP_005405754 MODEL 9058602 protein-coding Lhfpl7 LHFPL tetraspan subfamily member 7 NW_004955455 237462 251622 + 102010867 AGCD01045555;GBCQ01058010;XM_005396133;XM_013520489;XM_013520490;XM_013520491 XP_005396190;XP_013375943;XP_013375944;XP_013375945 MODEL 9043453 protein-coding Wdr20 WD repeat domain 20 ENCODES a protein that exhibits deubiquitinase activator activity (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); Developmental Disabilities (ortholog); immunodeficiency 132A (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955538 1520336 1590824 + 102026907 AGCD01071069;AGCD01071070;AGCD01071071;AGCD01071072;AGCD01071073;AGCD01071074;GBDF01083282;XM_005410738;XM_005410739;XM_005410740;XM_005410743;XM_005410746;XM_005410747;XM_005410748;XM_013507829;XM_013507830;XM_013507831 XP_005410795;XP_005410796;XP_005410797;XP_005410800;XP_005410803;XP_005410804;XP_005410805;XP_013363283;XP_013363284;XP_013363285 MODEL 8949998 protein-coding Snx22 sorting nexin 22 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog) NW_004955450 11246817 11248870 - 102010010 AGCD01042652;GBBH01150804;GBDK01011077;XM_013519037;XM_013519038;XR_001235925 XP_013374491;XP_013374492 MODEL 39132915 snorna SNORD21 Small nucleolar RNA SNORD21 9003733 pseudo LOC102003685 39S ribosomal protein L22, mitochondrial pseudogene NW_004955520 2732442 2737379 + 102003685 AGCD01068082 MODEL 8782984 ncrna LOC102018646 uncharacterized LOC102018646 NW_004955538 2638259 2653814 + 102018646 AGCD01071133;AGCD01071134;GBDK01170259;XR_001232095 MODEL 8781934 pseudo LOC102006517 vegetative cell wall protein gp1-like NW_004955588 440381 447451 - 102006517 AGCD01076110 MODEL 8755833 protein-coding Slc44a5 solute carrier family 44 member 5 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog); ASSOCIATED WITH medium chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN plasma membrane (ortholog) NW_004955423 17260324 17615777 + 102026230 AGCD01023852;AGCD01023853;AGCD01023854;AGCD01023855;AGCD01023856;AGCD01023857;AGCD01023858;GBDF01088885;XM_005385229;XM_013514352;XM_013514353;XM_013514354 XP_005385286;XP_013369806;XP_013369807;XP_013369808 MODEL 8959460 protein-coding Trpv4 transient receptor potential cation channel subfamily V member 4 ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); alpha-tubulin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); ATP export (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 5 (ortholog); Auditory Neuropathy (ortholog); autosomal dominant distal hereditary motor neuronopathy (ortholog); FOUND IN adherens junction (ortholog); apical plasma membrane (ortholog); cell surface (ortholog) NW_004955455 8744865 8781644 + 102018566 AGCD01045908;AGCD01045909;GBCQ01123903;XM_005396446;XM_005396447;XM_013520488 XP_005396503;XP_005396504;XP_013375942 MODEL 10209614 ncrna LOC106149852 uncharacterized LOC106149852 NW_004955406 8288148 8290082 - 106149852 AGCD01005801;GBBH01169863;XR_001236298 MODEL 8700049 ncrna LOC102023286 uncharacterized LOC102023286 NW_004955430 22267648 22322758 + 102023286 AGCD01029783;AGCD01029784;AGCD01029785;AGCD01029786;GBBH01020885;XR_261436 MODEL 8797906 pseudo LOC102021572 10 kDa heat shock protein, mitochondrial pseudogene NW_004955424 22163915 22165511 + 102021572 AGCD01024935 MODEL 8710882 protein-coding Tpm1 tropomyosin 1 ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); cytoskeletal protein binding (ortholog); INVOLVED IN actin filament capping (ortholog); cardiac muscle contraction (ortholog); cellular response to reactive oxygen species (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH atrial heart septal defect 1 (ortholog); Bloom syndrome (ortholog); cardiomyopathy (ortholog); FOUND IN actin cytoskeleton (ortholog); bleb (ortholog); cytoplasm (ortholog) NW_004955450 12197241 12223372 - 102029136 AGCD01042694;AGCD01042695;GBDI01010272;XM_005393795;XM_005393797;XM_005393799;XM_005393800;XM_005393801;XM_013518944;XM_013518945 XP_005393852;XP_005393854;XP_005393856;XP_005393857;XP_005393858;XP_013374398;XP_013374399 MODEL 39133237 snrna U4 U4 spliceosomal RNA 8887040 protein-coding LOC102008392 olfactory receptor 147-like NW_004955412 25370885 25371823 - 102008392 AGCD01013151;XM_005378421 XP_005378478 MODEL 9064714 protein-coding Pla2g2f phospholipase A2 group IIF ENCODES a protein that exhibits calcium-dependent phospholipase A2 activity (ortholog); phospholipase A2 activity (ortholog); INVOLVED IN arachidonate metabolic process (ortholog); negative regulation of T cell proliferation (ortholog); phosphatidylcholine acyl-chain remodeling (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog) NW_004955452 755738 765304 + 102017295 AGCD01043827;GBDF01118116;XM_005394676;XM_013519448 XP_005394733;XP_013374902 MODEL 8736581 protein-coding Psmb11 proteasome subunit beta 11 ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN CD8-positive, alpha-beta T cell differentiation (ortholog); proteolysis (ortholog); T cell differentiation in thymus (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Specific Granule Deficiency (ortholog); FOUND IN proteasome core complex (ortholog) NW_004955409 37260080 37260866 - 102020775 AGCD01010501;GBDI01282560;GBDI01342134;XM_013510447 XP_013365901 MODEL 9000342 pseudo LOC102019040 guanine nucleotide-binding protein G(s) subunit alpha-like NW_004955410 15378838 15386042 - 102019040 AGCD01010925;AGCD01010926;XR_259907 MODEL 39133238 snrna U4 U4 spliceosomal RNA 8876788 ncrna LOC102024316 uncharacterized LOC102024316 NW_004955410 27120738 27127442 + 102024316 AGCD01011209;GBDJ01019626;XR_259870 MODEL 8822599 ncrna LOC102011444 uncharacterized LOC102011444 NW_004955417 7040994 7068069 - 102011444 AGCD01017997;GBDF01260563;XR_260460 MODEL 9001641 protein-coding Pick1 protein interacting with PRKCA 1 ENCODES a protein that exhibits actin filament binding (ortholog); Arp2/3 complex binding (ortholog); cytoskeletal protein binding (ortholog); INVOLVED IN cellular response to decreased oxygen levels (ortholog); cellular response to glucose starvation (ortholog); dendritic spine maintenance (ortholog); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); amphetamine abuse (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955413 24383130 24399092 + 102014342 AGCD01014363;AGCD01014364;GBDI01135012;XM_005379238;XM_005379240 XP_005379295;XP_005379297 MODEL 39133305 snorna SNORA62 Small nucleolar RNA SNORA62/SNORA6 family 8710396 pseudo LOC102005447 rho-associated protein kinase 1-like NW_004955459 1724049 1732649 + 102005447 AGCD01047977 MODEL 9011820 protein-coding Pex16 peroxisomal biogenesis factor 16 INVOLVED IN ER-dependent peroxisome localization (ortholog); ER-dependent peroxisome organization (ortholog); peroxisome membrane biogenesis (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIc (ortholog); genetic disease (ortholog); infantile Refsum disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); peroxisomal membrane (ortholog) NW_004955422 2054867 2060871 + 102016483 AGCD01022478;GBDJ01313533;XM_005384058;XM_005384060;XM_005384061 XP_005384115;XP_005384117;XP_005384118 MODEL 9049093 protein-coding Emp2 epithelial membrane protein 2 ENCODES a protein that exhibits integrin binding (ortholog); kinase binding (ortholog); INVOLVED IN actin filament organization (ortholog); actin-mediated cell contraction (ortholog); apoptotic process (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 1C (ortholog); Landau-Kleffner syndrome (ortholog); MHC class II deficiency (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); caveola (ortholog) NW_004955442 7826967 7862035 + 102009227 AGCD01037628;GBCB01040537;XM_005391190 XP_005391247 MODEL 8927299 protein-coding Rspo3 R-spondin 3 ENCODES a protein that exhibits frizzled binding (ortholog); heparin binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN angiogenesis (ortholog); blood vessel remodeling (ortholog); branching involved in labyrinthine layer morphogenesis (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); hepatocellular carcinoma (ortholog); FOUND IN extracellular region (ortholog) NW_004955436 8151122 8235183 + 102007271 AGCD01033727;AGCD01033728;AGCD01033729;AGCD01033730;AGCD01033731;GBCE01131532;GBDJ01092589;XM_005389165 XP_005389222 MODEL 9015459 protein-coding Srgap3 SLIT-ROBO Rho GTPase activating protein 3 INVOLVED IN regulation of postsynapse assembly (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); Chromosome 3, Monosomy 3p25 (ortholog); intellectual disability (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955561 612152 835209 - 102027910 AGCD01073823;AGCD01073824;AGCD01073825;GBBH01172154;XM_005413001;XM_005413003;XM_013509102;XM_013509103 XP_005413058;XP_005413060;XP_013364556;XP_013364557 MODEL 10332496 ncrna LOC106149853 uncharacterized LOC106149853 NW_004955455 8459568 8466227 + 106149853 AGCD01045894;GBDF01176900;XR_001236299 MODEL 8987697 protein-coding Procr protein C receptor INVOLVED IN negative regulation of coagulation (ortholog); PARTICIPATES IN protease mediated signaling via protease-activated receptor 1; protein C anticoagulant pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); acute kidney failure (ortholog); Acute Lung Injury (ortholog); FOUND IN centrosome (ortholog); extracellular space (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955422 26215757 26220396 - 102014795 AGCD01023281;AGCD01023282;GBBH01160494;GBDK01431932;XM_013514115 XP_013369569 MODEL 8897309 protein-coding Pdcd6 programmed cell death 6 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN apoptotic process (ortholog); cellular response to heat (ortholog); COPII vesicle coating (ortholog); ASSOCIATED WITH dopamine transporter deficiency syndrome (ortholog); interstitial lung disease 2 (ortholog); FOUND IN COPII vesicle coat (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955504 75378 94654 + 102018202 AGCD01064814;GBDF01118861;XM_005406987;XM_005406988;XM_005406990;XM_005406991 XP_005407044;XP_005407045;XP_005407047;XP_005407048 MODEL 8788608 pseudo LOC102017523 KATNB1-like protein 1 pseudogene NW_004955448 11305449 11307654 + 102017523 AGCD01041522 MODEL 8726017 protein-coding Nckap5l NCK associated protein 5 like INVOLVED IN microtubule bundle formation (ortholog); microtubule depolymerization (ortholog); FOUND IN centrosome (ortholog); microtubule plus-end (ortholog) NW_004955547 381338 416658 - 102007942 AGCD01072153;AGCD01072154;GBDJ01280139;XM_005411849;XM_005411850;XM_013508476;XM_013508477;XM_013508478 XP_005411906;XP_005411907;XP_013363930;XP_013363931;XP_013363932 MODEL 8753441 protein-coding Parp1 poly(ADP-ribose) polymerase 1 ENCODES a protein that exhibits chromatin binding (ortholog); damaged DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN apoptotic process (ortholog); ATP generation from poly-ADP-D-ribose (ortholog); base-excision repair (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acute Experimental Pancreatitis (ortholog); acute kidney failure (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955489 520875 557609 - 102011552 AGCD01059808;AGCD01059809;GBDI01133041;XM_005404495 XP_005404552 MODEL 8726600 protein-coding Serpina7 serpin family A member 7 ENCODES a protein that exhibits hormone binding (ortholog); INVOLVED IN post-embryonic development (ortholog); response to corticosterone (ortholog); response to nutrient levels (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); diabetes mellitus (ortholog); FOUND IN extracellular space (ortholog) NW_004955548 2855377 2861946 - 102006287 AGCD01072411;GBDF01025901;XM_005412013 XP_005412070 MODEL 8908140 protein-coding Plxna3 plexin A3 ENCODES a protein that exhibits semaphorin receptor activity (ortholog); INVOLVED IN axon extension involved in axon guidance (ortholog); axon guidance (ortholog); branchiomotor neuron axon guidance (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog) NW_004955580 958033 972123 + 102004213 AGCD01075633;AGCD01075634;GBBH01068132;XM_005414203 XP_005414260 MODEL 8743583 ncrna LOC102010609 uncharacterized LOC102010609 NW_004955508 2826273 2855521 + 102010609 AGCD01065798;GBBH01228727;XR_001231644 MODEL 39133417 snorna SNORD22 Small nucleolar RNA SNORD22 9039655 protein-coding LOC102011841 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial ENCODES a protein that exhibits calcidiol 1-monooxygenase activity (ortholog); secalciferol 1-monooxygenase activity (ortholog); INVOLVED IN bone mineralization (ortholog); calcitriol biosynthetic process from calciol (ortholog); calcium ion homeostasis (ortholog); ASSOCIATED WITH Acidoses (ortholog); acute kidney failure (ortholog); autism spectrum disorder (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog) NW_004955458 5472404 5477001 - 102011841 AGCD01047494;GBDF01140801;XM_005397416 XP_005397473 MODEL 9048358 protein-coding LOC102003687 vomeronasal type-2 receptor 116-like NW_004955524 1903056 1933183 + 102003687 AGCD01068783;AGCD01068784;AGCD01068785;AGCD01068786;AGCD01068787;GBDF01097477;XM_013507191 XP_013362645 MODEL 8857530 pseudo LOC102006520 pinin-like NW_004955402 55201413 55203705 - 102006520 AGCD01001428 MODEL 8821855 protein-coding LOC102010279 guanylate-binding protein 6-like NW_004955423 4800576 4831760 + 102010279 AGCD01023545;AGCD01023546;GBDI01220537;XM_005385092;XM_005385093 XP_005385149;XP_005385150 MODEL 8823405 protein-coding LOC102015588 phosphatidylcholine transfer protein-like NW_004955451 6877991 6908273 - 102015588 AGCD01043213;AGCD01043214;AGCD01043215;AGCD01043216;AGCD01043217;AGCD01043218;GBBH01077365;XM_005394076;XM_005394077;XM_005394078;XM_005394079 XP_005394133;XP_005394134;XP_005394135;XP_005394136 MODEL 8832308 protein-coding LOC102011445 translation initiation factor IF-2-like NW_004955418 844476 848795 + 102011445 AGCD01018691;GBDF01112395;XM_005382047 XP_005382104 MODEL 10127639 protein-coding LOC106147021 uncharacterized LOC106147021 NW_004955511 4563294 4570763 - 106147021 AGCD01066515;GBBH01102995;XM_013506520;XM_013506521;XM_013506522;XM_013506523 XP_013361974;XP_013361975;XP_013361976;XP_013361977 MODEL 8899079 protein-coding LOC102009491 olfactory receptor 52N1-like NW_004955414 21756367 21757263 - 102009491 AGCD01015432;XM_013511765 XP_013367219 MODEL 8773245 protein-coding Pon1 paraoxonase 1 ENCODES a protein that exhibits acyl-L-homoserine-lactone lactonohydrolase activity (ortholog); aryldialkylphosphatase activity (ortholog); arylesterase activity (ortholog); INVOLVED IN carboxylic acid catabolic process (ortholog); cholesterol metabolic process (ortholog); lactone catabolic process (ortholog); PARTICIPATES IN clopidogrel pharmacodynamics pathway; clopidogrel pharmacokinetics pathway; organophosphate response pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acute Coronary Syndrome (ortholog); acute lymphoblastic leukemia (ortholog); FOUND IN extracellular space (ortholog); high-density lipoprotein particle (ortholog); spherical high-density lipoprotein particle (ortholog) NW_004955432 11893473 11923035 - 102016942 AGCD01030957;GBBH01000456;XM_005388060;XM_005388062 XP_005388117;XP_005388119 MODEL 8808078 protein-coding Rdh12 retinol dehydrogenase 12 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); all-trans-retinol dehydrogenase (NADP+) activity (ortholog); INVOLVED IN cellular detoxification of aldehyde (ortholog); retinol metabolic process (ortholog); visual perception (ortholog); PARTICIPATES IN altered retinoid cycle metabolic pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH cone-rod dystrophy (ortholog); Eye Abnormalities (ortholog); fundus dystrophy (ortholog); FOUND IN photoreceptor inner segment (ortholog) NW_004955466 2473145 2485779 - 102010351 AGCD01050739;GBCE01139121;XM_005399065 XP_005399122 MODEL 8898835 protein-coding Pex19 peroxisomal biogenesis factor 19 ENCODES a protein that exhibits ATPase binding (ortholog); peroxisome membrane class-1 targeting sequence binding (ortholog); protein carrier chaperone (ortholog); INVOLVED IN chaperone-mediated protein folding (ortholog); establishment of protein localization to peroxisome (ortholog); peroxisome fission (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); familial hemiplegic migraine (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN brush border membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955468 12049043 12057751 - 102016796 AGCD01052140;GBDF01003256;XM_005400203;XM_013522490 XP_005400260;XP_013377944 MODEL 9045296 protein-coding Otx1 orthodenticle homeobox 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); diencephalon morphogenesis (ortholog); forebrain development (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog) NW_004955424 21140038 21147268 - 102015125 AGCD01024895;GBDI01218798;XM_005385723;XM_013514745 XP_005385780;XP_013370199 MODEL 10143985 ncrna LOC106149854 uncharacterized LOC106149854 NW_004955406 8841469 8881360 + 106149854 AGCD01005808;AGCD01005809;AGCD01005810;XR_001236301 MODEL 8845227 protein-coding Trip11 thyroid hormone receptor interactor 11 ENCODES a protein that exhibits ATPase binding (ortholog); INVOLVED IN bone development (ortholog); cartilage development (ortholog); chondrocyte differentiation involved in endochondral bone morphogenesis (ortholog); ASSOCIATED WITH achondrogenesis (ortholog); achondrogenesis type IA (ortholog); autism spectrum disorder (ortholog); FOUND IN acrosomal membrane (ortholog); cilium (ortholog); cis-Golgi network (ortholog) NW_004955438 14327400 14394022 - 102022016 AGCD01035343;AGCD01035344;AGCD01035345;GBDK01231119;XM_013517219 XP_013372673 MODEL 8889987 pseudo LOC102019041 uncharacterized protein C6orf106 homolog NW_004955464 370613 382428 - 102019041 AGCD01049934;AGCD01049935 MODEL 8791327 protein-coding LOC102018647 uncharacterized LOC102018647 NW_004955538 3457041 3463322 - 102018647 AGCD01071164;GBDI01201463;XM_013507825 XP_013363279 MODEL 9002280 protein-coding LOC102008394 arachidonate 12-lipoxygenase, 12S-type NW_004955467 9919322 9931806 - 102008394 AGCD01051535;AGCD01051536;GBBH01140041;XM_005399578 XP_005399635 MODEL 8828098 protein-coding Rab37 RAB37, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); INVOLVED IN positive regulation of autophagy (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment (ortholog); secretory granule (ortholog) NW_004955553 1580234 1638290 + 102010638 AGCD01072892;AGCD01072893;GBDJ01241647;XM_005412240;XM_005412241;XM_005412242;XM_005412243;XM_013508642 XP_005412297;XP_005412298;XP_005412299;XP_005412300;XP_013364096 MODEL 8791883 protein-coding LOC102012651 olfactory receptor 5V1-like NW_004955418 30263575 30290368 + 102012651 AGCD01019508;AGCD01019509;AGCD01019510;AGCD01019511;XM_005382371 XP_005382428 MODEL 9005425 protein-coding LOC102006874 immunoglobulin omega chain-like NW_004955455 6441139 6441749 + 102006874 AGCD01045796;GBDI01034310;XM_005396571 XP_005396628 MODEL 8877441 protein-coding Serpina9 serpin family A member 9 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); ASSOCIATED WITH DICER1 syndrome (ortholog); pleuropulmonary blastoma (ortholog) NW_004955438 17862064 17875490 + 102020957 AGCD01035456;XM_013517148 XP_013372602 MODEL 8835147 protein-coding Trpv6 transient receptor potential cation channel subfamily V member 6 ENCODES a protein that exhibits calcium channel activity (ortholog); calmodulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); calcium ion import (ortholog); calcium ion import across plasma membrane (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH genetic disease (ortholog); gestational diabetes (ortholog); Hereditary Pancreatitis (ortholog); FOUND IN calcium channel complex (ortholog); plasma membrane (ortholog) NW_004955494 820801 835931 - 102004942 AGCD01061385;AGCD01061386;GBCE01039170;XM_005405387 XP_005405444 MODEL 9021138 protein-coding Rhof ras homolog family member F, filopodia associated INVOLVED IN actin filament organization (ortholog); ASSOCIATED WITH immunodeficiency 9 (ortholog); short chain acyl-CoA dehydrogenase deficiency (ortholog) NW_004955482 6631327 6643634 + 102003447 AGCD01057408;AGCD01057409;GBBH01188779;GBDF01044096;XM_005403257 XP_005403314 MODEL 39132051 snorna SNORA62 Small nucleolar RNA SNORA62/SNORA6 family 8947444 pseudo LOC102011024 cyclin-G1-like NW_004955505 3590543 3591876 + 102011024 AGCD01065032 MODEL 8716548 protein-coding LOC102005449 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955460 10831510 10832892 + 102005449 AGCD01048617;XM_013521142 XP_013376596 MODEL 8858668 protein-coding LOC102011844 cytochrome c oxidase assembly factor 1 homolog INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytosol (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955460 182778 285053 + 102011844 AGCD01048337;AGCD01048338;AGCD01048339;GBDF01047278;XM_005397712 XP_005397769 MODEL 9013929 protein-coding Ptprn2 protein tyrosine phosphatase receptor type N2 INVOLVED IN insulin secretion involved in cellular response to glucose stimulus (ortholog); negative regulation of GTPase activity (ortholog); neurotransmitter secretion (ortholog); ASSOCIATED WITH autistic disorder (ortholog); holoprosencephaly 3 (ortholog); prediabetes syndrome (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog); presynapse (ortholog); receptor complex (ortholog) NW_004955579 366441 862837 - 102006083 AGCD01075546;AGCD01075547;AGCD01075548;AGCD01075549;AGCD01075550;AGCD01075551;AGCD01075552;AGCD01075553;AGCD01075554;AGCD01075555;AGCD01075556;AGCD01075557;GBDF01250942;XM_005414104 XP_005414161 MODEL 9040127 protein-coding Smap1 small ArfGAP 1 ENCODES a protein that exhibits clathrin binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); positive regulation of erythrocyte differentiation (ortholog); regulation of clathrin-dependent endocytosis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955488 5758682 5866883 + 102028976 AGCD01059634;AGCD01059635;AGCD01059636;AGCD01059637;GBDJ01179960;XM_005404477;XM_013504418;XM_013504419;XM_013504420;XM_013504421;XM_013504422;XM_013504423;XM_013504424;XM_013504425 XP_005404534;XP_013359872;XP_013359873;XP_013359874;XP_013359875;XP_013359876;XP_013359877;XP_013359878;XP_013359879 MODEL 8771442 pseudo LOC102015595 probable dimethyladenosine transferase pseudogene NW_004955404 2498803 2503708 + 102015595 AGCD01003259 MODEL 8958279 protein-coding Srgn serglycin ENCODES a protein that exhibits collagen binding (ortholog); INVOLVED IN granzyme-mediated programmed cell death signaling pathway (ortholog); maintenance of granzyme B location in T cell secretory granule (ortholog); maintenance of protease location in mast cell secretory granule (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN extracellular space (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955437 21954837 21966552 - 102026156 AGCD01034925;GBDI01004036;XM_005390096 XP_005390153 MODEL 8753367 protein-coding Rab38 RAB38, member RAS oncogene family ENCODES a protein that exhibits AP-1 adaptor complex binding (ortholog); AP-2 adaptor complex binding (ortholog); AP-3 adaptor complex binding (ortholog); INVOLVED IN endosome to melanosome transport (ortholog); melanosome assembly (ortholog); mitochondrion organization (ortholog); ASSOCIATED WITH Albuminuria (ortholog); Hermansky-Pudlak syndrome (ortholog); intellectual disability (ortholog); FOUND IN cell body (ortholog); early endosome (ortholog); early endosome lumen (ortholog) NW_004955414 5158860 5214108 + 102006016 AGCD01014888;AGCD01014889;GBCQ01095846;XM_005379731 XP_005379788 MODEL 8852299 protein-coding Lhpp phospholysine phosphohistidine inorganic pyrophosphate phosphatase ENCODES a protein that exhibits inorganic diphosphate phosphatase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN phosphate-containing compound metabolic process (ortholog); FOUND IN cytosol (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955477 2480660 2606887 + 102003234 AGCD01055523;AGCD01055524;AGCD01055525;GBDI01228294;XM_005401973 XP_005402030 MODEL 8714882 protein-coding Pdcd6ip programmed cell death 6 interacting protein ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); identical protein binding (ortholog); protein dimerization activity (ortholog); INVOLVED IN actomyosin contractile ring assembly (ortholog); bicellular tight junction assembly (ortholog); extracellular exosome biogenesis (ortholog); ASSOCIATED WITH osteoarthritis (ortholog); primary autosomal recessive microcephaly 29 (ortholog); FOUND IN actomyosin (ortholog); cytosol (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955421 1034843 1109637 + 102022707 AGCD01021587;AGCD01021588;GBDI01120341;XM_005383657;XM_005383658 XP_005383714;XP_005383715 MODEL 8699845 protein-coding Prodh2 proline dehydrogenase 2 ENCODES a protein that exhibits oxidoreductase activity, acting on the CH-NH group of donors (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); Experimental Liver Cirrhosis (ortholog); hereditary spastic paraplegia 75 (ortholog) NW_004955468 2747870 2754621 + 102017216 AGCD01051834;AGCD01051835;GBCQ01009142;XM_005399947 XP_005400004 MODEL 39133240 snrna U4 U4 spliceosomal RNA 8852099 ncrna LOC102024319 uncharacterized LOC102024319 NW_004955411 4969494 4972069 - 102024319 AGCD01011592;XR_259917 MODEL 8962200 protein-coding Snx24 sorting nexin 24 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog); ASSOCIATED WITH Congenital Lower Urinary Tract Obstruction (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955521 1006353 1126062 + 102021382 AGCD01068167;AGCD01068168;AGCD01068169;AGCD01068170;AGCD01068171;AGCD01068172;AGCD01068173;GBCB01022225;XM_013507082;XM_013507083;XM_013507084 XP_013362536;XP_013362537;XP_013362538 MODEL 8720790 protein-coding Nckipsd NCK interacting protein with SH3 domain INVOLVED IN positive regulation of neuron projection development (ortholog); regulation of postsynapse assembly (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); FOUND IN COP9 signalosome (ortholog); glutamatergic synapse (ortholog); nucleoplasm (ortholog) NW_004955532 755997 766202 - 102030664 AGCD01070151;AGCD01070152;GBDI01323136;XM_005410166;XM_013507637;XM_013507638 XP_005410223;XP_013363091;XP_013363092 MODEL 8785865 protein-coding Rasd1 ras related dexamethasone induced 1 INVOLVED IN negative regulation of DNA-templated transcription (ortholog); nitric oxide mediated signal transduction (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); common variable immunodeficiency 2 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955577 452993 454659 + 102018241 AGCD01075396;GBCB01059855;GBDJ01004132;XM_005413972 XP_005414029 MODEL 9004566 protein-coding Tigit T cell immunoreceptor with Ig and ITIM domains ENCODES a protein that exhibits identical protein binding (ortholog); signaling receptor activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN negative regulation of interleukin-12 production (ortholog); negative regulation of natural killer cell mediated cytotoxicity (ortholog); negative regulation of T cell activation (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955427 14358326 14381074 + 102009969 AGCD01027271;GBBH01008722;XM_005386413 XP_005386470 MODEL 9046582 protein-coding Plxna4 plexin A4 ENCODES a protein that exhibits semaphorin receptor activity (ortholog); INVOLVED IN anterior commissure morphogenesis (ortholog); axon guidance (ortholog); branchiomotor neuron axon guidance (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cerebellar climbing fiber to Purkinje cell synapse (ortholog) NW_004955410 35281042 35714094 + 102006641 AGCD01011410;AGCD01011411;AGCD01011412;AGCD01011413;GBDF01057223;XM_005377544;XM_005377545;XM_013510647 XP_005377601;XP_005377602;XP_013366101 MODEL 8712001 protein-coding Emp3 epithelial membrane protein 3 (MAM blood group) INVOLVED IN apoptotic process (ortholog); bleb assembly (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955559 2117200 2121366 - 102012480 AGCD01073691;GBDJ01005369;XM_005412959;XM_013509045 XP_005413016;XP_013364499 MODEL 9059253 protein-coding Rspo4 R-spondin 4 INVOLVED IN nail development (ortholog); positive regulation of Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH genetic disease (ortholog); nonsyndromic congenital nail disorder 4 (ortholog) NW_004955596 265282 295283 - 102009786 AGCD01076512;AGCD01076513;AGCD01076514;GBCE01111001;XM_005414687 XP_005414744 MODEL 8855320 pseudo LOC102009492 RNA-binding protein with serine-rich domain 1 pseudogene NW_004955415 3192634 3193526 - 102009492 AGCD01015927 MODEL 8757763 protein-coding Plxnb1 plexin B1 ENCODES a protein that exhibits GTPase activating protein binding (ortholog); semaphorin receptor activity (ortholog); INVOLVED IN inhibitory synapse assembly (ortholog); negative regulation of cell adhesion (ortholog); negative regulation of osteoblast proliferation (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog); postsynaptic membrane (ortholog) NW_004955532 471652 499525 - 102024379 AGCD01070126;AGCD01070127;GBDI01012767;XM_005410146;XM_005410147;XM_013507607 XP_005410203;XP_005410204;XP_013363061 MODEL 8748329 protein-coding Pon2 paraoxonase 2 ENCODES a protein that exhibits acyl-L-homoserine-lactone lactonohydrolase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN lactone catabolic process (ortholog); response to oxidative stress (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); autism spectrum disorder (ortholog); FOUND IN plasma membrane (ortholog) NW_004955432 11988009 12020702 - 102018011 AGCD01030958;AGCD01030959;AGCD01030960;GBBH01032040;XM_005388064 XP_005388121 MODEL 9029295 protein-coding Pla2g3 phospholipase A2 group III ENCODES a protein that exhibits calcium-dependent phospholipase A2 activity (ortholog); phospholipase activity (ortholog); INVOLVED IN acrosome assembly (ortholog); cell development (ortholog); cell maturation (ortholog); FOUND IN centriole (ortholog); recycling endosome (ortholog) NW_004955455 5314520 5320151 - 102004676 AGCD01045720;GBCC01027921;XM_005396297;XM_013520479;XM_013520480 XP_005396354;XP_013375933;XP_013375934 MODEL 8999041 protein-coding Slc45a1 solute carrier family 45 member 1 ENCODES a protein that exhibits D-glucose:proton symporter activity (ortholog); galactose:proton symporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); galactose transmembrane transport (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); INTELLECTUAL DEVELOPMENTAL DISORDER WITH NEUROPSYCHIATRIC FEATURES (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955486 4701889 4732008 - 102023605 AGCD01059063;AGCD01059064;AGCD01059065;AGCD01059066;GBDF01222620;GBDJ01042970;XM_013504132 XP_013359586 MODEL 10234133 ncrna LOC106149855 uncharacterized LOC106149855 NW_004955406 8907719 8915013 - 106149855 AGCD01005810;GBDF01127928;XR_001236302 MODEL 8815284 pseudo LOC102021576 39S ribosomal protein L32, mitochondrial pseudogene NW_004955426 18028126 18029000 + 102021576 AGCD01026510 MODEL 9005530 protein-coding LOC102010611 olfactory receptor 1013-like NW_004955511 1796248 1797165 + 102010611 AGCD01066380;XM_005407977 XP_005408034 MODEL 8904760 ncrna LOC102023289 uncharacterized LOC102023289 NW_004955433 3439691 3546036 + 102023289 AGCD01031428;AGCD01031429;AGCD01031430;GBDF01014489;XR_001234738;XR_001234739 MODEL 9055829 pseudo LOC102019042 proteasome assembly chaperone 2 pseudogene NW_004955411 23260964 23261773 + 102019042 AGCD01012104 MODEL 8976729 protein-coding Pid1 phosphotyrosine interaction domain containing 1 INVOLVED IN cellular response to cytokine stimulus (ortholog); cellular response to fatty acid (ortholog); cellular response to interleukin-6 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955453 5680418 5913236 + 102005004 AGCD01044712;AGCD01044713;AGCD01044714;GBDJ01190629;XM_013519988 XP_013375442 MODEL 8965912 protein-coding LOC102008396 apolipoprotein L6-like NW_004955413 21987513 22022979 + 102008396 AGCD01014278;AGCD01014279;GBDF01146804;XM_013511275 XP_013366729 MODEL 10372010 protein-coding LOC106147022 translation initiation factor IF-2-like NW_004955512 3889328 3891040 - 106147022 AGCD01066713;GBDK01225034;XM_013506524 XP_013361978 MODEL 8935659 pseudo LOC102006522 60S ribosomal protein L27a pseudogene NW_004955402 43985649 43988282 - 102006522 AGCD01001085;XM_005373176 MODEL 9036915 pseudo LOC102010280 tubulin-folding cofactor B pseudogene NW_004955495 5024249 5025001 + 102010280 AGCD01061970 MODEL 8773420 pseudo LOC102006876 heterogeneous nuclear ribonucleoprotein D-like pseudogene NW_004955407 20847561 20859445 - 102006876 AGCD01007345 MODEL 8831336 protein-coding Tpm2 tropomyosin 2 ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); identical protein binding (ortholog); INVOLVED IN regulation of ATP-dependent activity (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); arthrogryposis multiplex congenita (ortholog); FOUND IN actin cytoskeleton (ortholog) NW_004955472 611079 617823 + 102010052 AGCD01053342;GBBH01001449;GBCB01010777;XM_013522938;XM_013522939;XM_013522941;XM_013522942 XP_013378392;XP_013378393;XP_013378395;XP_013378396 MODEL 9065200 protein-coding Timd4 T cell immunoglobulin and mucin domain containing 4 ENCODES a protein that exhibits phosphatidylserine binding (ortholog); INVOLVED IN apoptotic cell clearance (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); lymphoproliferative syndrome 1 (ortholog); ovarian cyst (ortholog) NW_004955408 10969413 10998042 - 102019476 AGCD01008280;AGCD01008281;AGCD01008282;GBBH01126834;XM_013506889;XM_013506895;XM_013506900 XP_013362343;XP_013362349;XP_013362354 MODEL 8776912 ncrna LOC102005450 uncharacterized LOC102005450 NW_004955409 37458586 37465397 - 102005450 AGCD01010520;GBDJ01346495;XR_001232672;XR_259810 MODEL 8832307 pseudo LOC102011028 40S ribosomal protein S8 pseudogene NW_004955510 5851568 5852288 - 102011028 AGCD01066294 MODEL 8738985 ncrna LOC102011849 uncharacterized LOC102011849 NW_004955411 18463238 18501880 - 102011849 AGCD01012008;AGCD01012009;GBDI01303319;XR_259937 MODEL 8817295 protein-coding Pidd1 p53-induced death domain protein 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); INVOLVED IN apoptotic process (ortholog); apoptotic signaling pathway (ortholog); DNA damage response (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 75 (ortholog); Beckwith-Wiedemann syndrome (ortholog); Chanarin-Dorfman syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endopeptidase complex (ortholog) NW_004955476 11325877 11331447 + 102009941 AGCD01055449;AGCD01055450;GBDK01398145;XM_013502998 XP_013358452 MODEL 8790057 protein-coding Wdr24 WD repeat domain 24 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to nutrient levels (ortholog); positive regulation of protein kinase activity (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 16 (ortholog); cerebellar ataxia type 48 (ortholog); epilepsy (ortholog); FOUND IN cytosol (ortholog); GATOR2 complex (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955442 16513074 16519296 + 102019336 AGCD01037901;GBDJ01084560;XM_005391617;XM_005391618 XP_005391674;XP_005391675 MODEL 8992577 protein-coding Pex2 peroxisomal biogenesis factor 2 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); cellular response to reactive oxygen species (ortholog); cholesterol homeostasis (ortholog); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); peroxisomal biogenesis disorder (ortholog); FOUND IN Cdc73/Paf1 complex (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955444 3811972 3830666 + 102015782 AGCD01038797;GBDF01195338;XM_005392068;XM_005392069 XP_005392125;XP_005392126 MODEL 8951540 pseudo LOC102015596 60S acidic ribosomal protein P1 pseudogene NW_004955452 7589803 7590997 - 102015596 AGCD01044174;XM_005394950 MODEL 8715298 protein-coding Ptpro protein tyrosine phosphatase receptor type O ENCODES a protein that exhibits cadherin binding (ortholog); protein homodimerization activity (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN axon guidance (ortholog); cell morphogenesis (ortholog); glomerulus development (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN apical plasma membrane (ortholog); dendritic spine (ortholog); GABA-ergic synapse (ortholog) NW_004955413 12019026 12248026 + 102005022 AGCD01013977;AGCD01013978;AGCD01013979;AGCD01013980;AGCD01013981;AGCD01013982;AGCD01013983;AGCD01013984;AGCD01013985;GBDJ01377144;XM_005379017;XM_013511680;XM_013511681 XP_005379074;XP_013367134;XP_013367135 MODEL 9043789 pseudo LOC102009499 60S ribosomal protein L17 pseudogene NW_004955417 3418704 3419219 - 102009499 AGCD01017914 MODEL 8944969 protein-coding Lhx1 LIM homeobox 1 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN anatomical structure formation involved in morphogenesis (ortholog); anatomical structure morphogenesis (ortholog); anterior/posterior axis specification (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 17q12 deletion syndrome (ortholog); FOUND IN nucleus (ortholog); protein-containing complex (ortholog); transcription regulator complex (ortholog) NW_004955451 1037936 1048501 - 102028487 AGCD01042958;GBCQ01073234;XM_005393940 XP_005393997 MODEL 8745669 pseudo LOC102018653 uncharacterized protein C1orf131 homolog pseudogene NW_004955551 792384 801724 - 102018653 AGCD01072674;AGCD01072675 MODEL 39133420 snorna SNORD22 Small nucleolar RNA SNORD22 8766720 protein-coding Trip12 thyroid hormone receptor interactor 12 ENCODES a protein that exhibits nuclear thyroid hormone receptor binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN DNA repair-dependent chromatin remodeling (ortholog); heterochromatin boundary formation (ortholog); protein polyubiquitination (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH Clark-Baraitser syndrome (ortholog); Developmental Disease (ortholog); genetic disease (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955453 5132776 5272250 + 102029932 AGCD01044705;AGCD01044706;GBDF01007218;XM_005395422;XM_005395424;XM_005395425;XM_005395426;XM_005395427;XM_005395428;XM_005395429;XM_005395430;XM_013519820;XM_013519821;XM_013519822 XP_005395479;XP_005395481;XP_005395482;XP_005395483;XP_005395484;XP_005395485;XP_005395486;XP_005395487;XP_013375274;XP_013375275;XP_013375276 MODEL 8763906 protein-coding Pon3 paraoxonase 3 ENCODES a protein that exhibits acyl-L-homoserine-lactone lactonohydrolase activity (ortholog); arylesterase activity (ortholog); dihydrocoumarin hydrolase activity (ortholog); INVOLVED IN carboxylic acid catabolic process (ortholog); coumarin catabolic process (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); atherosclerosis (ortholog); FOUND IN extracellular space (ortholog) NW_004955432 11945383 11983417 - 102017689 AGCD01030957;AGCD01030958;GBDJ01087076;XM_005388063 XP_005388120 MODEL 8867797 protein-coding LOC102003691 vomeronasal type-2 receptor 116-like NW_004955532 145761 208308 + 102003691 AGCD01070101;AGCD01070102;AGCD01070103;AGCD01070104;AGCD01070105;AGCD01070106;AGCD01070107;AGCD01070108;AGCD01070109;AGCD01070110;XM_013507569 XP_013363023 MODEL 8854453 pseudo LOC102007993 28S ribosomal protein S36, mitochondrial pseudogene NW_004955474 11143140 11143451 - 102007993 AGCD01054611;XM_005401469 MODEL 8920635 protein-coding Ncl nucleolin ENCODES a protein that exhibits calcium ion binding (ortholog); DNA topoisomerase binding (ortholog); ErbB-4 class receptor binding (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to epidermal growth factor stimulus (ortholog); cellular response to leukemia inhibitory factor (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH Animal Disease Models (ortholog); autistic disorder (ortholog); hereditary spastic paraplegia (ortholog); FOUND IN cell cortex (ortholog); cell surface (ortholog); chromosome (ortholog) NW_004955453 4154627 4164253 + 102021084 AGCD01044681;AGCD01044682;GBDF01051740;XM_005395394;XM_013519931 XP_005395451;XP_013375385 MODEL 39132049 snorna SNORA62 Small nucleolar RNA SNORA62/SNORA6 family 8856865 protein-coding Rhog ras homolog family member G ENCODES a protein that exhibits GTPase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); activation of GTPase activity (ortholog); cell chemotaxis (ortholog); ASSOCIATED WITH delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955414 19630564 19641722 - 102010894 AGCD01015326;GBCE01032932;XM_005380036;XM_005380037 XP_005380093;XP_005380094 MODEL 8977005 protein-coding Slc25a41 solute carrier family 25 member 41 ENCODES a protein that exhibits ADP transmembrane transporter activity (ortholog); ATP transmembrane transporter activity (ortholog); INVOLVED IN ADP transport (ortholog); ATP transport (ortholog); mitochondrial ADP transmembrane transport (ortholog); ASSOCIATED WITH mucolipidosis type IV (ortholog); FOUND IN mitochondrion (ortholog) NW_004955495 3175892 3182637 + 102013733 AGCD01061833;GBDF01010067;XM_005405722 XP_005405779 MODEL 8744441 protein-coding Parp10 poly(ADP-ribose) polymerase family member 10 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); K63-linked polyubiquitin modification-dependent protein binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); INVOLVED IN chromatin organization (ortholog); negative regulation of fibroblast proliferation (ortholog); negative regulation of gene expression (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); Developmental Disabilities (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955454 2644718 2651962 - 102018889 AGCD01045026;GBDI01223645;XM_005395834 XP_005395891 MODEL 8846327 protein-coding LOC102006523 uncharacterized LOC102006523 NW_004955602 502456 576189 - 102006523 AGCD01076789;AGCD01076790;AGCD01076791;AGCD01076792;AGCD01076793;AGCD01076794;AGCD01076795;AGCD01076796;AGCD01076797;AGCD01076798;AGCD01076799;XM_013510077 XP_013365531 MODEL 8787380 protein-coding Smap2 small ArfGAP2 ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955537 203252 249694 + 102025395 AGCD01070855;AGCD01070856;GBDK01081285;XM_005410555;XM_013507809 XP_005410612;XP_013363263 MODEL 8828714 pseudo LOC102005452 protein kinase C iota type pseudogene NW_004955411 3980164 3982123 - 102005452 AGCD01011566 MODEL 8735602 protein-coding Rab39a RAB39A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); INVOLVED IN autophagosome-lysosome fusion (ortholog); phagosome acidification (ortholog); phagosome-lysosome fusion (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); FOUND IN autolysosome membrane (ortholog); lysosomal membrane (ortholog); phagocytic vesicle (ortholog) NW_004955412 10224074 10240270 + 102004366 AGCD01012762;GBDF01262894;XM_013510971 XP_013366425 MODEL 10228599 protein-coding Pdcd7 programmed cell death 7 INVOLVED IN positive regulation of apoptotic signaling pathway (ortholog); positive regulation of T cell apoptotic process (ortholog); response to glucocorticoid (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); nemaline myopathy 6 (ortholog); FOUND IN spliceosomal complex (ortholog); U12-type spliceosomal complex (ortholog); U2AF complex (ortholog) NW_004955450 10294184 10307234 + 106146308 AGCD01042609;AGCD01042610;GBCE01152997;GBDF01253203;XM_013518970 XP_013374424 MODEL 9053255 protein-coding LOC102024325 olfactory receptor 149 NW_004955412 24877990 24878925 + 102024325 AGCD01013130;XM_005378640 XP_005378697 MODEL 9035295 pseudo LOC102011448 60S ribosomal protein L5-like NW_004955419 28970094 28970946 - 102011448 AGCD01020481 MODEL 8975061 protein-coding Plxnb2 plexin B2 ENCODES a protein that exhibits semaphorin receptor activity (ortholog); signaling receptor activity (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN brain development (ortholog); excitatory synapse assembly (ortholog); homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog); FOUND IN plasma membrane (ortholog) NW_004955413 33297617 33314371 - 102025673 AGCD01014662;GBDI01012765;GBDJ01023023;XM_005379555 XP_005379612 MODEL 8953266 protein-coding Snx25 sorting nexin 25 ENCODES a protein that exhibits type I transforming growth factor beta receptor binding (ortholog); INVOLVED IN negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); receptor catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); dilated cardiomyopathy (ortholog); Herpes Simplex Encephalitis 1 (ortholog); FOUND IN endosome (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955403 23678301 23787256 - 102028603 AGCD01002250;AGCD01002251;AGCD01002252;AGCD01002253;AGCD01002254;GBDK01250049;XM_005373470;XM_013512963;XM_013512965 XP_005373527;XP_013368417;XP_013368419 MODEL 9040254 protein-coding LOC102009503 olfactory receptor 2V2 NW_004955483 151790 152737 + 102009503 AGCD01057601;XM_005403270 XP_005403327 MODEL 8936266 protein-coding LOC102010612 olfactory receptor 10AG1-like NW_004955511 892359 900459 - 102010612 AGCD01066346;XM_005408216 XP_005408273 MODEL 8862637 ncrna LOC102021581 uncharacterized LOC102021581 NW_004955506 2880718 2891543 + 102021581 AGCD01065304;GBCB01073532;XR_264339 MODEL 9013998 protein-coding Rasd2 RASD family member 2 ENCODES a protein that exhibits G-protein beta-subunit binding (ortholog); GTP binding (ortholog); phosphatidylinositol 3-kinase binding (ortholog); INVOLVED IN locomotory behavior (ortholog); negative regulation of protein ubiquitination (ortholog); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); FOUND IN plasma membrane (ortholog) NW_004955405 43191530 43196057 + 102009248 AGCD01005602;GBCE01039258;GBDF01077051;XM_005374667 XP_005374724 MODEL 39131444 protein-coding PSMB11 proteasome subunit beta 11 8807764 protein-coding LOC102023290 uncharacterized LOC102023290 NW_004955434 20395566 20418779 + 102023290 AGCD01032616;GBDI01228699;XM_013516290;XM_013516291;XR_261634 XP_013371744;XP_013371745 MODEL 8816075 protein-coding Serpinb1 serpin family B member 1 ENCODES a protein that exhibits peptidase inhibitor activity (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN cellular homeostasis (ortholog); inflammatory response (ortholog); negative regulation of cell migration (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); extracellular region (ortholog) NW_004955465 10541562 10551417 + 102025988 AGCD01050510;GBDI01218214;XM_005398929 XP_005398986 MODEL 8706833 protein-coding LOC102019044 serpin B6 NW_004955465 10220475 10248997 + 102019044 AGCD01050504;AGCD01050505;AGCD01050506;GBCE01029516;XM_005398908;XM_005398909 XP_005398965;XP_005398966 MODEL 8726437 protein-coding Lhx2 LIM homeobox 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN anatomical structure formation involved in morphogenesis (ortholog); axon extension (ortholog); axon guidance (ortholog); ASSOCIATED WITH rheumatoid arthritis (ortholog); FOUND IN nucleus (ortholog) NW_004955419 3999364 4019543 - 102025581 AGCD01019745;AGCD01019746;AGCD01019747;GBBH01168279;GBDF01257508;XM_005382498 XP_005382555 MODEL 10173052 ncrna LOC106147023 uncharacterized LOC106147023 NW_004955512 3859179 3881929 - 106147023 AGCD01066712;AGCD01066713;XR_001231720 MODEL 8926172 ncrna LOC102010281 uncharacterized LOC102010281 NW_004955497 1128473 1136942 + 102010281 AGCD01062452;XR_001231423;XR_264189 MODEL 8778180 protein-coding Rdh13 retinol dehydrogenase 13 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NADP+) activity (ortholog); INVOLVED IN eye photoreceptor cell development (ortholog); response to high light intensity (ortholog); retina layer formation (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Experimental Liver Cirrhosis (ortholog); Necrosis (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955567 1091636 1108648 + 102007379 AGCD01074459;AGCD01074460;GBBH01076835;XM_005413365;XM_005413366 XP_005413422;XP_005413423 MODEL 8920298 ncrna LOC102008005 uncharacterized LOC102008005 NW_004955494 6144787 6169872 + 102008005 AGCD01061530;GBDF01223353;XR_001231296;XR_264116 MODEL 39133243 snrna U4 U4 spliceosomal RNA 8821472 protein-coding Rhoh ras homolog family member H ENCODES a protein that exhibits GTP binding (ortholog); kinase inhibitor activity (ortholog); INVOLVED IN mast cell activation (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of T cell differentiation (ortholog); ASSOCIATED WITH coronin-1A deficiency (ortholog); Hyperglycinemia, Lactic Acidosis, and Seizures (ortholog); immunodeficiency 129 (ortholog); FOUND IN cytoplasm (ortholog); immunological synapse (ortholog); plasma membrane (ortholog) NW_004955443 7227751 7269984 - 102019443 AGCD01038274;AGCD01038275;GBBH01183545;XM_005391959;XM_005391960;XM_005391961;XM_005391962;XM_013518115;XM_013518116 XP_005392016;XP_005392017;XP_005392018;XP_005392019;XP_013373569;XP_013373570 MODEL 9055736 pseudo LOC102015603 prefoldin subunit 6 pseudogene NW_004955407 23888656 23889043 + 102015603 AGCD01007440 MODEL 8972996 protein-coding Bsn bassoon presynaptic cytomatrix protein ENCODES a protein that exhibits dynein light chain binding (ortholog); enzyme inhibitor activity (ortholog); structural constituent of presynaptic active zone (ortholog); INVOLVED IN axo-dendritic transport (ortholog); modulation of chemical synaptic transmission (ortholog); presynaptic active zone assembly (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN axon (ortholog); axon cytoplasm (ortholog); cell cortex (ortholog) NW_004955532 1527336 1578394 + 102008256 AGCD01070191;AGCD01070192;AGCD01070193;AGCD01070194;GBDF01249114;XM_013507574 XP_013363028 MODEL 10375248 pseudo LOC106149856 membrane-associated progesterone receptor component 2-like NW_004955455 3871361 3872013 - 106149856 AGCD01045661 MODEL 8877296 protein-coding Pla2g4a phospholipase A2 group IVA ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipase A2 activity (ortholog); calcium-dependent phospholipid binding (ortholog); INVOLVED IN arachidonate metabolic process (ortholog); arachidonate secretion (ortholog); cellular response to antibiotic (ortholog); PARTICIPATES IN cyclooxygenase mediated pathway of arachidonic acid metabolism; endothelin signaling pathway; Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); amyotrophic lateral sclerosis (ortholog); asthma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955406 25257361 25392079 + 102014413 AGCD01006223;AGCD01006224;AGCD01006225;AGCD01006226;AGCD01006227;AGCD01006228;AGCD01006229;AGCD01006230;GBCE01023640;XM_005375092;XM_013521775 XP_005375149;XP_013377229 MODEL 8820626 protein-coding Ptprq protein tyrosine phosphatase receptor type Q INVOLVED IN detection of mechanical stimulus involved in sensory perception of sound (ortholog); hematopoietic progenitor cell differentiation (ortholog); inner ear morphogenesis (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal dominant centronuclear myopathy (ortholog); autosomal dominant nonsyndromic deafness 73 (ortholog); autosomal recessive nonsyndromic deafness (ortholog); FOUND IN apical plasma membrane (ortholog); stereocilium base (ortholog); stereocilium bundle (ortholog) NW_004955405 19123905 19318619 + 102021834 AGCD01005031;AGCD01005032;AGCD01005033;AGCD01005034;AGCD01005035;GBCE01116834;XM_005374365;XM_013517925 XP_005374422;XP_013373379 MODEL 8887810 protein-coding Trrap transformation/transcription domain associated protein ENCODES a protein that exhibits chromatin binding (ortholog); transcription coactivator activity (ortholog); transcription coregulator activity (ortholog); INVOLVED IN positive regulation of double-strand break repair via homologous recombination (ortholog); regulation of cell cycle (ortholog); regulation of DNA-templated transcription (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness 75 (ortholog); Developmental Delay with or without Dysmorphic Facies and Autism (ortholog); Developmental Disabilities (ortholog); FOUND IN Golgi apparatus (ortholog); NuA4 histone acetyltransferase complex (ortholog); nucleoplasm (ortholog) NW_004955460 14641891 14761641 + 102003739 AGCD01048757;AGCD01048758;AGCD01048759;AGCD01048760;GBDF01050549;XM_005397925;XM_005397926;XM_005397928;XM_005397930;XM_013521171;XM_013521172;XM_013521173;XM_013521174;XM_013521175;XM_013521176;XM_013521177 XP_005397982;XP_005397983;XP_005397985;XP_005397987;XP_013376625;XP_013376626;XP_013376627;XP_013376628;XP_013376629;XP_013376630;XP_013376631 MODEL 9017245 pseudo LOC102018657 cryptochrome-1-like NW_004955555 1524678 1525436 - 102018657 AGCD01073085 MODEL 8940649 protein-coding Trip13 thyroid hormone receptor interactor 13 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN double-strand break repair (ortholog); female meiosis I (ortholog); male meiosis I (ortholog); ASSOCIATED WITH Aneuploidy (ortholog); autosomal dominant dyskeratosis congenita 2 (ortholog); COVID-19 (ortholog); FOUND IN male germ cell nucleus (ortholog) NW_004955504 434187 452636 + 102029767 AGCD01064819;GBDF01223456;XM_005407032 XP_005407089 MODEL 8704761 protein-coding LOC102024327 cytokine receptor common subunit beta-like NW_004955413 23468980 23472461 - 102024327 AGCD01014332;GBDI01259559;XM_005379176;XR_260099 XP_005379233 MODEL 8844587 protein-coding LOC102003692 cytoplasmic FMR1-interacting protein 1 NW_004955533 1057633 1203027 + 102003692 AGCD01070337;AGCD01070338;AGCD01070339;AGCD01070340;AGCD01070341;AGCD01070342;AGCD01070343;AGCD01070344;AGCD01070345;AGCD01070346;AGCD01070347;AGCD01070348;GBBH01063748;GBDF01122441;XM_013507676 XP_013363130 MODEL 8879066 protein-coding Otx2 orthodenticle homeobox 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); axon guidance (ortholog); ASSOCIATED WITH Anophthalmia (ortholog); combined pituitary hormone deficiency (ortholog); combined pituitary hormone deficiency 6 (ortholog); FOUND IN cytoplasm (ortholog); growth cone (ortholog); nucleus (ortholog) NW_004955466 10755143 10764957 - 102023791 AGCD01051074;GBDF01183552;XM_005399198;XM_013521875;XM_013521876 XP_005399255;XP_013377329;XP_013377330 MODEL 8717809 protein-coding LOC102009512 aldehyde dehydrogenase family 3 member B2-like NW_004955422 17841051 17848453 + 102009512 AGCD01022932;GBDK01152699;XM_005384296 XP_005384353 MODEL 39133310 snorna SNORA62 Small nucleolar RNA SNORA62/SNORA6 family 8974164 protein-coding Sri sorcin ENCODES a protein that exhibits calcium ion binding (ortholog); DNA-binding transcription factor binding (ortholog); identical protein binding (ortholog); INVOLVED IN calcium ion transport (ortholog); heart development (ortholog); negative regulation of cardiac muscle contraction (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); congestive heart failure (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); chromaffin granule membrane (ortholog) NW_004955432 5541311 5559781 - 102017906 AGCD01030786;GBCQ01042054;XM_005387978;XM_005387979;XM_013516016 XP_005388035;XP_005388036;XP_013371470 MODEL 8898706 protein-coding Tpm3 tropomyosin 3 ENCODES a protein that exhibits actin filament binding (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN actin cytoskeleton (ortholog); brush border (ortholog); cleavage furrow (ortholog) NW_004955545 715860 746580 - 102027114 AGCD01071815;GBBH01031876;XM_005411467;XM_005411469;XM_005411470;XM_005411472;XM_005411473;XM_005411474;XM_005411475;XM_005411476;XM_005411478;XM_005411479;XM_005411481;XM_013508242;XM_013508243;XM_013508244;XM_013508245 XP_005411524;XP_005411526;XP_005411527;XP_005411529;XP_005411530;XP_005411531;XP_005411532;XP_005411533;XP_005411535;XP_005411536;XP_005411538;XP_013363696;XP_013363697;XP_013363698;XP_013363699 MODEL 8770540 protein-coding Prok1 prokineticin 1 INVOLVED IN cell population proliferation (ortholog); positive regulation of MAPK cascade (ortholog); positive regulation of vascular endothelial cell proliferation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); developmental and epileptic encephalopathy 32 (ortholog); FOUND IN extracellular region (ortholog) NW_004955435 13930897 13935335 + 102018967 AGCD01033212;XM_005388924 XP_005388981 MODEL 8795536 protein-coding LOC102011029 chromosome unknown open reading frame, human C10orf67 ASSOCIATED WITH maturity-onset diabetes of the young type 1 (ortholog); pancreatic agenesis 2 (ortholog); type 2 diabetes mellitus (ortholog) NW_004955429 5674076 5798289 + 102011029 AGCD01028531;AGCD01028532;AGCD01028533;AGCD01028534;AGCD01028535;AGCD01028536;GBDF01127753;XM_013515364 XP_013370818 MODEL 8746347 protein-coding Emsy EMSY transcriptional repressor, BRCA2 interacting ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH atopic dermatitis (ortholog); Breast Neoplasms (ortholog); Familial Prostate Cancer (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955414 15395851 15482490 - 102015398 AGCD01015184;AGCD01015185;AGCD01015186;GBDK01013488;XM_005379854;XM_005379859;XM_005379860;XM_005379861;XM_005379865;XM_013511858;XM_013511859;XM_013511860;XM_013511861;XM_013511862;XM_013511863;XM_013511864;XM_013511865;XM_013511866;XM_013511867;XM_013511868;XM_013511869;XM_013511870;XM_013511871;XR_001233129;XR_001233130 XP_005379911;XP_005379916;XP_005379917;XP_005379918;XP_005379922;XP_013367312;XP_013367313;XP_013367314;XP_013367315;XP_013367316;XP_013367317;XP_013367318;XP_013367319;XP_013367320;XP_013367321;XP_013367322;XP_013367323;XP_013367324;XP_013367325 MODEL 8957846 protein-coding LOC102006524 PRAME family member 9/15-like NW_004955608 205572 208767 - 102006524 AGCD01077013;AGCD01077014;GBDF01281184;XM_013510116 XP_013365570 MODEL 8756232 protein-coding LOC102012655 PRAME family member 9/15-like NW_004955486 31204 93920 - 102012655 AGCD01058788;AGCD01058789;AGCD01058790;AGCD01058791;AGCD01058792;AGCD01058793;AGCD01058794;AGCD01058795;AGCD01058796;AGCD01058797;AGCD01058798;AGCD01058799;AGCD01058800;GBBH01072713;XM_013504133 XP_013359587 MODEL 8938727 protein-coding LOC102008010 melanoma-associated antigen 10-like NW_004955498 7052955 7064840 - 102008010 AGCD01063141;AGCD01063142;GBDF01251926;XM_013505532;XM_013505533;XM_013505534;XM_013505535 XP_013360986;XP_013360987;XP_013360988;XP_013360989 MODEL 8707196 pseudo LOC102008404 RNA-binding protein with serine-rich domain 1 pseudogene NW_004955415 22507523 22528364 - 102008404 AGCD01016538;AGCD01016539 MODEL 8959420 pseudo LOC102017524 40S ribosomal protein S2 pseudogene NW_004955451 137996 138829 + 102017524 AGCD01042920 MODEL 8770290 protein-coding Pop1 POP1 homolog, ribonuclease P/MRP subunit ENCODES a protein that exhibits ribonuclease P activity (ortholog); ribonuclease P RNA binding (ortholog); INVOLVED IN tRNA 5'-leader removal (ortholog); tRNA decay (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH anauxetic dysplasia 1 (ortholog); anauxetic dysplasia 2 (ortholog); Cohen syndrome (ortholog); FOUND IN multimeric ribonuclease P complex (ortholog); nucleolar ribonuclease P complex (ortholog); nucleolus (ortholog) NW_004955417 13823027 13856448 + 102010157 AGCD01018191;GBCE01138351;XM_005381847 XP_005381904 MODEL 9047238 protein-coding Pdcl phosducin like ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN heterotrimeric G-protein complex assembly (ortholog); negative regulation of protein refolding (ortholog); positive regulation of smoothened signaling pathway (ortholog); FOUND IN cytoplasm (ortholog) NW_004955419 5123490 5132092 + 102004281 AGCD01019783;GBDF01280771;XM_013513301 XP_013368755 MODEL 8894977 protein-coding LOC102021582 secreted and transmembrane protein 1A-like NW_004955506 832244 843629 - 102021582 AGCD01065237;GBBH01073613;XM_005407502 XP_005407559 MODEL 8846363 protein-coding Timeless timeless circadian regulator ENCODES a protein that exhibits enzyme activator activity (ortholog); identical protein binding (ortholog); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); branching morphogenesis of an epithelial tube (ortholog); cell cycle phase transition (ortholog); ASSOCIATED WITH advanced sleep phase syndrome 4 (ortholog); alcohol use disorder (ortholog); cataract 15 multiple types (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955458 3999143 4029523 - 102009354 AGCD01047360;AGCD01047361;AGCD01047362;GBDF01162534;XM_005397313;XM_013521023 XP_005397370;XP_013376477 MODEL 8980145 protein-coding Lhx3 LIM homeobox 3 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN apoptotic process (ortholog); dorsal/ventral pattern formation (ortholog); inner ear development (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); amenorrhea (ortholog); atrial fibrillation (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955513 4464149 4470962 + 102016736 AGCD01066927;AGCD01066928;XM_005408529 XP_005408586 MODEL 8831381 ncrna LOC102011851 uncharacterized LOC102011851 NW_004955412 12945686 12959032 - 102011851 AGCD01012826;GBDF01076106;XR_259986 MODEL 9020243 protein-coding Rspry1 ring finger and SPRY domain containing 1 ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); developmental and epileptic encephalopathy (ortholog) NW_004955433 14843521 14884083 + 102022845 AGCD01031730;GBDF01121224;XM_005388375;XM_005388377 XP_005388432;XP_005388434 MODEL 8870031 protein-coding Serpinb11 serpin family B member 11 ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); multiple congenital anomalies-hypotonia-seizures syndrome 1 (ortholog) NW_004955402 47564631 47585486 + 102025638 AGCD01001191;GBBH01001457;XM_005373034 XP_005373091 MODEL 8902302 protein-coding LOC102009513 40S ribosomal protein S27-like NW_004955422 18850193 18850985 - 102009513 AGCD01022964;GBCQ01146185;XM_005384396 XP_005384453 MODEL 8803913 protein-coding Parp11 poly(ADP-ribose) polymerase family member 11 ENCODES a protein that exhibits NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN nuclear envelope organization (ortholog); protein auto-ADP-ribosylation (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); nuclear envelope (ortholog) NW_004955413 1549572 1682395 - 102027503 AGCD01013522;AGCD01013523;AGCD01013524;AGCD01013525;AGCD01013526;AGCD01013527;GBDI01319482;XM_005378723;XM_013511662;XM_013511664;XM_013511665;XR_001233047 XP_005378780;XP_013367116;XP_013367118;XP_013367119 MODEL 8897338 protein-coding Wdr25 WD repeat domain 25 ASSOCIATED WITH Kagami-Ogata syndrome (ortholog); long QT syndrome (ortholog) NW_004955438 21445502 21570271 + 102018335 AGCD01035544;AGCD01035545;AGCD01035546;AGCD01035547;GBBH01071352;GBDF01122161;XM_005390456 XP_005390513 MODEL 8796043 protein-coding Pex26 peroxisomal biogenesis factor 26 ENCODES a protein that exhibits ATPase binding (ortholog); protein-containing complex binding (ortholog); protein-membrane adaptor activity (ortholog); INVOLVED IN protein import into peroxisome matrix (ortholog); protein to membrane docking (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); DiGeorge syndrome (ortholog); fundus dystrophy (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955454 6097251 6115430 + 102006311 AGCD01045214;AGCD01045215;AGCD01045216;AGCD01045217;AGCD01045218;GBCE01096655;XM_005395985 XP_005396042 MODEL 8809921 protein-coding Smarca1 SNF2 related chromatin remodeling ATPase 1 ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); ATP-dependent chromatin remodeler activity (ortholog); ATP-dependent DNA/DNA annealing activity (ortholog); INVOLVED IN brain development (ortholog); chromatin remodeling (ortholog); neuron differentiation (ortholog); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN ATPase complex (ortholog); CERF complex (ortholog); chromatin (ortholog) NW_004955473 5498738 5572863 + 102014772 AGCD01053978;AGCD01053979;GBDK01226981;XM_005401264;XM_005401265;XM_005401267;XM_005401268;XM_005401270 XP_005401321;XP_005401322;XP_005401324;XP_005401325;XP_005401327 MODEL 8861500 protein-coding Rdh14 retinol dehydrogenase 14 ENCODES a protein that exhibits alcohol dehydrogenase (NADP+) activity (ortholog); all-trans-retinol dehydrogenase (NADP+) activity (ortholog); steroid dehydrogenase activity (ortholog); INVOLVED IN retinol metabolic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); nucleoplasm (ortholog) NW_004955469 1281391 1287334 - 102009593 AGCD01052251;GBCQ01066491;XM_005400336 XP_005400393 MODEL 8756732 protein-coding LOC102005453 olfactory receptor 8D1-like NW_004955412 25120340 25121215 - 102005453 AGCD01013135;XM_013511250 XP_013366704 MODEL 8803685 protein-coding Srl sarcalumenin INVOLVED IN response to muscle activity involved in regulation of muscle adaptation (ortholog); store-operated calcium entry (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); intellectual disability (ortholog) NW_004955442 13200237 13242816 + 102016642 AGCD01037765;AGCD01037766;GBCB01003803;XM_005391314;XM_005391315 XP_005391371;XP_005391372 MODEL 8843816 protein-coding LOC102011853 uncharacterized LOC102011853 NW_004955466 8078031 8135745 + 102011853 AGCD01050979;GBDJ01302620;XM_005399163;XM_005399164;XM_013521878 XP_005399220;XP_005399221;XP_013377332 MODEL 8717866 ncrna LOC102012658 uncharacterized LOC102012658 NW_004955421 25068843 25105800 + 102012658 AGCD01022227;AGCD01022228;GBCQ01032486;XR_260828 MODEL 8808006 protein-coding LOC102006881 uncharacterized protein C2orf78-like NW_004955409 19070835 19072914 - 102006881 AGCD01009855;AGCD01009856;GBDF01127547;GBDF01127548;XM_005377161 XP_005377218 MODEL 8731550 protein-coding LOC102015607 olfactory receptor 6C65 NW_004955458 2796704 2797642 + 102015607 AGCD01047244;XM_005397245 XP_005397302 MODEL 9057470 protein-coding Ncln nicalin ENCODES a protein that exhibits ribosome binding (ortholog); INVOLVED IN multi-pass transmembrane protein insertion into ER membrane (ortholog); protein stabilization (ortholog); regulation of protein complex stability (ortholog); ASSOCIATED WITH Hirschsprung's disease (ortholog); Neurodevelopmental Disorders (ortholog); RASopathy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); multi-pass translocon complex (ortholog); protein-containing complex (ortholog) NW_004955495 5222990 5238644 - 102024126 AGCD01061985;AGCD01061986;GBCB01024263;XM_005405846;XM_005405847 XP_005405903;XP_005405904 MODEL 8897228 protein-coding Pla2g4b phospholipase A2 group IVB ENCODES a protein that exhibits calcium-dependent phospholipase A2 activity (ortholog); lysophospholipase activity (ortholog); phospholipase A1 activity (ortholog); INVOLVED IN glycerophospholipid catabolic process (ortholog); phosphatidylcholine acyl-chain remodeling (ortholog); phosphatidylethanolamine acyl-chain remodeling (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; alpha-linolenic acid metabolic pathway; antipyrine drug pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); early endosome membrane (ortholog); mitochondrial inner membrane (ortholog) NW_004955416 8633249 8643219 + 102014353 AGCD01017064;GBDI01327602;XM_013512524 XP_013367978 MODEL 8854175 protein-coding Ptprr protein tyrosine phosphatase receptor type R ENCODES a protein that exhibits protein kinase binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN ERBB2 signaling pathway (ortholog); in utero embryonic development (ortholog); negative regulation of epithelial cell migration (ortholog); FOUND IN cell junction (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955405 10767548 11133695 - 102029696 AGCD01004822;AGCD01004823;AGCD01004824;AGCD01004825;AGCD01004826;AGCD01004827;GBDJ01213984;XM_005374316;XM_005374317 XP_005374373;XP_005374374 MODEL 8743211 protein-coding Psmb2 proteasome 20S subunit beta 2 ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); COVID-19 (ortholog); urinary bladder cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955452 13688218 13725318 - 102021514 AGCD01044431;GBBH01033049;XM_005395153 XP_005395210 MODEL 8748194 ncrna LOC102008409 uncharacterized LOC102008409 NW_004955477 11222230 11223234 + 102008409 AGCD01055725;GBBH01224847;XR_263677 MODEL 10068087 ncrna LOC106147024 uncharacterized LOC106147024 NW_004955512 3700766 3783966 - 106147024 AGCD01066706;AGCD01066707;AGCD01066708;AGCD01066709;GBDI01142976;XR_001231721 MODEL 8790738 ncrna LOC102019045 uncharacterized LOC102019045 NW_004955466 9453241 9501042 - 102019045 AGCD01051041;AGCD01051042;GBCQ01154689;XR_001236769 MODEL 8820002 protein-coding Slc45a2 solute carrier family 45 member 2 ENCODES a protein that exhibits D-glucose:proton symporter activity (ortholog); sucrose:proton symporter activity (ortholog); INVOLVED IN developmental pigmentation (ortholog); lysosomal lumen pH elevation (ortholog); melanin biosynthetic process from tyrosine (ortholog); ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); arthrogryposis multiplex congenita-4 (ortholog); basal cell carcinoma (ortholog); FOUND IN melanosome membrane (ortholog) NW_004955426 19498942 19530628 - 102027881 AGCD01026547;GBDF01043012;XM_005386166;XM_005386167;XM_013514938;XM_013514939 XP_005386223;XP_005386224;XP_013370392;XP_013370393 MODEL 8926213 protein-coding Lhx4 LIM homeobox 4 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); methyl-CpG binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); apoptotic process (ortholog); medial motor column neuron differentiation (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); combined or isolated pituitary hormone deficiency 1 (ortholog) NW_004955406 19457658 19470875 + 102010972 AGCD01006082;GBDF01262146;XM_013503151 XP_013358605 MODEL 151707876 snorna SNORD23 small nucleolar RNA, C/D box 23 9022800 protein-coding LOC102011031 odorant-binding protein 2b-like NW_004955513 2641785 2645058 + 102011031 AGCD01066883;GBBH01003721;XM_005408423;XM_013506570 XP_005408480;XP_013362024 MODEL 8963970 protein-coding LOC102006527 DNA dC->dU-editing enzyme APOBEC-3C-like NW_004957268 331 1246 + 102006527 AGCD01080664;GBCC01040991;GBDJ01005875;XM_005415226 XP_005415283 MODEL 8904491 pseudo LOC102005454 lupus La protein homolog pseudogene NW_004955412 30675648 30678489 + 102005454 AGCD01013305 MODEL 8822158 protein-coding Bsnd barttin CLCNK type accessory subunit beta ENCODES a protein that exhibits chloride channel activity (ortholog); chloride channel regulator activity (ortholog); INVOLVED IN chloride transport (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); Bartter disease (ortholog); Bartter disease type 4A (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955464 4459686 4468749 - 102023448 AGCD01049991;GBCQ01002696;XM_013521764 XP_013377218 MODEL 8772337 protein-coding Snx27 sorting nexin 27 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); ionotropic glutamate receptor binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN cellular response to nerve growth factor stimulus (ortholog); endocytic recycling (ortholog); endosomal transport (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH Disease Progression (ortholog); Dravet syndrome (ortholog); early myoclonic encephalopathy (ortholog); FOUND IN early endosome (ortholog); endosome (ortholog); glutamatergic synapse (ortholog) NW_004955589 719892 799367 - 102019344 AGCD01076181;AGCD01076182;AGCD01076183;GBCQ01062668;XM_005414566;XM_005414567;XM_005414568 XP_005414623;XP_005414624;XP_005414625 MODEL 9000276 protein-coding LOC102017526 uncharacterized LOC102017526 NW_004955844 877 5035 + 102017526 AGCD01078475;AGCD01078476;GBDK01121913;XM_005415129 XP_005415186 MODEL 8815252 ncrna LOC102018669 uncharacterized LOC102018669 NW_004955450 1821752 1837551 + 102018669 AGCD01042371;GBDF01222200;XR_001235919;XR_262519 MODEL 8841385 ncrna LOC102008011 uncharacterized LOC102008011 NW_004955426 3353899 3375511 + 102008011 AGCD01026078;GBDI01255537;XR_261184;XR_261185 MODEL 8720110 protein-coding Rdh5 retinol dehydrogenase 5 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); androstan-3-alpha,17-beta-diol dehydrogenase (NAD+) activity (ortholog); androsterone dehydrogenase [NAD(P)+] activity (ortholog); INVOLVED IN retinoid metabolic process (ortholog); steroid metabolic process (ortholog); PARTICIPATES IN retinoid cycle metabolic pathway; ASSOCIATED WITH Congenital Abnormalities (ortholog); congenital stationary night blindness (ortholog); fundus albipunctatus (ortholog); FOUND IN cell body (ortholog); endoplasmic reticulum lumen (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955458 3356324 3361701 + 102020090 AGCD01047296;GBDI01078451;XM_005397255;XM_005397256;XM_005397257 XP_005397312;XP_005397313;XP_005397314 MODEL 8761807 protein-coding Trub1 TruB pseudouridine synthase family member 1 ENCODES a protein that exhibits pre-miRNA binding (ortholog); pseudouridine synthase activity (ortholog); INVOLVED IN mRNA pseudouridine synthesis (ortholog); positive regulation of pre-miRNA processing (ortholog); tRNA modification (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955431 19840827 19877930 + 102020477 AGCD01030455;AGCD01030456;GBDF01225347;XM_005387841 XP_005387898 MODEL 8755395 protein-coding Pdcl2 phosducin like 2 INVOLVED IN acrosome assembly (ortholog); flagellated sperm motility (ortholog); sperm axoneme assembly (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIk (ortholog); gastrointestinal stromal tumor (ortholog); male infertility (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955447 15364116 15386071 + 102004339 AGCD01041052;GBDF01008116;XM_005392883;XM_005392884;XM_005392885 XP_005392940;XP_005392941;XP_005392942 MODEL 8830697 protein-coding Bsph1 binder of sperm protein homolog 1 ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN sperm capacitation (ortholog); FOUND IN cell surface (ortholog) NW_004955609 261937 266866 + 102013675 AGCD01077055;XM_005414937 XP_005414994 MODEL 39133244 snrna U4 U4 spliceosomal RNA 8842862 protein-coding Ncmap non-compact myelin associated protein ENCODES a protein that exhibits structural constituent of myelin sheath (ortholog); INVOLVED IN peripheral nervous system myelin formation (ortholog); positive regulation of myelination (ortholog); FOUND IN paranode region of axon (ortholog); plasma membrane (ortholog); Schmidt-Lanterman incisure (ortholog) NW_004955452 4335411 4380972 + 102030032 AGCD01043973;AGCD01043974;AGCD01043975;AGCD01043976;AGCD01043977;AGCD01043978;AGCD01043979;AGCD01043980;GBDJ01061735;XM_005394808;XM_005394809;XM_005394810;XM_005394811;XR_262648 XP_005394865;XP_005394866;XP_005394867;XP_005394868 MODEL 9065187 protein-coding Timm10 translocase of inner mitochondrial membrane 10 ENCODES a protein that exhibits membrane insertase activity (ortholog); protein homodimerization activity (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; ASSOCIATED WITH Animal Disease Models (ortholog); intellectual disability (ortholog); lung adenocarcinoma (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial intermembrane space protein transporter complex (ortholog) NW_004955511 2498498 2500828 - 102017900 AGCD01066409;GBCE01052696;XM_005407996 XP_005408053 MODEL 8721098 protein-coding Pla2g4c phospholipase A2 group IVC ENCODES a protein that exhibits calcium-independent phospholipase A2 activity (ortholog); lysophospholipase activity (ortholog); O-acyltransferase activity (ortholog); INVOLVED IN glycerophospholipid catabolic process (ortholog); lipid droplet formation (ortholog); phosphatidylcholine acyl-chain remodeling (ortholog); FOUND IN cell cortex (ortholog); endoplasmic reticulum membrane (ortholog); lipid droplet (ortholog) NW_004955609 182706 212102 + 102010967 AGCD01077053;AGCD01077054;GBDJ01028499;XM_013510120 XP_013365574 MODEL 8741495 protein-coding Rhoj ras homolog family member J ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); positive regulation of cell migration involved in sprouting angiogenesis (ortholog); regulation of cell shape (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); Colonic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955466 6476822 6564890 - 102010140 AGCD01050928;GBBH01186921;XM_005399158 XP_005399215 MODEL 8912923 protein-coding Psmb3 proteasome 20S subunit beta 3 FOUND IN cytoplasm (ortholog); nucleus (ortholog); proteasome complex (ortholog) NW_004955451 13835173 13841626 + 102019348 AGCD01043507;AGCD01043508;GBBH01001656;XM_005394282 XP_005394339 MODEL 8883865 pseudo LOC102011451 uncharacterized LOC102011451 NW_004955421 28537400 28548971 - 102011451 AGCD01022331 MODEL 8838936 ncrna LOC102009517 uncharacterized LOC102009517 NW_004955423 4665440 4705460 + 102009517 AGCD01023541;AGCD01023542;AGCD01023543;GBDF01110689;XR_260953 MODEL 10138054 ncrna LOC106149857 uncharacterized LOC106149857 NW_004955455 9670796 9672168 - 106149857 AGCD01045926;GBDF01208715;XR_001236303 MODEL 8704748 protein-coding Serpinb12 serpin family B member 12 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); multiple congenital anomalies-hypotonia-seizures syndrome 1 (ortholog); FOUND IN cornified envelope (ortholog) NW_004955402 47338874 47361485 + 102024072 AGCD01001180;GBDI01178459;XM_005373030 XP_005373087 MODEL 8816567 pseudo LOC102010616 60S ribosomal protein L28 pseudogene NW_004955516 3854520 3859651 - 102010616 AGCD01067515 MODEL 9015212 protein-coding Plxnb3 plexin B3 ENCODES a protein that exhibits cell-cell adhesion mediator activity (ortholog); protein domain specific binding (ortholog); Rho GDP-dissociation inhibitor binding (ortholog); INVOLVED IN cell chemotaxis (ortholog); homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); negative regulation of cell adhesion (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cell surface (ortholog) NW_004955580 482602 495628 + 102016653 AGCD01075607;GBBH01163823;XM_005414143;XM_013509679;XM_013509680;XM_013509681;XM_013509682;XM_013509683;XM_013509684;XM_013509685;XM_013509686;XM_013509687;XR_001232477 XP_005414200;XP_013365133;XP_013365134;XP_013365135;XP_013365136;XP_013365137;XP_013365138;XP_013365139;XP_013365140;XP_013365141 MODEL 8927755 protein-coding Rsrc1 arginine and serine rich coiled-coil 1 INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); mRNA splicing, via spliceosome (ortholog); nucleocytoplasmic transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive intellectual developmental disorder 70 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955448 8947553 9249465 + 102025411 AGCD01041456;AGCD01041457;AGCD01041458;AGCD01041459;AGCD01041460;AGCD01041461;AGCD01041462;AGCD01041463;AGCD01041464;AGCD01041465;AGCD01041466;AGCD01041467;XM_013518587 XP_013374041 MODEL 8928867 pseudo LOC102023295 B-cell CLL/lymphoma 7 protein family member C pseudogene NW_004955543 563482 564377 + 102023295 AGCD01071591 MODEL 8760565 ncrna LOC102012659 uncharacterized LOC102012659 NW_004955422 126981 128331 + 102012659 AGCD01022394;GBDF01161749;XR_260841 MODEL 8740002 pseudo LOC102010284 general transcription factor 3C polypeptide 6 pseudogene NW_004955500 4949060 4951908 + 102010284 AGCD01063817 MODEL 8749578 pseudo LOC102006883 regulator of nonsense transcripts 2 pseudogene NW_004955463 5813626 5816741 + 102006883 AGCD01049644 MODEL 8870257 protein-coding Slc25a42 solute carrier family 25 member 42 ENCODES a protein that exhibits ADP phosphatase activity (ortholog); ADP transmembrane transporter activity (ortholog); AMP transmembrane transporter activity (ortholog); INVOLVED IN ADP transport (ortholog); AMP transport (ortholog); ATP transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); mitochondrial myopathy (ortholog); FOUND IN mitochondrion (ortholog) NW_004955524 2674508 2683304 - 102007050 AGCD01068828;GBCB01022455;XM_005409612;XM_005409613;XM_013507218;XM_013507219 XP_005409669;XP_005409670;XP_013362672;XP_013362673 MODEL 39133309 snorna SNORA62 Small nucleolar RNA SNORA62/SNORA6 family 9001900 protein-coding LOC102021585 olfactory receptor 5AL1-like NW_004955511 1558626 1559570 + 102021585 AGCD01066371;XM_005408236 XP_005408293 MODEL 8860192 protein-coding Ovca2 OVCA2 serine hydrolase domain containing INVOLVED IN response to retinoic acid (ortholog); ASSOCIATED WITH ovarian cancer (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955481 1192930 1195142 - 102012759 AGCD01056828;XM_005402599 XP_005402656 MODEL 10256809 ncrna LOC106147025 uncharacterized LOC106147025 NW_004955512 2736398 2750929 - 106147025 AGCD01066684;XR_001231722 MODEL 8771992 protein-coding Tpm4 tropomyosin 4 ENCODES a protein that exhibits actin filament binding (ortholog); identical protein binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN platelet formation (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); asbestosis (ortholog); Esophageal Neoplasms (ortholog); FOUND IN actin cytoskeleton (ortholog); cortical cytoskeleton (ortholog); cytoplasm (ortholog) NW_004955524 1419061 1432114 - 102022847 AGCD01068749;GBCC01000148;GBCQ01010124;XM_013507272 XP_013362726 MODEL 8754591 protein-coding Rdh8 retinol dehydrogenase 8 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); INVOLVED IN retinol metabolic process (ortholog); visual perception (ortholog); PARTICIPATES IN retinoid cycle metabolic pathway; retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH autistic disorder (ortholog) NW_004955495 1388385 1393209 + 102027317 AGCD01061685;GBDJ01396679;XM_005405579 XP_005405636 MODEL 8759321 protein-coding Rab39b RAB39B, member RAS oncogene family ENCODES a protein that exhibits myosin V binding (ortholog); INVOLVED IN regulation of autophagy (ortholog); synapse organization (ortholog); vesicle-mediated transport (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN Golgi apparatus (ortholog); neuron projection (ortholog); vesicle (ortholog) NW_004955594 424642 431009 + 102023416 AGCD01076427;GBBH01210155;XM_005414644 XP_005414701 MODEL 8858332 protein-coding Ptprs protein tyrosine phosphatase receptor type S ENCODES a protein that exhibits chondroitin sulfate binding (ortholog); heparin binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN cerebellum development (ortholog); cerebral cortex development (ortholog); corpus callosum development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Hearing Loss (ortholog); NATURAL KILLER CELL ENTEROPATHY (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955495 3943075 3991361 + 102029307 AGCD01061889;AGCD01061890;AGCD01061891;AGCD01061892;AGCD01061893;GBCB01088757;GBDF01128475;XM_013505293 XP_013360747 MODEL 8881740 protein-coding Prok2 prokineticin 2 ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); INVOLVED IN angiogenesis (ortholog); chemotaxis (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH amenorrhea (ortholog); disorder of sexual development (ortholog); genetic disease (ortholog) NW_004955421 16325519 16339458 + 102030322 AGCD01021998;GBDK01269636;XM_005383770;XM_005383771 XP_005383827;XP_005383828 MODEL 8900987 protein-coding Emx1 empty spiracles homeobox 1 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN brain development (ortholog); brain morphogenesis (ortholog); cerebral cortex development (ortholog); ASSOCIATED WITH Alstrom syndrome (ortholog); congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955424 12666280 12683023 - 102021025 AGCD01024617;GBCQ01035827;XM_005385579 XP_005385636 MODEL 9000933 protein-coding Pdcl3 phosducin like 3 ENCODES a protein that exhibits protein folding chaperone (ortholog); vascular endothelial growth factor receptor 2 binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); angiogenesis (ortholog); cellular response to heat (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955470 6553450 6563814 + 102016045 AGCD01052773;GBDF01302066;XM_005400758 XP_005400815 MODEL 8784359 protein-coding Smarca2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 ENCODES a protein that exhibits chromatin binding (ortholog); transcription cis-regulatory region binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN aortic smooth muscle cell differentiation (ortholog); cell population proliferation (ortholog); fibroblast proliferation (ortholog); PARTICIPATES IN histone modification pathway; SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Arnold-Chiari Malformation (ortholog); autism spectrum disorder (ortholog); FOUND IN chromatin (ortholog); intermediate filament cytoskeleton (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955434 6420850 6592797 + 102015233 AGCD01032211;AGCD01032212;AGCD01032213;GBDF01089445;XM_005388600;XM_005388601;XM_005388602;XM_005388603;XM_005388604;XM_005388605;XM_005388606;XM_005388607;XM_013516311 XP_005388657;XP_005388658;XP_005388659;XP_005388660;XP_005388661;XP_005388662;XP_005388663;XP_005388664;XP_013371765 MODEL 8921319 protein-coding LOC102011861 vomeronasal type-1 receptor 90-like NW_004955414 14978145 14979125 - 102011861 AGCD01015166;XM_005380440 XP_005380497 MODEL 39132080 snorna SNORD24 Small nucleolar RNA SNORD24 8755682 protein-coding LOC102015610 dehydrogenase/reductase SDR family member 2, mitochondrial-like NW_004955409 36455963 36470704 - 102015610 AGCD01010462;AGCD01010463;GBDJ01240364;XM_013510424 XP_013365878 MODEL 8715778 ncrna LOC102024328 uncharacterized LOC102024328 NW_004955471 6006346 6008801 - 102024328 AGCD01053116;GBDF01188582;XR_001237053 MODEL 8943699 protein-coding Rhoq ras homolog family member Q ENCODES a protein that exhibits GBD domain binding (ortholog); GTPase activity (ortholog); profilin binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); cortical actin cytoskeleton organization (ortholog); GTP metabolic process (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin signaling pathway; Rho/Rac/Cdc42 mediated signaling pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Lynch syndrome (ortholog); FOUND IN actin filament (ortholog); membrane raft (ortholog); plasma membrane (ortholog) NW_004955441 13457757 13495221 + 102013343 AGCD01037151;GBBH01164132;GBDK01318868;XM_005390979;XM_013517588 XP_005391036;XP_013373042 MODEL 8821393 protein-coding Trip4 thyroid hormone receptor interactor 4 ENCODES a protein that exhibits histone acetyltransferase binding (ortholog); nuclear estrogen receptor binding (ortholog); nuclear receptor binding (ortholog); INVOLVED IN estrogen receptor signaling pathway (ortholog); positive regulation of DNA-templated transcription (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); centronuclear myopathy (ortholog); colorectal cancer (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); neuromuscular junction (ortholog) NW_004955450 11005842 11088192 - 102017084 AGCD01042643;AGCD01042644;AGCD01042645;AGCD01042646;AGCD01042647;GBDJ01063421;XM_005393753 XP_005393810 MODEL 8954275 ncrna LOC102005457 uncharacterized LOC102005457 NW_004955413 21113074 21147758 + 102005457 AGCD01014246;AGCD01014247;GBBH01122379;XR_001232964;XR_001232965;XR_001232966 MODEL 8884494 protein-coding LOC102006528 L-gulonolactone oxidase NW_004955403 50132066 50154216 + 102006528 AGCD01002959;GBCE01014649;XM_005373748;XM_005373749;XM_013514239;XM_013514245 XP_005373805;XP_005373806;XP_013369693;XP_013369699 MODEL 8884017 pseudo LOC102017527 histone-binding protein RBBP4 pseudogene NW_004955403 47556881 47558928 - 102017527 AGCD01002891 MODEL 8820249 ncrna LOC102006884 uncharacterized LOC102006884 NW_004955464 10682579 10683956 - 102006884 AGCD01050127;GBCE01067008;XR_001236703;XR_001236704 MODEL 8908363 protein-coding Pex3 peroxisomal biogenesis factor 3 ENCODES a protein that exhibits lipid binding (ortholog); INVOLVED IN peroxisome membrane biogenesis (ortholog); peroxisome organization (ortholog); protein import into peroxisome membrane (ortholog); ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 4 (ortholog); genetic disease (ortholog); infantile Refsum disease (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); nucleoplasm (ortholog) NW_004955436 16918259 16956242 - 102009213 AGCD01033936;AGCD01033937;AGCD01033938;GBDJ01025650;XM_005389251;XM_013516645 XP_005389308;XP_013372099 MODEL 8984930 protein-coding LOC102021588 mitochondrial amidoxime-reducing component 1 NW_004955520 2979516 3001945 - 102021588 AGCD01068087;GBCB01018209;XM_005409265 XP_005409322 MODEL 39131528 protein-coding LHX4 LIM homeobox 4 8707537 protein-coding Bspry B-box and SPRY domain containing INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); FOUND IN cell leading edge (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955419 14124167 14139181 - 102027074 AGCD01020012;GBCE01170004;GBDI01012219;XM_013513135 XP_013368589 MODEL 8764356 protein-coding Rasef RAS and EF-hand domain containing ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); identical protein binding (ortholog); FOUND IN cytosol (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955530 690748 747415 + 102012359 AGCD01069863;AGCD01069864;GBBH01098179;XM_013507551;XM_013507552;XM_013507553;XM_013507554;XM_013507555;XM_013507556 XP_013363005;XP_013363006;XP_013363007;XP_013363008;XP_013363009;XP_013363010 MODEL 9007798 pseudo LOC102011459 ATP synthase F(0) complex subunit B1, mitochondrial pseudogene NW_004955424 20453388 20454636 + 102011459 AGCD01024856 MODEL 8798793 protein-coding Srm spermidine synthase ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); spermidine synthase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); response to testosterone (ortholog); spermidine biosynthetic process (ortholog); PARTICIPATES IN glycine N-methyltransferase deficiency pathway; homocystinuria pathway; hypermethioninemia pathway; ASSOCIATED WITH Animal Disease Models (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog) NW_004955486 2631579 2634779 + 102020015 AGCD01059001;GBDF01048561;GBDJ01081417;XM_005404304 XP_005404361 MODEL 8734543 protein-coding Psmb4 proteasome 20S subunit beta 4 ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); INVOLVED IN negative regulation of inflammatory response to antigenic stimulus (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Dravet syndrome (ortholog); gastrointestinal stromal tumor (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN ciliary basal body (ortholog); cytoplasm (ortholog); mitochondrion (ortholog) NW_004955589 976216 978566 - 102022554 AGCD01076185;GBDF01001317;XM_005414579 XP_005414636 MODEL 8719840 protein-coding LOC102009525 sperm motility kinase 2B-like NW_004955429 13400335 13403083 + 102009525 AGCD01028747;GBDK01097126;XM_005386993 XP_005387050 MODEL 9024922 protein-coding Pop4 POP4 homolog, ribonuclease P/MRP subunit ENCODES a protein that exhibits ribonuclease P activity (ortholog); ribonuclease P RNA binding (ortholog); INVOLVED IN tRNA 5'-leader removal (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN multimeric ribonuclease P complex (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955468 7983394 7994863 - 102012524 AGCD01052018;GBDI01104355;XM_005400112;XM_005400113;XM_005400114;XM_005400115 XP_005400169;XP_005400170;XP_005400171;XP_005400172 MODEL 8833943 pseudo LOC102015611 BUB3-interacting and GLEBS motif-containing protein ZNF207-like NW_004955409 31897502 31900908 + 102015611 AGCD01010342 MODEL 9067063 ncrna LOC102018672 uncharacterized LOC102018672 NW_004955450 16469003 16471165 - 102018672 AGCD01042844;GBDF01179379;XR_001235843 MODEL 8920890 ncrna LOC102012660 uncharacterized LOC102012660 NW_004955422 11202376 11214424 - 102012660 AGCD01022751;GBDF01159067;XR_260856;XR_260857 MODEL 8861038 protein-coding LOC102019047 Golgi apparatus membrane protein TVP23 homolog B NW_004955467 2126184 2148053 + 102019047 AGCD01051302;GBBH01035105;XM_005399326 XP_005399383 MODEL 8768717 protein-coding Trub2 TruB pseudouridine synthase family member 2 ENCODES a protein that exhibits pseudouridine synthase activity (ortholog); INVOLVED IN mRNA pseudouridine synthesis (ortholog); positive regulation of mitochondrial translation (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); dystonia (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); ribonucleoprotein granule (ortholog) NW_004955570 826776 837116 - 102024393 AGCD01074769;GBDI01220800;XM_005413537 XP_005413594 MODEL 9056732 protein-coding Parp12 poly(ADP-ribose) polymerase family member 12 ENCODES a protein that exhibits NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN protein auto-ADP-ribosylation (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Human Influenza (ortholog); macular degeneration (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955494 3126451 3158550 + 102023488 AGCD01061467;GBDF01000030;GBDJ01190436;XM_005405428 XP_005405485 MODEL 8771794 protein-coding Slc45a3 solute carrier family 45 member 3 ENCODES a protein that exhibits sucrose:proton symporter activity (ortholog); INVOLVED IN positive regulation of fatty acid biosynthetic process (ortholog); positive regulation of glucose metabolic process (ortholog); regulation of oligodendrocyte differentiation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); familial adult myoclonic epilepsy 5 (ortholog) NW_004955406 41362077 41381981 - 102010669 AGCD01006678;AGCD01006679;GBDK01319488;XM_005375364;XM_005375368;XM_013522930;XM_013522934;XM_013522936;XM_013522940;XM_013522943 XP_005375421;XP_005375425;XP_013378384;XP_013378388;XP_013378390;XP_013378394;XP_013378397 MODEL 8991556 protein-coding Ovch2 ovochymase 2 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); INVOLVED IN fertilization (ortholog) NW_004955414 23449841 23466034 - 102011977 AGCD01015499;XM_005380204 XP_005380261 MODEL 9062605 protein-coding Rhot1 ras homolog family member T1 INVOLVED IN cellular homeostasis (ortholog); establishment of mitochondrion localization by microtubule attachment (ortholog); mitochondrial outer membrane permeabilization (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH motor neuron disease (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955481 7149836 7199296 + 102023596 AGCD01057056;AGCD01057057;GBCE01134334;XM_005402812;XM_005402814;XM_013503493;XM_013503494;XM_013503495 XP_005402869;XP_005402871;XP_013358947;XP_013358948;XP_013358949 MODEL 8761180 protein-coding Wdr26 WD repeat domain 26 ASSOCIATED WITH Developmental Disease (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955520 950505 983963 + 102006813 AGCD01068039;GBBH01167150;GBDF01044046;XM_005409219;XM_013507050 XP_005409276;XP_013362504 MODEL 9024369 protein-coding Timm10b translocase of inner mitochondrial membrane 10B PARTICIPATES IN carrier pathway of mitochondrial protein import; ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial intermembrane space protein transporter complex (ortholog) NW_004955414 22214457 22217351 + 102023142 AGCD01015449;GBDK01146994;XM_005380148 XP_005380205 MODEL 8982112 protein-coding Pierce1 piercer of microtubule wall 1 INVOLVED IN axoneme assembly (ortholog); cellular response to UV-C (ortholog); cilium movement (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); cytoplasm (ortholog) NW_004955513 4047764 4055692 - 102027889 AGCD01066914;GBBH01031983;XM_005408476;XM_013506706;XR_001231745;XR_001231747;XR_001231748 XP_005408533;XP_013362160 MODEL 8990563 protein-coding Ncoa1 nuclear receptor coactivator 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); nuclear estrogen receptor binding (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); cellular response to Thyroglobulin triiodothyronine (ortholog); cerebellum development (ortholog); PARTICIPATES IN aldosterone signaling pathway; androgen signaling pathway; cortisol signaling pathway; ASSOCIATED WITH breast carcinoma (ortholog); Breast Neoplasms (ortholog); endometrial carcinoma (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955469 6676780 6892587 + 102028288 AGCD01052393;AGCD01052394;AGCD01052395;AGCD01052396;AGCD01052397;AGCD01052398;AGCD01052399;GBCE01085746;XM_005400388;XM_005400389;XM_005400390;XM_005400391;XM_013522653 XP_005400445;XP_005400446;XP_005400447;XP_005400448;XP_013378107 MODEL 8863532 protein-coding Serpinb13 serpin family B member 13 ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (ortholog); protease binding (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN negative regulation of endopeptidase activity (ortholog); negative regulation of keratinocyte apoptotic process (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); multiple congenital anomalies-hypotonia-seizures syndrome 1 (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955402 47376973 47395267 + 102024407 AGCD01001180;AGCD01001181;XM_005373031 XP_005373088 MODEL 8983276 protein-coding Rdm1 RAD52 motif containing 1 FOUND IN cytosol (ortholog); nucleolus (ortholog) NW_004955451 15002098 15011338 + 102022039 AGCD01043590;AGCD01043591;GBBH01050938;GBDF01220846;XM_013519359 XP_013374813 MODEL 9010362 pseudo LOC102010625 coiled-coil domain-containing protein 126 pseudogene NW_004955526 455881 456356 + 102010625 AGCD01069233 MODEL 9024498 protein-coding Ptprt protein tyrosine phosphatase receptor type T ENCODES a protein that exhibits alpha-actinin binding (ortholog); alpha-catenin binding (ortholog); beta-catenin binding (ortholog); INVOLVED IN cell surface receptor protein tyrosine kinase signaling pathway (ortholog); cellular response to interleukin-6 (ortholog); homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); colon cancer (ortholog); FOUND IN cell surface (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955445 14185751 14961000 + 102026919 AGCD01039812;AGCD01039813;AGCD01039814;AGCD01039815;AGCD01039816;AGCD01039817;AGCD01039818;AGCD01039819;AGCD01039820;AGCD01039821;AGCD01039822;AGCD01039823;AGCD01039824;AGCD01039825;AGCD01039826;AGCD01039827;AGCD01039828;GBCE01157673;XM_005392501;XM_013518366 XP_005392558;XP_013373820 MODEL 8792532 protein-coding Lhx5 LIM homeobox 5 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell proliferation in forebrain (ortholog); cell-cell signaling (ortholog); cerebellar Purkinje cell differentiation (ortholog) NW_004955482 9682671 9691155 - 102018930 AGCD01057581;XM_005403229 XP_005403286 MODEL 39132075 snorna SNORD24 Small nucleolar RNA SNORD24 8941360 protein-coding Rsrc2 arginine and serine rich coiled-coil 2 ASSOCIATED WITH obesity (ortholog); short chain acyl-CoA dehydrogenase deficiency (ortholog) NW_004955482 6119810 6138984 + 102029182 AGCD01057374;GBDF01053615;XM_005403076;XM_005403077;XM_013503706 XP_005403133;XP_005403134;XP_013359160 MODEL 8944003 ncrna LOC102008014 uncharacterized LOC102008014 NW_004955427 4746086 4759360 - 102008014 AGCD01026973;GBDF01305344;XR_261235 MODEL 8931097 ncrna LOC102009527 uncharacterized LOC102009527 NW_004955429 19955225 19971743 - 102009527 AGCD01028974;AGCD01028975;XR_001234478;XR_261368 MODEL 9039327 protein-coding Psmb5 proteasome 20S subunit beta 5 ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); proteolysis (ortholog); response to oxidative stress (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Myocardial Ischemia (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955409 37269319 37278957 + 102025768 AGCD01010503;AGCD01010504;GBCE01000116;XM_005377095 XP_005377152 MODEL 8776417 protein-coding Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent activity, acting on DNA (ortholog); ATP-dependent chromatin remodeler activity (ortholog); INVOLVED IN aorta development (ortholog); aortic smooth muscle cell differentiation (ortholog); blastocyst growth (ortholog); PARTICIPATES IN altered SWI/SNF family mediated chromatin remodeling pathway; cortisol signaling pathway; histone modification pathway; ASSOCIATED WITH alpha-mannosidosis (ortholog); amyotrophic lateral sclerosis (ortholog); atrial heart septal defect (ortholog); FOUND IN chromatin (ortholog); euchromatin (ortholog); fibrillar center (ortholog) NW_004955495 2021671 2105155 + 102015538 AGCD01061746;AGCD01061747;GBCB01040754;XM_013505175;XM_013505176;XM_013505177 XP_013360629;XP_013360630;XP_013360631 MODEL 8945075 protein-coding Rasgef1a RasGEF domain family member 1A ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN cell migration (ortholog); positive regulation of Ras protein signal transduction (ortholog) NW_004955546 1304126 1332436 - 102006827 AGCD01072047;AGCD01072048;GBDI01288475;XM_013508392;XM_013508393 XP_013363846;XP_013363847 MODEL 8845518 pseudo LOC102006532 10 kDa heat shock protein, mitochondrial pseudogene NW_004955451 3071650 3074700 - 102006532 AGCD01043035 MODEL 10286401 protein-coding LOC106147026 cytochrome c oxidase assembly protein COX16 homolog, mitochondrial-like NW_004955512 1727629 1783079 + 106147026 AGCD01066649;AGCD01066650;AGCD01066651;AGCD01066652;XM_013506525 XP_013361979 MODEL 8844229 protein-coding LOC102019053 olfactory receptor 51A7-like NW_004955414 20454679 20455620 + 102019053 AGCD01015375;XM_005380057 XP_005380114 MODEL 8936120 protein-coding LOC102003694 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like NW_004955538 3385693 3395187 - 102003694 AGCD01071162;GBCE01032832;XM_005410855;XM_013507906;XM_013507908;XM_013507909;XM_013507910;XR_001232100 XP_005410912;XP_013363360;XP_013363362;XP_013363363;XP_013363364 MODEL 8929664 protein-coding Rab3a RAB3A, member RAS oncogene family ENCODES a protein that exhibits ATPase activator activity (ortholog); ATPase binding (ortholog); GDP-dissociation inhibitor binding (ortholog); INVOLVED IN acrosomal vesicle exocytosis (ortholog); axonogenesis (ortholog); calcium-ion regulated exocytosis (ortholog); PARTICIPATES IN insulin secretion pathway; ASSOCIATED WITH Ependymomas (ortholog); Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); FOUND IN acrosomal vesicle (ortholog); axon (ortholog); endosome (ortholog) NW_004955524 3220108 3224376 + 102019948 AGCD01068867;AGCD01068868;GBDF01156150;XM_005409562 XP_005409619 MODEL 8755955 protein-coding Pde10a phosphodiesterase 10A ENCODES a protein that exhibits 3',5'-cGMP-stimulated cyclic-nucleotide phosphodiesterase activity (ortholog); 3',5'-cyclic-nucleotide phosphodiesterase activity (ortholog); cAMP binding (ortholog); INVOLVED IN cAMP catabolic process (ortholog); cGMP catabolic process (ortholog); regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); Infantile-Onset Limb and Orofacial Dyskinesia (ortholog); FOUND IN cytosol (ortholog); extrinsic component of postsynaptic density membrane (ortholog); glutamatergic synapse (ortholog) NW_004955439 16114530 16370648 + 102030348 AGCD01036018;AGCD01036019;AGCD01036020;AGCD01036021;AGCD01036022;GBDF01010059;XM_005390671 XP_005390728 MODEL 9049584 pseudo LOC102008412 transmembrane protein 208 pseudogene NW_004955417 13153802 13154322 + 102008412 AGCD01018172 MODEL 9054308 protein-coding LOC102011862 uncharacterized LOC102011862 NW_004955474 8241162 8246129 - 102011862 AGCD01054547;GBDF01264907;XM_013502768 XP_013358222 MODEL 8787307 pseudo LOC102024329 cullin-2-like NW_004955471 7469519 7509567 - 102024329 AGCD01053150;AGCD01053151;AGCD01053152;AGCD01053153 MODEL 8869592 protein-coding Trip6 thyroid hormone receptor interactor 6 ENCODES a protein that exhibits interleukin-1 receptor binding (ortholog); kinase binding (ortholog); INVOLVED IN chordate embryonic development (ortholog); positive regulation of cell migration (ortholog); positive regulation of non-canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoskeleton (ortholog); cytosol (ortholog); focal adhesion (ortholog) NW_004955573 102649 107047 - 102012378 AGCD01074962;GBCE01054728;XM_005413686 XP_005413743 MODEL 8733730 protein-coding Slc25a43 solute carrier family 25 member 43 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955534 513757 548027 - 102012576 AGCD01070456;GBCQ01100708;XM_005410446 XP_005410503 MODEL 8862647 protein-coding Snx29 sorting nexin 29 ASSOCIATED WITH schizophrenia (ortholog) NW_004955442 6082362 6607440 - 102023201 AGCD01037580;AGCD01037581;AGCD01037582;AGCD01037583;AGCD01037584;AGCD01037585;AGCD01037586;AGCD01037587;AGCD01037588;AGCD01037589;AGCD01037590;GBDF01272494;XM_005391150;XM_013517836 XP_005391207;XP_013373290 MODEL 39133307 snorna SNORA62 Small nucleolar RNA SNORA62/SNORA6 family 8982394 protein-coding LOC102010292 olfactory receptor 1019 NW_004955511 1765100 1766038 + 102010292 AGCD01066379;XM_005407976 XP_005408033 MODEL 8785823 protein-coding LOC102017529 uncharacterized LOC102017529 NW_004955404 1839048 1853901 - 102017529 AGCD01003231;GBCE01108327;XM_013516796 XP_013372250 MODEL 39133246 snrna U4 U4 spliceosomal RNA 8752892 pseudo LOC102008417 serine/threonine-protein kinase Chk1 pseudogene NW_004955484 9066985 9070701 + 102008417 AGCD01058404 MODEL 8892192 pseudo LOC102011032 aurora kinase A pseudogene NW_004955431 1227505 1229111 - 102011032 AGCD01029892 MODEL 8758910 protein-coding Lhx6 LIM homeobox 6 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cerebral cortex GABAergic interneuron migration (ortholog); cerebral cortex neuron differentiation (ortholog); cerebral cortex radially oriented cell migration (ortholog); FOUND IN nucleus (ortholog) NW_004955419 5835230 5858096 + 102010588 AGCD01019840;GBBH01224881;GBCE01185662;XM_005382538;XM_005382540;XM_013513079;XM_013513080;XM_013513081 XP_005382595;XP_005382597;XP_013368533;XP_013368534;XP_013368535 MODEL 10109529 ncrna LOC106149858 uncharacterized LOC106149858 NW_004955406 9417665 9420960 + 106149858 AGCD01005819;GBCQ01140969;XR_001236304 MODEL 9057027 protein-coding LOC102012661 solute carrier family 23 member 1-like NW_004955494 7357079 7405398 + 102012661 AGCD01061551;AGCD01061552;GBDI01178715;XM_005405484;XM_005405485;XM_005405486;XM_013504941;XM_013504942;XM_013504943;XM_013504944 XP_005405541;XP_005405542;XP_005405543;XP_013360395;XP_013360396;XP_013360397;XP_013360398 MODEL 8914282 ncrna LOC102018674 uncharacterized LOC102018674 NW_004955451 315679 320230 - 102018674 AGCD01042932;GBDK01028726;XR_262564 MODEL 8830948 protein-coding Pex39 peroxisomal biogenesis factor 39 ASSOCIATED WITH infantile Refsum disease (ortholog); Zellweger syndrome (ortholog) NW_004955437 8912183 8912733 - 102025168 AGCD01034507;GBCE01024221;XM_005389727 XP_005389784 MODEL 8940448 protein-coding LOC102021590 putative olfactory receptor 2W6 NW_004955524 202737 203681 - 102021590 AGCD01068669;XM_005409657 XP_005409714 MODEL 39133249 snrna U4 U4 spliceosomal RNA 9062884 ncrna LOC102006535 uncharacterized LOC102006535 NW_004955452 9481411 9485884 + 102006535 AGCD01044238;GBDF01118568;XR_001236068;XR_001236069;XR_001236070;XR_001236071 MODEL 8877649 protein-coding Emx2 empty spiracles homeobox 2 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); brain development (ortholog); cell proliferation in forebrain (ortholog); ASSOCIATED WITH colorectal adenocarcinoma (ortholog); colorectal cancer (ortholog); esophagus adenocarcinoma (ortholog) NW_004955431 22192446 22199141 + 102030337 AGCD01030511;GBDF01112545;XM_005387875 XP_005387932 MODEL 8940320 protein-coding Bst1 bone marrow stromal cell antigen 1 ENCODES a protein that exhibits NAD+ nucleosidase activity, cyclic ADP-ribose generating (ortholog); INVOLVED IN positive regulation of cell population proliferation (ortholog); regulation of actin cytoskeleton organization (ortholog); regulation of calcium-mediated signaling (ortholog); PARTICIPATES IN ADP-ribosylation pathway, cyclic ribosylation; niacin metabolic pathway; ASSOCIATED WITH Joubert syndrome 1 (ortholog); lung disease (ortholog); Parkinson's disease (ortholog); FOUND IN plasma membrane (ortholog); uropod (ortholog) NW_004955480 8273887 8304127 - 102015953 AGCD01056717;AGCD01056718;GBDJ01403584;XM_005402522 XP_005402579 MODEL 8908004 protein-coding Plxnc1 plexin C1 INVOLVED IN regulation of synapse pruning (ortholog); ASSOCIATED WITH endometriosis (ortholog); nephronophthisis 18 (ortholog); syndromic microphthalmia 5 (ortholog); FOUND IN cerebellar climbing fiber to Purkinje cell synapse (ortholog) NW_004955405 30885277 31023947 + 102027377 AGCD01005280;GBDF01119435;XM_005374690;XM_013518393;XM_013518395;XM_013518396;XM_013518398 XP_005374747;XP_013373847;XP_013373849;XP_013373850;XP_013373852 MODEL 8955262 protein-coding Timm13 translocase of inner mitochondrial membrane 13 INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog); FOUND IN fibrillar center (ortholog); mitochondrial inner membrane (ortholog); mitochondrial intermembrane space protein transporter complex (ortholog) NW_004955495 5781024 5782300 + 102013516 AGCD01062029;GBDF01047197;XM_005405902 XP_005405959 MODEL 8951778 protein-coding LOC102023298 retinoic acid early transcript 1L protein-like NW_004955439 11323510 11327726 + 102023298 AGCD01035898;GBDF01255896;XM_013517320 XP_013372774 MODEL 8942378 protein-coding Wdr27 WD repeat domain 27 FOUND IN nucleoplasm (ortholog) NW_004955411 3928775 4123191 + 102021105 AGCD01011562;AGCD01011563;AGCD01011564;AGCD01011565;AGCD01011566;AGCD01011567;AGCD01011568;AGCD01011569;AGCD01011570;AGCD01011571;GBDK01107452;XM_013510744;XM_013510746;XM_013510747;XM_013510748;XM_013510749;XM_013510750 XP_013366198;XP_013366200;XP_013366201;XP_013366202;XP_013366203;XP_013366204 MODEL 8839556 protein-coding LOC102003701 vomeronasal type-1 receptor 1-like NW_004955558 687163 688056 + 102003701 AGCD01073385;XM_005412741 XP_005412798 MODEL 8852191 protein-coding Ncoa2 nuclear receptor coactivator 2 ENCODES a protein that exhibits aryl hydrocarbon receptor binding (ortholog); chromatin binding (ortholog); DNA polymerase binding (ortholog); INVOLVED IN cellular response to Thyroglobulin triiodothyronine (ortholog); cerebellum development (ortholog); circadian regulation of gene expression (ortholog); PARTICIPATES IN aldosterone signaling pathway; altered androgen signaling pathway; androgen signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Breast Neoplasms (ortholog); Chronobiology Disorders (ortholog); FOUND IN cytoplasm (ortholog); dendritic spine (ortholog); nuclear body (ortholog) NW_004955444 9313748 9587109 + 102030577 AGCD01038968;AGCD01038969;AGCD01038970;AGCD01038971;GBBH01006633;GBDF01051363;XM_005392106 XP_005392163 MODEL 8842271 protein-coding Pop5 POP5 homolog, ribonuclease P/MRP subunit ENCODES a protein that exhibits ribonuclease P activity (ortholog); ribonuclease P RNA binding (ortholog); INVOLVED IN tRNA 5'-leader removal (ortholog); tRNA processing (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN multimeric ribonuclease P complex (ortholog); nucleolar ribonuclease P complex (ortholog); nucleolus (ortholog) NW_004955455 11069131 11071814 + 102008497 AGCD01045978;GBCE01034142;XM_005396499 XP_005396556 MODEL 8874230 ncrna LOC102015615 uncharacterized LOC102015615 NW_004955463 3590647 3599119 - 102015615 AGCD01049591;XR_263144 MODEL 8834478 protein-coding LOC102009529 olfactory receptor 5A2-like NW_004955511 3917910 3918862 - 102009529 AGCD01066481;XM_013506389 XP_013361843 MODEL 8703164 protein-coding Psmb6 proteasome 20S subunit beta 6 FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955467 10220435 10222470 + 102015495 AGCD01051555;GBDJ01010777;XM_005399601 XP_005399658 MODEL 8843280 protein-coding Rsrp1 arginine and serine rich protein 1 INVOLVED IN spliceosomal complex assembly (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Rh deficiency syndrome (ortholog); Rh isoimmunization (ortholog); FOUND IN nucleus (ortholog) NW_004955452 4865330 4871049 - 102016127 AGCD01043997;AGCD01043998;GBBH01030866;GBCQ01035581;XM_013519667 XP_013375121 MODEL 8758381 protein-coding Pla2g4d phospholipase A2 group IVD ENCODES a protein that exhibits calcium-dependent phospholipase A2 activity (ortholog); phospholipase A2 activity (ortholog); INVOLVED IN glycerophospholipid catabolic process (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog) NW_004955416 8841645 8860381 - 102017565 AGCD01017071;GBDI01198984;XM_005381323 XP_005381380 MODEL 9043870 protein-coding Pop7 POP7 homolog, ribonuclease P/MRP subunit ENCODES a protein that exhibits ribonuclease P activity (ortholog); ribonuclease P RNA binding (ortholog); INVOLVED IN tRNA 5'-leader removal (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); multimeric ribonuclease P complex (ortholog); nucleolus (ortholog) NW_004955573 217809 218915 - 102014095 AGCD01074968;GBDJ01353728;XM_005413692;XM_005413693 XP_005413749;XP_005413750 MODEL 8977401 protein-coding Slc46a1 solute carrier family 46 member 1 ENCODES a protein that exhibits folic acid transmembrane transporter activity (ortholog); folic acid:proton symporter activity (ortholog); heme transmembrane transporter activity (ortholog); INVOLVED IN folate import across plasma membrane (ortholog); folate transmembrane transport (ortholog); folic acid transport (ortholog); PARTICIPATES IN altered folate cycle metabolic pathway; folate cycle metabolic pathway; folate metabolic pathway; ASSOCIATED WITH anemia (ortholog); chronic kidney disease (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog) NW_004955481 4735325 4741810 + 102004814 AGCD01056950;GBDK01190488;XM_005402755 XP_005402812 MODEL 8907890 protein-coding Slc25a44 solute carrier family 25 member 44 ENCODES a protein that exhibits branched-chain amino acid transmembrane transporter activity (ortholog); INVOLVED IN branched-chain amino acid catabolic process (ortholog); branched-chain amino acid transport (ortholog); regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955545 2347951 2364935 + 102023077 AGCD01071897;AGCD01071898;GBBH01172218;XM_005411661;XM_013508274 XP_005411718;XP_013363728 MODEL 8734368 protein-coding LOC102015618 apolipoprotein L3-like NW_004955413 22612905 22623535 + 102015618 AGCD01014309;GBDI01367440;XM_005379148 XP_005379205 MODEL 8917459 pseudo LOC102012662 protein kinase C iota type pseudogene NW_004955422 13396657 13398480 + 102012662 AGCD01022823 MODEL 9044335 protein-coding Srms src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites ENCODES a protein that exhibits protein tyrosine kinase activity (ortholog); INVOLVED IN peptidyl-tyrosine autophosphorylation (ortholog); peptidyl-tyrosine phosphorylation (ortholog); positive regulation of TORC1 signaling (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); autosomal recessive dyskeratosis congenita 5 (ortholog); benign familial infantile seizures 6 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955528 677332 685903 + 102009417 AGCD01069541;AGCD01069542;GBCE01020325;GBDF01290895;XM_013507512 XP_013362966 MODEL 8789766 protein-coding LOC102006540 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like NW_004955406 38984291 38988524 - 102006540 AGCD01006616;AGCD01006617;GBDF01005693;GBDK01309458;XM_013503363 XP_013358817 MODEL 8774127 protein-coding Bsx brain specific homeobox ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN eating behavior (ortholog); locomotory behavior (ortholog); mammary gland involution (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); schizophrenia (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955412 23796973 23801479 - 102019787 AGCD01013095;XM_005378374 XP_005378431 MODEL 8980364 protein-coding Rab3b RAB3B, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP-dependent protein binding (ortholog); GTPase activity (ortholog); INVOLVED IN antigen processing and presentation (ortholog); peptidyl-cysteine methylation (ortholog); positive regulation of dopamine uptake involved in synaptic transmission (ortholog); FOUND IN cytoplasm (ortholog); dopaminergic synapse (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955464 7117908 7177138 + 102023566 AGCD01050053;AGCD01050054;AGCD01050055;GBCQ01044089;XM_005398596;XM_005398597 XP_005398653;XP_005398654 MODEL 8888104 protein-coding Plxnd1 plexin D1 ENCODES a protein that exhibits protein domain specific binding (ortholog); semaphorin receptor activity (ortholog); INVOLVED IN angiogenesis (ortholog); aorta development (ortholog); branching involved in blood vessel morphogenesis (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); Congenital Heart Defects, Multiple Types, 9 (ortholog); diastolic heart failure (ortholog); FOUND IN axon (ortholog); cell body (ortholog); glutamatergic synapse (ortholog) NW_004955429 17746814 17775072 + 102012112 AGCD01028866;GBBH01026681;GBDF01280799;XM_013515508 XP_013370962 MODEL 8908789 ncrna LOC102003703 uncharacterized LOC102003703 NW_004955444 18667764 18677902 + 102003703 AGCD01039249;GBBH01195406;XR_001235492 MODEL 8736946 protein-coding Prokr1 prokineticin receptor 1 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); ASSOCIATED WITH Hirschsprung's disease (ortholog); Hyperalgesia (ortholog); long QT syndrome (ortholog) NW_004955424 16287666 16301713 - 102020460 AGCD01024738;GBDJ01323907;XM_005385662 XP_005385719 MODEL 8871171 pseudo LOC102008418 40S ribosomal protein S13 pseudogene NW_004955485 7336794 7337638 - 102008418 AGCD01058654;XM_005403816 MODEL 10281189 pseudo LOC106147027 PHD finger protein 3 pseudogene NW_004955512 1301287 1303305 - 106147027 AGCD01066638 MODEL 8981060 protein-coding Smarca5 SNF2 related chromatin remodeling ATPase 5 ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); ATP-dependent chromatin remodeler activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to leukemia inhibitory factor (ortholog); chromatin organization (ortholog); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); Dwarfism (ortholog); genetic disease (ortholog); FOUND IN ACF complex (ortholog); B-WICH complex (ortholog); CERF complex (ortholog) NW_004955471 12206462 12240219 - 102018083 AGCD01053276;AGCD01053277;AGCD01053278;GBBH01063921;GBDK01133237;XM_013522910 XP_013378364 MODEL 8746645 protein-coding Ovgp1 oviductal glycoprotein 1 INVOLVED IN negative regulation of binding of sperm to zona pellucida (ortholog); ASSOCIATED WITH pneumoconiosis (ortholog); FOUND IN egg coat (ortholog); intracellular membrane-bounded organelle (ortholog); microtubule cytoskeleton (ortholog) NW_004955435 14915168 14929171 - 102026667 AGCD01033258;GBDJ01015502;XM_005388948 XP_005389005 MODEL 8880737 ncrna LOC102019055 uncharacterized LOC102019055 NW_004955414 24422049 24443415 + 102019055 AGCD01015546;GBDF01207599;XR_260194 MODEL 8756483 pseudo LOC102021591 origin recognition complex subunit 6 pseudogene NW_004955435 4369736 4386510 + 102021591 AGCD01032826;AGCD01032827;XM_005389096 MODEL 8984025 protein-coding Pla2g4e phospholipase A2 group IVE ENCODES a protein that exhibits N-acyltransferase activity (ortholog); phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); INVOLVED IN N-acylphosphatidylethanolamine metabolic process (ortholog); positive regulation of endocytic recycling (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); early endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955416 8765620 8826184 - 102017011 AGCD01017068;AGCD01017069;AGCD01017070;GBCB01100712;XM_005381321;XM_013512526;XM_013512528 XP_005381378;XP_013367980;XP_013367982 MODEL 9028704 protein-coding LOC102005458 zinc finger protein 793 NW_004955468 1948677 2003834 + 102005458 AGCD01051789;AGCD01051790;AGCD01051791;AGCD01051792;AGCD01051793;GBDF01306191;XM_005399907;XM_005399908;XM_005399911;XM_013522326;XM_013522327;XM_013522328 XP_005399964;XP_005399965;XP_005399968;XP_013377780;XP_013377781;XP_013377782 MODEL 39132692 snorna SNORD28 Small nucleolar RNA SNORD28 8944509 protein-coding Rdx radixin ENCODES a protein that exhibits actin binding (ortholog); ATPase binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN apical protein localization (ortholog); barbed-end actin filament capping (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 24 (ortholog); FOUND IN adherens junction (ortholog); apical part of cell (ortholog); apical plasma membrane (ortholog) NW_004955412 12100436 12184444 - 102009923 AGCD01012805;AGCD01012806;AGCD01012807;AGCD01012808;AGCD01012809;AGCD01012810;AGCD01012811;AGCD01012812;GBCB01000997;XM_005378052;XM_005378053;XM_013511100;XM_013511101;XM_013511102 XP_005378109;XP_005378110;XP_013366554;XP_013366555;XP_013366556 MODEL 9027960 protein-coding Ptpru protein tyrosine phosphatase receptor type U ENCODES a protein that exhibits beta-catenin binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); homotypic cell-cell adhesion (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH Dwarfism (ortholog); Experimental Diabetes Mellitus (ortholog); hypertension (ortholog); FOUND IN cell-cell junction (ortholog) NW_004955452 8223773 8296769 + 102026069 AGCD01044212;AGCD01044213;AGCD01044214;GBDJ01076331;XM_005394989;XM_005394992;XM_005394993;XM_013519598;XM_013519599;XM_013519600 XP_005395046;XP_005395049;XP_005395050;XP_013375052;XP_013375053;XP_013375054 MODEL 8760134 protein-coding LOC102024330 mas-related G-protein coupled receptor member X3-like NW_004955414 33545068 33545694 - 102024330 AGCD01015810;XM_013511746 XP_013367200 MODEL 8868081 protein-coding Tpmt thiopurine S-methyltransferase ENCODES a protein that exhibits S-adenosyl-L-methionine binding (ortholog); thiopurine S-methyltransferase activity (ortholog); INVOLVED IN response to testosterone (ortholog); xenobiotic metabolic process (ortholog); PARTICIPATES IN azathioprine pharmacodynamics pathway; mercaptopurine pharmacodynamics pathway; mercaptopurine pharmacokinetics pathway; ASSOCIATED WITH alopecia (ortholog); autism spectrum disorder (ortholog); inflammatory bowel disease (ortholog) NW_004955483 8052867 8072235 + 102019173 AGCD01057824;GBDK01177579;XM_005403393;XM_013503824;XM_013503825;XM_013503826 XP_005403450;XP_013359278;XP_013359279;XP_013359280 MODEL 9023434 protein-coding Tsbp1 testis expressed basic protein 1 ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog) NW_004955437 830178 915199 - 102007696 AGCD01034169;AGCD01034170;AGCD01034171;AGCD01034172;AGCD01034173;AGCD01034174;GBDF01082664;XM_013516714;XM_013516715;XM_013516716;XM_013516717 XP_013372168;XP_013372169;XP_013372170;XP_013372171 MODEL 8799017 protein-coding LOC102006887 putative olfactory receptor 2W6 NW_004955465 13466321 13483771 + 102006887 AGCD01050609;AGCD01050610;AGCD01050611;GBDF01209454;XM_005399013;XM_013521796 XP_005399070;XP_013377250 MODEL 8806508 pseudo LOC102010293 olfactory receptor 10AG1-like NW_004955511 885492 889414 - 102010293 AGCD01066346 MODEL 8771358 pseudo LOC102006542 insulin-like growth factor 2 mRNA-binding protein 2 NW_004955407 20470335 20479986 - 102006542 AGCD01007330 MODEL 10281219 ncrna LOC106149859 uncharacterized LOC106149859 NW_004955455 5273738 5275547 - 106149859 AGCD01045720;GBDJ01386559;XR_001236305 MODEL 8820384 protein-coding LOC102011465 olfactory receptor 4D9-like NW_004955511 4030217 4031152 + 102011465 AGCD01066488;XM_005408064 XP_005408121 MODEL 9010183 protein-coding LOC102003706 WAP four-disulfide core domain protein 6A-like NW_004955445 11697127 11701399 + 102003706 AGCD01039713;GBDF01265082;XM_005392421 XP_005392478 MODEL 9012331 protein-coding Slc46a2 solute carrier family 46 member 2 ENCODES a protein that exhibits cyclic-GMP-AMP transmembrane transporter activity (ortholog); INVOLVED IN cyclic-GMP-AMP transmembrane import across plasma membrane (ortholog); negative regulation of T cell apoptotic process (ortholog); positive regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955419 14547393 14557447 + 102030424 AGCD01020028;GBDJ01084745;XM_005382700 XP_005382757 MODEL 8781748 protein-coding Serpinb2 serpin family B member 2 PARTICIPATES IN fibrinolysis pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); chromosome 18q deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN cornified envelope (ortholog) NW_004955402 47707182 47720688 + 102026493 AGCD01001192;GBBH01024006;XM_005373036 XP_005373093 MODEL 8921758 protein-coding Prokr2 prokineticin receptor 2 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN circadian rhythm (ortholog); ASSOCIATED WITH amenorrhea (ortholog); amphetamine abuse (ortholog); epilepsy (ortholog); FOUND IN plasma membrane (ortholog) NW_004955415 15867017 15878471 - 102011652 AGCD01016363;GBCE01138495;XM_005380830;XM_005380831;XM_013512101 XP_005380887;XP_005380888;XP_013367555 MODEL 8954381 pseudo LOC102011864 up-regulated during skeletal muscle growth protein 5 pseudogene NW_004955416 8440518 8440842 - 102011864 AGCD01017056;XM_005381302 MODEL 8847982 protein-coding Pde11a phosphodiesterase 11A ENCODES a protein that exhibits 3',5'-cGMP-stimulated cyclic-nucleotide phosphodiesterase activity (ortholog); cGMP binding (ortholog); INVOLVED IN negative regulation of cAMP/PKA signal transduction (ortholog); negative regulation of cGMP-mediated signaling (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Bardet-Biedl syndrome 16 (ortholog); primary pigmented nodular adrenocortical disease 2 (ortholog); schizophrenia (ortholog); FOUND IN perikaryon (ortholog) NW_004955403 18804789 19180612 + 102004877 AGCD01002114;AGCD01002115;AGCD01002116;AGCD01002117;AGCD01002118;AGCD01002119;GBDF01055985;XM_005373398 XP_005373455 MODEL 8826631 protein-coding LOC102012663 adenylate kinase isoenzyme 1 NW_004955495 3193444 3209238 - 102012663 AGCD01061835;AGCD01061836;AGCD01061837;GBDF01307680;XM_005405718;XR_001231378;XR_264139;XR_264140;XR_264141 XP_005405775 MODEL 9022984 protein-coding Timm17a translocase of inner mitochondrial membrane 17A ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN positive regulation of protein processing (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955406 38020886 38031651 + 102020305 AGCD01006582;GBDF01003865;XM_005375197 XP_005375254 MODEL 8708577 protein-coding Triqk triple QxxK/R motif containing NW_004955417 9397726 9450794 - 102017014 AGCD01018052;GBDK01025200;XM_005381781;XM_005381782;XM_005381783;XM_013512847;XM_013512848 XP_005381838;XP_005381839;XP_005381840;XP_013368301;XP_013368302 MODEL 39132820 snorna SNORA63 Small nucleolar RNA SNORA63 8853049 protein-coding Rhot2 ras homolog family member T2 INVOLVED IN cellular homeostasis (ortholog); mitochondrial outer membrane permeabilization (ortholog); mitochondrion transport along microtubule (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955442 16528886 16534856 - 102021053 AGCD01037901;GBCE01095142;XM_005391623;XM_005391624;XM_013517763 XP_005391680;XP_005391681;XP_013373217 MODEL 9052014 pseudo LOC102011036 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L pseudogene NW_004955434 9417014 9421344 + 102011036 AGCD01032299;AGCD01032300 MODEL 8944041 protein-coding Prom1 prominin 1 ENCODES a protein that exhibits actinin binding (ortholog); cadherin binding (ortholog); INVOLVED IN camera-type eye photoreceptor cell differentiation (ortholog); glomerular parietal epithelial cell differentiation (ortholog); photoreceptor cell maintenance (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); Colorectal Neoplasms (ortholog); cone-rod dystrophy (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); cell projection (ortholog) NW_004955480 7955501 8059537 + 102013828 AGCD01056713;AGCD01056714;AGCD01056715;GBBH01213994;XM_005402515;XM_005402516;XM_005402519;XM_013503331 XP_005402572;XP_005402573;XP_005402576;XP_013358785 MODEL 8979789 pseudo LOC102009531 eukaryotic translation initiation factor 4B pseudogene NW_004955512 1013969 1019267 + 102009531 AGCD01066629;XR_264452 MODEL 9003884 protein-coding Rab3c RAB3C, member RAS oncogene family ENCODES a protein that exhibits GTP-dependent protein binding (ortholog); GTPase activity (ortholog); myosin V binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); regulation of exocytosis (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog); synaptic vesicle (ortholog); synaptic vesicle membrane (ortholog) NW_004955446 9335298 9577919 - 102009894 AGCD01040159;AGCD01040160;AGCD01040161;GBCQ01023934;XM_005392675;XM_013518391;XM_013518392 XP_005392732;XP_013373845;XP_013373846 MODEL 8832697 protein-coding Lhx8 LIM homeobox 8 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN female gonad development (ortholog); forebrain neuron development (ortholog); forebrain neuron differentiation (ortholog); ASSOCIATED WITH Binge Drinking (ortholog); FOUND IN female germ cell nucleus (ortholog) NW_004955423 17644691 17668969 - 102026542 AGCD01023858;AGCD01023859;GBBH01120861;XM_013514370 XP_013369824 MODEL 8745727 protein-coding Trir telomerase RNA component interacting RNase ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); 5'-3' exonuclease activity (ortholog); INVOLVED IN rRNA catabolic process (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog) NW_004955415 31831093 31834796 - 102020242 AGCD01016698;GBDK01012972;XM_005381022 XP_005381079 MODEL 39132817 snorna SNORA63 Small nucleolar RNA SNORA63 8710056 protein-coding LOC102018675 uncharacterized LOC102018675 NW_004955622 83258 210783 - 102018675 AGCD01077384;AGCD01077385;AGCD01077386;AGCD01077387;AGCD01077388;AGCD01077389;AGCD01077390;AGCD01077391;AGCD01077392;AGCD01077393;AGCD01077394;AGCD01077395;XM_013510157 XP_013365611 MODEL 8993034 protein-coding Popdc1 popeye domain cAMP effector 1 ENCODES a protein that exhibits cAMP binding (ortholog); structural molecule activity (ortholog); INVOLVED IN cell migration involved in heart development (ortholog); epithelial cell-cell adhesion (ortholog); heart development (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2X (ortholog); genetic disease (ortholog); limb-girdle muscular dystrophy (ortholog); FOUND IN bicellular tight junction (ortholog); caveola (ortholog); cell junction (ortholog) NW_004955411 30517917 30548424 - 102030054 AGCD01012257;AGCD01012258;GBCB01000928;GBDF01087341;XM_013510787 XP_013366241 MODEL 9042599 ncrna LOC102015620 uncharacterized LOC102015620 NW_004955468 9394422 9397630 - 102015620 AGCD01052047;GBCB01074100;XR_001236870;XR_001236871;XR_263409;XR_263411 MODEL 9060759 protein-coding LOC102010294 chromosome unknown open reading frame, human C4orf50 ASSOCIATED WITH tooth and nail syndrome (ortholog) NW_004955514 4112935 4206895 + 102010294 AGCD01067127;AGCD01067128;GBDF01183618;XM_005408860 XP_005408917 MODEL 8815742 protein-coding Pex5 peroxisomal biogenesis factor 5 ENCODES a protein that exhibits enzyme binding (ortholog); peroxisome matrix targeting signal-1 binding (ortholog); peroxisome membrane targeting sequence binding (ortholog); INVOLVED IN cell development (ortholog); cellular response to reactive oxygen species (ortholog); cerebral cortex cell migration (ortholog); ASSOCIATED WITH Cerebrohepatorenal Syndrome, Variant Types (ortholog); developmental and epileptic encephalopathy 21 (ortholog); Fanconi anemia complementation group D2 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955413 4736189 4755559 + 102013273 AGCD01013625;AGCD01013626;GBDF01262971;XM_013511628;XM_013511629;XM_013511630;XM_013511631;XM_013511632;XM_013511633;XM_013511634 XP_013367082;XP_013367083;XP_013367084;XP_013367085;XP_013367086;XP_013367087;XP_013367088 MODEL 8790518 pseudo LOC102010631 ras-related protein Rab-18 pseudogene NW_004955438 11389072 11389615 - 102010631 AGCD01035237 MODEL 8839748 protein-coding En1 engrailed homeobox 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); central nervous system neuron differentiation (ortholog); cerebellum development (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); ENDOVE SYNDROME, LIMB-BRAIN TYPE (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN nucleus (ortholog) NW_004955459 10839581 10844198 + 102008704 AGCD01048200;GBCB01074283;XM_005397707 XP_005397764 MODEL 8967388 ncrna LOC102008015 uncharacterized LOC102008015 NW_004955506 4275716 4276076 - 102008015 AGCD01065332;XR_264349 MODEL 8769827 ncrna LOC102017530 uncharacterized LOC102017530 NW_004955452 3571075 3600205 + 102017530 AGCD01043930;AGCD01043931;GBDI01141659;XR_001236010;XR_262646 MODEL 9017176 protein-coding LOC102011468 carnosine N-methyltransferase NW_004955512 4044108 4112888 + 102011468 AGCD01066722;AGCD01066723;AGCD01066724;AGCD01066725;AGCD01066726;AGCD01066727;AGCD01066728;AGCD01066729;GBCE01103835;GBDF01121011;XM_013506528 XP_013361982 MODEL 8719979 protein-coding Srp14 signal recognition particle 14 INVOLVED IN protein targeting to ER (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog); FOUND IN nucleus (ortholog); signal recognition particle, endoplasmic reticulum targeting (ortholog) NW_004955416 7006240 7009569 - 102013931 AGCD01016961;GBDJ01001152;XM_005381213 XP_005381270 MODEL 8714037 protein-coding Ncoa3 nuclear receptor coactivator 3 ENCODES a protein that exhibits chromatin binding (ortholog); disordered domain specific binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cell dedifferentiation (ortholog); cellular response to estradiol stimulus (ortholog); cerebellum development (ortholog); PARTICIPATES IN androgen signaling pathway; cortisol signaling pathway; estrogen signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Bone Neoplasms (ortholog); breast cancer (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955445 10020916 10085318 - 102010000 AGCD01039639;AGCD01039640;AGCD01039641;AGCD01039642;AGCD01039643;GBDF01157839;GBDI01127910;XM_005392342 XP_005392399 MODEL 39133603 snorna SNORD29 Small nucleolar RNA SNORD29 8730836 protein-coding Wdr3 WD repeat domain 3 INVOLVED IN ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH papillary thyroid carcinoma (ortholog); FOUND IN nuclear membrane (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955435 21038053 21069213 + 102012798 AGCD01033468;GBCE01085305;XM_005389069;XM_005389070 XP_005389126;XP_005389127 MODEL 8859465 protein-coding Btaf1 B-TFIID TATA-box binding protein associated factor 1 ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); transcription coregulator activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955425 1239640 1350327 - 102014377 AGCD01025219;AGCD01025220;AGCD01025221;AGCD01025222;AGCD01025223;GBBH01149822;GBDK01319184;XM_013514876 XP_013370330 MODEL 8928379 protein-coding Rasgef1b RasGEF domain family member 1B ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); ASSOCIATED WITH COVID-19 (ortholog); juvenile rheumatoid arthritis (ortholog) NW_004955433 5605548 6388880 - 102030339 AGCD01031513;AGCD01031514;AGCD01031515;AGCD01031516;AGCD01031517;AGCD01031518;AGCD01031519;AGCD01031520;AGCD01031521;AGCD01031522;AGCD01031523;AGCD01031524;AGCD01031525;AGCD01031526;AGCD01031527;AGCD01031528;AGCD01031529;AGCD01031530;AGCD01031531;AGCD01031532;AGCD01031533;GBCE01011897;XM_005388230;XM_005388233;XM_005388234;XM_013516120;XM_013516121 XP_005388287;XP_005388290;XP_005388291;XP_013371574;XP_013371575 MODEL 8901449 protein-coding Parp14 poly(ADP-ribose) polymerase family member 14 ENCODES a protein that exhibits enzyme binding (ortholog); NAD+ binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); INVOLVED IN negative regulation of gene expression (ortholog); negative regulation of type II interferon-mediated signaling pathway (ortholog); negative regulation of tyrosine phosphorylation of STAT protein (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; interleukin-4 signaling pathway; ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955427 21878980 21929097 + 102012562 AGCD01027461;GBDI01230166;XM_005386519;XM_013515129 XP_005386576;XP_013370583 MODEL 8699863 protein-coding Pla2g4f phospholipase A2 group IVF ENCODES a protein that exhibits calcium-dependent phospholipase A2 activity (ortholog); lysophospholipase activity (ortholog); phospholipase A2 activity (ortholog); INVOLVED IN arachidonate secretion (ortholog); cellular response to antibiotic (ortholog); fatty acid transport (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); ruffle membrane (ortholog) NW_004955416 8876560 8889764 - 102017867 AGCD01017071;GBBH01062799;XM_005381324;XM_005381325;XM_013512650 XP_005381381;XP_005381382;XP_013368104 MODEL 8786433 protein-coding LOC102012664 guanylate-binding protein 5 NW_004955423 5021524 5040124 + 102012664 AGCD01023551;AGCD01023552;AGCD01023553;GBDK01006467;XM_005385100 XP_005385157 MODEL 8857153 protein-coding Pierce2 piercer of microtubule wall 2 INVOLVED IN axoneme assembly (ortholog); cilium movement (ortholog); determination of left/right symmetry (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Griscelli syndrome type 2 (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); sperm flagellum (ortholog) NW_004955409 523414 530630 - 102020534 AGCD01009154;GBDJ01171942;XM_013510271;XR_001232628;XR_001232629 XP_013365725 MODEL 8958460 protein-coding Srp19 signal recognition particle 19 ENCODES a protein that exhibits 7S RNA binding (ortholog); ribosome binding (ortholog); RNA binding (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); nucleolus (ortholog) NW_004955418 2551533 2558252 - 102010161 AGCD01018773;GBDF01196819;XM_005382144;XM_013512933;XM_013512935 XP_005382201;XP_013368387;XP_013368389 MODEL 8857593 ncrna LOC102012665 uncharacterized LOC102012665 NW_004955425 2406340 2448278 - 102012665 AGCD01025262;AGCD01025263;GBDF01006731;XR_261120 MODEL 8817072 protein-coding Rsu1 Ras suppressor protein 1 INVOLVED IN neural precursor cell proliferation (ortholog); positive regulation of cell-substrate adhesion (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH Chloracne (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog); osteoporosis (ortholog); FOUND IN focal adhesion (ortholog) NW_004955429 11043205 11234698 + 102029209 AGCD01028685;GBBH01187919;XM_005386967;XM_005386968;XR_261324 XP_005387024;XP_005387025 MODEL 8969148 protein-coding Ovol1 ovo like transcriptional repressor 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN epidermis development (ortholog); germline cell cycle switching, mitotic to meiotic cell cycle (ortholog); keratinocyte proliferation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); atopic dermatitis (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN nucleus (ortholog) NW_004955422 19524420 19528938 - 102028647 AGCD01023015;GBDI01108277;GBDK01176882;XM_013513853 XP_013369307 MODEL 39132805 snorna SNORA63 Small nucleolar RNA SNORA63 8858913 protein-coding LOC102023301 olfactory receptor 4Q3 NW_004955550 635023 635988 - 102023301 AGCD01072513;XM_005412136 XP_005412193 MODEL 8958354 protein-coding Trit1 tRNA isopentenyltransferase 1 ENCODES a protein that exhibits tRNA dimethylallyltransferase activity (ortholog); INVOLVED IN mitochondrial tRNA modification (ortholog); tRNA modification (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); combined oxidative phosphorylation deficiency 35 (ortholog); generalized epilepsy (ortholog); FOUND IN mitochondrion (ortholog) NW_004955452 17330446 17378579 - 102029821 AGCD01044550;AGCD01044551;AGCD01044552;GBDK01277036;XM_005395267;XM_005395268;XM_013519693 XP_005395324;XP_005395325;XP_013375147 MODEL 9040895 protein-coding LOC102005462 chromosome unknown open reading frame, human C19orf53 NW_004955415 32590287 32592465 + 102005462 AGCD01016726;GBDI01013906;XM_005381066 XP_005381123 MODEL 8862313 ncrna LOC102011865 uncharacterized LOC102011865 NW_004955477 3946286 3949237 + 102011865 AGCD01055577;GBDF01098162;XR_263654 MODEL 8990003 protein-coding Snx3 sorting nexin 3 ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN hemoglobin biosynthetic process (ortholog); host-mediated suppression of symbiont invasion (ortholog); intralumenal vesicle formation (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); COVID-19 (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955411 33339974 33344563 - 102011098 AGCD01012354;GBCE01000037;XM_005377844 XP_005377901 MODEL 9008992 protein-coding Ptprz1 protein tyrosine phosphatase receptor type Z1 ENCODES a protein that exhibits fibroblast growth factor binding (ortholog); integrin binding (ortholog); phosphatase activity (ortholog); INVOLVED IN axonal fasciculation (ortholog); axonogenesis (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Brain Hypoxia-Ischemia (ortholog); Brain Injuries (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); dendritic spine (ortholog) NW_004955479 3611658 3734225 + 102021008 AGCD01056301;GBDI01323065;XM_013503257 XP_013358711 MODEL 8707218 pseudo LOC102011469 60S ribosomal protein L36a-like NW_004955431 5509247 5509567 - 102011469 AGCD01030034 MODEL 8749426 protein-coding Rhou ras homolog family member U ENCODES a protein that exhibits GTPase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cytoskeleton organization (ortholog); G1/S transition of mitotic cell cycle (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955492 8949003 8955502 - 102027538 AGCD01060832;GBCB01088846;GBDJ01277125;XM_005405025 XP_005405082 MODEL 39131727 snorna SNORD30 Small nucleolar RNA SNORD30 9030372 pseudo LOC102006890 small ubiquitin-related modifier 2 pseudogene NW_004955412 9882267 9886715 + 102006890 AGCD01012749 MODEL 8726988 protein-coding Ncoa4 nuclear receptor coactivator 4 INVOLVED IN intracellular iron ion homeostasis (ortholog); protein targeting to lysosome (ortholog); response to hormone (ortholog); PARTICIPATES IN iron homeostasis pathway; ASSOCIATED WITH Cockayne syndrome B (ortholog); invasive ductal carcinoma (ortholog); megacolon (ortholog); FOUND IN autolysosome (ortholog) NW_004955556 392412 413643 + 102024513 AGCD01073175;GBCQ01033190;XM_005412555;XM_005412556;XM_013508789 XP_005412612;XP_005412613;XP_013364243 MODEL 8863916 ncrna LOC102008419 uncharacterized LOC102008419 NW_004955420 12338859 12346661 + 102008419 AGCD01020861;GBDF01156176;XR_001233788;XR_001233789;XR_260709 MODEL 8925818 protein-coding Smarcal1 SNF2 related chromatin remodeling annealing helicase 1 ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); ATP-dependent DNA/DNA annealing activity (ortholog); INVOLVED IN DNA damage response (ortholog); double-strand break repair via nonhomologous end joining (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH atrioventricular septal defect (ortholog); atypical hemolytic-uremic syndrome (ortholog); Dwarfism (ortholog); FOUND IN DNA replication factor A complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955453 16724286 16784129 - 102023325 AGCD01044911;AGCD01044912;GBDF01006346;XM_005395685;XM_005395686 XP_005395742;XP_005395743 MODEL 8759701 protein-coding Parp16 poly(ADP-ribose) polymerase family member 16 ENCODES a protein that exhibits kinase binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); endoplasmic reticulum unfolded protein response (ortholog); IRE1-mediated unfolded protein response (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); nemaline myopathy 6 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum tubular network (ortholog); nuclear envelope (ortholog) NW_004955450 10157731 10177939 + 102008047 AGCD01042608;GBDI01292025;GBDK01358905;XM_013519015 XP_013374469 MODEL 8809089 protein-coding LOC102009539 uncharacterized LOC102009539 NW_004955436 8518608 8525672 + 102009539 AGCD01033743;XM_013516636;XM_013516637;XM_013516638 XP_013372090;XP_013372091;XP_013372092 MODEL 8745076 protein-coding Rab3d RAB3D, member RAS oncogene family ENCODES a protein that exhibits GTP-dependent protein binding (ortholog); myosin V binding (ortholog); INVOLVED IN bone resorption (ortholog); peptidyl-cysteine methylation (ortholog); positive regulation of regulated secretory pathway (ortholog); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog); FOUND IN cytoplasmic microtubule (ortholog); secretory vesicle (ortholog); zymogen granule (ortholog) NW_004955495 2254336 2259211 - 102018939 AGCD01061759;AGCD01061760;GBBH01063907;XM_005405649;XM_013505109 XP_005405706;XP_013360563 MODEL 8766255 protein-coding Slc46a3 solute carrier family 46 member 3 ENCODES a protein that exhibits copper ion transmembrane transporter activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN cellular response to 2,3,7,8-tetrachlorodibenzodioxine (ortholog); vacuolar transmembrane transport (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN lysosomal membrane (ortholog) NW_004955497 8015244 8034195 - 102007674 AGCD01062692;GBCE01134273;XM_005406361;XM_005406362;XR_264212 XP_005406418;XP_005406419 MODEL 8914346 protein-coding Popdc2 popeye domain cAMP effector 2 ENCODES a protein that exhibits cAMP binding (ortholog); INVOLVED IN regulation of heart rate (ortholog); regulation of membrane potential (ortholog); sinoatrial node cell development (ortholog); FOUND IN membrane (ortholog); sarcolemma (ortholog) NW_004955427 19347880 19367759 - 102020590 AGCD01027365;GBCB01073022;XM_005386452;XM_005386453;XM_013515175 XP_005386509;XP_005386510;XP_013370629 MODEL 8874034 ncrna LOC102024333 uncharacterized LOC102024333 NW_004955417 10478200 10486529 + 102024333 AGCD01018071;GBDK01414540;XR_001233463;XR_001233464 MODEL 9017711 protein-coding Pde12 phosphodiesterase 12 ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); exonuclease activity (ortholog); poly(A)-specific ribonuclease activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to dsRNA (ortholog); cellular response to interferon-alpha (ortholog); ASSOCIATED WITH Cardiovirus Infections (ortholog); Pyruvate Dehydrogenase E1-Beta Deficiency (ortholog); respiratory syncytial virus infectious disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955430 7272911 7277726 + 102014594 AGCD01029342;GBDF01052386;XM_005387409 XP_005387466 MODEL 8799405 protein-coding Rec114 REC114 meiotic recombination protein INVOLVED IN meiotic DNA double-strand break formation (ortholog); oogenesis (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); Brugada syndrome 8 (ortholog); FOUND IN chromosome (ortholog) NW_004955450 4002734 4076292 - 102023415 AGCD01042453;AGCD01042454;GBDF01155136;XM_005393591;XM_005393592;XM_005393593;XM_005393594 XP_005393648;XP_005393649;XP_005393650;XP_005393651 MODEL 8984656 protein-coding Ovol2 ovo like zinc finger 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN angiogenesis (ortholog); cell population proliferation (ortholog); dorsal/ventral pattern formation (ortholog); ASSOCIATED WITH congenital dyserythropoietic anemia type II (ortholog); familial hyperinsulinemic hypoglycemia 1 (ortholog); pilomatrixoma (ortholog); FOUND IN nucleus (ortholog) NW_004955415 26825284 26843438 - 102012638 AGCD01016608;GBDK01135062;XM_005380915 XP_005380972 MODEL 9021175 protein-coding Tpo thyroid peroxidase ENCODES a protein that exhibits iodide peroxidase activity (ortholog); INVOLVED IN cellular response to nitric oxide (ortholog); embryonic hemopoiesis (ortholog); response to lipid (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH anterior segment dysgenesis 7 (ortholog); autoimmune disease (ortholog); congenital hypothyroidism (ortholog); FOUND IN cell surface (ortholog) NW_004955487 485029 530287 - 102007022 AGCD01059218;AGCD01059219;AGCD01059220;AGCD01059221;GBDI01010368;GBDI01010369;XM_005404339 XP_005404396 MODEL 39133251 snrna U4 U4 spliceosomal RNA 8888424 protein-coding Psmb7 proteasome 20S subunit beta 7 ASSOCIATED WITH atrial fibrillation (ortholog); coat/hair pigmentation trait (ortholog); COVID-19 (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955419 3706273 3761603 + 102024910 AGCD01019733;GBDF01010387;XM_005382496 XP_005382553 MODEL 8793634 protein-coding Tsc1 TSC complex subunit 1 ENCODES a protein that exhibits ATPase inhibitor activity (ortholog); Hsp70 protein binding (ortholog); Hsp90 protein binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); adaptive immune response (ortholog); adult locomotory behavior (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; mTOR signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); anterior segment dysgenesis (ortholog); autism spectrum disorder (ortholog); FOUND IN actin filament (ortholog); cell cortex (ortholog); cell projection (ortholog) NW_004955513 2197037 2244992 - 102030108 AGCD01066870;AGCD01066871;GBCE01045723;XM_005408396;XM_005408397;XM_005408399;XM_013506599;XM_013506600;XM_013506601;XM_013506602;XM_013506603 XP_005408453;XP_005408454;XP_005408456;XP_013362053;XP_013362054;XP_013362055;XP_013362056;XP_013362057 MODEL 9039742 protein-coding Pm20d1 peptidase M20 domain containing 1 ENCODES a protein that exhibits hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); amide biosynthetic process (ortholog); amide catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN extracellular space (ortholog) NW_004955406 41522800 41544332 - 102014210 AGCD01006685;GBDI01244269;XM_005375377 XP_005375434 MODEL 10188288 ncrna LOC106147028 uncharacterized LOC106147028 NW_004955512 2019604 2023079 - 106147028 AGCD01066665;GBCE01041324;XR_001231726 MODEL 8982372 protein-coding Slc25a45 solute carrier family 25 member 45 ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog) NW_004955422 19854935 19864585 + 102010271 AGCD01023041;AGCD01023042;GBDK01101373;XM_005384496;XM_005384497 XP_005384553;XP_005384554 MODEL 8896999 protein-coding Wdr31 WD repeat domain 31 NW_004955419 14150881 14168256 + 102024679 AGCD01020013;GBDF01067538;XM_005382681 XP_005382738 MODEL 8844030 protein-coding Pla2g5 phospholipase A2 group V ENCODES a protein that exhibits calcium-dependent phospholipase A2 activity (ortholog); calcium-independent phospholipase A2 activity (ortholog); heparin binding (ortholog); INVOLVED IN arachidonate secretion (ortholog); leukotriene biosynthetic process (ortholog); low-density lipoprotein particle remodeling (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog); FOUND IN cell surface (ortholog); early phagosome (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955452 662281 721507 + 102015593 AGCD01043822;AGCD01043823;AGCD01043824;AGCD01043825;AGCD01043826;AGCD01043827;GBDJ01199830;XM_005394670;XM_005394671;XM_005394672;XM_013519728;XM_013519729;XM_013519730 XP_005394727;XP_005394728;XP_005394729;XP_013375182;XP_013375183;XP_013375184 MODEL 8806863 protein-coding LOC102019058 guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7-like NW_004955415 31786275 31788023 + 102019058 AGCD01016697;XM_005381019;XM_013512238 XP_005381076;XP_013367692 MODEL 8911021 protein-coding Ptrh1 peptidyl-tRNA hydrolase 1 homolog ENCODES a protein that exhibits aminoacyl-tRNA hydrolase activity (ortholog); INVOLVED IN rescue of stalled ribosome (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Iu (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); FOUND IN mitochondrion (ortholog) NW_004955419 940508 942375 + 102028195 AGCD01019624;GBDI01009713;XM_005382417 XP_005382474 MODEL 8782723 ncrna LOC102006893 uncharacterized LOC102006893 NW_004955468 7026096 7045290 - 102006893 AGCD01051993;AGCD01051994;GBCE01020831;XR_001236952;XR_263395 MODEL 9014299 protein-coding LOC102010296 uncharacterized LOC102010296 NW_004955516 3709709 3720497 + 102010296 AGCD01067503;AGCD01067504;GBCE01103721;XM_005409002 XP_005409059 MODEL 8968185 ncrna LOC102010634 uncharacterized LOC102010634 NW_004955440 18844372 18859013 - 102010634 AGCD01036623;GBDF01150944;XR_262045 MODEL 8957352 ncrna LOC102015621 uncharacterized LOC102015621 NW_004955413 32654378 32678418 + 102015621 AGCD01014642;GBDF01124715;XR_001232938;XR_001232939 MODEL 9023783 protein-coding Serpinb5 serpin family B member 5 INVOLVED IN extracellular matrix organization (ortholog); morphogenesis of an epithelium (ortholog); prostate gland morphogenesis (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); chromosome 18q deletion syndrome (ortholog); Colonic Neoplasms (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); sarcoplasm (ortholog) NW_004955402 47248665 47276017 + 102023762 AGCD01001178;GBBH01168613;XM_005373029;XM_013511236;XM_013511239;XM_013511244 XP_005373086;XP_013366690;XP_013366693;XP_013366698 MODEL 8861164 protein-coding Ncoa5 nuclear receptor coactivator 5 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN glucose homeostasis (ortholog); insulin receptor signaling pathway (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); galactosialidosis (ortholog); FOUND IN actin cytoskeleton (ortholog); nucleoplasm (ortholog) NW_004955445 11219630 11251856 + 102021808 AGCD01039683;AGCD01039684;AGCD01039685;GBDF01047631;XM_005392387;XM_005392388;XM_013518291 XP_005392444;XP_005392445;XP_013373745 MODEL 8839605 protein-coding Srp54 signal recognition particle 54 ENCODES a protein that exhibits 7S RNA binding (ortholog); endoplasmic reticulum signal peptide binding (ortholog); GDP binding (ortholog); INVOLVED IN granulocyte differentiation (ortholog); protein targeting to ER (ortholog); SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); ectodermal dysplasia and immunodeficiency 2 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955409 25977226 26016351 - 102004905 AGCD01010144;AGCD01010145;AGCD01010146;AGCD01010147;AGCD01010148;GBDK01188091;XM_005376933;XM_005376934 XP_005376990;XP_005376991 MODEL 8973291 ncrna LOC102017532 uncharacterized LOC102017532 NW_004955405 28134343 28156820 + 102017532 AGCD01005231;AGCD01005232;GBDF01124119;XR_259401 MODEL 39132808 snorna SNORA63 Small nucleolar RNA SNORA63 8998305 pseudo LOC102023304 protein FRG1 pseudogene NW_004955443 7681898 7684014 + 102023304 AGCD01038294;XR_262182 MODEL 9000347 protein-coding Parp2 poly(ADP-ribose) polymerase 2 ENCODES a protein that exhibits chromatin binding (ortholog); damaged DNA binding (ortholog); NAD DNA ADP-ribosyltransferase activity (ortholog); INVOLVED IN base-excision repair (ortholog); decidualization (ortholog); DNA ADP-ribosylation (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Cardiomegaly (ortholog); lipodystrophy (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955550 1138976 1152293 + 102020614 AGCD01072551;GBDF01189210;XM_005412049 XP_005412106 MODEL 8707549 protein-coding Timm17b translocase of inner mitochondrial membrane 17B ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); TIM23 mitochondrial import inner membrane translocase complex (ortholog) NW_004955543 425076 430767 - 102027342 AGCD01071585;GBCE01032810;XM_005411288 XP_005411345 MODEL 8751626 pseudo LOC102005464 KATNB1-like protein 1 NW_004955415 14290724 14297874 + 102005464 AGCD01016295 MODEL 10372412 ncrna LOC106149860 uncharacterized LOC106149860 NW_004955402 2467673 2470425 + 106149860 AGCD01000079;GBDF01218595;XR_001236306 MODEL 8761737 protein-coding Slc48a1 solute carrier family 48 member 1 ENCODES a protein that exhibits heme binding (ortholog); heme transmembrane transporter activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); heme export (ortholog); heme export from vacuole to cytoplasm (ortholog); FOUND IN cytoplasm (ortholog); endolysosome (ortholog); endosome membrane (ortholog) NW_004955500 6675631 6691942 + 102020028 AGCD01063890;AGCD01063891;GBBH01089082;XM_005406620;XM_005406621;XM_005406622 XP_005406677;XP_005406678;XP_005406679 MODEL 8789233 protein-coding Ovol3 ovo like zinc finger 3 ASSOCIATED WITH Brugada syndrome 5 (ortholog); hereditary spastic paraplegia 75 (ortholog) NW_004955468 2495567 2498508 - 102009591 AGCD01051823;AGCD01051824;GBDF01064045;XM_013522433 XP_013377887 MODEL 9065422 protein-coding Lhx9 LIM homeobox 9 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell population proliferation (ortholog); female gonad development (ortholog); gonad morphogenesis (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog) NW_004955406 34341972 34363351 + 102026828 AGCD01006501;GBDJ01206517;XM_005375125;XM_005375126;XM_005375128;XM_005375129;XM_005375131;XM_013521911;XM_013521921;XM_013521925 XP_005375182;XP_005375183;XP_005375185;XP_005375186;XP_005375188;XP_013377365;XP_013377375;XP_013377379 MODEL 39133252 snrna U4 U4 spliceosomal RNA 8948869 protein-coding Pm20d2 peptidase M20 domain containing 2 ENCODES a protein that exhibits dipeptidase activity (ortholog); identical protein binding (ortholog); INVOLVED IN proteolysis (ortholog); regulation of protein metabolic process (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955411 15932367 15943946 + 102017434 AGCD01011962;GBCQ01101234;GBDI01384473;XM_013510884 XP_013366338 MODEL 8711879 protein-coding Slc49a3 solute carrier family 49 member 3 ASSOCIATED WITH cherubism (ortholog); Mental Retardation, Autosomal Recessive 53 (ortholog); retinitis pigmentosa 40 (ortholog) NW_004955514 289301 295443 - 102007146 AGCD01067006;GBDJ01187158;XM_005408673;XM_013506845;XM_013506846;XR_001231781 XP_005408730;XP_013362299;XP_013362300 MODEL 8768599 protein-coding Slc25a46 solute carrier family 25 member 46 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN autophagy of mitochondrion (ortholog); cerebellar Purkinje cell differentiation (ortholog); cristae formation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 6 (ortholog); Charcot-Marie-Tooth Disease Type 6B (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955418 4316790 4342748 - 102019172 AGCD01018820;AGCD01018821;GBDJ01348816;XM_005382173;XM_013513025 XP_005382230;XP_013368479 MODEL 9067860 protein-coding Piezo1 piezo type mechanosensitive ion channel component 1 (Er blood group) ENCODES a protein that exhibits identical protein binding (ortholog); mechanosensitive monoatomic cation channel activity (ortholog); mechanosensitive monoatomic ion channel activity (ortholog); INVOLVED IN detection of mechanical stimulus (ortholog); monoatomic cation transport (ortholog); positive regulation of cell-cell adhesion mediated by integrin (ortholog); ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 4 (ortholog); congenital hemolytic anemia (ortholog); FOUND IN cuticular plate (ortholog); endoplasmic reticulum (ortholog); plasma membrane (ortholog) NW_004955541 2618167 2655349 - 102027113 AGCD01071419;GBDI01005578;XM_013507959;XM_013507960;XM_013507961;XM_013507962 XP_013363413;XP_013363414;XP_013363415;XP_013363416 MODEL 9030976 protein-coding En2 engrailed homeobox 2 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN central nervous system neuron differentiation (ortholog); dopaminergic neuron differentiation (ortholog); embryonic brain development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); holoprosencephaly 3 (ortholog); FOUND IN fibrillar center (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955491 8422295 8427038 + 102006355 AGCD01060616;GBCQ01057725;XM_013504574 XP_013360028 MODEL 8954288 protein-coding Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN brain development (ortholog); camera-type eye development (ortholog); establishment of protein localization to endoplasmic reticulum membrane (ortholog); ASSOCIATED WITH amenorrhea (ortholog); cryptorchidism (ortholog); genetic disease (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum tubular network (ortholog); excitatory synapse (ortholog) NW_004955440 2551015 2645938 + 102007155 AGCD01036210;AGCD01036211;AGCD01036212;AGCD01036213;AGCD01036214;AGCD01036215;AGCD01036216;GBDI01170428;XM_005390760 XP_005390817 MODEL 8796179 protein-coding Ptrh2 peptidyl-tRNA hydrolase 2 ENCODES a protein that exhibits aminoacyl-tRNA hydrolase activity (ortholog); INVOLVED IN negative regulation of anoikis (ortholog); negative regulation of gene expression (ortholog); positive regulation of anoikis (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 56 (ortholog); cerebellar ataxia (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955451 3370761 3375979 + 102013236 AGCD01043053;GBDF01192078;XM_005393981 XP_005394038 MODEL 8703793 pseudo LOC102011867 josephin-1-like NW_004955417 14417553 14418271 + 102011867 AGCD01018204 MODEL 8836354 protein-coding LOC102015624 olfactory receptor 52M1 NW_004955414 20157339 20158292 + 102015624 AGCD01015358;XM_005380049 XP_005380106 MODEL 8699859 ncrna LOC102017533 uncharacterized LOC102017533 NW_004955452 15825925 15829234 - 102017533 AGCD01044500;GBDF01153842;XR_001236006;XR_001236007 MODEL 8918707 protein-coding Popdc3 popeye domain cAMP effector 3 ENCODES a protein that exhibits cAMP binding (ortholog); INVOLVED IN regulation of membrane potential (ortholog); ASSOCIATED WITH Autosomal Recessive Limb-Girdle Muscular Dystrophy Type 26 (ortholog); FOUND IN membrane (ortholog) NW_004955411 30566988 30573158 - 102030617 AGCD01012259;GBDF01133919;XM_005377823;XM_013510788 XP_005377880;XP_013366242 MODEL 8724002 protein-coding Btbd1 BTB domain containing 1 ENCODES a protein that exhibits cullin family protein binding (ortholog); identical protein binding (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955416 13621343 13657276 + 102011986 AGCD01017229;GBDF01004869;XM_013512487 XP_013367941 MODEL 8751996 protein-coding Serpinb7 serpin family B member 7 INVOLVED IN positive regulation of collagen biosynthetic process (ortholog); positive regulation of glomerular mesangial cell proliferation (ortholog); positive regulation of platelet-derived growth factor production (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); Diabetic Nephropathies (ortholog); familial encephalopathy with neuroserpin inclusion bodies (ortholog) NW_004955402 47599503 47649537 + 102025961 AGCD01001191;AGCD01001192;GBCC01008982;XM_005373035;XM_013511256 XP_005373092;XP_013366710 MODEL 8934260 pseudo LOC102021595 small glutamine-rich tetratricopeptide repeat-containing protein beta pseudogene NW_004955539 1341270 1342180 + 102021595 AGCD01071206 MODEL 8991010 protein-coding Pde1a phosphodiesterase 1A ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); INVOLVED IN cGMP catabolic process (ortholog); regulation of smooth muscle cell apoptotic process (ortholog); regulation of smooth muscle cell proliferation (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Left Ventricular Hypertrophy (ortholog); FOUND IN neuronal cell body (ortholog); sperm flagellum (ortholog) NW_004955403 14906069 15202710 + 102016868 AGCD01002036;AGCD01002037;AGCD01002038;AGCD01002039;AGCD01002040;AGCD01002041;GBDJ01349990;XM_005373347;XM_005373349;XM_005373350;XM_005373351;XM_013512476;XM_013512480;XM_013512485;XM_013512495 XP_005373404;XP_005373406;XP_005373407;XP_005373408;XP_013367930;XP_013367934;XP_013367939;XP_013367949 MODEL 10268167 ncrna LOC106149861 uncharacterized LOC106149861 NW_004955455 581580 586881 - 106149861 AGCD01045562;GBDF01156490;XR_001236309 MODEL 9009192 protein-coding Psmb8 proteasome 20S subunit beta 8 INVOLVED IN antigen processing and presentation (ortholog); fat cell differentiation (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN proteasome complex (ortholog); proteasome core complex (ortholog); spermatoproteasome complex (ortholog) NW_004955437 1500477 1504072 - 102022537 AGCD01034212;GBDJ01021170;XM_005389457 XP_005389514 MODEL 8858528 ncrna LOC102008426 uncharacterized LOC102008426 NW_004955493 5730211 5734272 - 102008426 AGCD01061075;GBCQ01114580;XR_001231278;XR_264085 MODEL 8714588 protein-coding Timm21 translocase of inner mitochondrial membrane 21 INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); protein import into mitochondrial matrix (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrion (ortholog); TIM23 mitochondrial import inner membrane translocase complex (ortholog) NW_004955402 57586651 57598817 + 102009241 AGCD01001501;GBDF01305105;XM_005373066;XR_259107;XR_259108 XP_005373123 MODEL 8802129 pseudo LOC102012667 translationally-controlled tumor protein pseudogene NW_004955502 3634252 3634801 + 102012667 AGCD01064317 MODEL 8899423 protein-coding Parp3 poly(ADP-ribose) polymerase family member 3 ENCODES a protein that exhibits NAD DNA ADP-ribosyltransferase activity (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN DNA ADP-ribosylation (ortholog); double-strand break repair (ortholog); double-strand break repair via nonhomologous end joining (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; FOUND IN intercellular bridge (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955532 3591484 3597549 + 102022324 AGCD01070288;GBDK01070563;XM_005410330;XM_005410331;XR_001232013 XP_005410387;XP_005410388 MODEL 8938738 protein-coding LOC102008016 scavenger receptor cysteine-rich type 1 protein M130-like NW_004955507 6508836 6526813 - 102008016 AGCD01065720;AGCD01065721;AGCD01065722;GBDI01367183;XM_013506149 XP_013361603 MODEL 39133257 snrna U4 U4 spliceosomal RNA 8853421 pseudo LOC102010635 ubiquitin carboxyl-terminal hydrolase 48-like NW_004955441 3586283 3611712 + 102010635 AGCD01036808;AGCD01036809;AGCD01036810;AGCD01036811;AGCD01036812;AGCD01036813 MODEL 8919759 protein-coding Pex5l peroxisomal biogenesis factor 5 like ENCODES a protein that exhibits intracellularly cyclic nucleotide-activated monoatomic cation channel activity (ortholog); peroxisome matrix targeting signal-1 binding (ortholog); peroxisome targeting sequence binding (ortholog); INVOLVED IN maintenance of protein location (ortholog); positive regulation of corticotropin secretion (ortholog); regulated exocytosis (ortholog); ASSOCIATED WITH Currarino syndrome (ortholog); syndromic microphthalmia 3 (ortholog); FOUND IN cell tip (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955420 8924399 9146309 - 102015016 AGCD01020737;AGCD01020738;AGCD01020739;AGCD01020740;GBDK01112864;XM_005383051;XM_005383053;XM_005383054;XM_005383055;XM_005383056;XM_005383058;XM_013513606;XM_013513607;XM_013513608;XM_013513609 XP_005383108;XP_005383110;XP_005383111;XP_005383112;XP_005383113;XP_005383115;XP_013369060;XP_013369061;XP_013369062;XP_013369063 MODEL 9063130 protein-coding Pla2g6 phospholipase A2 group VI ENCODES a protein that exhibits ATP-dependent protein binding (ortholog); calcium-independent phospholipase A2 activity (ortholog); identical protein binding (ortholog); INVOLVED IN antibacterial humoral response (ortholog); cardiolipin acyl-chain remodeling (ortholog); maternal process involved in female pregnancy (ortholog); PARTICIPATES IN angiotensin II signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); autistic disorder (ortholog); Binge Drinking (ortholog); FOUND IN extracellular space (ortholog); microtubule cytoskeleton (ortholog); mitochondrion (ortholog) NW_004955413 24431592 24482229 - 102015394 AGCD01014367;AGCD01014368;GBBH01227983;XM_005379242;XM_005379243 XP_005379299;XP_005379300 MODEL 9061756 protein-coding Ncoa6 nuclear receptor coactivator 6 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin-protein adaptor activity (ortholog); enzyme binding (ortholog); INVOLVED IN brain development (ortholog); DNA damage response (ortholog); DNA-templated transcription initiation (ortholog); PARTICIPATES IN estrogen signaling pathway; glucocorticoid signaling pathway; histone modification pathway; ASSOCIATED WITH breast cancer (ortholog); cardiomyopathy (ortholog); colon cancer (ortholog); FOUND IN cytosol (ortholog); histone methyltransferase complex (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955422 26564535 26639516 + 102019285 AGCD01023292;AGCD01023293;AGCD01023294;GBDJ01115933;XM_005384819;XM_005384820;XM_005384822;XM_005384823;XM_013514087;XM_013514088 XP_005384876;XP_005384877;XP_005384879;XP_005384880;XP_013369541;XP_013369542 MODEL 8832729 protein-coding Tpp1 tripeptidyl peptidase 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); lysophosphatidic acid binding (ortholog); peptidase activity (ortholog); INVOLVED IN bone resorption (ortholog); epithelial cell differentiation (ortholog); lysosomal protein catabolic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Angelman syndrome (ortholog); autosomal recessive spinocerebellar ataxia 7 (ortholog); FOUND IN Golgi apparatus (ortholog); lysosome (ortholog); membrane raft (ortholog) NW_004955414 22324847 22330912 - 102028524 AGCD01015453;GBCE01099114;XM_005380168;XM_005380169 XP_005380225;XP_005380226 MODEL 9034137 protein-coding Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 ENCODES a protein that exhibits enzyme regulator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN establishment of protein localization to endoplasmic reticulum membrane (ortholog); positive regulation of autophagosome assembly (ortholog); positive regulation of endoplasmic reticulum tubular network organization (ortholog); ASSOCIATED WITH amenorrhea (ortholog); cataract (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955520 3411504 3483703 + 102022531 AGCD01068102;AGCD01068103;GBDK01092646;XM_005409267;XM_005409268;XM_005409269 XP_005409324;XP_005409325;XP_005409326 MODEL 10274396 ncrna LOC106147029 uncharacterized LOC106147029 NW_004955512 1991642 2019576 - 106147029 AGCD01066662;AGCD01066663;AGCD01066664;AGCD01066665;GBDK01251512;XR_001231727 MODEL 8714068 protein-coding LOC102011483 tryptase-like NW_004955442 16039127 16040641 + 102011483 AGCD01037891;GBCE01068870;XM_005391590 XP_005391647 MODEL 8804393 protein-coding LOC102018676 protein SPACA7-like NW_004955404 1903444 1922226 + 102018676 AGCD01003236;AGCD01003237;GBDF01001013;XM_005373996;XM_013515729 XP_005374053;XP_013371183 MODEL 8709853 protein-coding LOC102009550 olfactory receptor 5AU1 ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); purine nucleoside phosphorylase deficiency (ortholog) NW_004955550 1921231 1923589 - 102009550 AGCD01072598;XM_013508583 XP_013364037 MODEL 10389657 ncrna LOC106149862 uncharacterized LOC106149862 NW_004955455 16674170 16691430 + 106149862 AGCD01046181;AGCD01046182;AGCD01046183;AGCD01046184;GBDF01154287;XR_001236310;XR_001236311;XR_001236312 MODEL 9015108 protein-coding LOC102006896 apolipoprotein L2-like NW_004955413 22677705 22696823 + 102006896 AGCD01014312;AGCD01014313;GBBH01039748;XM_013511299 XP_013366753 MODEL 9001818 protein-coding LOC102019060 intercellular adhesion molecule 5-like NW_004955478 7958977 7970345 - 102019060 AGCD01056003;GBDK01346127;XM_005402181;XM_005402182;XM_013503152;XM_013503154;XM_013503155;XM_013503156 XP_005402238;XP_005402239;XP_013358606;XP_013358608;XP_013358609;XP_013358610 MODEL 8927178 protein-coding Lias lipoic acid synthetase ENCODES a protein that exhibits lipoate synthase activity (ortholog); INVOLVED IN inflammatory response (ortholog); lipoate biosynthetic process (ortholog); neural tube closure (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hyperglycinemia, Lactic Acidosis, and Seizures (ortholog); pneumonia (ortholog); FOUND IN mitochondrion (ortholog) NW_004955443 7889274 7907560 - 102027352 AGCD01038301;GBCQ01040238;XM_005391982;XM_005391983;XM_005391985 XP_005392039;XP_005392040;XP_005392042 MODEL 8879030 protein-coding Parp4 poly(ADP-ribose) polymerase family member 4 ENCODES a protein that exhibits enzyme binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN inflammatory response (ortholog); protein modification process (ortholog); telomere maintenance via telomerase (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Colonic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955425 20957032 21047971 + 102023718 AGCD01025773;AGCD01025774;AGCD01025775;AGCD01025776;AGCD01025777;AGCD01025778;AGCD01025779;AGCD01025780;AGCD01025781;GBBH01118618;GBDK01069664;XM_013514867 XP_013370321 MODEL 8872761 protein-coding Slc25a47 solute carrier family 25 member 47 ENCODES a protein that exhibits acetyl-CoA transmembrane transporter activity (ortholog); NAD transmembrane transporter activity (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); prostate cancer (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955438 21406270 21413946 + 102005970 AGCD01035542;GBBH01182249;XM_005390431;XM_005390432 XP_005390488;XP_005390489 MODEL 8817975 pseudo LOC102009551 ATP synthase F(0) complex subunit C1, mitochondrial pseudogene NW_004955442 7881091 7881501 + 102009551 AGCD01037628 MODEL 10101774 protein-coding LOC106149863 basic proline-rich protein-like NW_004955455 8399975 8400609 + 106149863 AGCD01045889;GBCQ01189617;GBDI01268100;XM_013520485 XP_013375939 MODEL 8754261 protein-coding Piezo2 piezo type mechanosensitive ion channel component 2 ENCODES a protein that exhibits mechanosensitive monoatomic ion channel activity (ortholog); monoatomic cation channel activity (ortholog); INVOLVED IN detection of mechanical stimulus involved in sensory perception (ortholog); monoatomic cation transport (ortholog); regulation of membrane potential (ortholog); ASSOCIATED WITH cerebral palsy (ortholog); chromosome 18p deletion syndrome (ortholog); distal arthrogryposis (ortholog); FOUND IN cuticular plate (ortholog); neuronal cell body membrane (ortholog); stereocilium (ortholog) NW_004955402 1534619 1873143 + 102018546 AGCD01000059;AGCD01000060;AGCD01000061;GBBH01055058;XM_005372584;XM_013514699;XM_013514720 XP_005372641;XP_013370153;XP_013370174 MODEL 8822301 protein-coding Snx30 sorting nexin family member 30 INVOLVED IN positive regulation of autophagosome assembly (ortholog); protein transport (ortholog); FOUND IN early endosome (ortholog) NW_004955419 14567317 14645442 - 102028419 AGCD01020029;AGCD01020030;AGCD01020031;AGCD01020032;GBDJ01369598;XM_005382931 XP_005382988 MODEL 8766313 ncrna LOC102010640 uncharacterized LOC102010640 NW_004955556 1708260 1721389 - 102010640 AGCD01073200;GBBH01223895;XR_264978 MODEL 8837887 protein-coding Rhov ras homolog family member V ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog) NW_004955416 7741762 7743816 - 102029074 AGCD01017008;GBDI01297240;XM_005381268 XP_005381325 MODEL 8817424 ncrna LOC102015625 uncharacterized LOC102015625 NW_004955472 3335650 3336983 - 102015625 AGCD01053509;GBDF01013258;XR_263549 MODEL 8890208 protein-coding Ptrhd1 peptidyl-tRNA hydrolase domain containing 1 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); NEURODEVELOPMENTAL DISORDER WITH EARLY-ONSET PARKINSONISM AND BEHAVIORAL ABNORMALITIES (ortholog); Parkinsonism (ortholog); FOUND IN mitochondrion (ortholog) NW_004955469 6909627 6913411 - 102030622 AGCD01052399;GBCQ01099830;XM_005400397 XP_005400454 MODEL 8929325 protein-coding Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); p53 binding (ortholog); INVOLVED IN blastocyst development (ortholog); blastocyst hatching (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH agammaglobulinemia 2 (ortholog); atypical teratoid rhabdoid tumor (ortholog); autism spectrum disorder (ortholog); FOUND IN chromatin (ortholog); fibrillar center (ortholog); germ cell nucleus (ortholog) NW_004955455 8420263 8457105 - 102011401 AGCD01045891;AGCD01045892;AGCD01045893;AGCD01045894;GBDF01124014;XM_005396418;XM_005396419;XM_013520440 XP_005396475;XP_005396476;XP_013375894 MODEL 8981012 protein-coding Btbd10 BTB domain containing 10 INVOLVED IN positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955414 28748835 28809735 - 102017326 AGCD01015685;AGCD01015686;AGCD01015687;AGCD01015688;GBDJ01314884;XM_005380310;XM_005380311;XM_005380313 XP_005380367;XP_005380368;XP_005380370 MODEL 9064031 ncrna LOC102021596 uncharacterized LOC102021596 NW_004955541 3430941 3433438 - 102021596 AGCD01071448;GBBH01213905;XR_001232138 MODEL 8944149 protein-coding Wdr33 WD repeat domain 33 PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; ASSOCIATED WITH autosomal dominant thrombophilia due to protein C deficiency (ortholog); FOUND IN fibrillar center (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955459 2740465 2841376 + 102022789 AGCD01048001;AGCD01048002;AGCD01048003;GBDF01081918;XM_005397576;XM_005397577;XM_005397580;XM_005397581;XM_005397582;XM_005397587;XM_005397588;XM_005397589;XM_013521041;XM_013521042;XM_013521044;XM_013521045;XM_013521046 XP_005397633;XP_005397634;XP_005397637;XP_005397638;XP_005397639;XP_005397644;XP_005397645;XP_005397646;XP_013376495;XP_013376496;XP_013376498;XP_013376499;XP_013376500 MODEL 8704858 protein-coding Serpinb8 serpin family B member 8 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN epithelial cell-cell adhesion (ortholog); negative regulation of endopeptidase activity (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); multiple congenital anomalies-hypotonia-seizures syndrome 1 (ortholog); peeling skin syndrome (ortholog); FOUND IN cytosol (ortholog) NW_004955402 47761900 47781281 + 102026819 AGCD01001193;GBDJ01355314;XM_005373037;XM_005373038;XM_005373039;XM_013511271 XP_005373094;XP_005373095;XP_005373096;XP_013366725 MODEL 8850729 protein-coding LOC102010298 liver carboxylesterase 1 NW_004955433 13504228 13538598 - 102010298 AGCD01031693;AGCD01031694;AGCD01031695;GBBH01016309;XM_005388336;XM_013516222 XP_005388393;XP_013371676 MODEL 8946993 pseudo LOC102012669 protein slowmo homolog 2-like NW_004955503 6860185 6860772 + 102012669 AGCD01064772 MODEL 8851986 ncrna LOC102018682 uncharacterized LOC102018682 NW_004955405 39905538 39909717 + 102018682 AGCD01005503;GBDJ01111460;XR_259449 MODEL 8809006 protein-coding LOC102006544 cytochrome b-c1 complex subunit 8 INVOLVED IN cerebellar Purkinje cell layer development (ortholog); hippocampus development (ortholog); hypothalamus development (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); mitochondrial complex III deficiency nuclear type 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex III (ortholog) NW_004955408 4240072 4241342 + 102006544 AGCD01008099;GBDF01003550;XM_005376118;XM_005376119 XP_005376175;XP_005376176 MODEL 8834093 protein-coding Psmb9 proteasome 20S subunit beta 9 ENCODES a protein that exhibits proteasome binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); cellular response to electrical stimulus (ortholog); cellular response to interleukin-1 (ortholog); ASSOCIATED WITH acrodermatitis (ortholog); adult respiratory distress syndrome (ortholog); ankylosing spondylitis (ortholog); FOUND IN cytosol (ortholog); proteasome complex (ortholog); proteasome core complex (ortholog) NW_004955437 1513425 1516164 + 102023191 AGCD01034213;GBBH01002903;GBCB01109043;XM_005389459 XP_005389516 MODEL 8942319 protein-coding Prom2 prominin 2 ENCODES a protein that exhibits cholesterol binding (ortholog); INVOLVED IN negative regulation of caveolin-mediated endocytosis (ortholog); negative regulation of pinocytosis (ortholog); positive regulation of cell projection organization (ortholog); FOUND IN cell projection (ortholog); cell surface (ortholog); cilium (ortholog) NW_004955470 3524900 3538882 + 102012185 AGCD01052703;GBCQ01040977;XM_005400644 XP_005400701 MODEL 9068179 protein-coding Btbd16 BTB domain containing 16 ASSOCIATED WITH 2-Methylbutyryl-CoA Dehydrogenase Deficiency (ortholog); craniosynostosis (ortholog); prostate cancer (ortholog) NW_004955477 560095 627017 + 102019167 AGCD01055492;GBDF01047392;XM_005401934;XM_013503026;XM_013503027 XP_005401991;XP_013358480;XP_013358481 MODEL 8942271 protein-coding Rec8 REC8 meiotic recombination protein INVOLVED IN double-strand break repair via homologous recombination (ortholog); fertilization (ortholog); homologous chromosome pairing at meiosis (ortholog); ASSOCIATED WITH azoospermia (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); FOUND IN condensed chromosome (ortholog); condensed chromosome, centromeric region (ortholog); condensed nuclear chromosome (ortholog) NW_004955409 36223783 36231749 - 102011511 AGCD01010453;GBCE01171312;XM_013510405;XM_013510406 XP_013365859;XP_013365860 MODEL 39131977 snorna SNORD31 Small nucleolar RNA SNORD31 8917941 protein-coding Enah ENAH actin regulator ENCODES a protein that exhibits profilin binding (ortholog); SH3 domain binding (ortholog); WW domain binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); actin polymerization or depolymerization (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); gastrointestinal stromal tumor (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytosol (ortholog); filopodium (ortholog); focal adhesion (ortholog) NW_004955520 310482 374800 + 102030115 AGCD01068015;GBDI01069846;XM_013507016 XP_013362470 MODEL 8909645 protein-coding LOC102011869 butyrophilin subfamily 1 member A1-like NW_004955483 371694 378761 - 102011869 AGCD01057606;AGCD01057607;XM_013503804 XP_013359258 MODEL 8741740 protein-coding LOC102019064 40S ribosomal protein S4, X isoform-like NW_004955484 2005024 2008857 + 102019064 AGCD01058077;GBDF01007579;XM_005403440 XP_005403497 MODEL 10384262 ncrna LOC106149864 uncharacterized LOC106149864 NW_004955406 10217661 10218583 - 106149864 AGCD01005849;XR_001236313 MODEL 8875456 protein-coding Pif1 PIF1 5'-to-3' DNA helicase ENCODES a protein that exhibits 5'-3' DNA helicase activity (ortholog); 5'-3' DNA/RNA helicase activity (ortholog); ATP binding (ortholog); INVOLVED IN negative regulation of telomere maintenance via telomerase (ortholog); protein-DNA-RNA complex disassembly (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Habitual Abortions (ortholog); FOUND IN chromosome, telomeric region (ortholog); mitochondrial nucleoid (ortholog); nucleus (ortholog) NW_004955450 10722570 10729852 + 102009336 AGCD01042634;GBBH01043890;GBBH01043904;XM_005393887 XP_005393944 MODEL 39132289 snorna SNORD33 Small nucleolar RNA Z195/SNORD33/SNORD32 family 8776173 protein-coding Oxa1l OXA1L mitochondrial inner membrane insertase ENCODES a protein that exhibits membrane insertase activity (ortholog); mitochondrial ribosome binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN aerobic respiration (ortholog); mitochondrial protein quality control (ortholog); mitochondrial proton-transporting ATP synthase complex assembly (ortholog); PARTICIPATES IN mitochondrial protein import pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); mitochondrial metabolism disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955409 37513925 37519250 - 102007522 AGCD01010523;AGCD01010524;GBCQ01036845;XM_005377128;XM_013510453 XP_005377185;XP_013365907 MODEL 10201630 ncrna LOC106147030 uncharacterized LOC106147030 NW_004955512 1986326 1991619 - 106147030 AGCD01066662;GBDF01249707;XR_001231728 MODEL 9054031 protein-coding Ncoa7 nuclear receptor coactivator 7 ENCODES a protein that exhibits nuclear receptor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN negative regulation of cellular response to oxidative stress (ortholog); negative regulation of peptidyl-cysteine S-nitrosylation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog) NW_004955436 7110879 7238509 + 102003172 AGCD01033702;AGCD01033703;AGCD01033704;GBCQ01000043;XM_005389157;XM_005389158;XM_005389159;XM_005389160;XM_013516644 XP_005389214;XP_005389215;XP_005389216;XP_005389217;XP_013372098 MODEL 9032373 ncrna LOC102011037 uncharacterized LOC102011037 NW_004955435 7325862 7336787 - 102011037 AGCD01032952;AGCD01032953;AGCD01032954;GBDF01178841;XR_261667 MODEL 9059477 protein-coding Trmo tRNA methyltransferase O ENCODES a protein that exhibits tRNA (L-threonylcarbamoyladenosine(37)-C2) methyltransferase activity (ortholog); INVOLVED IN tRNA methylation (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type II (ortholog); congenital myasthenic syndrome 14 (ortholog) NW_004955419 27553040 27568417 + 102020012 AGCD01020441;GBCQ01059248;XM_013513222;XM_013513223 XP_013368676;XP_013368677 MODEL 8785792 protein-coding Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 INVOLVED IN apoptotic process (ortholog); cellular response to glucose starvation (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); COVID-19 (ortholog); immunodeficiency 12 (ortholog); FOUND IN Bcl-2 family protein complex (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955402 44005517 44010722 + 102015363 AGCD01001085;GBDJ01234034;XM_005373005;XM_005373006 XP_005373062;XP_005373063 MODEL 9016982 protein-coding Timm22 translocase of inner mitochondrial membrane 22 ENCODES a protein that exhibits protein transporter activity (ortholog); INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); PARTICIPATES IN carrier pathway of mitochondrial protein import; ASSOCIATED WITH combined oxidative phosphorylation deficiency 43 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); TIM22 mitochondrial import inner membrane insertion complex (ortholog) NW_004955481 2494943 2501532 + 102029078 AGCD01056876;GBDF01153078;XM_005402649 XP_005402706 MODEL 8755150 protein-coding LOC102024336 uncharacterized LOC102024336 NW_004955418 10489837 10598897 + 102024336 AGCD01018979;AGCD01018980;AGCD01018981;AGCD01018982;XM_005382184 XP_005382241 MODEL 8933480 protein-coding Srp68 signal recognition particle 68 ENCODES a protein that exhibits 7S RNA binding (ortholog); protein domain specific binding (ortholog); ribosome binding (ortholog); INVOLVED IN response to xenobiotic stimulus (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); Craniofacial Abnormalities (ortholog); Severe Congenital Neutropenia 10 (ortholog); FOUND IN cytosol (ortholog); focal adhesion (ortholog); signal recognition particle (ortholog) NW_004955506 6178184 6220255 + 102005824 AGCD01065402;AGCD01065403;GBDF01047361;XM_005407458 XP_005407515 MODEL 39132802 snorna SNORA63 Small nucleolar RNA SNORA63 9029629 protein-coding Slc49a4 solute carrier family 49 member 4 INVOLVED IN pyridoxine transport (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); ovarian cancer (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); lysosomal membrane (ortholog) NW_004955427 22005161 22093700 + 102025270 AGCD01027464;GBBH01172313;GBCB01007670;XM_005386622 XP_005386679 MODEL 8707874 ncrna LOC102010301 uncharacterized LOC102010301 NW_004955524 791217 792333 + 102010301 AGCD01068708;GBDF01013580;XR_001231946 MODEL 8808913 protein-coding LOC102005466 mas-related G-protein coupled receptor member X1 NW_004955476 26643 27677 - 102005466 AGCD01055190;XM_005401897 XP_005401954 MODEL 8864924 protein-coding Psmc1 proteasome 26S subunit, ATPase 1 ENCODES a protein that exhibits TBP-class protein binding (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); neurodevelopmental disorder with poor growth, spastic tetraplegia, and hearing loss (ortholog); prostate cancer (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); proteasome accessory complex (ortholog) NW_004955438 12705328 12721050 + 102012685 AGCD01035267;GBDF01004856;XM_005390281 XP_005390338 MODEL 8993017 protein-coding Pmch pro-melanin concentrating hormone ENCODES a protein that exhibits type 1 melanin-concentrating hormone receptor binding (ortholog); INVOLVED IN drinking behavior (ortholog); feeding behavior (ortholog); lactation (ortholog); ASSOCIATED WITH Insulin Resistance (ortholog); obesity (ortholog); sleeping sickness (ortholog); FOUND IN extracellular space (ortholog); nucleus (ortholog) NW_004955405 37357468 37360695 - 102029697 AGCD01005452;GBBH01147925;XM_005374562 XP_005374619 MODEL 8803226 protein-coding Rtbdn retbindin ENCODES a protein that exhibits riboflavin binding (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); FOUND IN external side of plasma membrane (ortholog); interphotoreceptor matrix (ortholog) NW_004955415 31895446 31899927 - 102023350 AGCD01016700;GBDF01121247;XM_005381033 XP_005381090 MODEL 8986751 protein-coding Por P450 (cytochrome) oxidoreductase ENCODES a protein that exhibits cytochrome-b5 reductase activity, acting on NAD(P)H (ortholog); electron transfer activity (ortholog); enzyme activator activity (ortholog); INVOLVED IN carnitine metabolic process (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); cellular response to gonadotropin stimulus (ortholog); PARTICIPATES IN aldosterone biosynthetic pathway; cortisol biosynthetic pathway; doxorubicin pharmacokinetics pathway; ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); amenorrhea (ortholog); Antley-Bixler syndrome (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog) NW_004955456 14698589 14748520 + 102006877 AGCD01046650;GBDI01012447;XM_005396803;XM_013520565 XP_005396860;XP_013376019 MODEL 8725211 pseudo LOC102005472 CWF19-like protein 2 NW_004955481 1830281 1834787 + 102005472 AGCD01056855 MODEL 8775032 protein-coding Rab3il1 RAB3A interacting protein like 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); identical protein binding (ortholog); kinase binding (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog) NW_004955511 5797528 5810692 + 102006805 AGCD01066585;AGCD01066586;GBDF01005308;XM_005408129;XM_005408130;XM_013506427;XM_013506428;XM_013506429 XP_005408186;XP_005408187;XP_013361881;XP_013361882;XP_013361883 MODEL 8827225 pseudo LOC102011874 cytochrome c-type heme lyase pseudogene NW_004955489 679288 680097 - 102011874 AGCD01059812 MODEL 8969572 pseudo LOC102019065 dnaJ homolog subfamily B member 6-like NW_004955484 9636137 9636807 - 102019065 AGCD01058424 MODEL 8916580 ncrna LOC102008434 uncharacterized LOC102008434 NW_004955424 11874487 11899092 + 102008434 AGCD01024575;AGCD01024576;GBDF01252131;XR_001234207;XR_001234208;XR_001234209;XR_001234210;XR_001234211;XR_001234212;XR_001234213;XR_261052 MODEL 10267276 ncrna LOC106147031 uncharacterized LOC106147031 NW_004955512 2830728 2857157 + 106147031 AGCD01066690;XR_001231730 MODEL 8899846 protein-coding LOC102005475 E3 ubiquitin-protein ligase Topors-like NW_004955419 22119355 22127230 - 102005475 AGCD01020294;AGCD01020295;GBDF01224788;XM_005382789 XP_005382846 MODEL 9038333 protein-coding Ncor1 nuclear receptor corepressor 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (ortholog); cellular response to Thyroglobulin triiodothyronine (ortholog); cerebellum development (ortholog); PARTICIPATES IN aldosterone signaling pathway; androgen signaling pathway; cortisol signaling pathway; ASSOCIATED WITH Acute-Phase Reaction (ortholog); anxiety disorder (ortholog); Breast Cancer, Familial (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955467 1408292 1568539 - 102012299 AGCD01051264;AGCD01051265;AGCD01051266;AGCD01051267;AGCD01051268;GBDF01045203;GBDI01072467;XM_013522047 XP_013377501 MODEL 8981513 protein-coding LOC102003707 vomeronasal type-1 receptor 2-like NW_004955569 1079109 1080002 - 102003707 AGCD01074636;XM_013509364 XP_013364818 MODEL 8764937 protein-coding Pla2g7 phospholipase A2 group VII ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); calcium-independent phospholipase A2 activity (ortholog); phospholipid binding (ortholog); INVOLVED IN lipid oxidation (ortholog); low-density lipoprotein particle remodeling (ortholog); phosphatidylcholine catabolic process (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acute Coronary Syndrome (ortholog); asthma (ortholog); FOUND IN extracellular space (ortholog); high-density lipoprotein particle (ortholog); low-density lipoprotein particle (ortholog) NW_004955437 11534251 11577942 - 102008258 AGCD01034575;AGCD01034576;AGCD01034577;AGCD01034578;GBDJ01386258;XM_005389864;XM_005389865;XM_013517097;XM_013517098;XM_013517099 XP_005389921;XP_005389922;XP_013372551;XP_013372552;XP_013372553 MODEL 8926086 protein-coding Tsc2 TSC complex subunit 2 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); GTPase activator activity (ortholog); Hsp90 protein binding (ortholog); INVOLVED IN anoikis (ortholog); B cell proliferation (ortholog); cell population proliferation (ortholog); PARTICIPATES IN mitogen activated protein kinase signaling pathway; mTOR signaling pathway; the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH Acute Hepatitis (ortholog); acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); FOUND IN caveola (ortholog); cell projection (ortholog); cytoplasm (ortholog) NW_004955442 15178356 15216978 - 102006398 AGCD01037860;GBDI01113122;XM_005391468;XM_005391470;XM_013517657;XM_013517658;XM_013517660;XM_013517661;XM_013517662 XP_005391525;XP_005391527;XP_013373111;XP_013373112;XP_013373114;XP_013373115;XP_013373116 MODEL 8958177 protein-coding LOC102017540 carbonyl reductase [NADPH] 1-like NW_004955407 35259036 35262870 + 102017540 AGCD01007734;AGCD01007735;GBCQ01007849;XM_005375980 XP_005376037 MODEL 8970340 protein-coding Pex6 peroxisomal biogenesis factor 6 ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); protein transporter activity (ortholog); INVOLVED IN peroxisome organization (ortholog); protein import into peroxisome matrix, receptor recycling (ortholog); protein import into peroxisome matrix, translocation (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); Cognitive Dysfunction (ortholog); dystonia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); peroxisomal membrane (ortholog) NW_004955437 8945842 8964870 - 102018981 AGCD01034508;AGCD01034509;AGCD01034510;AGCD01034511;GBBH01063202;GBCE01054076;XM_013516895;XM_013516896 XP_013372349;XP_013372350 MODEL 8931952 protein-coding Slc25a48 solute carrier family 25 member 48 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955408 30775521 30940335 + 102010675 AGCD01008815;AGCD01008816;AGCD01008817;AGCD01008818;GBDF01214459;XM_005376479;XM_005376480;XM_005376481;XM_005376482;XM_005376483;XM_005376484;XM_013506729;XM_013506744 XP_005376536;XP_005376537;XP_005376538;XP_005376539;XP_005376540;XP_005376541;XP_013362183;XP_013362198 MODEL 8758761 ncrna LOC102005477 uncharacterized LOC102005477 NW_004955420 14717038 14721487 + 102005477 AGCD01020954;GBBH01152513;XR_260717 MODEL 9028138 protein-coding Pde1b phosphodiesterase 1B ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); INVOLVED IN cellular response to granulocyte macrophage colony-stimulating factor stimulus (ortholog); cellular response to macrophage colony-stimulating factor stimulus (ortholog); dopamine catabolic process (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH cerebellar ataxia (ortholog); learning disability (ortholog); Parkinsonism (ortholog); FOUND IN cytosol (ortholog); neuronal cell body (ortholog) NW_004955458 1791090 1819261 + 102009692 AGCD01047205;GBDJ01353750;XM_005397232;XM_005397233;XM_005397234 XP_005397289;XP_005397290;XP_005397291 MODEL 9066991 protein-coding LOC102015626 olfactory receptor 10T2-like NW_004955414 23496142 23497107 + 102015626 AGCD01015500;XM_005380517 XP_005380574 MODEL 8712673 protein-coding LOC102010643 leukocyte immunoglobulin-like receptor subfamily A member 3 NW_004955567 1316802 1426452 - 102010643 AGCD01074467;AGCD01074468;AGCD01074469;AGCD01074470;AGCD01074471;AGCD01074472;AGCD01074473;AGCD01074474;AGCD01074475;AGCD01074476;XM_013509260 XP_013364714 MODEL 9044833 protein-coding Enam enamelin ENCODES a protein that exhibits structural constituent of tooth enamel (ortholog); INVOLVED IN ameloblast differentiation (ortholog); amelogenesis (ortholog); odontogenesis of dentin-containing tooth (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 1B (ortholog); amelogenesis imperfecta type 1C (ortholog); FOUND IN extracellular matrix (ortholog) NW_004955447 2331251 2345459 - 102025189 AGCD01040538;JN414625;XM_013518491 AEP18526;XP_013373945 MODEL 8907186 protein-coding Snx31 sorting nexin 31 ASSOCIATED WITH Cohen syndrome (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955417 15779500 15835668 - 102018494 AGCD01018243;GBCE01074372;XM_005381870;XM_013512837;XM_013512838 XP_005381927;XP_013368291;XP_013368292 MODEL 8867141 protein-coding Rasgef1c RasGEF domain family member 1C NW_004955408 482107 515132 + 102008190 AGCD01007922;AGCD01007923;GBBH01010353;XM_013507276 XP_013362730 MODEL 10214383 ncrna LOC106149865 uncharacterized LOC106149865 NW_004955455 8787373 8810442 + 106149865 AGCD01045910;XR_001236315 MODEL 39133163 snrna U4 U4 spliceosomal RNA 9014073 protein-coding LOC102021597 alpha-1-antiproteinase S-like ENCODES a protein that exhibits endopeptidase inhibitor activity (ortholog); identical protein binding (ortholog); protease binding (ortholog); INVOLVED IN negative regulation of serine-type endopeptidase activity (ortholog); response to chromate (ortholog); response to cytokine (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH otitis media; Otitis Media with Effusion; achondrogenesis type IA (ortholog); FOUND IN extracellular space; endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955438 17920200 17929105 + 102021597 AGCD01035456;GBDF01154079;XM_005390393 XP_005390450 MODEL 9060807 pseudo LOC102012670 coiled-coil domain-containing protein 112 pseudogene NW_004955427 341416 343438 - 102012670 AGCD01026827;AGCD01026828 MODEL 8867093 pseudo LOC102006547 lupus La protein pseudogene NW_004955458 8690267 8691504 + 102006547 AGCD01047620 MODEL 8929377 protein-coding Wdr35 WD repeat domain 35 INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to leukemia inhibitory factor (ortholog); cellular response to tumor necrosis factor (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); connective tissue disease (ortholog); cranioectodermal dysplasia (ortholog); FOUND IN axoneme (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955469 2484972 2546562 - 102011643 AGCD01052277;GBBH01005246;XM_005400340 XP_005400397 MODEL 8834159 protein-coding Liat1 ligand of ATE1 ENCODES a protein that exhibits molecular condensate scaffold activity (ortholog); INVOLVED IN membraneless organelle assembly (ortholog); protein arginylation (ortholog); FOUND IN nucleolus (ortholog) NW_004955481 2079002 2083141 + 102025004 AGCD01056863;GBBH01065430;XM_005402635;XM_005402636 XP_005402692;XP_005402693 MODEL 8970101 protein-coding Serpinc1 serpin family C member 1 ENCODES a protein that exhibits heparin binding (ortholog); identical protein binding (ortholog); protease binding (ortholog); INVOLVED IN acute inflammatory response to antigenic stimulus (ortholog); lactation (ortholog); response to nutrient (ortholog); PARTICIPATES IN coagulation cascade pathway; enoxaparin pharmacodynamics pathway; fondaparinux pharmacodynamics pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); Acute Coronary Syndrome (ortholog); Acute Experimental Pancreatitis (ortholog); FOUND IN extracellular space (ortholog) NW_004955406 14024183 14036206 - 102008913 AGCD01005956;GBDK01194209;XM_005374876 XP_005374933 MODEL 8882910 protein-coding LOC102009553 chromosome unknown open reading frame, human C16orf91 INVOLVED IN mitochondrial respiratory chain complex III assembly (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955442 15820684 15821784 + 102009553 AGCD01037879;GBDF01189237;XM_005391583 XP_005391640 MODEL 8919477 protein-coding Prorp protein only RNase P catalytic subunit ENCODES a protein that exhibits ribonuclease P activity (ortholog); INVOLVED IN mitochondrial tRNA 5'-end processing (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); combined oxidative phosphorylation deficiency 54 (ortholog); Developmental Disabilities (ortholog); FOUND IN mitochondrial nucleoid (ortholog); mitochondrial ribonuclease P complex (ortholog); mitochondrion (ortholog) NW_004955409 25791209 25920651 - 102003843 AGCD01010138;AGCD01010139;AGCD01010140;AGCD01010141;GBCB01003766;XM_005376929;XM_005376930;XM_005376931 XP_005376986;XP_005376987;XP_005376988 MODEL 8852583 protein-coding Btbd17 BTB domain containing 17 NW_004955553 1247702 1271777 - 102008771 AGCD01072873;AGCD01072874;AGCD01072875;AGCD01072876;GBCB01111017;XM_005412235;XM_013508637;XM_013508638 XP_005412292;XP_013364091;XP_013364092 MODEL 8936987 pseudo LOC102012671 pescadillo homolog pseudogene NW_004955428 5346972 5362433 + 102012671 AGCD01027708;XR_261310 MODEL 9029789 protein-coding Rhoxf1 Rhox homeobox family member 1 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN androgen receptor signaling pathway (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Danon disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955534 39060 39570 + 102005840 AGCD01070432;XM_005410424 XP_005410481 MODEL 8843090 pseudo LOC102011486 RNA-binding protein 4B pseudogene NW_004955446 4882192 4882609 - 102011486 AGCD01040049 MODEL 8865132 protein-coding Tpp2 tripeptidyl peptidase 2 ENCODES a protein that exhibits aminopeptidase activity (ortholog); identical protein binding (ortholog); peptide binding (ortholog); INVOLVED IN intracellular amino acid homeostasis (ortholog); protein catabolic process (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Developmental Disabilities (ortholog); Evans Syndrome, Immunodeficiency, and Premature Immunosenescence associated with Tripeptidyl-Peptidase II Deficiency (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955404 8465877 8528372 - 102018461 AGCD01003353;GBDF01050175;GBDF01050177;XM_013515923 XP_013371377 MODEL 8785016 protein-coding Reck reversion inducing cysteine rich protein with kazal motifs ENCODES a protein that exhibits coreceptor activity (ortholog); endopeptidase inhibitor activity (ortholog); metalloendopeptidase inhibitor activity (ortholog); INVOLVED IN blood vessel maturation (ortholog); canonical Wnt signaling pathway (ortholog); embryo implantation (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN plasma membrane (ortholog); Wnt signalosome (ortholog) NW_004955472 222261 276869 - 102008717 AGCD01053322;AGCD01053323;GBCE01055236;GBDJ01311384;XM_013523013 XP_013378467 MODEL 9011843 protein-coding Psmc2 proteasome 26S subunit, ATPase 2 ENCODES a protein that exhibits general transcription initiation factor binding (ortholog); proteasome-activating activity (ortholog); TBP-class protein binding (ortholog); INVOLVED IN ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Norman-Roberts syndrome (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); cytosol (ortholog); P-body (ortholog) NW_004955410 8341218 8355515 + 102016988 AGCD01010744;GBDF01009573;XM_005377230 XP_005377287 MODEL 8812655 protein-coding LOC102009554 kallikrein-4-like NW_004955558 1976188 2013876 + 102009554 AGCD01073492;AGCD01073493;AGCD01073494;AGCD01073495;AGCD01073496;XM_013508850 XP_013364304 MODEL 8932661 protein-coding LOC102005483 olfactory receptor 4B1-like NW_004955422 365286 366218 - 102005483 AGCD01022404;XM_005384937 XP_005384994 MODEL 8838233 protein-coding Smarcc1 SWI/SNF related BAF chromatin remodeling complex subunit C1 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); chromatin remodeling (ortholog); insulin receptor signaling pathway (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Animal Disease Models (ortholog); autism spectrum disorder (ortholog); FOUND IN cytoplasm (ortholog); male germ cell nucleus (ortholog); nBAF complex (ortholog) NW_004955420 24594057 24729108 + 102012864 AGCD01021322;AGCD01021323;AGCD01021324;AGCD01021325;AGCD01021326;AGCD01021327;AGCD01021328;AGCD01021329;GBCQ01072893;GBDF01087903;XM_013513379;XM_013513380 XP_013368833;XP_013368834 MODEL 9053423 protein-coding LOC102008017 olfactory receptor 5M3-like NW_004955511 1648423 1649355 - 102008017 AGCD01066377;XM_005407969 XP_005408026 MODEL 8722175 protein-coding Rab3ip RAB3A interacting protein ENCODES a protein that exhibits GTPase binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN cilium assembly (ortholog); negative regulation of filopodium assembly (ortholog); protein localization to organelle (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; FOUND IN centrosome (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955405 10031333 10091438 + 102025971 AGCD01004802;AGCD01004803;AGCD01004804;AGCD01004805;AGCD01004806;AGCD01004807;GBBH01082375;GBDF01009098;XM_013517540 XP_013372994 MODEL 8982295 ncrna LOC102006897 uncharacterized LOC102006897 NW_004955469 7416386 7428166 + 102006897 AGCD01052415;GBDF01307558;XR_263435 MODEL 8904572 protein-coding LOC102011040 olfactory receptor 56-like NW_004955530 191959 192906 + 102011040 AGCD01069832;XM_005410119 XP_005410176 MODEL 9037898 ncrna LOC102024337 uncharacterized LOC102024337 NW_004955418 19468435 19511449 + 102024337 AGCD01019195;GBCQ01141644;XR_260572 MODEL 8718403 ncrna LOC102008436 uncharacterized LOC102008436 NW_004955501 720309 731808 + 102008436 AGCD01064038;GBDF01158739;XR_001231521 MODEL 8967462 protein-coding LOC102011879 spermatogenesis-associated protein 31E1-like NW_004955422 23602412 23608132 + 102011879 AGCD01023197;GBDK01288025;XM_005384703 XP_005384760 MODEL 8789528 protein-coding Timm23b translocase of inner mitochondrial membrane 23 homolog B ASSOCIATED WITH schizophrenia (ortholog); FOUND IN mitochondrion (ortholog) NW_004955556 414345 435182 - 102025949 AGCD01073175;GBDJ01378436;XM_005412558 XP_005412615 MODEL 8812392 protein-coding Snx33 sorting nexin 33 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cleavage furrow formation (ortholog); endocytosis (ortholog); endosomal transport (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); chromosome 15q24 deletion syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955450 2669993 2682503 - 102025744 AGCD01042393;AGCD01042394;GBCQ01127590;XM_005393502 XP_005393559 MODEL 8846680 pseudo LOC102021598 leucine-rich repeat and coiled-coil domain-containing protein 1-like NW_004955439 541151 543625 + 102021598 AGCD01035585 MODEL 8810390 ncrna LOC102006898 uncharacterized LOC102006898 NW_004955414 6093328 6094333 - 102006898 AGCD01014908;GBBH01201308;XR_260154 MODEL 8801248 pseudo LOC102010302 glutathione S-transferase Mu 1-like NW_004955435 13225086 13240501 + 102010302 AGCD01033197;AGCD01033198;AGCD01033199 MODEL 9064179 protein-coding Pts 6-pyruvoyltetrahydropterin synthase ENCODES a protein that exhibits 6-pyruvoyltetrahydropterin synthase activity (ortholog); identical protein binding (ortholog); INVOLVED IN tetrahydrobiopterin biosynthetic process (ortholog); tetrahydrobiopterin metabolic process (ortholog); PARTICIPATES IN dopa responsive dystonia pathway; Segawa syndrome pathway; ASSOCIATED WITH BH4-deficient hyperphenylalaninemia A (ortholog); BH4-deficient hyperphenylalaninemia B (ortholog); chromosome 11 partial duplication syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955412 13880937 13888562 + 102030166 AGCD01012846;AGCD01012847;GBDJ01399101;XM_005378120 XP_005378177 MODEL 8963736 protein-coding Pmel premelanosome protein ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN melanin biosynthetic process (ortholog); melanosome organization (ortholog); positive regulation of melanin biosynthetic process (ortholog); ASSOCIATED WITH coat/hair pigmentation trait (ortholog); melanoma (ortholog); FOUND IN cis-Golgi network membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955458 3544855 3555453 - 102025878 AGCD01047317;AGCD01047318;AGCD01047319;GBBH01103110;XM_005397275;XM_005397277;XM_005397278 XP_005397332;XP_005397334;XP_005397335 MODEL 9015898 protein-coding Serpind1 serpin family D member 1 ASSOCIATED WITH autistic disorder (ortholog); carotid artery thrombosis (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog) NW_004955442 19525411 19537986 - 102025297 AGCD01038066;AGCD01081646;GBDK01094174;XM_005391835 XP_005391892 MODEL 8717373 ncrna LOC102015630 uncharacterized LOC102015630 NW_004955476 6348897 6368660 - 102015630 AGCD01055328;AGCD01055329;AGCD01055330;GBBH01045751;XR_001230802;XR_263624 MODEL 8949108 protein-coding Oxct1 3-oxoacid CoA-transferase 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); succinyl-CoA:3-oxo-acid CoA-transferase activity (ortholog); INVOLVED IN adipose tissue development (ortholog); heart development (ortholog); ketone body catabolic process (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 2 (ortholog); Burns (ortholog); carbohydrate metabolic disorder (ortholog); FOUND IN mitochondrion (ortholog) NW_004955426 25885518 25998187 - 102027088 AGCD01026730;AGCD01026731;AGCD01026732;AGCD01026733;AGCD01026734;GBBH01091031;GBCB01002162;XM_013514992 XP_013370446 MODEL 8786878 protein-coding Tppp2 tubulin polymerization promoting protein family member 2 ENCODES a protein that exhibits tubulin binding (ortholog); INVOLVED IN microtubule bundle formation (ortholog); regulation of flagellated sperm motility (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); purine nucleoside phosphorylase deficiency (ortholog); FOUND IN cytosol (ortholog); sperm flagellum (ortholog) NW_004955550 1779405 1785385 + 102005083 AGCD01072588;GBCE01168156;GBDI01105945;XM_013508575 XP_013364029 MODEL 39132814 snorna SNORA63 Small nucleolar RNA SNORA63 8958681 pseudo LOC102018687 translationally-controlled tumor protein pseudogene NW_004955454 7152912 7153484 - 102018687 AGCD01045283;XM_005396028 MODEL 8827365 protein-coding Porcn porcupine O-acyltransferase ENCODES a protein that exhibits palmitoleoyltransferase activity (ortholog); Wnt-protein binding (ortholog); INVOLVED IN glycoprotein metabolic process (ortholog); protein lipidation (ortholog); protein palmitoleylation (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); Developmental Disabilities (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955543 75870 91575 + 102018334 AGCD01071556;AGCD01071557;GBDK01394558;XM_005411256;XM_005411257;XM_013508161;XM_013508162;XM_013508163;XM_013508164 XP_005411313;XP_005411314;XP_013363615;XP_013363616;XP_013363617;XP_013363618 MODEL 10353063 ncrna LOC106147032 uncharacterized LOC106147032 NW_004955512 4391386 4403239 + 106147032 AGCD01066741;GBDI01232213;XR_001231731 MODEL 8943650 protein-coding LOC102008019 olfactory receptor 10AG1-like NW_004955511 736042 745089 + 102008019 AGCD01066342;XM_005408210 XP_005408267 MODEL 39132811 snorna SNORA63 Small nucleolar RNA SNORA63 8964392 protein-coding LOC102024339 E3 ubiquitin-protein ligase TRIM38-like NW_004955483 1042352 1060507 - 102024339 AGCD01057639;GBBH01115170;XM_005403321;XM_005403322;XM_005403323 XP_005403378;XP_005403379;XP_005403380 MODEL 9027873 pseudo LOC102021601 nuclear receptor coactivator 1-like NW_004955546 2922210 2926579 + 102021601 AGCD01072106 MODEL 39132287 snorna SNORD33 Small nucleolar RNA Z195/SNORD33/SNORD32 family 9059877 protein-coding LOC102003708 UDP-glucuronosyltransferase 2B20-like NW_004955447 4180631 4374845 - 102003708 AGCD01040708;AGCD01040709;AGCD01040710;AGCD01040711;AGCD01040712;AGCD01040713;AGCD01040714;AGCD01040715;GBDF01017425;XM_005392805;XM_005392807;XM_005392808 XP_005392862;XP_005392864;XP_005392865 MODEL 9000067 protein-coding LOC102006902 serine protease inhibitor Kazal-type 9 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN negative regulation of proteolysis (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955415 5971642 5977559 + 102006902 AGCD01016005;GBDJ01000916;XM_005380641;XM_013512380 XP_005380698;XP_013367834 MODEL 10359836 protein-coding Btbd18 BTB domain containing 18 INVOLVED IN male meiosis I (ortholog); piRNA transcription (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN nucleus (ortholog) NW_004955511 2641848 2647679 - 106146243 AGCD01066422;XM_013506440 XP_013361894 MODEL 8952141 ncrna LOC102010644 uncharacterized LOC102010644 NW_004955445 12260606 12264915 + 102010644 AGCD01039746;GBDF01008996;XR_001235639 MODEL 8892327 protein-coding Pex7 peroxisomal biogenesis factor 7 ENCODES a protein that exhibits enzyme binding (ortholog); peroxisome matrix targeting signal-2 binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN endochondral ossification (ortholog); ether lipid biosynthetic process (ortholog); fatty acid beta-oxidation (ortholog); ASSOCIATED WITH connective tissue disease (ortholog); Familial Behcet-Like Autoinflammatory Syndrome (ortholog); fundus dystrophy (ortholog); FOUND IN cytosol (ortholog); peroxisomal matrix (ortholog); peroxisome (ortholog) NW_004955439 71302 138278 - 102019736 AGCD01035579;GBCB01020859;XM_005390459;XM_005390461 XP_005390516;XP_005390518 MODEL 8767103 protein-coding Piga phosphatidylinositol glycan anchor biosynthesis class A INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive congenital ichthyosis 4B (ortholog); Fanconi anemia (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog) NW_004955519 2852605 2865848 + 102017375 AGCD01067942;GBCE01011293;XM_005409170;XM_013507014;XR_001231864 XP_005409227;XP_013362468 MODEL 9014160 protein-coding Pde1c phosphodiesterase 1C ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); INVOLVED IN negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); response to calcium ion (ortholog); sensory perception of smell (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 74 (ortholog); Hypercholesterolemia (ortholog); FOUND IN cilium (ortholog); lysosome (ortholog); neuronal cell body (ortholog) NW_004955410 32790720 33257760 - 102028835 AGCD01011351;AGCD01011352;AGCD01011353;AGCD01011354;AGCD01011355;AGCD01011356;AGCD01011357;AGCD01011358;AGCD01011359;GBBH01160601;GBBH01201304;XM_013510635 XP_013366089 MODEL 8784634 ncrna LOC102023306 uncharacterized LOC102023306 NW_004955563 1507718 1509546 - 102023306 AGCD01074150;GBDF01289828;XR_265017 MODEL 9010383 protein-coding LOC102011487 olfactory receptor 2B6-like NW_004955576 1333991 1334947 + 102011487 AGCD01075372;XM_005413953 XP_005414010 MODEL 8731939 protein-coding Srp72 signal recognition particle 72 ENCODES a protein that exhibits 7S RNA binding (ortholog); ribosome binding (ortholog); signal recognition particle binding (ortholog); ASSOCIATED WITH Bone Marrow Failure Syndrome 1 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); FOUND IN endoplasmic reticulum (ortholog); signal recognition particle (ortholog); signal recognition particle, endoplasmic reticulum targeting (ortholog) NW_004955447 14519978 14552758 - 102028144 AGCD01041011;AGCD01041012;AGCD01041013;AGCD01041014;GBDF01007031;XM_005392872 XP_005392929 MODEL 9015155 ncrna LOC102009555 uncharacterized LOC102009555 NW_004955443 5716273 5723524 + 102009555 AGCD01038243;GBDF01305708;XR_001235476;XR_262177 MODEL 8957701 protein-coding Pttg1 PTTG1 regulator of sister chromatid separation, securin ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (ortholog); heat shock protein binding (ortholog); molecular function activator activity (ortholog); INVOLVED IN chromosome segregation (ortholog); homologous chromosome segregation (ortholog); mitotic sister chromatid cohesion (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Pituitary Neoplasms (ortholog); psoriasis (ortholog); FOUND IN axoneme (ortholog); cilium (ortholog); cytoplasm (ortholog) NW_004955408 14293704 14301357 + 102027493 AGCD01008391;GBDF01007519;XM_005376266;XM_005376267 XP_005376323;XP_005376324 MODEL 8700974 pseudo LOC102005496 probable ATP-dependent RNA helicase DDX41 pseudogene NW_004955433 1844022 1845319 - 102005496 AGCD01031371 MODEL 8883002 protein-coding Slc4a1 solute carrier family 4 member 1 (Diego blood group) ENCODES a protein that exhibits actin binding (ortholog); ankyrin binding (ortholog); bicarbonate transmembrane transporter activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); blood coagulation (ortholog); chloride transmembrane transport (ortholog); ASSOCIATED WITH abetalipoproteinemia (ortholog); ACANTHOCYTOSIS (ortholog); Alkalosis (ortholog); FOUND IN ankyrin-1 complex (ortholog); basolateral plasma membrane (ortholog); cell surface (ortholog) NW_004955451 17318600 17330943 - 102011722 AGCD01043740;AGCD01043741;GBDF01076823;XM_005394528;XM_005394529;XM_013519370 XP_005394585;XP_005394586;XP_013374824 MODEL 39133191 snrna U4 U4 spliceosomal RNA 8957713 protein-coding Oxct2 3-oxoacid CoA-transferase 2 ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN mitochondrion (ortholog); motile cilium (ortholog) NW_004955452 17267971 17270072 - 102029473 AGCD01044547;GBDF01009049;GBDJ01187881;XM_005395266 XP_005395323 MODEL 8913259 protein-coding Tppp3 tubulin polymerization promoting protein family member 3 ENCODES a protein that exhibits tubulin binding (ortholog); INVOLVED IN decidualization (ortholog); embryo implantation (ortholog); microtubule bundle formation (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN microtubule bundle (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955484 9246734 9250293 + 102005264 AGCD01058413;GBDK01012917;XM_005403658 XP_005403715 MODEL 8891610 protein-coding LOC102017542 uncharacterized LOC102017542 NW_004955408 29103923 29110123 - 102017542 AGCD01008738;GBDF01128626;XM_013509707;XM_013509711;XR_001232479 XP_013365161;XP_013365165 MODEL 8936107 protein-coding Timm29 translocase of inner mitochondrial membrane 29 ENCODES a protein that exhibits protein transporter activity (ortholog); INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955495 2005929 2007238 + 102028873 AGCD01061744;AGCD01061745;GBCE01024245;GBCE01024246;XM_013505174 XP_013360628 MODEL 8923705 protein-coding Pla2r1 phospholipase A2 receptor 1 ENCODES a protein that exhibits phospholipase binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN negative regulation of arachidonate secretion (ortholog); negative regulation of phospholipase A2 activity (ortholog); oxidative stress-induced premature senescence (ortholog); ASSOCIATED WITH atypical hemolytic-uremic syndrome (ortholog); autistic disorder (ortholog); kidney disease (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955449 13542458 13653907 + 102028146 AGCD01042138;AGCD01042139;GBCE01188445;XM_005393355 XP_005393412 MODEL 9018778 pseudo LOC102012675 uncharacterized LOC102012675 NW_004955429 6718846 6761193 + 102012675 AGCD01028560;AGCD01028561;AGCD01028562;AGCD01028563;AGCD01028564 MODEL 8967547 protein-coding Wdr36 WD repeat domain 36 INVOLVED IN regulation of axon extension (ortholog); retina homeostasis (ortholog); ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH asthma (ortholog); familial adenomatous polyposis 1 (ortholog); glaucoma (ortholog); FOUND IN nucleolus (ortholog); small-subunit processome (ortholog) NW_004955418 3988073 4023425 - 102017017 AGCD01018806;AGCD01018807;GBDK01006850;XM_005382167;XM_013513044 XP_005382224;XP_013368498 MODEL 8843634 protein-coding Trmt1 tRNA methyltransferase 1 ENCODES a protein that exhibits tRNA (guanine(26)-N2)-dimethyltransferase activity (ortholog); INVOLVED IN tRNA N2-guanine methylation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); autosomal recessive intellectual developmental disorder 68 (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955415 32126630 32136770 - 102029616 AGCD01016710;AGCD01016711;GBDF01119256;XM_013512177 XP_013367631 MODEL 8848442 pseudo LOC102019069 transcription intermediary factor 1-beta pseudogene NW_004955486 2153713 2156471 + 102019069 AGCD01058991;AGCD01058992;XM_005404301 MODEL 8998317 pseudo LOC102024342 60S ribosomal protein L17 pseudogene NW_004955484 3330331 3330824 - 102024342 AGCD01058175 MODEL 8841304 protein-coding Enc1 ectodermal-neural cortex 1 INVOLVED IN negative regulation of translation (ortholog); positive regulation of neuron projection development (ortholog); proteasomal ubiquitin-independent protein catabolic process (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Neurodevelopmental Disorders (ortholog); Sandhoff Disease, Infantile Type (ortholog); FOUND IN chromatin (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955425 26017684 26029262 + 102003987 AGCD01025940;GBDF01251229;XM_005386066 XP_005386123 MODEL 9014452 protein-coding Psmc3 proteasome 26S subunit, ATPase 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN blastocyst development (ortholog); modulation by host of viral transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH cataract (ortholog); congenital disorder of glycosylation type IIc (ortholog); DEAFNESS, CATARACT, IMPAIRED INTELLECTUAL DEVELOPMENT, AND POLYNEUROPATHY (ortholog); FOUND IN nucleus (ortholog); P-body (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955422 837934 843161 + 102021984 AGCD01022437;GBDF01010552;XM_005383972 XP_005384029 MODEL 8825251 protein-coding Parp6 poly(ADP-ribose) polymerase family member 6 ENCODES a protein that exhibits NAD+-protein-aspartate ADP-ribosyltransferase activity (ortholog); NAD+-protein-cysteine ADP-ribosyltransferase activity (ortholog); INVOLVED IN positive regulation of dendrite morphogenesis (ortholog); protein auto-ADP-ribosylation (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955450 4863713 4900509 + 102030258 AGCD01042483;AGCD01042484;AGCD01042485;GBBH01213862;XM_005393612;XM_013518934;XM_013518935;XM_013518936;XM_013518937;XM_013518938;XM_013518939;XM_013518940;XM_013518941;XM_013518942;XM_013518943;XR_001235873 XP_005393669;XP_013374388;XP_013374389;XP_013374390;XP_013374391;XP_013374392;XP_013374393;XP_013374394;XP_013374395;XP_013374396;XP_013374397 MODEL 8701900 ncrna LOC102024345 uncharacterized LOC102024345 NW_004955421 2482992 2490133 - 102024345 AGCD01021630;AGCD01021631;GBDF01236551;XR_260784 MODEL 8880456 protein-coding Rab40b RAB40B, member RAS oncogene family INVOLVED IN cellular detoxification (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); generalized epilepsy (ortholog); FOUND IN nuclear envelope (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955506 480236 509038 + 102006261 AGCD01065228;AGCD01065229;AGCD01065230;GBDI01219730;XM_005407186 XP_005407243 MODEL 8950332 protein-coding Pde2a phosphodiesterase 2A ENCODES a protein that exhibits 3',5'-cGMP-stimulated cyclic-nucleotide phosphodiesterase activity (ortholog); 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); aorta development (ortholog); cardiac septum development (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); Alzheimer's disease (ortholog); Breast Neoplasms (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955414 18765591 18826717 + 102023685 AGCD01015287;GBCQ01072216;XM_013512066 XP_013367520 MODEL 8719457 ncrna LOC102018688 uncharacterized LOC102018688 NW_004955406 40043515 40046054 + 102018688 AGCD01006652;GBCQ01091085;XR_259528 MODEL 9011229 protein-coding Lif LIF interleukin 6 family cytokine ENCODES a protein that exhibits cytokine activity (ortholog); growth factor activity (ortholog); leukemia inhibitory factor receptor binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); astrocyte differentiation (ortholog); blood vessel remodeling (ortholog); ASSOCIATED WITH brain ischemia (ortholog); Cardiomegaly (ortholog); colon cancer (ortholog); FOUND IN cytosol (ortholog); extracellular space (ortholog) NW_004955455 4489515 4505439 - 102016978 AGCD01045676;AGCD01045677;GBBH01132054;XM_005396245;XM_005396246;XM_005396248;XM_013520369 XP_005396302;XP_005396303;XP_005396305;XP_013375823 MODEL 8802107 pseudo LOC102011882 thioredoxin pseudogene NW_004955494 7209430 7210242 - 102011882 AGCD01061546 MODEL 8961227 protein-coding Ncor2 nuclear receptor corepressor 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); enzyme activator activity (ortholog); INVOLVED IN cell proliferation in forebrain (ortholog); cerebellum development (ortholog); epidermis development (ortholog); PARTICIPATES IN aldosterone signaling pathway; altered androgen signaling pathway; androgen signaling pathway; ASSOCIATED WITH breast cancer (ortholog); endometrial carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN chromatin (ortholog); histone deacetylase complex (ortholog); nuclear body (ortholog) NW_004955482 4927482 5031848 + 102010586 AGCD01057317;AGCD01057318;GBDJ01001939;XM_005403008;XM_013503630;XM_013503631;XM_013503632;XM_013503633;XM_013503634;XM_013503635;XM_013503636;XM_013503637;XM_013503638 XP_005403065;XP_013359084;XP_013359085;XP_013359086;XP_013359087;XP_013359088;XP_013359089;XP_013359090;XP_013359091;XP_013359092 MODEL 8942972 protein-coding Pttg1ip PTTG1 interacting protein ENCODES a protein that exhibits p53 binding (ortholog); INVOLVED IN negative regulation of DNA damage response, signal transduction by p53 class mediator (ortholog); negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); positive regulation of protein ubiquitination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autoimmune polyendocrine syndrome type 1 (ortholog); cataract 9 multiple types (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 41753855 41769107 - 102010126 AGCD01007879;AGCD01007880;AGCD01007881;GBCE01004518;GBDI01017833;XM_005375903 XP_005375960 MODEL 8892486 protein-coding Postn periostin ENCODES a protein that exhibits heparin binding (ortholog); metal ion binding (ortholog); INVOLVED IN bone regeneration (ortholog); cell adhesion (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); aggressive periodontitis (ortholog); aspirin-induced respiratory disease (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular matrix (ortholog); extracellular space (ortholog) NW_004955431 8510646 8544901 + 102022213 AGCD01030127;AGCD01030128;GBDI01138507;XM_005387655;XM_005387656;XM_005387657;XM_005387658;XM_005387659;XM_005387661;XM_013515886 XP_005387712;XP_005387713;XP_005387714;XP_005387715;XP_005387716;XP_005387718;XP_013371340 MODEL 8786325 protein-coding Tpr translocated promoter region, nuclear basket protein ENCODES a protein that exhibits chromatin binding (ortholog); dynein complex binding (ortholog); heat shock protein binding (ortholog); INVOLVED IN cellular response to heat (ortholog); cellular response to interferon-alpha (ortholog); mitotic spindle assembly checkpoint signaling (ortholog); ASSOCIATED WITH Autosomal Recessive Intellectual Developmental Disorder 79 (ortholog); camptodactyly-arthropathy-coxa vara-pericarditis syndrome (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic dynein complex (ortholog); kinetochore (ortholog) NW_004955406 24742525 24805989 - 102011731 AGCD01006207;GBBH01166944;XM_005375082;XM_005375083 XP_005375139;XP_005375140 MODEL 8882660 protein-coding Rtca RNA 3'-terminal phosphate cyclase ENCODES a protein that exhibits RNA-3'-phosphate cyclase activity (ortholog); INVOLVED IN negative regulation of optical nerve axon regeneration (ortholog); ASSOCIATED WITH maple syrup urine disease (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955435 5019654 5041611 + 102005077 AGCD01032871;AGCD01032872;AGCD01032873;GBBH01092988;XM_005388796 XP_005388853 MODEL 8913573 protein-coding Recql RecQ like helicase ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); DNA helicase activity (ortholog); DNA/DNA annealing activity (ortholog); INVOLVED IN replication fork processing (ortholog); ASSOCIATED WITH Breast Cancer, Familial (ortholog); Breast Neoplasms (ortholog); cancer (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955413 17115443 17148708 - 102017214 AGCD01014129;AGCD01014130;GBCQ01179121;XM_005379058;XM_013511493 XP_005379115;XP_013366947 MODEL 8987757 protein-coding Timm44 translocase of inner mitochondrial membrane 44 ENCODES a protein that exhibits enzyme binding (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN cardiac muscle cell differentiation (ortholog); intracellular protein transport (ortholog); response to 3,3',5-triiodo-L-thyronine (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH diabetic retinopathy (ortholog); Experimental Diabetes Mellitus (ortholog); familial hemophagocytic lymphohistiocytosis 5 (ortholog); FOUND IN fibrillar center (ortholog); mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog) NW_004955563 1328374 1342011 + 102018138 AGCD01074140;AGCD01074141;GBDJ01080690;XM_005413138 XP_005413195 MODEL 39131456 protein-coding RASGEF1C RasGEF domain family member 1C 8770844 protein-coding Tpra1 transmembrane protein adipocyte associated 1 INVOLVED IN embryonic cleavage (ortholog); negative regulation of mitotic cell cycle phase transition (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); immunodeficiency 21 (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN plasma membrane (ortholog) NW_004955429 16032247 16041793 + 102029771 AGCD01028826;GBBH01192980;XM_005387055;XM_005387056;XM_013515540 XP_005387112;XP_005387113;XP_013370994 MODEL 9065083 ncrna LOC102006548 uncharacterized LOC102006548 NW_004955460 7441771 7442931 + 102006548 AGCD01048482;GBDF01093828;XR_263038 MODEL 8847787 protein-coding Smarcc2 SWI/SNF related BAF chromatin remodeling complex subunit C2 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH Coffin-Siris syndrome 1 (ortholog); Coffin-Siris syndrome 8 (ortholog); genetic disease (ortholog); FOUND IN nBAF complex (ortholog); npBAF complex (ortholog); nucleoplasm (ortholog) NW_004955458 3764823 3787159 - 102027049 AGCD01047344;AGCD01047345;GBCB01038863;GBDK01076811;XM_013520814;XM_013520815;XM_013520816;XM_013520817;XM_013520818;XM_013520820;XM_013520821;XM_013520822 XP_013376268;XP_013376269;XP_013376270;XP_013376271;XP_013376272;XP_013376274;XP_013376275;XP_013376276 MODEL 8714840 protein-coding Timm50 translocase of inner mitochondrial membrane 50 ENCODES a protein that exhibits cysteine-type endopeptidase activator activity (ortholog); interleukin-2 receptor binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN mitochondrial membrane organization (ortholog); protein dephosphorylation (ortholog); protein import into mitochondrial matrix (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH 3-methylglutaconic aciduria type 9 (ortholog); Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); mitochondrial inner membrane (ortholog) NW_004955468 85681 94300 - 102020644 AGCD01051681;GBDF01010510;XM_005399767 XP_005399824 MODEL 9012764 protein-coding Psmc3ip PSMC3 interacting protein ENCODES a protein that exhibits DNA binding domain binding (ortholog); identical protein binding (ortholog); nuclear estrogen receptor binding (ortholog); INVOLVED IN androgen receptor signaling pathway (ortholog); estrogen receptor signaling pathway (ortholog); homologous chromosome pairing at meiosis (ortholog); ASSOCIATED WITH mucopolysaccharidosis type IIIB (ortholog); ovarian dysgenesis 3 (ortholog); Prostatic Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955451 16464233 16467896 - 102020742 AGCD01043679;GBDF01020452;XM_005394467;XM_013519148 XP_005394524;XP_013374602 MODEL 8963159 protein-coding Srp9 signal recognition particle 9 PARTICIPATES IN interleukin-3 signaling pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955520 163713 168507 - 102004745 AGCD01068009;GBCE01002526;XM_005409214 XP_005409271 MODEL 8903192 pseudo LOC102024346 UPF0538 protein C2orf76 homolog pseudogene NW_004955489 2537117 2537685 + 102024346 AGCD01059871;XM_005404539 MODEL 39133086 snrna U4 U4 spliceosomal RNA 10143408 ncrna LOC106147033 uncharacterized LOC106147033 NW_004955512 2805902 2815137 + 106147033 AGCD01066690;GBDK01124197;XR_001231732 MODEL 8992440 protein-coding LOC102010304 protein LEG1 homolog NW_004955436 8564756 8573875 + 102010304 AGCD01033743;GBBH01076388;XM_005389173 XP_005389230 MODEL 8783802 ncrna LOC102021603 uncharacterized LOC102021603 NW_004955442 5816330 5828896 + 102021603 AGCD01037570;XR_262117 MODEL 8971967 protein-coding Oxgr1 oxoglutarate receptor 1 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Calcium Oxalate Nephrolithiasis 2 with Nephrocalcinosis (ortholog); holoprosencephaly 5 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955404 13337607 13344789 + 102021511 AGCD01003482;GBCQ01086326;XM_005374095;XM_013517055 XP_005374152;XP_013372509 MODEL 8966085 protein-coding LOC102012676 guanylate cyclase soluble subunit beta-2-like NW_004955431 4387868 4457281 - 102012676 AGCD01029996;AGCD01029997;AGCD01029998;AGCD01029999;XM_013515724 XP_013371178 MODEL 39131948 snorna SNORD34 Small nucleolar RNA SNORD34 10222039 protein-coding Ncr3 natural cytotoxicity triggering receptor 3 ENCODES a protein that exhibits identical protein binding (ortholog); immune receptor activity (ortholog); INVOLVED IN immune response-activating cell surface receptor signaling pathway (ortholog); natural killer cell activation (ortholog); NK T cell activation (ortholog); ASSOCIATED WITH acquired immunodeficiency syndrome (ortholog); Chronic Hepatitis C (ortholog); COVID-19 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955437 130360 134751 - 106149106 AGCD01034102;AGCD01034103;AGCD01034104;GBBH01150590;GBCE01101721;XM_013516929 XP_013372383 MODEL 8868661 protein-coding Btbd19 BTB domain containing 19 ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955464 13401388 13416924 - 102008074 AGCD01050274;AGCD01050275;GBDJ01381390;XM_005398728;XM_005398729;XM_005398730;XM_013521629 XP_005398785;XP_005398786;XP_005398787;XP_013377083 MODEL 8914486 protein-coding Serpine1 serpin family E member 1 ENCODES a protein that exhibits endopeptidase inhibitor activity (ortholog); protease binding (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to aldosterone (ortholog); cellular response to angiotensin (ortholog); PARTICIPATES IN fibrinolysis pathway; hypoxia inducible factor pathway; oxygen homeostasis pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acquired Protein C Deficiency (ortholog); Acute Lung Injury (ortholog); FOUND IN chromaffin granule (ortholog); collagen-containing extracellular matrix (ortholog); extracellular exosome (ortholog) NW_004955456 16147523 16157040 - 102027492 AGCD01046692;GBBH01203227;XM_005396870 XP_005396927 MODEL 8810455 protein-coding LOC102010649 zinc finger protein 134 NW_004955584 442199 447345 + 102010649 AGCD01075941;GBDF01124692;XM_005414366;XM_013509874;XM_013509875 XP_005414423;XP_013365328;XP_013365329 MODEL 8892407 protein-coding Pigb phosphatidylinositol glycan anchor biosynthesis class B ENCODES a protein that exhibits alpha-1,2-mannosyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); developmental and epileptic encephalopathy 80 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955409 562575 577082 - 102020890 AGCD01009155;GBCE01000716;GBDI01179911;XM_013510265 XP_013365719 MODEL 9012110 ncrna LOC102023307 uncharacterized LOC102023307 NW_004955564 301339 308439 + 102023307 AGCD01074198;GBCQ01153494;XR_001232385;XR_001232386 MODEL 8999415 protein-coding Endod1 endonuclease domain containing 1 ASSOCIATED WITH ataxia telangiectasia (ortholog); intellectual disability (ortholog) NW_004955412 61280 65352 + 102009816 AGCD01012480;GBDJ01177795;XM_013511207 XP_013366661 MODEL 8995125 protein-coding Pfas phosphoribosylformylglycinamidine synthase ENCODES a protein that exhibits phosphoribosylformylglycinamidine synthase activity (ortholog); INVOLVED IN 'de novo' AMP biosynthetic process (ortholog); 'de novo' IMP biosynthetic process (ortholog); 'de novo' XMP biosynthetic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH Autosomal Recessive Dyskeratosis Congenita (ortholog); Cerebroretinal Microangiopathy with Calcifications and Cysts 1 (ortholog); colon adenocarcinoma (ortholog) NW_004955467 8640044 8660950 - 102020102 AGCD01051464;AGCD01051465;GBDJ01388665;XM_005399417;XM_005399420;XM_005399421;XM_013522183;XM_013522184 XP_005399474;XP_005399477;XP_005399478;XP_013377637;XP_013377638 MODEL 9014307 pseudo LOC102012678 60S ribosomal protein L26 pseudogene NW_004955523 522319 523767 - 102012678 AGCD01068463 MODEL 8860755 ncrna LOC102011050 uncharacterized LOC102011050 NW_004955440 19071638 19074811 - 102011050 AGCD01036626;GBDF01013047;XR_262047 MODEL 150537116 snorna SNORA65 small nucleolar RNA, H/ACA box 65 8999277 protein-coding Rhpn1 rhophilin Rho GTPase binding protein 1 INVOLVED IN focal adhesion assembly (ortholog); glomerular filtration (ortholog); kidney development (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); FOUND IN cell periphery (ortholog); plasma membrane (ortholog) NW_004955454 2086054 2099018 + 102029823 AGCD01045009;GBDF01155289;XM_005395768 XP_005395825 MODEL 8720813 protein-coding Pros1 protein S ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN liver development (ortholog); negative regulation of coagulation (ortholog); positive regulation of phagocytosis (ortholog); PARTICIPATES IN protein C anticoagulant pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); autosomal dominant thrombophilia due to protein S deficiency (ortholog); autosomal recessive thrombophilia due to protein S deficiency (ortholog); FOUND IN extracellular space (ortholog); protein-containing complex (ortholog) NW_004955407 3514900 3566165 + 102002997 AGCD01006863;GBCQ01040731;GBDF01157496;XM_013503591 XP_013359045 MODEL 8954718 protein-coding Slc4a10 solute carrier family 4 member 10 ENCODES a protein that exhibits sodium,bicarbonate:chloride antiporter activity (ortholog); sodium:bicarbonate symporter activity (ortholog); INVOLVED IN brain morphogenesis (ortholog); locomotory exploration behavior (ortholog); multicellular organism growth (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cognitive disorder (ortholog); epilepsy (ortholog); FOUND IN apical dendrite (ortholog); apical plasma membrane (ortholog); axon terminus (ortholog) NW_004955449 11879070 12159981 - 102019870 AGCD01042094;AGCD01042095;AGCD01042096;AGCD01042097;AGCD01042098;AGCD01042099;AGCD01042100;AGCD01042101;AGCD01042102;AGCD01042103;AGCD01042104;AGCD01042105;AGCD01042106;GBBH01068682;XM_005393323;XM_005393324;XM_005393329 XP_005393380;XP_005393381;XP_005393386 MODEL 8793209 protein-coding Pde3a phosphodiesterase 3A ENCODES a protein that exhibits 3',5'-cGMP-inhibited cyclic-nucleotide phosphodiesterase activity (ortholog); 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); cellular response to cGMP (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); hypertension and brachydactyly syndrome (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog) NW_004955413 16340827 16642731 + 102013492 AGCD01014105;AGCD01014106;AGCD01014107;AGCD01014108;GBBH01170592;XM_005379045 XP_005379102 MODEL 8850626 ncrna LOC102006910 uncharacterized LOC102006910 NW_004955417 25248421 25254129 - 102006910 AGCD01018475;XR_260493 MODEL 8856621 protein-coding Pmepa1 prostate transmembrane protein, androgen induced 1 ENCODES a protein that exhibits protein sequestering activity (ortholog); R-SMAD binding (ortholog); WW domain binding (ortholog); INVOLVED IN negative regulation of SMAD protein signal transduction (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); ASSOCIATED WITH breast cancer (ortholog); Experimental Liver Cirrhosis (ortholog); gastric adenocarcinoma (ortholog); FOUND IN early endosome membrane (ortholog); endosome membrane (ortholog); Golgi membrane (ortholog) NW_004955445 1837084 1847214 + 102030250 AGCD01039346;GBCE01055931;XM_005392247 XP_005392304 MODEL 8998142 protein-coding Ptx3 pentraxin 3 ENCODES a protein that exhibits (1->3)-beta-D-glucan binding (ortholog); complement component C1q complex binding (ortholog); identical protein binding (ortholog); INVOLVED IN extracellular matrix organization (ortholog); host-mediated suppression of symbiont invasion (ortholog); innate immune response (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); cystic fibrosis (ortholog); Diabetic Foot (ortholog); FOUND IN extracellular matrix (ortholog); extracellular space (ortholog) NW_004955448 8366795 8373010 + 102016862 AGCD01041442;AGCD01041443;GBBH01137479;GBCQ01115782;XM_013518628 XP_013374082 MODEL 39132713 snrna U4 U4 spliceosomal RNA 9050685 protein-coding Wdr37 WD repeat domain 37 INVOLVED IN corpus callosum development (ortholog); lymphocyte homeostasis (ortholog); ASSOCIATED WITH amenorrhea (ortholog); cerebellar hypoplasia (ortholog); coloboma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955421 30097046 30161762 - 102023043 AGCD01022380;AGCD01022381;AGCD01022382;GBDF01221568;XM_005383910;XM_013513754;XM_013513755;XM_013513756;XM_013513758;XM_013513759 XP_005383967;XP_013369208;XP_013369209;XP_013369210;XP_013369212;XP_013369213 MODEL 8706847 pseudo LOC102019085 40S ribosomal protein S11-like NW_004955503 5228501 5228977 - 102019085 AGCD01064700 MODEL 9055329 ncrna LOC102021610 uncharacterized LOC102021610 NW_004955447 10979457 11045604 - 102021610 AGCD01040895;AGCD01040896;AGCD01040897;AGCD01040898;AGCD01040899;GBCB01088708;XR_262419 MODEL 8809166 protein-coding Slc25a5 solute carrier family 25 member 5 ENCODES a protein that exhibits adenine nucleotide transmembrane transporter activity (ortholog); ATP:ADP antiporter activity (ortholog); oxidative phosphorylation uncoupler activity (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); adenine nucleotide transport (ortholog); B cell differentiation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN membrane (ortholog); membrane raft (ortholog); mitochondrial inner membrane (ortholog) NW_004955534 497518 500309 - 102012240 AGCD01070456;GBBH01091214;XM_005410445 XP_005410502 MODEL 9034625 protein-coding Recql4 RecQ like helicase 4 ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); bubble DNA binding (ortholog); DNA/DNA annealing activity (ortholog); INVOLVED IN DNA replication (ortholog); negative regulation of sister chromatid cohesion (ortholog); pigmentation (ortholog); ASSOCIATED WITH B-lymphoblastic leukemia/lymphoma with ETV6-RUNX1 (ortholog); Baller-Gerold syndrome (ortholog); breast cancer (ortholog); FOUND IN chromosome, telomeric region (ortholog); nucleoplasm (ortholog) NW_004955454 3136097 3142525 - 102012055 AGCD01045057;GBDF01177422;XM_005395909;XM_005395911;XM_005395913 XP_005395966;XP_005395968;XP_005395970 MODEL 9036278 protein-coding Tprg1 tumor protein p63 regulated 1 ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cytoplasm (ortholog) NW_004955420 18632583 18853032 - 102019278 AGCD01021047;AGCD01021048;AGCD01021049;AGCD01021050;AGCD01021051;GBCC01000366;XM_005383239;XM_013513625;XM_013513626 XP_005383296;XP_013369079;XP_013369080 MODEL 8913281 pseudo LOC102006549 E3 ISG15--protein ligase HERC5-like NW_004955409 19021413 19028218 + 102006549 AGCD01009854 MODEL 8824120 ncrna LOC102012680 uncharacterized LOC102012680 NW_004955435 7947806 7951442 - 102012680 AGCD01032982;GBDF01049854;XR_001234875;XR_001234876;XR_001234877 MODEL 8803225 pseudo LOC102023310 ubiquitin-conjugating enzyme E2 D3 pseudogene NW_004955448 11211323 11211788 - 102023310 AGCD01041517 MODEL 8774162 protein-coding Endog endonuclease G ENCODES a protein that exhibits DNA endonuclease activity (ortholog); DNA nuclease activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN apoptotic DNA fragmentation (ortholog); cellular response to calcium ion (ortholog); cellular response to glucose stimulus (ortholog); ASSOCIATED WITH brain ischemia (ortholog); Chemical and Drug Induced Liver Injury (ortholog); congestive heart failure (ortholog); FOUND IN mitochondrion (ortholog); perikaryon (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955570 1200461 1203566 + 102025406 AGCD01074798;AGCD01074799;GBBH01228917;XM_005413641 XP_005413698 MODEL 8868713 protein-coding Pfdn1 prefoldin subunit 1 ENCODES a protein that exhibits amyloid-beta binding (ortholog); protein folding chaperone (ortholog); unfolded protein binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); B cell activation (ortholog); cerebellum development (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN centrosome (ortholog); prefoldin complex (ortholog) NW_004955418 351078 414292 + 102009501 AGCD01018672;AGCD01018673;AGCD01018674;AGCD01018675;GBDF01005515;XM_005382045;XM_013512929;XR_001233501 XP_005382102;XP_013368383 MODEL 8974897 protein-coding Lifr LIF receptor subunit alpha ENCODES a protein that exhibits ciliary neurotrophic factor receptor activity (ortholog); ciliary neurotrophic factor receptor binding (ortholog); cytokine binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); ciliary neurotrophic factor-mediated signaling pathway (ortholog); cytokine-mediated signaling pathway (ortholog); ASSOCIATED WITH CAKUT (ortholog); connective tissue disease (ortholog); Developmental Disabilities (ortholog); FOUND IN receptor complex (ortholog) NW_004955426 23045867 23093694 - 102019413 AGCD01026633;AGCD01026634;GBCQ01002072;XM_013514985;XM_013514986 XP_013370439;XP_013370440 MODEL 8801401 protein-coding LOC102017543 olfactory receptor 10P1-like NW_004955458 3094534 3095475 + 102017543 AGCD01047270;XM_005397250 XP_005397307 MODEL 10230984 ncrna LOC106149866 uncharacterized LOC106149866 NW_004955456 12437375 12438935 - 106149866 AGCD01046567;GBBH01182243;XR_001236316 MODEL 8867283 ncrna LOC102015631 uncharacterized LOC102015631 NW_004955416 19735665 19997148 + 102015631 AGCD01017439;AGCD01017440;AGCD01017441;AGCD01017442;AGCD01017443;AGCD01017444;AGCD01017445;AGCD01017446;AGCD01017447;AGCD01017448;GBCE01037520;XR_001233355;XR_001233356;XR_001233357;XR_001233358;XR_001233359;XR_001233360;XR_001233361;XR_001233362;XR_001233363;XR_001233364 MODEL 8853253 ncrna LOC102003710 uncharacterized LOC102003710 NW_004955575 880017 890569 + 102003710 AGCD01075230;GBDF01020002;XR_265070 MODEL 8950745 pseudo LOC102010305 protein archease pseudogene NW_004955532 1134983 1135508 + 102010305 AGCD01070166 MODEL 8705185 protein-coding Pot1 protection of telomeres 1 ENCODES a protein that exhibits 8-hydroxy-2'-deoxyguanosine DNA binding (ortholog); DEAD/H-box RNA helicase binding (ortholog); G-rich single-stranded DNA binding (ortholog); INVOLVED IN chromosome organization (ortholog); establishment of protein localization to telomere (ortholog); negative regulation of telomere maintenance via telomerase (ortholog); ASSOCIATED WITH aplastic anemia (ortholog); Cerebroretinal Microangiopathy with Calcifications and Cysts 3 (ortholog); cholecystitis (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear telomere cap complex (ortholog); nucleoplasm (ortholog) NW_004955479 6140599 6230512 - 102018183 AGCD01056377;AGCD01056378;AGCD01056379;GBDF01156854;XM_005402344;XM_005402345;XM_005402346;XM_013503293;XR_001230883 XP_005402401;XP_005402402;XP_005402403;XP_013358747 MODEL 8705104 ncrna LOC102011493 uncharacterized LOC102011493 NW_004955403 2475409 2479214 + 102011493 AGCD01001736;GBDF01280925;XR_001234362 MODEL 8777023 protein-coding Tsc22d1 TSC22 domain family member 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of hematopoietic stem cell proliferation (ortholog); negative regulation of programmed cell death (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955518 2322566 2451519 - 102010937 AGCD01067775;AGCD01067776;AGCD01067777;AGCD01067778;GBDF01010659;GBDF01010660;XM_005409075 XP_005409132 MODEL 8979055 protein-coding Oxld1 oxidoreductase like domain containing 1 FOUND IN mitochondrion (ortholog) NW_004955506 1433754 1435141 + 102030553 AGCD01065263;GBDF01111330;XM_005407268 XP_005407325 MODEL 8972184 protein-coding LOC102006911 zinc finger protein 14-like NW_004955417 31668874 31705932 - 102006911 AGCD01018660;AGCD01018661;AGCD01018662;GBCE01006196;XM_005381977;XM_013512776 XP_005382034;XP_013368230 MODEL 8957090 ncrna LOC102005498 uncharacterized LOC102005498 NW_004955522 4121118 4127681 - 102005498 AGCD01068413;GBDF01226154;XR_001231895;XR_264630 MODEL 9031881 pseudo LOC102019090 60S ribosomal protein L5 pseudogene NW_004955428 18851546 18852411 - 102019090 AGCD01028072 MODEL 8979075 protein-coding LOC102003711 protein FAM170A-like NW_004955582 198318 205621 + 102003711 AGCD01075748;AGCD01075749;GBDF01050789;XM_005414281;XM_005414282 XP_005414338;XP_005414339 MODEL 8982690 protein-coding Rab40c RAB40C, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog); FOUND IN Golgi apparatus (ortholog); lipid droplet (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955442 16577843 16614132 - 102024512 AGCD01037901;AGCD01037902;AGCD01037903;GBCE01155373;GBCQ01129291;XM_005391634 XP_005391691 MODEL 8889757 protein-coding Smarcd1 SWI/SNF related BAF chromatin remodeling complex subunit D1 ENCODES a protein that exhibits chromatin binding (ortholog); molecular adaptor activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN cellular response to fatty acid (ortholog); chromatin remodeling (ortholog); nucleosome disassembly (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH alopecia (ortholog); Coffin-Siris syndrome 11 (ortholog); familial hyperlipidemia (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nBAF complex (ortholog); npBAF complex (ortholog) NW_004955547 659919 673637 + 102012130 AGCD01072171;GBCQ01017115;XM_005411865;XM_005411867;XM_005411869;XM_013508482 XP_005411922;XP_005411924;XP_005411926;XP_013363936 MODEL 8774111 protein-coding Serpine2 serpin family E member 2 ENCODES a protein that exhibits glycosaminoglycan binding (ortholog); heparin binding (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN blood coagulation (ortholog); cerebellar granular layer morphogenesis (ortholog); dense core granule biogenesis (ortholog); PARTICIPATES IN fibrinolysis pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); brain edema (ortholog); hypertension (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955453 10049822 10076155 + 102019660 AGCD01044782;GBDF01187903;XM_005395484 XP_005395541 MODEL 9052062 protein-coding Rasgrf1 Ras protein specific guanine nucleotide releasing factor 1 ENCODES a protein that exhibits glutamate receptor binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); receptor tyrosine kinase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); cellular response to antibiotic (ortholog); cellular response to insulin stimulus (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Drug-Induced Dyskinesia (ortholog); FOUND IN apical dendrite (ortholog); apicolateral plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955533 69736 167626 - 102012360 AGCD01070312;GBDK01432528;XM_005410378;XM_013507688;XM_013507689;XM_013507690 XP_005410435;XP_013363142;XP_013363143;XP_013363144 MODEL 39133354 snorna SNORA66 Small nucleolar RNA SNORA66 8763174 protein-coding Psmc4 proteasome 26S subunit, ATPase 4 INVOLVED IN blastocyst development (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); FOUND IN ciliary basal body (ortholog); cytosol (ortholog); cytosolic proteasome complex (ortholog) NW_004955578 1113445 1120050 - 102021402 AGCD01075510;GBCC01049534;XM_005414079 XP_005414136 MODEL 8863969 protein-coding LOC102011051 tetratricopeptide repeat protein 39B-like NW_004955441 6423398 6437402 + 102011051 AGCD01036920;GBDF01008292;XM_005390888 XP_005390945 MODEL 9040633 protein-coding Pde3b phosphodiesterase 3B ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); 3',5'-cyclic-nucleotide phosphodiesterase activity (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); endocrine pancreas development (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH chronic obstructive pulmonary disease (ortholog); intellectual disability (ortholog); polycystic ovary syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); guanyl-nucleotide exchange factor complex (ortholog) NW_004955414 29783999 29911329 + 102024216 AGCD01015716;AGCD01015717;GBBH01229313;GBCQ01150747;XM_005380333 XP_005380390 MODEL 9012667 pseudo LOC102017544 L-lactate dehydrogenase A chain pseudogene NW_004955458 4711786 4713302 + 102017544 AGCD01047431 MODEL 10338875 ncrna LOC106149867 uncharacterized LOC106149867 NW_004955456 1277678 1290158 - 106149867 AGCD01046226;GBDI01370116;XR_001236317 MODEL 39132937 snorna SNORD35A small nucleolar RNA, C/D box 35A 8794739 protein-coding Parp8 poly(ADP-ribose) polymerase family member 8 ENCODES a protein that exhibits NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN protein auto-ADP-ribosylation (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955446 16332614 16516719 - 102014719 AGCD01040320;AGCD01040321;AGCD01040322;AGCD01040323;AGCD01040324;AGCD01040325;GBCE01176200;GBDJ01387923;XM_013518449 XP_013373903 MODEL 8800101 protein-coding Btbd2 BTB domain containing 2 ASSOCIATED WITH cyclic hematopoiesis (ortholog); Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog); FOUND IN P-body (ortholog) NW_004955495 6072112 6085180 + 102022403 AGCD01062049;AGCD01062050;GBBH01062338;GBDF01084039;XM_005405935 XP_005405992 MODEL 8799023 ncrna LOC102008020 uncharacterized LOC102008020 NW_004955512 5854546 5876484 - 102008020 AGCD01066779;AGCD01066780;GBCQ01118865;XR_264451 MODEL 8956055 protein-coding Snx4 sorting nexin 4 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); insulin receptor binding (ortholog); leptin receptor binding (ortholog); INVOLVED IN endocytic recycling (ortholog); positive regulation of autophagosome assembly (ortholog); positive regulation of histamine secretion by mast cell (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Familial Thoracic Aortic Aneurysm 7 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic dynein complex (ortholog); early endosome (ortholog) NW_004955427 24520125 24579589 - 102022835 AGCD01027512;AGCD01027513;GBDF01152970;XM_005386551 XP_005386608 MODEL 8882421 protein-coding Ptx4 pentraxin 4 ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog) NW_004955442 15750881 15757906 + 102028804 AGCD01037878;GBDF01124152;XM_013517677;XM_013517678 XP_013373131;XP_013373132 MODEL 8809432 pseudo LOC102018689 thymocyte nuclear protein 1 pseudogene NW_004955454 4953581 4954554 - 102018689 AGCD01045129 MODEL 9031080 protein-coding Wdr4 WDR4 tRNA N7-guanosine methyltransferase non-catalytic subunit ENCODES a protein that exhibits enzyme activator activity (ortholog); tRNA methyltransferase activator activity (ortholog); INVOLVED IN tRNA (guanine-N7)-methylation (ortholog); tRNA modification (ortholog); ASSOCIATED WITH cataract 9 multiple types (ortholog); developmental and epileptic encephalopathy 30 (ortholog); Galloway-Mowat syndrome (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 39044328 39066277 + 102008697 AGCD01007821;GBCB01087848;XM_005375807;XM_005375808 XP_005375864;XP_005375865 MODEL 8945498 protein-coding Pigc phosphatidylinositol glycan anchor biosynthesis class C INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autoimmune lymphoproliferative syndrome (ortholog); Developmental Disabilities (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog) NW_004955406 12891187 12893935 - 102029040 AGCD01005928;GBCB01025746;XM_005374858 XP_005374915 MODEL 8827585 pseudo LOC102024347 serine/arginine-rich splicing factor 10 pseudogene NW_004955490 1469012 1472222 + 102024347 AGCD01060108;AGCD01060109 MODEL 8723360 ncrna LOC102011884 uncharacterized LOC102011884 NW_004955424 343712 352617 - 102011884 AGCD01024172;AGCD01024173;GBDF01052736;XR_261019 MODEL 10370792 protein-coding LOC106147034 transcription initiation factor TFIID subunit 4-like NW_004955513 5295814 5296856 + 106147034 AGCD01066967;GBDF01100307;GBDF01185808;XM_013506553 XP_013362007 MODEL 8879718 pseudo LOC102019091 SAP domain-containing ribonucleoprotein pseudogene NW_004955428 19048985 19053511 - 102019091 AGCD01028081;XM_005386848 MODEL 8739864 protein-coding Srpk1 SRSF protein kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); intracellular signal transduction (ortholog); negative regulation of viral genome replication (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955437 3664290 3729832 - 102003801 AGCD01034331;AGCD01034332;AGCD01034333;GBDF01002110;GBDI01120434;XM_005389568 XP_005389625 MODEL 8971563 ncrna LOC102006552 uncharacterized LOC102006552 NW_004955463 9133087 9192984 - 102006552 AGCD01049772;AGCD01049773;AGCD01049774;GBDF01280994;XR_263162 MODEL 8995426 protein-coding Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase ENCODES a protein that exhibits RNA ligase (GTP) activity (ortholog); vinculin binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); placenta development (ortholog); tRNA splicing, via endonucleolytic cleavage and ligation (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH glucose-galactose malabsorption (ortholog); muscular dystrophy-dystroglycanopathy type B6 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955405 41360370 41375215 - 102029147 AGCD01005548;AGCD01005549;GBCC01046704;XM_013519150 XP_013374604 MODEL 8792392 ncrna LOC102008437 uncharacterized LOC102008437 NW_004955501 6949506 6954792 - 102008437 AGCD01064202;GBDF01210166;XR_264256 MODEL 8718094 protein-coding Slc4a11 solute carrier family 4 member 11 ENCODES a protein that exhibits active borate transmembrane transporter activity (ortholog); bicarbonate transmembrane transporter activity (ortholog); protein dimerization activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); borate transport (ortholog); cellular hypotonic response (ortholog); ASSOCIATED WITH congenital hereditary endothelial dystrophy of cornea (ortholog); corneal dystrophy (ortholog); Corneal Dystrophy, Fuchs Endothelial, 4 (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955415 14123021 14133437 - 102025571 AGCD01016288;GBCE01153106;GBDK01418034;XM_013512257 XP_013367711 MODEL 8866043 ncrna LOC102024349 uncharacterized LOC102024349 NW_004955493 2933481 2936489 + 102024349 AGCD01060974;GBDF01276985;XR_264077 MODEL 9018318 protein-coding Trmt10a tRNA methyltransferase 10A ENCODES a protein that exhibits tRNA (guanosine(9)-N1)-methyltransferase activity (ortholog); tRNA binding (ortholog); INVOLVED IN magnesium ion homeostasis (ortholog); tRNA methylation (ortholog); tRNA N1-guanine methylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Microcephaly, Short Stature, and Impaired Glucose Metabolism 1 (ortholog); Nervous System Malformations (ortholog); FOUND IN actin cytoskeleton (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955496 8021747 8037562 + 102023493 AGCD01062387;GBDI01279046;XM_005406269;XM_005406270 XP_005406326;XP_005406327 MODEL 8702352 pseudo LOC102011889 KATNB1-like protein 1 NW_004955426 24920133 24920909 - 102011889 AGCD01026698 MODEL 8857109 protein-coding Psmc5 proteasome 26S subunit, ATPase 5 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); DNA-binding transcription factor binding (ortholog); general transcription initiation factor binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of inclusion body assembly (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); Neurodevelopmental Disorders (ortholog); Stevens-Johnson syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosolic proteasome complex (ortholog) NW_004955478 7996902 8002183 - 102019597 AGCD01056005;GBDK01011483;XM_005402183 XP_005402240 MODEL 8937658 protein-coding LOC102015637 dipeptidase 2 NW_004955484 8715037 8729483 + 102015637 AGCD01058394;AGCD01058395;GBDF01235917;XM_005403597;XM_005403598;XM_005403599;XM_005403600;XM_005403601;XM_013503879;XM_013503880;XM_013503881 XP_005403654;XP_005403655;XP_005403656;XP_005403657;XP_005403658;XP_013359333;XP_013359334;XP_013359335 MODEL 9039305 pseudo LOC102024355 solute carrier family 2, facilitated glucose transporter member 3 pseudogene NW_004955423 8600576 8602607 + 102024355 AGCD01023634;XM_005385137 MODEL 39132938 snorna SNORD35B small nucleolar RNA, C/D box 35B 8706237 protein-coding Tsc22d2 TSC22 domain family member 2 INVOLVED IN negative regulation of cell cycle (ortholog); response to osmotic stress (ortholog); ASSOCIATED WITH glycogen storage disease XV (ortholog); keratoconus (ortholog) NW_004955448 1639463 1678279 + 102024397 AGCD01041265;GBCE01089585;GBDI01261302;XM_013518634 XP_013374088 MODEL 8715103 protein-coding Oxnad1 oxidoreductase NAD binding domain containing 1 ASSOCIATED WITH 3p deletion syndrome (ortholog); FOUND IN mitochondrion (ortholog) NW_004955430 8550370 8586863 + 102027888 AGCD01029389;GBDF01193697;XM_005387452;XM_013515697;XM_013515698 XP_005387509;XP_013371151;XP_013371152 MODEL 8985118 protein-coding Plaa phospholipase A2 activating protein ENCODES a protein that exhibits phospholipase A2 activator activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); inflammatory response (ortholog); macroautophagy (ortholog); ASSOCIATED WITH genetic disease (ortholog); Inflammation (ortholog); Neurodevelopmental Disorder with Progressive Microcephaly, Spasticity, and Brain Anomalies (ortholog); FOUND IN cytoplasm (ortholog); extracellular exosome (ortholog); nucleus (ortholog) NW_004955472 7879196 7915040 + 102027635 AGCD01053633;AGCD01053634;AGCD01053635;GBCE01084855;XM_005401157 XP_005401214 MODEL 8857651 protein-coding Recql5 RecQ like helicase 5 ENCODES a protein that exhibits DNA helicase activity (ortholog); helicase activity (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to camptothecin (ortholog); cellular response to xenobiotic stimulus (ortholog); chromosome separation (ortholog); ASSOCIATED WITH myoepithelioma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955506 6574802 6612763 + 102015425 AGCD01065432;GBDI01137109;XM_005407490;XM_005407491 XP_005407547;XP_005407548 MODEL 8826889 ncrna LOC102024364 uncharacterized LOC102024364 NW_004955428 4671289 4689561 - 102024364 AGCD01027700;GBBH01044020;XR_261294 MODEL 9042158 protein-coding Btbd3 BTB domain containing 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cerebral cortex development (ortholog); dendrite morphogenesis (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955415 21588669 21602990 + 102027294 AGCD01016513;GBDF01221665;XM_005380880;XM_005380882;XM_013512365 XP_005380937;XP_005380939;XP_013367819 MODEL 39134228 snorna SNORD36 Small nucleolar RNA SNORD36 8928760 protein-coding Rab42 RAB42, member RAS oncogene family ASSOCIATED WITH autistic disorder (ortholog) NW_004955452 7673187 7676293 + 102019977 AGCD01044180;AGCD01044181;GBCE01167668;GBDJ01214087;XM_013519491 XP_013374945 MODEL 9030327 protein-coding Serpine3 serpin family E member 3 ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); Wilson disease (ortholog) NW_004955431 4694654 4727080 + 102003993 AGCD01030006;AGCD01030007;XM_005387608 XP_005387665 MODEL 8929571 protein-coding Endou endonuclease, poly(U) specific ENCODES a protein that exhibits RNA binding (ortholog); RNA endonuclease activity (ortholog); serine-type peptidase activity (ortholog); INVOLVED IN female pregnancy (ortholog); negative regulation of lipid catabolic process (ortholog); post-transcriptional gene silencing (ortholog); FOUND IN cytoplasm (ortholog) NW_004955500 6631749 6653457 - 102017475 AGCD01063888;AGCD01063889;GBDI01340378;XM_005406609;XM_013505657;XM_013505658;XM_013505660 XP_005406666;XP_013361111;XP_013361112;XP_013361114 MODEL 8924004 protein-coding Ncs1 neuronal calcium sensor 1 ENCODES a protein that exhibits calcium ion binding (ortholog); magnesium ion binding (ortholog); protein kinase binding (ortholog); INVOLVED IN positive regulation of calcium-mediated signaling (ortholog); positive regulation of exocytosis (ortholog); regulation of neuron projection development (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN axon (ortholog); calyx of Held (ortholog); cytoplasm (ortholog) NW_004955513 268979 289385 + 102015336 AGCD01066819;AGCD01066820;GBCQ01068735;GBCQ01068739;XM_005408341 XP_005408398 MODEL 8699652 protein-coding Lig1 DNA ligase 1 ENCODES a protein that exhibits DNA ligase activity (ortholog); INVOLVED IN base-excision repair (ortholog); DNA repair (ortholog); DNA replication (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH epilepsy with generalized tonic-clonic seizures (ortholog); immunodeficiency 96 (ortholog); inherited metabolic disorder (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955609 118442 160009 + 102008805 AGCD01077052;GBDF01051840;XM_005414919;XM_005414920;XM_005414923 XP_005414976;XP_005414977;XP_005414980 MODEL 39132716 snrna U4 U4 spliceosomal RNA 8933570 pseudo LOC102010306 L-lactate dehydrogenase A chain pseudogene NW_004955437 1653118 1654576 - 102010306 AGCD01034224 MODEL 150537112 snorna SNORD37 small nucleolar RNA, C/D box 37 8887057 ncrna LOC102010653 uncharacterized LOC102010653 NW_004955403 10370654 10380440 + 102010653 AGCD01001921;GBDF01176244;XR_001234452;XR_001234453;XR_259166 MODEL 8720377 pseudo LOC102006553 CAP-Gly domain-containing linker protein 1 pseudogene NW_004955463 5125915 5126991 - 102006553 AGCD01049632 MODEL 8865312 protein-coding Pou1f1 POU class 1 homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN adenohypophysis development (ortholog); B cell differentiation (ortholog); cell fate specification (ortholog); ASSOCIATED WITH combined or isolated pituitary hormone deficiency 1 (ortholog); combined pituitary hormone deficiency (ortholog); combined pituitary hormone deficiency 2 (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955407 5996016 6011483 + 102025654 AGCD01006940;GBDI01038943;XM_005375536 XP_005375593 MODEL 8846032 protein-coding Timm8a translocase of inner mitochondrial membrane 8A ENCODES a protein that exhibits identical protein binding (ortholog); zinc ion binding (ortholog); INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); protein targeting to mitochondrion (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; ASSOCIATED WITH Animal Disease Models (ortholog); Auditory Neuropathy (ortholog); autistic disorder (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrial intermembrane space protein transporter complex (ortholog); mitochondrion (ortholog) NW_004955503 7480075 7483218 - 102025707 AGCD01064794;GBCE01065783;XM_005406950 XP_005407007 MODEL 8734819 protein-coding Pde4a phosphodiesterase 4A ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); cAMP binding (ortholog); TPR domain binding (ortholog); INVOLVED IN cAMP catabolic process (ortholog); cellular response to xenobiotic stimulus (ortholog); modulation of chemical synaptic transmission (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); brucellosis (ortholog); Experimental Seizures (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extrinsic component of membrane (ortholog) NW_004955495 1659499 1693609 + 102004614 AGCD01061709;AGCD01061710;AGCD01061711;GBDF01002208;XM_005405595;XM_005405596;XM_013505161 XP_005405652;XP_005405653;XP_013360615 MODEL 8711063 protein-coding Slc4a1ap solute carrier family 4 member 1 adaptor protein ASSOCIATED WITH Tatton-Brown-Rahman syndrome (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955469 9617238 9654972 + 102007215 AGCD01052510;AGCD01052511;GBDF01089096;XM_005400510;XM_005400511 XP_005400567;XP_005400568 MODEL 8864349 protein-coding Rhpn2 rhophilin Rho GTPase binding protein 2 INVOLVED IN glomerular filtration (ortholog); negative regulation of stress fiber assembly (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Colorectal Neoplasms (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955468 4932437 4976584 + 102022907 AGCD01051930;GBCQ01096955;GBDF01303848;XM_013522388 XP_013377842 MODEL 9001773 protein-coding Proser1 proline and serine rich 1 NW_004955431 7288594 7314393 + 102018756 AGCD01030083;AGCD01030084;GBBH01192909;GBDF01277260;XM_005387643 XP_005387700 MODEL 8762303 pseudo LOC102018690 voltage-dependent anion-selective channel protein 1 pseudogene NW_004955407 3264485 3268366 + 102018690 AGCD01006856;XR_259547 MODEL 8870437 pseudo LOC102012683 cyclin-dependent kinase 1-like NW_004955530 1703354 1747813 + 102012683 AGCD01069897;AGCD01069898;AGCD01069899 MODEL 8843577 protein-coding Tprg1l tumor protein p63 regulated 1 like ENCODES a protein that exhibits calmodulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN calcineurin-NFAT signaling cascade (ortholog); negative regulation of synaptic transmission (ortholog); presynaptic modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); Goldberg-Shprintzen syndrome (ortholog); FOUND IN calyx of Held (ortholog); extrinsic component of synaptic vesicle membrane (ortholog); glutamatergic synapse (ortholog) NW_004955486 8007678 8013996 - 102027308 AGCD01059145;GBDF01009572;XM_005404149 XP_005404206 MODEL 8799538 protein-coding Timm8b translocase of inner mitochondrial membrane 8 homolog B PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; ASSOCIATED WITH ataxia telangiectasia (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); Carney-Stratakis syndrome (ortholog); FOUND IN mitochondrion (ortholog) NW_004955412 13766532 13768453 - 102026956 AGCD01012845;GBDF01002080;XM_005378108 XP_005378165 MODEL 9027598 protein-coding Pfdn2 prefoldin subunit 2 ENCODES a protein that exhibits amyloid-beta binding (ortholog); protein folding chaperone (ortholog); unfolded protein binding (ortholog); INVOLVED IN negative regulation of amyloid fibril formation (ortholog); positive regulation of cytoskeleton organization (ortholog); protein folding (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955468 12868582 12882884 - 102030175 AGCD01052190;GBDJ01087416;XM_005400251 XP_005400308 MODEL 8865060 protein-coding Wdr41 WD repeat domain 41 ENCODES a protein that exhibits GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN regulation of autophagy (ortholog); ASSOCIATED WITH Hermansky-Pudlak syndrome 2 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); guanyl-nucleotide exchange factor complex (ortholog) NW_004955425 23366130 23510897 + 102016494 AGCD01025845;AGCD01025846;GBDF01088944;XM_005386025;XM_013514857 XP_005386082;XP_013370311 MODEL 10140549 ncrna LOC106147035 uncharacterized LOC106147035 NW_004955513 4889936 4892772 - 106147035 AGCD01066943;GBDF01102266;XR_001231733 MODEL 8981983 ncrna LOC102021611 uncharacterized LOC102021611 NW_004955577 873676 895172 - 102021611 AGCD01075417;GBDF01145731;XR_265081 MODEL 8712895 protein-coding Pmfbp1 polyamine modulated factor 1 binding protein 1 INVOLVED IN gene expression (ortholog); protein localization (ortholog); protein-containing complex assembly (ortholog); ASSOCIATED WITH male infertility (ortholog); oligospermia (ortholog); spermatogenic failure 31 (ortholog); FOUND IN cytoplasm (ortholog); sperm flagellum (ortholog); sperm head (ortholog) NW_004955484 4776358 4822312 - 102018933 AGCD01058232;GBDF01043820;XM_005403532;XM_013503846;XM_013503847 XP_005403589;XP_013359300;XP_013359301 MODEL 8866244 protein-coding LOC102006914 olfactory receptor 1N2-like NW_004955419 5391871 5392860 + 102006914 AGCD01019805;XM_005382526 XP_005382583 MODEL 8838344 protein-coding Ncstn nicastrin ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); ATPase binding (ortholog); endopeptidase activator activity (ortholog); INVOLVED IN adult behavior (ortholog); amyloid precursor protein biosynthetic process (ortholog); amyloid precursor protein catabolic process (ortholog); PARTICIPATES IN Notch signaling pathway; syndecan signaling pathway; ASSOCIATED WITH alcohol use disorder (ortholog); autoimmune interstitial lung, joint, and kidney disease (ortholog); chronic myeloid leukemia (ortholog); FOUND IN early endosome (ortholog); endoplasmic reticulum (ortholog); gamma-secretase complex (ortholog) NW_004955468 12111078 12126404 + 102017324 AGCD01052143;AGCD01052144;GBDF01046063;XM_005400205 XP_005400262 MODEL 39133472 snrna U4 U4 spliceosomal RNA 8779811 protein-coding Slc25a51 solute carrier family 25 member 51 ENCODES a protein that exhibits NAD transmembrane transporter activity (ortholog); INVOLVED IN aerobic electron transport chain (ortholog); mitochondrial NAD transmembrane transport (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955419 28580055 28594049 + 102028197 AGCD01020467;AGCD01020468;AGCD01020469;GBCE01108733;GBDF01122414;XM_013513300 XP_013368754 MODEL 8728965 pseudo LOC102010310 eukaryotic translation initiation factor 3 subunit F-like NW_004955441 1151626 1157056 - 102010310 AGCD01036747 MODEL 9057942 ncrna LOC102010654 uncharacterized LOC102010654 NW_004955451 2820724 2842826 + 102010654 AGCD01043023;GBDF01304074;XR_262571 MODEL 9060024 ncrna LOC102009556 uncharacterized LOC102009556 NW_004955444 690141 694617 - 102009556 AGCD01038682;GBCE01026109;XR_262224;XR_262225 MODEL 39133474 snrna U4 U4 spliceosomal RNA 8900029 ncrna LOC102011056 uncharacterized LOC102011056 NW_004955443 9637905 9651098 + 102011056 AGCD01038358;GBDF01014410;XR_262200;XR_262201 MODEL 8819676 protein-coding Tsc22d3 TSC22 domain family member 3 INVOLVED IN body fluid secretion (ortholog); negative regulation of activation-induced cell death of T cells (ortholog); response to osmotic stress (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Charcot-Marie-Tooth disease type X (ortholog); FOUND IN nucleus (ortholog) NW_004955490 8177356 8238373 + 102017672 AGCD01060277;GBCE01115007;GBDF01157293;XM_005404695 XP_005404752 MODEL 9026843 protein-coding Plaat1 phospholipase A and acyltransferase 1 ENCODES a protein that exhibits N-acyltransferase activity (ortholog); O-acyltransferase activity (ortholog); phospholipase A1 activity (ortholog); INVOLVED IN ether lipid metabolic process (ortholog); N-acylphosphatidylethanolamine metabolic process (ortholog); peroxisome organization (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cytoplasm (ortholog); nuclear envelope lumen (ortholog); nucleus (ortholog) NW_004955420 15305901 15326444 - 102008629 AGCD01020968;GBBH01131778;XM_005383210;XM_005383211 XP_005383267;XP_005383268 MODEL 8872874 protein-coding LOC102012689 keratin, type II cytoskeletal 73 NW_004955547 3011391 3021597 - 102012689 AGCD01072303;GBCB01047840;XM_005411952;XM_005411953 XP_005412009;XP_005412010 MODEL 8953768 pseudo LOC102017545 neurofilament heavy polypeptide pseudogene NW_004955408 5855363 5857838 + 102017545 AGCD01008158 MODEL 9060620 protein-coding Btbd6 BTB domain containing 6 ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); focal segmental glomerulosclerosis 5 (ortholog); immunodeficiency 132A (ortholog) NW_004955538 3494950 3496888 + 102005179 AGCD01071166;GBBH01033922;GBCE01001883;XM_005410859 XP_005410916 MODEL 10157398 protein-coding LOC106149868 collagen alpha-3(IX) chain-like NW_004955456 3034976 3086194 - 106149868 AGCD01046261;AGCD01046262;AGCD01046263;GBDF01062625;XM_013520506 XP_013375960 MODEL 10138677 protein-coding LOC106147036 uncharacterized LOC106147036 NW_004955513 2065438 2068896 - 106147036 AGCD01066868;GBBH01165051;XM_013506573 XP_013362027 MODEL 8946950 protein-coding Psmc6 proteasome 26S subunit, ATPase 6 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of inclusion body assembly (ortholog); FOUND IN cytosolic proteasome complex (ortholog); inclusion body (ortholog); nucleus (ortholog) NW_004955409 10454210 10474872 - 102009582 AGCD01009472;GBDJ01190316;XM_005376779 XP_005376836 MODEL 8944078 protein-coding Pfdn4 prefoldin subunit 4 ENCODES a protein that exhibits amyloid-beta binding (ortholog); unfolded protein binding (ortholog); INVOLVED IN negative regulation of amyloid fibril formation (ortholog); protein folding (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955445 4832220 4844007 - 102014300 AGCD01039432;AGCD01039433;GBDJ01311379;XM_005392283;XM_013518390 XP_005392340;XP_013373844 MODEL 8872215 protein-coding Wdr43 WD repeat domain 43 ENCODES a protein that exhibits RNA polymerase II complex binding (ortholog); transcription elongation factor activity (ortholog); INVOLVED IN positive regulation of rRNA processing (ortholog); positive regulation of transcription by RNA polymerase I (ortholog); regulation of stem cell population maintenance (ortholog); ASSOCIATED WITH Neuroblastoma 3 (ortholog); FOUND IN chromatin (ortholog); fibrillar center (ortholog); nucleolus (ortholog) NW_004955469 10777332 10835577 + 102016256 AGCD01052550;AGCD01052551;GBDF01226152;XM_005400538;XM_005400539 XP_005400595;XP_005400596 MODEL 8798750 ncrna LOC102017548 uncharacterized LOC102017548 NW_004955409 22184677 22188277 - 102017548 AGCD01010027;AGCD01010028;AGCD01010029;GBDF01068620;XR_259786 MODEL 8894848 protein-coding Smarcd2 SWI/SNF related BAF chromatin remodeling complex subunit D2 INVOLVED IN chromatin remodeling (ortholog); nucleosome disassembly (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH genetic disease (ortholog); myeloid leukemia (ortholog); neutropenia (ortholog); FOUND IN nucleoplasm (ortholog); SWI/SNF complex (ortholog) NW_004955478 7984736 7996843 + 102019912 AGCD01056004;AGCD01056005;GBBH01065427;GBDF01128362;XM_013503158 XP_013358612 MODEL 39133357 snorna SNORA66 Small nucleolar RNA SNORA66 8969224 protein-coding LOC102006556 histone H3.1 NW_004955465 13374516 13388289 + 102006556 AGCD01050605;AGCD01050606;AGCD01050607;GBDJ01218778;XM_013521798;XM_013521799 XP_013377252;XP_013377253 MODEL 8716732 protein-coding Pigf phosphatidylinositol glycan anchor biosynthesis class F INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH Lynch syndrome (ortholog); ONYCHODYSTROPHY, OSTEODYSTROPHY, IMPAIRED INTELLECTUAL DEVELOPMENT, AND SEIZURES SYNDROME (ortholog); SHORT STATURE WITH MICROCEPHALY AND DISTINCTIVE FACIES (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955441 13492334 13525581 - 102012131 AGCD01037151;GBDF01043189;XM_005390976;XM_005390977;XR_262076 XP_005391033;XP_005391034 MODEL 8747116 protein-coding LOC102019093 vomeronasal type-1 receptor 90-like NW_004955429 12472731 12473747 - 102019093 AGCD01028719;XM_005387251 XP_005387308 MODEL 8778454 protein-coding Ribc1 RIB43A domain with coiled-coils 1 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH Atkin Syndrome (ortholog); autistic disorder (ortholog); Cornelia de Lange syndrome 2 (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955475 468435 486441 + 102015509 AGCD01054692;GBCE01170361;XM_005401496;XM_005401497;XM_005401498;XM_005401499;XM_005401502 XP_005401553;XP_005401554;XP_005401555;XP_005401556;XP_005401559 MODEL 8942501 ncrna LOC102024365 uncharacterized LOC102024365 NW_004955429 22477975 22490414 + 102024365 AGCD01029028;GBDJ01202921;XR_261390;XR_261391 MODEL 10255180 protein-coding Proser2 proline and serine rich 2 ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog) NW_004955421 27809610 27823125 + 106148411 AGCD01022296;AGCD01022297;GBCB01022185;GBDJ01030727;XM_013513651 XP_013369105 MODEL 8834371 protein-coding Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); nuclear receptor binding (ortholog); INVOLVED IN cardiac right ventricle formation (ortholog); chromatin remodeling (ortholog); heart morphogenesis (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH COVID-19 (ortholog); Left Ventricular Hypertrophy (ortholog); lethal congenital glycogen storage disease of heart (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nBAF complex (ortholog) NW_004955491 5653284 5657546 - 102006255 AGCD01060494;GBCE01009890;GBDJ01079984;XM_005404823;XM_013504626 XP_005404880;XP_013360080 MODEL 8705616 protein-coding Redic1 regulator of DNA class I crossover intermediates 1 ASSOCIATED WITH spermatogenic failure (ortholog) NW_004955505 676988 763746 - 102029312 AGCD01064961;GBDF01155084;XM_005407103;XM_005407106;XM_013505952;XM_013505953;XM_013505954;XM_013505955;XM_013505956 XP_005407160;XP_005407163;XP_013361406;XP_013361407;XP_013361408;XP_013361409;XP_013361410 MODEL 8797137 protein-coding Endov endonuclease V ENCODES a protein that exhibits DNA binding (ortholog); endodeoxyribonuclease activity, producing 5'-phosphomonoesters (ortholog); magnesium ion binding (ortholog); INVOLVED IN DNA repair (ortholog); ASSOCIATED WITH Moyamoya Disease 2 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); nucleolus (ortholog) NW_004955506 2483409 2495484 - 102023504 AGCD01065296;GBCE01094306;XM_013506016;XM_013506017 XP_013361470;XP_013361471 MODEL 9060054 protein-coding Parp9 poly(ADP-ribose) polymerase family member 9 ENCODES a protein that exhibits ADP-D-ribose binding (ortholog); enzyme binding (ortholog); enzyme inhibitor activity (ortholog); INVOLVED IN DNA damage checkpoint signaling (ortholog); double-strand break repair (ortholog); negative regulation of catalytic activity (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955427 21770158 21806091 - 102011564 AGCD01027458;AGCD01027459;GBBH01091621;XM_013515094;XM_013515095;XM_013515096 XP_013370548;XP_013370549;XP_013370550 MODEL 8741444 protein-coding Rtel1 regulator of telomere elongation helicase 1 ENCODES a protein that exhibits ATP binding (ortholog); DNA helicase activity (ortholog); DNA polymerase binding (ortholog); INVOLVED IN DNA strand displacement (ortholog); mitotic telomere maintenance via semi-conservative replication (ortholog); negative regulation of DNA recombination (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Autosomal Dominant Dyskeratosis Congenita (ortholog); autosomal dominant dyskeratosis congenita 1 (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear membrane (ortholog); nuclear speck (ortholog) NW_004955528 531680 578003 - 102007691 AGCD01069537;AGCD01069538;GBDJ01227066;XM_013507437;XM_013507438;XM_013507439;XM_013507440;XM_013507441;XM_013507442;XM_013507443;XM_013507444;XM_013507445;XR_001231981 XP_013362891;XP_013362892;XP_013362893;XP_013362894;XP_013362895;XP_013362896;XP_013362897;XP_013362898;XP_013362899 MODEL 9048400 protein-coding Trmt10b tRNA methyltransferase 10B ENCODES a protein that exhibits tRNA (guanosine(9)-N1)-methyltransferase activity (ortholog); INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ortholog); FOUND IN cytosol (ortholog); mitochondrial inner membrane (ortholog); TIM22 mitochondrial import inner membrane insertion complex (ortholog) NW_004955419 28693509 28720006 - 102004072 AGCD01020473;GBDI01353475;XM_005382868;XM_005382869;XM_005382870;XM_005382871;XM_005382872;XM_013513181;XM_013513182 XP_005382925;XP_005382926;XP_005382927;XP_005382928;XP_005382929;XP_013368635;XP_013368636 MODEL 9016547 protein-coding Tprkb TP53RK binding protein ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN tRNA threonylcarbamoyladenosine modification (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); Galloway-Mowat syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); EKC/KEOPS complex (ortholog) NW_004955424 11961994 11969610 - 102010066 AGCD01024584;GBDI01179923;XM_005385539;XM_005385540;XM_005385541;XM_005385542;XM_005385544 XP_005385596;XP_005385597;XP_005385598;XP_005385599;XP_005385601 MODEL 8729020 protein-coding Serpinf1 serpin family F member 1 INVOLVED IN cellular response to cobalt ion (ortholog); cellular response to dexamethasone stimulus (ortholog); cellular response to glucose stimulus (ortholog); ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); adenoid cystic carcinoma (ortholog); Albuminuria (ortholog); FOUND IN axon (ortholog); axon hillock (ortholog); basement membrane (ortholog) NW_004955481 1414930 1426436 - 102015719 AGCD01056832;GBDK01110727;XM_005402604;XM_005402605 XP_005402661;XP_005402662 MODEL 8765068 pseudo LOC102015639 protein arginine N-methyltransferase 3 pseudogene NW_004955487 2902814 2904330 - 102015639 AGCD01059272 MODEL 8853922 ncrna LOC102023313 uncharacterized LOC102023313 NW_004955403 5128502 5129923 - 102023313 AGCD01001804;GBDF01077482;XR_259159 MODEL 8760364 protein-coding Btbd7 BTB domain containing 7 INVOLVED IN regulation of branching involved in salivary gland morphogenesis (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); DICER1 syndrome (ortholog); pleuropulmonary blastoma (ortholog); FOUND IN nucleus (ortholog) NW_004955438 15345678 15445705 - 102004643 AGCD01035365;AGCD01035366;AGCD01035367;GBCB01121971;XM_005390344;XM_013517216;XM_013517217;XM_013517218 XP_005390401;XP_013372670;XP_013372671;XP_013372672 MODEL 8941599 protein-coding Snx5 sorting nexin 5 ENCODES a protein that exhibits D1 dopamine receptor binding (ortholog); dynactin binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN epidermal growth factor catabolic process (ortholog); negative regulation of blood pressure (ortholog); pinocytosis (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH congenital dyserythropoietic anemia type II (ortholog); Disease Progression (ortholog); familial hyperinsulinemic hypoglycemia 1 (ortholog); FOUND IN brush border (ortholog); cytoplasmic side of early endosome membrane (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955415 26786836 26805762 - 102012316 AGCD01016607;AGCD01016608;GBCB01019926;GBDK01008760;XM_005380914 XP_005380971 MODEL 8971411 protein-coding ND1 NADH dehydrogenase subunit 1 MT 2722 3679 + 15822218 JX312692 AFQ55777;YP_008080745 REVIEWED 8801604 protein-coding Oxr1 oxidation resistance 1 ENCODES a protein that exhibits oxidoreductase activity (ortholog); INVOLVED IN adult walking behavior (ortholog); cellular response to hydroperoxide (ortholog); negative regulation of cellular response to oxidative stress (ortholog); ASSOCIATED WITH cerebellar hyplasia/atrophy, epilepsy, and global developmental delay (ortholog); cerebellar hypoplasia (ortholog); epilepsy (ortholog); FOUND IN mitochondrion (ortholog); nucleolus (ortholog) NW_004955417 29605962 29875041 + 102025685 AGCD01018603;AGCD01018604;AGCD01018605;AGCD01018606;AGCD01018607;AGCD01018608;AGCD01018609;AGCD01018610;AGCD01018611;GBCE01007831;XM_005381956;XM_005381958;XM_005381959;XM_005381960;XM_005381961;XM_005381962;XM_005381963;XM_005381964;XM_013512774 XP_005382013;XP_005382015;XP_005382016;XP_005382017;XP_005382018;XP_005382019;XP_005382020;XP_005382021;XP_013368228 MODEL 9063767 protein-coding LOC102010656 laminin subunit alpha-3-like NW_004955649 79435 83763 - 102010656 AGCD01077784;AGCD01077785;GBDI01289779;GBDJ01229315;XM_013510173 XP_013365627 MODEL 39131917 snorna SNORA70 Small nucleolar RNA SNORA70 8719673 protein-coding Slc4a2 solute carrier family 4 member 2 ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); enzyme binding (ortholog); INVOLVED IN amelogenesis (ortholog); chloride transport (ortholog); digestive tract development (ortholog); ASSOCIATED WITH Alkalosis (ortholog); Autosomal Recessive Osteopetrosis 9 (ortholog); autosomal recessive polycystic kidney disease (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); membrane (ortholog) NW_004955491 5498472 5513389 + 102030539 AGCD01060485;GBDJ01004266;XM_005404810;XM_005404811;XM_013504586 XP_005404867;XP_005404868;XP_013360040 MODEL 8878145 protein-coding LOC102017549 uncharacterized LOC102017549 NW_004955409 35685901 35755271 + 102017549 AGCD01010428;AGCD01010429;AGCD01010430;AGCD01010431;AGCD01010432;GBBH01115785;XM_013510221 XP_013365675 MODEL 8961220 protein-coding Rab43 RAB43, member RAS oncogene family ENCODES a protein that exhibits GTPase activity (ortholog); INVOLVED IN cellular response to type II interferon (ortholog); Golgi organization (ortholog); phagosome maturation (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); immunodeficiency 21 (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN Golgi apparatus (ortholog); phagocytic vesicle (ortholog) NW_004955429 13474460 13506979 - 102010504 AGCD01028750;AGCD01028751;AGCD01028752;GBBH01114788;GBCE01117554;XM_005386994 XP_005387051 MODEL 39133747 snorna SNORD39 Small nucleolar RNA SNORD55/SNORD39 9055009 pseudo LOC102011060 MICOS complex subunit MIC27 pseudogene NW_004955444 6968368 6969142 - 102011060 AGCD01038884 MODEL 8792308 pseudo LOC102005500 sorting nexin-2 pseudogene NW_004955434 22965591 22967140 - 102005500 AGCD01032690 MODEL 8913123 protein-coding Plaat5 phospholipase A and acyltransferase 5 ENCODES a protein that exhibits N-acyltransferase activity (ortholog); phospholipase A1 activity (ortholog); phospholipase A2 activity (ortholog); INVOLVED IN N-acylphosphatidylethanolamine metabolic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog) NW_004955599 217365 247914 - 102029811 AGCD01076631;AGCD01076632;AGCD01076633;AGCD01076634;AGCD01076635;AGCD01076636;GBDF01006273;XM_005414748;XM_005414749 XP_005414805;XP_005414806 MODEL 9015649 ncrna LOC102008027 uncharacterized LOC102008027 NW_004955530 1812786 1910843 - 102008027 AGCD01069900;AGCD01069901;AGCD01069902;GBDF01148074;XR_001232002 MODEL 8814119 pseudo LOC102003712 N-alpha-acetyltransferase 50 pseudogene NW_004955402 792233 792986 - 102003712 AGCD01000033 MODEL 8787400 protein-coding Eng endoglin ENCODES a protein that exhibits BMP binding (ortholog); coreceptor activity (ortholog); galactose binding (ortholog); INVOLVED IN angiogenesis (ortholog); artery morphogenesis (ortholog); atrial cardiac muscle tissue morphogenesis (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); arteriovenous malformation (ortholog); arteriovenous malformations of the brain (ortholog); FOUND IN cell surface (ortholog); endothelial microparticle (ortholog); external side of plasma membrane (ortholog) NW_004955419 818797 853319 + 102025796 AGCD01019613;AGCD01019614;AGCD01019615;AGCD01019616;AGCD01019617;GBCQ01003907;XM_013513164;XM_013513165;XM_013513166;XM_013513167 XP_013368618;XP_013368619;XP_013368620;XP_013368621 MODEL 10113434 protein-coding LOC106149869 uncharacterized LOC106149869 NW_004955456 3797702 3799335 - 106149869 AGCD01046282;GBDI01233477;XM_013520507 XP_013375961 MODEL 9043215 protein-coding Pudp pseudouridine 5'-phosphatase ENCODES a protein that exhibits pseudouridine 5'-phosphatase activity (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autistic disorder (ortholog); cerebral palsy (ortholog) NW_004955499 5110297 5181487 - 102017474 AGCD01063508;AGCD01063509;GBDI01066523;XM_005406540 XP_005406597 MODEL 8909367 protein-coding Parpbp PARP1 binding protein INVOLVED IN negative regulation of double-strand break repair via homologous recombination (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog) NW_004955405 37297816 37357191 + 102030034 AGCD01005450;AGCD01005451;AGCD01005452;GBBH01195619;XM_005374563;XM_005374564;XM_005374565;XM_005374566;XM_013518744;XM_013518752;XM_013518756 XP_005374620;XP_005374621;XP_005374622;XP_005374623;XP_013374198;XP_013374206;XP_013374210 MODEL 8909328 protein-coding Slc25a53 solute carrier family 25 member 53 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN mitochondrion (ortholog) NW_004955548 947623 1008085 - 102029904 AGCD01072349;AGCD01072350;AGCD01072351;AGCD01072352;AGCD01072353;GBCE01004957;XM_005412000;XM_005412001;XM_005412003;XM_005412004;XM_005412005;XM_013508524;XM_013508525;XM_013508526;XM_013508527;XR_001232240 XP_005412057;XP_005412058;XP_005412060;XP_005412061;XP_005412062;XP_013363978;XP_013363979;XP_013363980;XP_013363981 MODEL 8712326 protein-coding Psmd1 proteasome 26S subunit, non-ATPase 1 ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog) NW_004955453 4314177 4397972 - 102024421 AGCD01044686;AGCD01044687;GBCQ01003438;GBDI01005709;XM_013519960 XP_013375414 MODEL 8717172 pseudo LOC102008034 MAP3K12-binding inhibitory protein 1 pseudogene NW_004955441 160336 161394 + 102008034 AGCD01036685 MODEL 9007994 protein-coding Srpk2 SRSF protein kinase 2 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); ATP binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN angiogenesis (ortholog); intracellular signal transduction (ortholog); negative regulation of viral genome replication (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955410 9807936 10034760 - 102020224 AGCD01010776;AGCD01010777;AGCD01010778;AGCD01010779;AGCD01010780;AGCD01010781;AGCD01010782;AGCD01010783;GBDF01187645;XM_005377241;XM_005377243;XM_013510522;XM_013510524;XM_013510525;XM_013510526 XP_005377298;XP_005377300;XP_013365976;XP_013365978;XP_013365979;XP_013365980 MODEL 39131530 protein-coding BTBD9 BTB domain containing 9 8840949 protein-coding LOC102019094 mammaglobin-A-like NW_004955511 6298385 6301018 - 102019094 AGCD01066600;XM_005408170 XP_005408227 MODEL 9020721 pseudo LOC102010667 60S acidic ribosomal protein P2 pseudogene NW_004955453 8336273 8336716 - 102010667 AGCD01044760;XM_005395716 MODEL 8743252 ncrna LOC102024366 uncharacterized LOC102024366 NW_004955430 7934793 7959906 - 102024366 AGCD01029378;GBDF01190263;XR_001234568;XR_001234569;XR_001234570 MODEL 39131918 snorna SNORA70 Small nucleolar RNA SNORA70 8857160 ncrna LOC102021615 uncharacterized LOC102021615 NW_004955403 17548756 17613098 - 102021615 AGCD01002079;AGCD01002080;GBDF01001507;XR_259181 MODEL 8895275 protein-coding Lig3 DNA ligase 3 ENCODES a protein that exhibits DNA ligase (ATP) activity (ortholog); DNA ligase activity (ortholog); INVOLVED IN base-excision repair (ortholog); double-strand break repair (ortholog); double-strand break repair via alternative nonhomologous end joining (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH Cardiac Arrhythmias (ortholog); genetic disease (ortholog); middle cerebral artery infarction (ortholog); FOUND IN condensed nuclear chromosome (ortholog); DNA ligase III-XRCC1 complex (ortholog); mitochondrion (ortholog) NW_004955481 9696050 9716154 + 102006246 AGCD01057112;GBCB01039491;GBDF01007194;XM_013503401 XP_013358855 MODEL 8785931 protein-coding Pml PML nuclear body scaffold ENCODES a protein that exhibits cobalt ion binding (ortholog); identical protein binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN apoptotic process (ortholog); branching involved in mammary gland duct morphogenesis (ortholog); cell fate commitment (ortholog); PARTICIPATES IN mTOR signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955450 3654854 3692057 - 102020735 AGCD01042439;AGCD01042440;AGCD01042441;GBDJ01009152;XM_013518918;XM_013518919;XM_013518920;XM_013518921;XR_001235868 XP_013374372;XP_013374373;XP_013374374;XP_013374375 MODEL 8794988 protein-coding Proser3 proline and serine rich 3 ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN centrosome (ortholog) NW_004955468 2786736 2796851 - 102023137 AGCD01051838;GBDI01293635;XM_013522290 XP_013377744 MODEL 8804866 protein-coding LOC102006916 olfactory receptor 13F1 NW_004955419 21914434 21915393 - 102006916 AGCD01020292;XM_005382939 XP_005382996 MODEL 10092725 protein-coding LOC106147037 skin secretory protein xP2-like NW_004955513 3288308 3311868 - 106147037 AGCD01066900;AGCD01066901;XM_013506576 XP_013362030 MODEL 8954796 protein-coding Pde4b phosphodiesterase 4B ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); cAMP binding (ortholog); gamma-tubulin binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to xenobiotic stimulus (ortholog); leukocyte migration (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); alcohol dependence (ortholog); alcohol use disorder (ortholog); FOUND IN cell periphery (ortholog); centrosome (ortholog); cytosol (ortholog) NW_004955423 24464503 24906409 - 102021568 AGCD01024036;AGCD01024037;AGCD01024038;AGCD01024039;AGCD01024040;AGCD01024041;AGCD01024042;AGCD01024043;AGCD01024044;AGCD01024045;AGCD01024046;GBCB01058791;XM_005385294;XM_005385295;XM_005385297;XM_005385298 XP_005385351;XP_005385352;XP_005385354;XP_005385355 MODEL 8796740 pseudo LOC102010312 transcription and mRNA export factor ENY2 pseudogene NW_004955553 1476433 1476725 - 102010312 AGCD01072886 MODEL 8764834 protein-coding Rasgrf2 Ras protein specific guanine nucleotide releasing factor 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN long-term synaptic potentiation (ortholog); postsynaptic modulation of chemical synaptic transmission (ortholog); regulation of NMDA receptor activity (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN endoplasmic reticulum (ortholog); glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955418 28930666 29126495 - 102005807 AGCD01019448;AGCD01019449;AGCD01019450;AGCD01019451;AGCD01019452;AGCD01019453;GBDK01432521;XM_013512878 XP_013368332 MODEL 8840842 protein-coding LOC102015640 ubiquitin carboxyl-terminal hydrolase 17-like protein 6 NW_004955487 109914 111590 - 102015640 AGCD01059207;XM_005404451 XP_005404508 MODEL 8882475 protein-coding Tprn taperin ENCODES a protein that exhibits actin binding (ortholog); protein phosphatase 1 binding (ortholog); protein phosphatase binding (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); sensory perception of sound (ortholog); stereocilium maintenance (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal recessive nonsyndromic deafness (ortholog); FOUND IN cytoplasm (ortholog); microvillus (ortholog); nucleoplasm (ortholog) NW_004955513 5196871 5205945 - 102030460 AGCD01066961;AGCD01066962;GBBH01187440;GBCB01087279;XM_005408661 XP_005408718 MODEL 8740113 protein-coding Wdr44 WD repeat domain 44 ENCODES a protein that exhibits molecular sequestering activity (ortholog); small GTPase binding (ortholog); INVOLVED IN cytosolic ciliogenesis (ortholog); negative regulation of cilium assembly (ortholog); regulation of cell migration (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN endosome membrane (ortholog); Golgi apparatus (ortholog); microtubule (ortholog) NW_004955534 1492990 1599402 - 102017913 AGCD01070498;AGCD01070499;AGCD01070500;AGCD01070501;AGCD01070502;AGCD01070503;GBCB01089438;XM_005410462 XP_005410519 MODEL 9016046 pseudo LOC102008438 CDC42 small effector protein 1 pseudogene NW_004955503 2028864 2063030 - 102008438 AGCD01064593;AGCD01064594 MODEL 8943205 protein-coding Timm9 translocase of inner mitochondrial membrane 9 ENCODES a protein that exhibits membrane insertase activity (ortholog); protein homodimerization activity (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; ASSOCIATED WITH Joubert syndrome 23 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial intermembrane space protein transporter complex (ortholog) NW_004955466 12115003 12125024 - 102005688 AGCD01051113;GBCE01045930;XM_005399218;XM_005399219;XM_013521977 XP_005399275;XP_005399276;XP_013377431 MODEL 8927963 ncrna LOC102010314 uncharacterized LOC102010314 NW_004955555 108802 119271 + 102010314 AGCD01073024;GBBH01226678;XR_264947;XR_264948 MODEL 8995744 ncrna LOC102011891 uncharacterized LOC102011891 NW_004955429 17730248 17732306 - 102011891 AGCD01028865;GBDF01041050;XR_261353 MODEL 9062865 protein-coding Ribc2 RIB43A domain with coiled-coils 2 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); sperm flagellum (ortholog) NW_004955413 29765119 29781206 + 102004155 AGCD01014594;GBCE01075814;XM_005379489 XP_005379546 MODEL 8751759 pseudo LOC102012691 DNA-directed RNA polymerase III subunit RPC7 pseudogene NW_004955551 615007 616795 + 102012691 AGCD01072666 MODEL 8803842 protein-coding Pars2 prolyl-tRNA synthetase 2, mitochondrial ASSOCIATED WITH developmental and epileptic encephalopathy 75 (ortholog); genetic disease (ortholog); myoepithelioma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955464 4616137 4628873 + 102025772 AGCD01049992;GBCQ01179138;XM_005398513;XM_005398514;XM_005398516;XM_013521704;XM_013521705;XM_013521706;XM_013521707 XP_005398570;XP_005398571;XP_005398573;XP_013377158;XP_013377159;XP_013377160;XP_013377161 MODEL 8979433 protein-coding Pde4c phosphodiesterase 4C ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); INVOLVED IN negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); FOUND IN cilium (ortholog) NW_004955524 3199534 3218013 + 102020278 AGCD01068867;GBCQ01169107;XM_013507254;XM_013507255;XM_013507256;XM_013507257;XM_013507258;XM_013507259;XM_013507260;XM_013507261 XP_013362708;XP_013362709;XP_013362710;XP_013362711;XP_013362712;XP_013362713;XP_013362714;XP_013362715 MODEL 9013088 protein-coding Pigg phosphatidylinositol glycan anchor biosynthesis class G (EMM blood group) ENCODES a protein that exhibits CP2 mannose-ethanolamine phosphotransferase activity (ortholog); transferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH cherubism (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955514 119804 152603 + 102004960 AGCD01066997;GBDJ01395605;XM_005408666;XM_005408667;XM_013506834;XM_013506835;XM_013506836;XR_264489 XP_005408723;XP_005408724;XP_013362288;XP_013362289;XP_013362290 MODEL 8799605 protein-coding Slc4a3 solute carrier family 4 member 3 ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); enzyme binding (ortholog); INVOLVED IN bicarbonate transport (ortholog); cardiac conduction (ortholog); pH reduction (ortholog); ASSOCIATED WITH genetic disease (ortholog); heart disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955453 13846444 13859707 - 102028157 AGCD01044854;GBCE01154397;XM_005395505;XM_005395506;XM_005395507;XM_013519939;XM_013519940 XP_005395562;XP_005395563;XP_005395564;XP_013375393;XP_013375394 MODEL 39131742 snorna SNORA70 Small nucleolar RNA SNORA70 8876793 ncrna LOC102024368 uncharacterized LOC102024368 NW_004955431 15852819 15857933 + 102024368 AGCD01030364;GBDF01280634;XR_261481 MODEL 8934237 protein-coding LOC102019103 uncharacterized LOC102019103 NW_004955528 1074125 1078875 - 102019103 AGCD01069550;GBDF01306990;XM_005409996;XR_001231983 XP_005410053 MODEL 8769994 protein-coding Plac1 placenta enriched 1 INVOLVED IN placenta development (ortholog); spongiotrophoblast layer developmental growth (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955473 264265 415616 + 102023583 AGCD01053834;AGCD01053835;AGCD01053836;GBDF01249559;XM_005401198;XM_013523053 XP_005401255;XP_013378507 MODEL 39133485 snrna U4 U4 spliceosomal RNA 9011577 protein-coding LOC102003714 chromosome unknown open reading frame, human C2orf88 ASSOCIATED WITH immunodeficiency 31B (ortholog); juvenile rheumatoid arthritis (ortholog); myostatin-related muscle hypertrophy (ortholog) NW_004955403 8797416 8847431 - 102003714 AGCD01001889;AGCD01001890;AGCD01001891;AGCD01001892;AGCD01001893;AGCD01001894;AGCD01001895;GBDF01008336;XM_005373308;XM_005373309;XM_005373311 XP_005373365;XP_005373366;XP_005373368 MODEL 8793435 protein-coding Pmm1 phosphomannomutase 1 ENCODES a protein that exhibits phosphomannomutase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); mannose metabolic process (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); GLOBAL DEVELOPMENTAL DELAY, ABSENT OR HYPOPLASTIC CORPUS CALLOSUM, AND DYSMORPHIC FACIES (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); neuronal cell body (ortholog) NW_004955413 27090291 27097088 - 102020552 AGCD01014492;GBDI01127252;XM_005379355 XP_005379412 MODEL 8758605 pseudo LOC102024369 mitochondrial import receptor subunit TOM20 homolog pseudogene NW_004955432 8593440 8593852 + 102024369 AGCD01030884 MODEL 8778741 protein-coding Engase endo-beta-N-acetylglucosaminidase ENCODES a protein that exhibits mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity (ortholog); INVOLVED IN protein deglycosylation (ortholog); ASSOCIATED WITH Idiopathic Generalized Epilepsy (ortholog); pityriasis rubra pilaris (ortholog) NW_004955506 3647302 3658676 - 102025928 AGCD01065318;GBDJ01312297;XM_005407343;XM_013506115 XP_005407400;XP_013361569 MODEL 8926264 protein-coding Oxsm 3-oxoacyl-ACP synthase, mitochondrial ENCODES a protein that exhibits 3-oxoacyl-[acyl-carrier-protein] synthase activity (ortholog); INVOLVED IN acyl-CoA metabolic process (ortholog); medium-chain fatty acid biosynthetic process (ortholog); short-chain fatty acid biosynthetic process (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955430 17644800 17661097 + 102014075 AGCD01029670;AGCD01029671;GBCE01010104;XM_005387492;XM_005387494;XM_005387495;XM_013515677 XP_005387549;XP_005387551;XP_005387552;XP_013371131 MODEL 8720025 protein-coding Puf60 poly(U) binding splicing factor 60 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); CHARGE syndrome (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); FOUND IN cell junction (ortholog); nucleoplasm (ortholog) NW_004955454 2482968 2497339 - 102014866 AGCD01045022;GBDK01022705;XM_005395816;XM_005395817;XM_005395818;XM_013520058;XM_013520059;XM_013520060 XP_005395873;XP_005395874;XP_005395875;XP_013375512;XP_013375513;XP_013375514 MODEL 8753374 protein-coding Snx6 sorting nexin 6 ENCODES a protein that exhibits dynactin binding (ortholog); protein homodimerization activity (ortholog); type I transforming growth factor beta receptor binding (ortholog); INVOLVED IN cellular response to amyloid-beta (ortholog); cellular response to epidermal growth factor stimulus (ortholog); intracellular protein transport (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); FOUND IN cytoplasm (ortholog); early endosome membrane (ortholog); endosome (ortholog) NW_004955409 26323940 26353675 + 102006748 AGCD01010173;AGCD01010174;AGCD01010175;AGCD01010176;GBCQ01034883;GBDK01020668;XM_005376940 XP_005376997 MODEL 8699819 protein-coding Smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 ENCODES a protein that exhibits N-acetyltransferase activity (ortholog); nuclear receptor binding (ortholog); RNA binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); negative regulation of DNA-templated transcription (ortholog); neurogenesis (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Coffin-Siris syndrome (ortholog); Coffin-Siris syndrome 5 (ortholog); FOUND IN nBAF complex (ortholog); npBAF complex (ortholog); nucleoplasm (ortholog) NW_004955451 15129619 15147487 - 102016124 AGCD01043596;AGCD01043597;GBDF01044017;GBDK01004228;XM_005394363 XP_005394420 MODEL 8844016 protein-coding Btbd9 BTB domain containing 9 INVOLVED IN adult locomotory behavior (ortholog); circadian behavior (ortholog); circadian sleep/wake cycle, non-REM sleep (ortholog); ASSOCIATED WITH intellectual disability (ortholog); restless legs syndrome (ortholog); FOUND IN glutamatergic synapse (ortholog) NW_004955437 4765234 5145033 + 102015147 AGCD01034370;AGCD01034371;AGCD01034372;AGCD01034373;AGCD01034374;AGCD01034375;AGCD01034376;AGCD01034377;AGCD01034378;GBDF01043958;XM_005390124;XM_013516988 XP_005390181;XP_013372442 MODEL 39131598 snorna SNORD42 Small nucleolar RNA SNORD42 8844099 protein-coding Pou2af1 POU class 2 homeobox associating factor 1 ENCODES a protein that exhibits DNA binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN cellular response to virus (ortholog); germinal center B cell differentiation (ortholog); positive regulation of interleukin-6 production (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); Carney-Stratakis syndrome (ortholog); FOUND IN RNA polymerase II transcription regulator complex (ortholog) NW_004955412 13131229 13167150 - 102016035 AGCD01012829;GBDI01222451;XM_005378068;XM_005378069;XM_005378070;XM_005378071;XM_005378072;XM_013511006;XM_013511007 XP_005378125;XP_005378126;XP_005378127;XP_005378128;XP_005378129;XP_013366460;XP_013366461 MODEL 8865639 protein-coding LOC102011892 olfactory receptor 9G4 NW_004955511 1843967 1844917 - 102011892 AGCD01066381;XM_005407980 XP_005408037 MODEL 8776199 protein-coding Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component ENCODES a protein that exhibits single-stranded DNA binding (ortholog); INVOLVED IN blastocyst growth (ortholog); chromatin organization (ortholog); endodermal cell fate commitment (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); dilated cardiomyopathy (ortholog); FOUND IN Cdc73/Paf1 complex (ortholog); nucleolus (ortholog) NW_004955416 8237439 8293802 + 102007761 AGCD01017038;AGCD01017039;AGCD01017040;GBDF01090358;XM_005381285;XM_013512486 XP_005381342;XP_013367940 MODEL 9040055 pseudo LOC102023315 solute carrier family 35 member F2 pseudogene NW_004955897 4701 11205 - 102023315 AGCD01078609;AGCD01078610 MODEL 8755629 protein-coding Parva parvin alpha ENCODES a protein that exhibits actin binding (ortholog); protein kinase inhibitor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin-mediated cell contraction (ortholog); cell adhesion (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH intellectual disability (ortholog); substance-related disorder (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955414 27813745 27960743 + 102014554 AGCD01015664;AGCD01015665;AGCD01015666;AGCD01015667;AGCD01015668;AGCD01015669;AGCD01015670;AGCD01015671;GBBH01100660;XM_005380302 XP_005380359 MODEL 9020960 protein-coding LOC102021619 alcohol dehydrogenase class-3 NW_004955405 9311270 9327919 - 102021619 AGCD01004768;AGCD01004769;GBCQ01008804;XM_005374293 XP_005374350 MODEL 39131741 snorna SNORA70 Small nucleolar RNA SNORA70 8811038 protein-coding LOC102005501 chloride channel protein ClC-Ka NW_004955527 2203583 2213969 - 102005501 AGCD01069424;GBCQ01008207;XM_005409849;XM_005409850;XM_013507416 XP_005409906;XP_005409907;XP_013362870 MODEL 9012636 protein-coding Serpinf2 serpin family F member 2 ENCODES a protein that exhibits endopeptidase inhibitor activity (ortholog); protease binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN blood vessel morphogenesis (ortholog); collagen fibril organization (ortholog); maintenance of blood vessel diameter homeostasis by renin-angiotensin (ortholog); PARTICIPATES IN fibrinolysis pathway; ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); alpha-2-plasmin inhibitor deficiency (ortholog); coronary artery disease (ortholog); FOUND IN cell surface (ortholog); extracellular space (ortholog); fibrinogen complex (ortholog) NW_004955481 1441262 1449078 - 102016267 AGCD01056832;GBCQ01033980;XM_005402606;XM_005402607 XP_005402663;XP_005402664 MODEL 10111423 protein-coding LOC106147038 major allergen Can f 1-like NW_004955513 4079061 4083743 + 106147038 AGCD01066914;AGCD01066915;GBBH01002645;XM_013506578 XP_013362032 MODEL 39133486 snrna U4 U4 spliceosomal RNA 8953676 protein-coding Slc26a1 solute carrier family 26 member 1 ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); oxalate transmembrane transporter activity (ortholog); solute:inorganic anion antiporter activity (ortholog); INVOLVED IN chloride transport (ortholog); oxalate transport (ortholog); sulfate transmembrane transport (ortholog); ASSOCIATED WITH calcium oxalate nephrolithiasis (ortholog); Calcium Oxalate Nephrolithiasis 1 (ortholog); cherubism (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955514 476062 484710 - 102011141 AGCD01067012;GBCQ01036206;XM_005408685;XM_013506832;XM_013506833 XP_005408742;XP_013362286;XP_013362287 MODEL 8914738 protein-coding Rasgrp1 RAS guanyl releasing protein 1 ENCODES a protein that exhibits calcium ion binding (ortholog); diacylglycerol binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); B cell activation (ortholog); B cell proliferation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955416 5494030 5561608 - 102009602 AGCD01016914;GBCE01059250;GBDK01242028;XM_013512606 XP_013368060 MODEL 8974701 pseudo LOC102008035 epimerase family protein SDR39U1 pseudogene NW_004955548 325489 327240 - 102008035 AGCD01072330 MODEL 8852406 protein-coding Tpst1 tyrosylprotein sulfotransferase 1 ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein-tyrosine sulfotransferase activity (ortholog); INVOLVED IN peptidyl-tyrosine sulfation (ortholog); post-translational protein modification (ortholog); ASSOCIATED WITH argininosuccinic aciduria (ortholog); autism spectrum disorder (ortholog); colorectal adenocarcinoma (ortholog); FOUND IN Golgi lumen (ortholog); Golgi membrane (ortholog); trans-Golgi network (ortholog) NW_004955456 8523362 8616891 + 102006316 AGCD01046488;AGCD01046489;AGCD01046490;AGCD01046491;AGCD01046492;AGCD01046493;AGCD01046494;AGCD01046495;AGCD01046496;GBBH01101451;GBDI01220614;XM_005396711;XM_005396714;XM_013520566 XP_005396768;XP_005396771;XP_013376020 MODEL 8763934 protein-coding Srpk3 SRSF protein kinase 3 ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN muscle tissue development (ortholog); protein phosphorylation (ortholog); skeletal muscle tissue development (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955580 496447 500709 + 102018243 AGCD01075607;GBCB01002736;XM_005414149;XM_005414150 XP_005414206;XP_005414207 MODEL 8772321 protein-coding Timmdc1 translocase of inner mitochondrial membrane domain containing 1 ASSOCIATED WITH Leigh disease (ortholog); nuclear type mitochondrial complex I deficiency 1 (ortholog); nuclear type mitochondrial complex I deficiency 31 (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955427 19208029 19234763 + 102018005 AGCD01027360;AGCD01027361;AGCD01027362;GBDF01223947;XM_005386443;XM_013515089 XP_005386500;XP_013370543 MODEL 8809822 pseudo LOC102010670 ADP-ribosylation factor-like protein 8B pseudogene NW_004955455 5770199 5771659 - 102010670 AGCD01045751 MODEL 8838738 protein-coding Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit ENCODES a protein that exhibits identical protein binding (ortholog); tRNA (adenine(9)-N1)-methyltransferase activity (ortholog); tRNA (guanosine(9)-N1)-methyltransferase activity (ortholog); INVOLVED IN mitochondrial RNA 5'-end processing (ortholog); mitochondrial tRNA 3'-end processing (ortholog); mitochondrial tRNA 5'-end processing (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 30 (ortholog); mitochondrial metabolism disease (ortholog); FOUND IN mitochondrial nucleoid (ortholog); mitochondrial ribonuclease P complex (ortholog); mitochondrion (ortholog) NW_004955427 3133225 3137070 + 102028659 AGCD01026918;GBCB01042255;XM_005386322;XM_005386323;XM_013515081 XP_005386379;XP_005386380;XP_013370535 MODEL 8738542 pseudo LOC102012693 splicing factor, proline- and glutamine-rich pseudogene NW_004955442 15809374 15820619 - 102012693 AGCD01037879;XR_262171 MODEL 9025237 protein-coding LOC102011061 olfactory receptor 7G2-like NW_004955563 307152 309101 - 102011061 AGCD01074060;XM_013509132;XM_013509133 XP_013364586;XP_013364587 MODEL 8993790 protein-coding Rab44 RAB44, member RAS oncogene family INVOLVED IN histamine secretion by mast cell (ortholog); histamine secretion mediated by IgE immunoglobulin (ortholog); mast cell degranulation (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog) NW_004955437 6223281 6250068 - 102025839 AGCD01034422;AGCD01034423;AGCD01034424;GBBH01203108;XM_005389639;XM_005389640;XM_005389641;XM_005389642;XM_005389643;XM_005389644;XM_005389645;XM_013517131;XM_013517132 XP_005389696;XP_005389697;XP_005389698;XP_005389699;XP_005389700;XP_005389701;XP_005389702;XP_013372585;XP_013372586 MODEL 8847508 pseudo LOC102018692 coiled-coil domain-containing protein 152-like NW_004955457 9051097 9052057 + 102018692 AGCD01046927 MODEL 9028476 protein-coding Lig4 DNA ligase 4 ENCODES a protein that exhibits AMP binding (ortholog); ATP binding (ortholog); DNA binding (ortholog); INVOLVED IN base-excision repair (ortholog); cellular response to ionizing radiation (ortholog); cellular response to lithium ion (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); colorectal cancer (ortholog); DNA ligase IV deficiency (ortholog); FOUND IN condensed chromosome (ortholog); DNA ligase IV complex (ortholog); DNA-dependent protein kinase-DNA ligase 4 complex (ortholog) NW_004955404 3606077 3615193 + 102024416 AGCD01003279;GBDF01038894;XM_005374013;XM_005374014;XM_013515840;XM_013515843;XM_013515847;XM_013515850 XP_005374070;XP_005374071;XP_013371294;XP_013371297;XP_013371301;XP_013371304 MODEL 10253480 ncrna LOC106149870 uncharacterized LOC106149870 NW_004955456 279654 282542 + 106149870 AGCD01046202;GBDI01237842;XR_001236318 MODEL 8925412 protein-coding LOC102006931 uncharacterized LOC102006931 NW_004955423 27013477 27045496 - 102006931 AGCD01024112;AGCD01024113;GBCB01041473;GBCB01041476;XM_013514386 XP_013369840 MODEL 8991588 protein-coding Prox1 prospero homeobox 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA binding domain binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN acinar cell differentiation (ortholog); aorta smooth muscle tissue morphogenesis (ortholog); atrial cardiac muscle tissue morphogenesis (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); gastrointestinal stromal tumor (ortholog); Neoplasm Metastasis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955406 3715140 3770019 - 102012922 AGCD01005674;GBCQ01174906;XM_005374720;XM_005374721;XM_005374722;XM_005374723;XM_013519987 XP_005374777;XP_005374778;XP_005374779;XP_005374780;XP_013375441 MODEL 8803140 protein-coding Slc4a4 solute carrier family 4 member 4 ENCODES a protein that exhibits identical protein binding (ortholog); sodium:bicarbonate symporter activity (ortholog); symporter activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); establishment of localization in cell (ortholog); metanephric proximal tubule development (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); cataract (ortholog); cholangiocarcinoma (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); cytosol (ortholog) NW_004955447 1599986 1900791 - 102021061 AGCD01040522;AGCD01040523;GBCQ01094065;XM_005392771;XM_005392772;XM_005392773;XM_013518567 XP_005392828;XP_005392829;XP_005392830;XP_013374021 MODEL 39131740 snorna SNORA70 Small nucleolar RNA SNORA70 8719785 pseudo LOC102008440 high mobility group protein B1-like NW_004955427 3052920 3061332 - 102008440 AGCD01026912 MODEL 8948910 protein-coding Parvb parvin beta INVOLVED IN actin cytoskeleton organization (ortholog); cell projection assembly (ortholog); establishment or maintenance of cell polarity regulating cell shape (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); focal adhesion (ortholog); lamellipodium (ortholog) NW_004955413 28962614 29020430 + 102021228 AGCD01014573;GBCQ01121909;XM_005379454 XP_005379511 MODEL 9018814 protein-coding Psmd10 proteasome 26S subunit, non-ATPase 10 INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of DNA damage response, signal transduction by p53 class mediator (ortholog); negative regulation of MAPK cascade (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Charcot-Marie-Tooth disease type X (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955490 7825202 7832347 + 102014910 AGCD01060265;GBCE01045828;XM_005404680 XP_005404737 MODEL 8772045 protein-coding Tsc22d4 TSC22 domain family member 4 INVOLVED IN glucose homeostasis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); neuron cellular homeostasis (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); nucleus (ortholog) NW_004955573 414984 425480 + 102023089 AGCD01074976;AGCD01074977;GBDK01081440;XM_005413727;XM_013509480 XP_005413784;XP_013364934 MODEL 10118229 protein-coding LOC106147040 uncharacterized LOC106147040 NW_004955513 3677122 3679962 - 106147040 AGCD01066908;GBDK01267496;XM_013506586;XM_013506587 XP_013362040;XP_013362041 MODEL 8849562 protein-coding Enho energy homeostasis associated ENCODES a protein that exhibits hormone activity (ortholog); INVOLVED IN positive regulation of Notch signaling pathway (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955472 1597488 1599274 + 102028290 AGCD01053403;GBCB01042932;GBDI01326897;XM_005401075 XP_005401132 MODEL 8961889 protein-coding LOC102010318 seminal vesicle major clotting proteins-like NW_004955445 12149377 12156385 - 102010318 AGCD01039740;AGCD01039741;AGCD01039742;XM_005392442 XP_005392499 MODEL 39133487 snrna U4 U4 spliceosomal RNA 8784150 protein-coding Pde4d phosphodiesterase 4D ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-nucleotide phosphodiesterase activity (ortholog); ATPase binding (ortholog); INVOLVED IN adrenergic receptor signaling pathway (ortholog); cAMP/PKA signal transduction (ortholog); cellular response to cAMP (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH acrodysostosis (ortholog); Acrodysostosis 2, with or without Hormone Resistance (ortholog); amphetamine abuse (ortholog); FOUND IN calcium channel complex (ortholog); centrosome (ortholog); cilium (ortholog) NW_004955446 7914326 9252527 + 102006721 AGCD01040133;AGCD01040134;AGCD01040135;AGCD01040136;AGCD01040137;AGCD01040138;AGCD01040139;AGCD01040140;AGCD01040141;AGCD01040142;AGCD01040143;AGCD01040144;AGCD01040145;AGCD01040146;AGCD01040147;AGCD01040148;AGCD01040149;AGCD01040150;AGCD01040151;AGCD01040152;AGCD01040153;AGCD01040154;AGCD01040155;AGCD01040156;AGCD01040157;GBDI01327844;XM_005392663;XM_005392664;XM_005392665;XM_005392667;XM_005392668;XM_005392669;XM_005392670;XM_013518413;XM_013518414 XP_005392720;XP_005392721;XP_005392722;XP_005392724;XP_005392725;XP_005392726;XP_005392727;XP_013373867;XP_013373868 MODEL 8768937 protein-coding LOC102006557 putative olfactory receptor 2W6 NW_004955465 13441807 13444827 + 102006557 AGCD01050609;XM_005399012 XP_005399069 MODEL 8904635 protein-coding LOC102012694 solute carrier organic anion transporter family member 5A1 NW_004955444 9855499 9886614 + 102012694 AGCD01038995;GBCQ01074693;XM_013518225 XP_013373679 MODEL 8724809 protein-coding Pou2af2 POU class 2 homeobox associating factor 2 ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); transcription coactivator activity (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); FOUND IN nucleus (ortholog) NW_004955412 13076854 13079095 + 102015300 AGCD01012827;AGCD01012828;GBCE01163326;XM_013511187 XP_013366641 MODEL 8875385 protein-coding Trmt11 tRNA methyltransferase 11 homolog ENCODES a protein that exhibits tRNA (guanine(10)-N2)-methyltransferase activity (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Colonic Neoplasms (ortholog); Esophageal Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); tRNA (m2G10) methyltransferase complex (ortholog) NW_004955436 7274848 7318762 + 102004850 AGCD01033704;GBDI01353599;XM_005389162;XM_005389163;XM_013516690 XP_005389219;XP_005389220;XP_013372144 MODEL 8961483 ncrna LOC102018695 uncharacterized LOC102018695 NW_004955458 9885317 9887026 - 102018695 AGCD01047664;GBDK01334184;XR_262992 MODEL 9027035 protein-coding LOC102023317 keratin-associated protein 2-1-like NW_004955451 15467590 15468256 - 102023317 AGCD01043610;XM_005394384 XP_005394441 MODEL 8910170 protein-coding LOC102003715 prolactin-like NW_004955634 57648 64392 - 102003715 AGCD01077606;XM_005415042 XP_005415099 MODEL 8943102 ncrna LOC102024370 uncharacterized LOC102024370 NW_004955514 4624748 4630551 + 102024370 AGCD01067139;GBDF01039693;XR_264512 MODEL 8906288 ncrna LOC102006934 uncharacterized LOC102006934 NW_004955425 7579288 7588814 + 102006934 AGCD01025389;GBDF01234416;XR_261134 MODEL 8772561 pseudo LOC102008442 26S proteasome non-ATPase regulatory subunit 14 pseudogene NW_004955428 13615029 13616146 - 102008442 AGCD01027959 MODEL 8827547 ncrna LOC102023320 uncharacterized LOC102023320 NW_004955404 3357684 3367138 + 102023320 AGCD01003270;GBDF01040966;XR_001235134;XR_259295 MODEL 8821412 protein-coding Pfdn5 prefoldin subunit 5 ENCODES a protein that exhibits amyloid-beta binding (ortholog); unfolded protein binding (ortholog); INVOLVED IN negative regulation of amyloid fibril formation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN cytosol (ortholog); intermediate filament cytoskeleton (ortholog); prefoldin complex (ortholog) NW_004955458 555971 559927 + 102018261 AGCD01047133;AGCD01047134;GBBH01030586;XM_005397168 XP_005397225 MODEL 8819520 pseudo LOC102009561 transcription elongation regulator 1 pseudogene NW_004955402 134030 135953 + 102009561 AGCD01000008 MODEL 8770191 protein-coding Rasgrp2 RAS guanyl releasing protein 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH genetic disease (ortholog); hemorrhagic disease (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955422 20426241 20440540 + 102003249 AGCD01023080;AGCD01023081;GBDJ01030510;GBDK01273984;XM_005384568 XP_005384625 MODEL 8897014 pseudo LOC102003718 N-alpha-acetyltransferase 50 pseudogene NW_004955988 4743 5256 + 102003718 AGCD01078815 MODEL 8965390 protein-coding Smc1a structural maintenance of chromosomes 1A ENCODES a protein that exhibits chromatin binding (ortholog); mediator complex binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN meiotic cell cycle (ortholog); mitotic spindle assembly (ortholog); response to DNA damage checkpoint signaling (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Atkin Syndrome (ortholog); autistic disorder (ortholog); FOUND IN cohesin complex (ortholog); cytosol (ortholog); kinetochore (ortholog) NW_004955475 421472 468286 - 102014447 AGCD01054690;AGCD01054691;AGCD01054692;GBDF01222516;XM_005401492;XM_005401493;XM_013502820 XP_005401549;XP_005401550;XP_013358274 MODEL 8855658 ncrna LOC102019105 uncharacterized LOC102019105 NW_004955436 21653886 21682147 + 102019105 AGCD01034066;AGCD01034067;AGCD01034068;GBDF01020993;XR_001234982;XR_001234983;XR_001234984 MODEL 8857539 protein-coding LOC102008036 myelin P2 protein NW_004955444 162419 167955 + 102008036 AGCD01038653;GBBH01135207;XM_005392055 XP_005392112 MODEL 8799652 protein-coding Pum1 pumilio RNA binding family member 1 ENCODES a protein that exhibits miRNA binding (ortholog); mRNA 3'-UTR binding (ortholog); RNA binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); miRNA processing (ortholog); mRNA destabilization (ortholog); ASSOCIATED WITH cerebellar ataxia type 47 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Developmental Disabilities (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoplasmic stress granule (ortholog) NW_004955452 9487725 9623565 - 102004033 AGCD01044238;AGCD01044239;AGCD01044240;AGCD01044241;AGCD01044242;AGCD01044243;AGCD01044244;AGCD01044245;AGCD01044246;AGCD01044247;GBCB01038506;XM_005395006;XM_005395007;XM_005395009;XM_005395011;XM_005395013;XM_005395014;XM_013519591;XM_013519592;XM_013519593;XM_013519594;XM_013519595;XM_013519596;XM_013519597 XP_005395063;XP_005395064;XP_005395066;XP_005395068;XP_005395070;XP_005395071;XP_013375045;XP_013375046;XP_013375047;XP_013375048;XP_013375049;XP_013375050;XP_013375051 MODEL 8853252 protein-coding ND2 NADH dehydrogenase subunit 2 MT 3887 4930 + 15822220 JX312692 AFQ55778;YP_008080746 REVIEWED 8758332 pseudo LOC102015642 60S ribosomal protein L31 pseudogene NW_004955493 5270440 5279258 - 102015642 AGCD01061061 MODEL 8966539 protein-coding LOC102011064 transmembrane protease serine 11D NW_004955447 4999930 5082159 + 102011064 AGCD01040736;AGCD01040737;AGCD01040738;AGCD01040739;AGCD01040740;AGCD01040741;GBDI01165135;XM_013518471 XP_013373925 MODEL 8917659 ncrna LOC102021620 uncharacterized LOC102021620 NW_004955405 19288876 19336365 - 102021620 AGCD01005034;AGCD01005035;GBCB01087858;XR_001235414 MODEL 8746012 protein-coding Srpra SRP receptor subunit alpha ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog); FOUND IN membrane (ortholog); signal recognition particle receptor complex (ortholog) NW_004955412 27287359 27293362 - 102003852 AGCD01013233;GBDF01049869;XM_005378499 XP_005378556 MODEL 8896877 protein-coding Plac8 placenta associated 8 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); defense response to bacterium (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH Chlamydiaceae Infections (ortholog); chromosome 4q21 deletion syndrome (ortholog); Escherichia Coli Infections (ortholog) NW_004955474 6518459 6533251 + 102030066 AGCD01054481;GBBH01004306;XM_005401386 XP_005401443 MODEL 9027412 ncrna LOC102017553 uncharacterized LOC102017553 NW_004955411 11887043 11891142 - 102017553 AGCD01011833;GBDF01079416;XR_259932 MODEL 10339767 ncrna LOC106149871 uncharacterized LOC106149871 NW_004955456 14984755 14986649 + 106149871 AGCD01046659;GBDK01228626;XR_001236321 MODEL 8993522 protein-coding Lim2 lens intrinsic membrane protein 2 INVOLVED IN camera-type eye development (ortholog); lens development in camera-type eye (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); cataract (ortholog); cataract 19 multiple types (ortholog); FOUND IN vesicle (ortholog) NW_004955558 1019709 1024375 + 102012809 AGCD01073411;GBDK01111107;XM_013508909 XP_013364363 MODEL 8888144 protein-coding LOC102012695 olfactory receptor 2Z1 ASSOCIATED WITH autistic disorder (ortholog); prostate cancer (ortholog) NW_004955563 779884 780825 - 102012695 AGCD01074088;XM_005413204 XP_005413261 MODEL 8966592 protein-coding Pou2af3 POU class 2 homeobox associating factor 3 ENCODES a protein that exhibits DNA binding (ortholog); transcription coactivator activity (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); Carney-Stratakis syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955412 13090206 13098642 + 102012297 AGCD01012829;GBBH01143846;GBCE01075437;XM_013511188 XP_013366642 MODEL 8854654 protein-coding Pmm2 phosphomannomutase 2 ENCODES a protein that exhibits phosphomannomutase activity (ortholog); INVOLVED IN GDP-D-mannose biosynthetic process from fructose-6-phosphate (ortholog); GDP-mannose biosynthetic process (ortholog); GDP-mannose biosynthetic process from mannose (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); cerebellar hypoplasia (ortholog); cerebral palsy (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955442 9390789 9411722 - 102016753 AGCD01037679;GBBH01090482;XM_005391214;XM_005391216;XM_005391217 XP_005391271;XP_005391273;XP_005391274 MODEL 8842478 protein-coding Trmt112 tRNA methyltransferase activator subunit 11-2 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein methyltransferase activity (ortholog); tRNA methyltransferase activator activity (ortholog); INVOLVED IN peptidyl-glutamine methylation (ortholog); positive regulation of rRNA processing (ortholog); rRNA (guanine-N7)-methylation (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); multiple endocrine neoplasia type 1 (ortholog); FOUND IN nucleoplasm (ortholog); perinuclear region of cytoplasm (ortholog); protein-containing complex (ortholog) NW_004955422 20767599 20768505 + 102012548 AGCD01023086;GBDF01007908;XM_005384605 XP_005384662 MODEL 8730436 ncrna LOC102024372 uncharacterized LOC102024372 NW_004955433 3738370 3744365 + 102024372 AGCD01031433;GBDF01008075;XR_001234706;XR_001234707 MODEL 8872076 protein-coding LOC102006937 olfactory receptor 5B3-like NW_004955511 3259255 3266476 - 102006937 AGCD01066452;XM_013506400 XP_013361854 MODEL 8922879 protein-coding LOC102011894 olfactory receptor 5AS1-like NW_004955511 949994 950932 + 102011894 AGCD01066346;XM_005408219 XP_005408276 MODEL 8901444 ncrna LOC102010321 uncharacterized LOC102010321 NW_004955402 42833311 42840895 + 102010321 AGCD01001049;GBCB01051675;XR_259085 MODEL 39133488 snrna U4 U4 spliceosomal RNA 8720989 pseudo LOC102008445 proteasome assembly chaperone 1-like NW_004955431 13381828 13382937 - 102008445 AGCD01030304 MODEL 8769583 protein-coding Rtf2 replication termination factor 2 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN cellular response to hydroxyurea (ortholog); regulation of DNA stability (ortholog); FOUND IN replication fork (ortholog) NW_004955445 2729658 2764447 - 102009331 AGCD01039364;GBDF01005514;XM_005392267 XP_005392324 MODEL 8928493 pseudo LOC102006560 histone-binding protein RBBP4 pseudogene NW_004955412 4399982 4403024 - 102006560 AGCD01012596 MODEL 8971807 protein-coding Pde4dip phosphodiesterase 4D interacting protein ENCODES a protein that exhibits enzyme binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN astral microtubule organization (ortholog); positive regulation of microtubule nucleation (ortholog); protein-containing complex assembly (ortholog); ASSOCIATED WITH cataract 46 juvenile-onset (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN centrosome (ortholog); cortical microtubule plus-end (ortholog); cytoplasm (ortholog) NW_004955568 1321053 1546351 - 102017074 AGCD01074545;AGCD01074546;AGCD01074547;GBDI01077273;XM_005413474;XM_005413475;XM_013509336;XM_013509337;XM_013509339;XM_013509340;XM_013509341;XM_013509342;XM_013509343;XM_013509344;XM_013509345;XM_013509346;XM_013509347;XM_013509348;XR_265041 XP_005413531;XP_005413532;XP_013364790;XP_013364791;XP_013364793;XP_013364794;XP_013364795;XP_013364796;XP_013364797;XP_013364798;XP_013364799;XP_013364800;XP_013364801;XP_013364802 MODEL 8729739 protein-coding Reep1 receptor accessory protein 1 ENCODES a protein that exhibits microtubule binding (ortholog); olfactory receptor binding (ortholog); INVOLVED IN endoplasmic reticulum tubular network organization (ortholog); protein insertion into membrane (ortholog); regulation of intracellular transport (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); autosomal dominant distal hereditary motor neuronopathy 12 (ortholog); autosomal dominant distal hereditary motor neuronopathy 5 (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955424 1369490 1425611 + 102018107 AGCD01024237;GBCE01013291;XM_013514719 XP_013370173 MODEL 8941779 protein-coding Rab4a RAB4A, member RAS oncogene family ENCODES a protein that exhibits ATPase activator activity (ortholog); ATPase binding (ortholog); GDP binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); neurotransmitter receptor transport postsynaptic membrane to endosome (ortholog); protein transport (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; platelet-derived growth factor signaling pathway; Rab family mediated signaling pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); extracellular exosome (ortholog) NW_004955492 8715252 8743432 - 102018840 AGCD01060825;GBDF01087629;GBDJ01234437;XM_005405009 XP_005405066 MODEL 9063251 pseudo LOC102019109 mortality factor 4-like protein 1 pseudogene NW_004955439 2501307 2503035 - 102019109 AGCD01035651 MODEL 8861157 ncrna LOC102021621 uncharacterized LOC102021621 NW_004955405 29311366 29324168 - 102021621 AGCD01005251;GBDF01207441;XR_259409 MODEL 8981889 protein-coding Prox2 prospero homeobox 2 ASSOCIATED WITH intellectual disability (ortholog) NW_004955523 697475 708675 + 102016410 AGCD01068476;GBDF01279087;XM_005409386 XP_005409443 MODEL 10087477 ncrna LOC106149872 uncharacterized LOC106149872 NW_004955456 14682365 14698386 - 106149872 AGCD01046650;GBCQ01113538;XR_001236322;XR_001236323 MODEL 39131599 snorna SNORD42 Small nucleolar RNA SNORD42 8876101 protein-coding Psmd11 proteasome 26S subunit, non-ATPase 11 INVOLVED IN proteasome assembly (ortholog); stem cell differentiation (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog); proteasome regulatory particle (ortholog) NW_004955481 7364543 7402770 + 102027185 AGCD01057061;AGCD01057062;AGCD01057063;GBDF01050146;XM_005402826;XM_013503426 XP_005402883;XP_013358880 MODEL 8796312 protein-coding LOC102017554 stromelysin-1 NW_004955412 6019457 6027604 - 102017554 AGCD01012664;GBDJ01341055;XM_005377987 XP_005378044 MODEL 8878731 protein-coding LOC102010672 uncharacterized LOC102010672 NW_004955456 8615945 8618802 + 102010672 AGCD01046495;AGCD01046496;GBDJ01224884;XM_013520516 XP_013375970 MODEL 8805802 protein-coding Timp1 TIMP metallopeptidase inhibitor 1 ENCODES a protein that exhibits cytokine activity (ortholog); metalloendopeptidase inhibitor activity (ortholog); peptidase inhibitor activity (ortholog); INVOLVED IN cartilage development (ortholog); cellular response to peptide (ortholog); cellular response to UV-A (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); adult respiratory distress syndrome (ortholog); alcoholic liver cirrhosis (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular space (ortholog) NW_004955516 507113 511360 - 102013747 AGCD01067385;GBCQ01096551;XM_005408935;XM_005408936;XM_013506915;XM_013506916 XP_005408992;XP_005408993;XP_013362369;XP_013362370 MODEL 8722159 protein-coding Enkd1 enkurin domain containing 1 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); microtubule binding (ortholog); INVOLVED IN establishment of mitotic spindle orientation (ortholog); motile cilium assembly (ortholog); non-motile cilium assembly (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); chromosome 16q22 deletion syndrome (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955484 9015744 9019781 + 102025124 AGCD01058403;GBDJ01311527;XM_005403628;XM_005403629 XP_005403685;XP_005403686 MODEL 9059924 protein-coding LOC102005505 homeobox protein ESX1-like NW_004955534 3330 9799 + 102005505 AGCD01070431;GBDF01222868;XM_005410423 XP_005410480 MODEL 39132149 snorna SNORD45A small nucleolar RNA, C/D box 45A 9015115 pseudo LOC102006938 protein kinase C iota type pseudogene NW_004955430 13260783 13262484 + 102006938 AGCD01029529 MODEL 9018750 ncrna LOC102011899 uncharacterized LOC102011899 NW_004955517 51555 54459 - 102011899 AGCD01067565;GBDK01097081;XR_264538 MODEL 8820351 ncrna LOC102008451 uncharacterized LOC102008451 NW_004955435 5691131 5736182 + 102008451 AGCD01032894;GBCQ01091899;XR_001234882 MODEL 39131739 snorna SNORA70 Small nucleolar RNA SNORA70 8942923 protein-coding LOC102006562 olfactory receptor 10J1-like NW_004955468 11188817 11189746 + 102006562 AGCD01052120;XM_013522346 XP_013377800 MODEL 8759035 protein-coding Pigh phosphatidylinositol glycan anchor biosynthesis class H INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Glycosylphosphatidylinositol Biosynthesis Defect 17 (ortholog); Leber congenital amaurosis 13 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog) NW_004955466 2601368 2616255 + 102011852 AGCD01050748;AGCD01050749;AGCD01050750;GBBH01168046;XM_005399070;XM_005399071;XM_005399072;XM_013521893;XR_263283;XR_263284 XP_005399127;XP_005399128;XP_005399129;XP_013377347 MODEL 8812891 protein-coding Plac8l1 PLAC8 like 1 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955415 7990558 8024998 + 102018489 AGCD01016060;AGCD01016061;AGCD01016062;AGCD01016063;GBDF01304882;XM_005380681;XM_005380682 XP_005380738;XP_005380739 MODEL 8708022 protein-coding Parvg parvin gamma PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog) NW_004955413 29028573 29046745 + 102021958 AGCD01014573;AGCD01014574;GBDI01080132;XM_005379457;XM_005379458;XM_005379459 XP_005379514;XP_005379515;XP_005379516 MODEL 10077044 protein-coding LOC106147041 lipocalin-1-like NW_004955513 2472464 2477658 + 106147041 AGCD01066880;GBBH01072118;XM_013506589 XP_013362043 MODEL 8722000 protein-coding LOC102019110 natural resistance-associated macrophage protein 2-like NW_004955547 1413554 1447203 - 102019110 AGCD01072222;AGCD01072223;GBDJ01084229;XM_013508457 XP_013363911 MODEL 8843210 protein-coding Lima1 LIM domain and actin binding 1 ENCODES a protein that exhibits actin filament binding (ortholog); actin monomer binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); cell migration (ortholog); cholesterol homeostasis (ortholog); PARTICIPATES IN E-cadherin signaling pathway; FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog); brush border (ortholog) NW_004955547 730152 827644 - 102015666 AGCD01072174;AGCD01072175;AGCD01072176;AGCD01072177;AGCD01072178;AGCD01072179;AGCD01072180;AGCD01072181;GBDK01135743;XM_013508484;XM_013508485;XM_013508486;XM_013508487;XM_013508488;XM_013508489 XP_013363938;XP_013363939;XP_013363940;XP_013363941;XP_013363942;XP_013363943 MODEL 9061651 protein-coding Tpst2 tyrosylprotein sulfotransferase 2 ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein-tyrosine sulfotransferase activity (ortholog); INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); peptidyl-tyrosine sulfation (ortholog); prevention of polyspermy (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); cataract 23 (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi lumen (ortholog); trans-Golgi network (ortholog) NW_004955455 1106403 1128455 - 102016778 AGCD01045568;GBBH01026338;XM_013520467;XM_013520468 XP_013375921;XP_013375922 MODEL 8779405 protein-coding Snx7 sorting nexin 7 INVOLVED IN positive regulation of autophagosome assembly (ortholog); protein transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN early endosome (ortholog) NW_004955435 3481304 3543801 + 102020604 AGCD01032788;AGCD01032789;AGCD01032790;AGCD01032791;GBCB01111236;GBCE01074188;XM_013516541 XP_013371995 MODEL 8796529 pseudo LOC102023322 lysozyme C-like NW_004955405 9648741 9653909 + 102023322 AGCD01004786 MODEL 10364405 ncrna LOC106149873 uncharacterized LOC106149873 NW_004955456 5353140 5359630 + 106149873 AGCD01046327;XR_001236324 MODEL 8909994 protein-coding LOC102024378 DNA helicase MCM9-like NW_004955436 1593994 1628221 - 102024378 AGCD01033582;GBBH01209119;GBBH01209120;XM_013516639 XP_013372093 MODEL 8983611 ncrna LOC102003724 uncharacterized LOC102003724 NW_004955452 17445620 17459241 - 102003724 AGCD01044554;AGCD01044555;GBDI01162489;XR_262704 MODEL 8997987 ncrna LOC102010678 uncharacterized LOC102010678 NW_004955410 29688647 29706211 + 102010678 AGCD01011293;GBDF01277999;XR_259884 MODEL 39133489 snrna U4 U4 spliceosomal RNA 8764700 protein-coding Rasgrp3 RAS guanyl releasing protein 3 ENCODES a protein that exhibits GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); kinase binding (ortholog); INVOLVED IN Ras protein signal transduction (ortholog); ASSOCIATED WITH head and neck squamous cell carcinoma (ortholog); hypertension (ortholog); systemic lupus erythematosus (ortholog); FOUND IN cytoplasm (ortholog); guanyl-nucleotide exchange factor complex (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955441 1679258 1786397 + 102025514 AGCD01036756;AGCD01036757;GBCE01012394;XM_005390850;XM_005390851;XM_005390852;XM_005390853;XM_005390854;XM_005390855;XM_005390856;XM_013517629 XP_005390907;XP_005390908;XP_005390909;XP_005390910;XP_005390911;XP_005390912;XP_005390913;XP_013373083 MODEL 8996298 protein-coding Ric1 RIC1 homolog, RAB6A GEF complex partner 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN cranial skeletal system development (ortholog); negative regulation of protein catabolic process (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH CATIFA Syndrome (ortholog); chromosome 9p deletion syndrome (ortholog); epilepsy (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); protein-containing complex (ortholog) NW_004955434 9675654 9770174 + 102004634 AGCD01032308;AGCD01032309;GBDK01079504;XM_005388664;XM_013516307 XP_005388721;XP_013371761 MODEL 8765697 protein-coding LOC102010322 cytochrome P450 1A2 ENCODES a protein that exhibits caffeine oxidase activity (ortholog); demethylase activity (ortholog); enzyme binding (ortholog); INVOLVED IN alkaloid metabolic process (ortholog); cellular respiration (ortholog); cellular response to cadmium ion (ortholog); PARTICIPATES IN axitinib pharmacokinetics pathway; caffeine pharmacokinetics pathway; clomipramine pharmacokinetics pathway; ASSOCIATED WITH acute kidney failure (ortholog); acute lymphoblastic leukemia (ortholog); Atrophy (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog) NW_004955450 3165107 3171894 - 102010322 AGCD01042426;GBBH01140851;XM_005393544;XM_005393545 XP_005393601;XP_005393602 MODEL 8959863 protein-coding Slc26a10p Solute carrier family 26 member 10 NW_004955458 5343188 5352194 + 102009151 AGCD01047477;AGCD01047478;AGCD01047479;AGCD01047480;GBDI01004613;XM_005397408;XM_013520907;XM_013520908 XP_005397465;XP_013376361;XP_013376362 MODEL 8792815 protein-coding Rtkn rhotekin ENCODES a protein that exhibits GTPase inhibitor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN regulation of apoptotic process (ortholog); Rho protein signal transduction (ortholog); signal transduction (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); hepatocellular carcinoma (ortholog) NW_004955424 11344504 11358344 + 102027998 AGCD01024564;GBCB01061023;XM_005385506;XM_005385507;XM_005385508;XM_005385509;XM_013514740 XP_005385563;XP_005385564;XP_005385565;XP_005385566;XP_013370194 MODEL 8768024 ncrna LOC102021625 uncharacterized LOC102021625 NW_004955454 1559046 1567112 + 102021625 AGCD01044973;GBCE01105695;XR_001236256;XR_001236257 MODEL 8746931 ncrna LOC102009563 uncharacterized LOC102009563 NW_004955403 20142634 20146416 - 102009563 AGCD01002154;XR_259188 MODEL 8936534 protein-coding Pmp22 peripheral myelin protein 22 ENCODES a protein that exhibits cytoskeletal motor activity (ortholog); protein serine/threonine kinase inhibitor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); adult locomotory behavior (ortholog); adult walking behavior (ortholog); ASSOCIATED WITH Abnormal Reflexes (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN bicellular tight junction (ortholog); cell surface (ortholog); compact myelin (ortholog) NW_004955467 2422181 2456925 + 102021226 AGCD01051310;GBBH01065423;XM_005399333;XM_005399334 XP_005399390;XP_005399391 MODEL 8768297 protein-coding Trmt12 tRNA methyltransferase 12 homolog ASSOCIATED WITH trichorhinophalangeal syndrome type I (ortholog) NW_004955540 3121570 3124371 + 102007152 AGCD01071335;GBDJ01260504;XM_005410940 XP_005410997 MODEL 8800297 protein-coding Smc1b structural maintenance of chromosomes 1B ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN meiotic cell cycle (ortholog); sister chromatid cohesion (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); intellectual disability (ortholog); myoepithelioma (ortholog); FOUND IN chromosome, centromeric region (ortholog); condensed nuclear chromosome (ortholog); cytosol (ortholog) NW_004955413 29709473 29765043 - 102005025 AGCD01014592;AGCD01014593;AGCD01014594;GBDF01007980;XM_005379490 XP_005379547 MODEL 8773035 ncrna LOC102008038 uncharacterized LOC102008038 NW_004955445 9004503 9006160 - 102008038 AGCD01039621;GBBH01065534;XR_262322 MODEL 8946897 protein-coding Enkur enkurin, TRPC channel interacting protein ENCODES a protein that exhibits calmodulin binding (ortholog); INVOLVED IN establishment of left/right asymmetry (ortholog); flagellated sperm motility (ortholog); FOUND IN 9+0 motile cilium (ortholog); 9+2 motile cilium (ortholog); acrosomal vesicle (ortholog) NW_004955429 4182507 4203275 + 102007452 AGCD01028483;GBDF01085329;XM_005386899;XM_005386900 XP_005386956;XP_005386957 MODEL 8837563 ncrna LOC102015643 uncharacterized LOC102015643 NW_004955422 29155045 29182205 + 102015643 AGCD01023379;GBCB01061039;XR_001233972;XR_001233973 MODEL 8755540 pseudo LOC102011065 60S ribosomal protein L4-like NW_004955447 17826623 17831419 + 102011065 AGCD01041137 MODEL 9010106 protein-coding Timp2 TIMP metallopeptidase inhibitor 2 ENCODES a protein that exhibits enzyme activator activity (ortholog); integrin binding (ortholog); metalloendopeptidase inhibitor activity (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); negative regulation of metallopeptidase activity (ortholog); negative regulation of mitotic cell cycle (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); Alzheimer's disease (ortholog); Brain Injuries (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); extracellular space (ortholog) NW_004955506 3769113 3812896 + 102029096 AGCD01065319;GBCE01002810;XM_005407364 XP_005407421 MODEL 9052457 protein-coding ND3 NADH dehydrogenase subunit 3 MT 9465 9810 + 15822229 JX312692 AFQ55784;YP_008080752 REVIEWED 8804403 protein-coding LOC102018698 laminin subunit beta-4 NW_004955410 12319755 12419631 - 102018698 AGCD01010852;AGCD01010853;AGCD01010854;AGCD01010855;AGCD01010856;AGCD01010857;GBDK01203911;XM_013510493 XP_013365947 MODEL 9050909 protein-coding Slc4a5 solute carrier family 4 member 5 ENCODES a protein that exhibits sodium:bicarbonate symporter activity (ortholog); INVOLVED IN cerebrospinal fluid secretion (ortholog); epithelial cell development (ortholog); mitochondrion distribution (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); Methylmalonyl-CoA Epimerase Deficiency (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955424 11426020 11537141 + 102003983 AGCD01024566;AGCD01024567;AGCD01024568;GBDF01158181;XM_005385520;XM_005385521;XM_005385522;XM_005385523;XM_013514621 XP_005385577;XP_005385578;XP_005385579;XP_005385580;XP_013370075 MODEL 8733726 protein-coding LOC102011496 RAD52 motif-containing protein 1-like NW_004957952 76 531 + 102011496 AGCD01081348;GBDJ01230466;GBDJ01230469;XM_005415236 XP_005415293 MODEL 9059226 protein-coding Btc betacellulin ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); growth factor activity (ortholog); receptor ligand activity (ortholog); INVOLVED IN apoptotic process (ortholog); cell population proliferation (ortholog); epidermal growth factor receptor signaling pathway (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH erythropoietic protoporphyria (ortholog); Experimental Diabetes Mellitus (ortholog); Glucagonoma (ortholog); FOUND IN extracellular space (ortholog) NW_004955474 895573 946152 - 102007545 AGCD01054231;AGCD01054232;GBCB01020646;XM_005401314 XP_005401371 MODEL 9016314 protein-coding Pde5a phosphodiesterase 5A ENCODES a protein that exhibits 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); 3',5'-cyclic-nucleotide phosphodiesterase activity (ortholog); cGMP binding (ortholog); INVOLVED IN cGMP catabolic process (ortholog); cGMP metabolic process (ortholog); negative regulation of cardiac muscle contraction (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); Experimental Diabetes Mellitus (ortholog); Hearing Loss (ortholog) NW_004955428 20785497 20904717 + 102022312 AGCD01028127;AGCD01028128;GBCQ01048848;XM_005386794;XM_005386796 XP_005386851;XP_005386853 MODEL 8895246 protein-coding Smc2 structural maintenance of chromosomes 2 ENCODES a protein that exhibits chromatin binding (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN kinetochore organization (ortholog); meiotic chromosome condensation (ortholog); meiotic chromosome segregation (ortholog); ASSOCIATED WITH colon adenocarcinoma (ortholog); colorectal cancer (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN condensed chromosome (ortholog); condensed nuclear chromosome (ortholog); condensin complex (ortholog) NW_004955419 22245843 22294508 - 102005808 AGCD01020299;GBDK01433995;XM_005382790 XP_005382847 MODEL 39131738 snorna SNORA70 Small nucleolar RNA SNORA70 8906226 protein-coding Rab4b RAB4B, member RAS oncogene family ENCODES a protein that exhibits GTPase activity (ortholog); INVOLVED IN D-glucose import (ortholog); early endosome to Golgi transport (ortholog); endosomal vesicle fusion (ortholog); ASSOCIATED WITH Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog); FOUND IN early endosome membrane (ortholog); insulin-responsive compartment (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955578 559029 568966 - 102004532 AGCD01075489;GBDI01109935;XM_005414016;XM_005414017;XM_005414018;XM_013509647;XR_001232465;XR_265084 XP_005414073;XP_005414074;XP_005414075;XP_013365101 MODEL 8771779 pseudo LOC102010323 40S ribosomal protein S20 pseudogene NW_004955596 302819 303144 - 102010323 AGCD01076514 MODEL 10348884 ncrna LOC106147042 uncharacterized LOC106147042 NW_004955513 3949650 3969240 - 106147042 AGCD01066913;XR_001231735 MODEL 39131499 protein-coding PLAC9 placenta associated 9 8899534 protein-coding Pou2f1 POU class 2 homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN lens induction in camera-type eye (ortholog); liver regeneration (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN forkhead class A signaling pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN endoplasmic reticulum (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955462 9545122 9710190 - 102024535 AGCD01049339;AGCD01049340;AGCD01049341;AGCD01049342;GBDJ01116013;XM_005398227;XM_005398228;XM_005398229;XM_005398232;XM_013521422 XP_005398284;XP_005398285;XP_005398286;XP_005398289;XP_013376876 MODEL 8920596 protein-coding Slc26a11 solute carrier family 26 member 11 ENCODES a protein that exhibits chloride channel activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); monoatomic anion transmembrane transporter activity (ortholog); INVOLVED IN sulfate transmembrane transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); Idiopathic Generalized Epilepsy (ortholog); mucopolysaccharidosis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); endoplasmic reticulum (ortholog) NW_004955506 2683637 2701889 - 102020467 AGCD01065301;GBCE01057227;XM_005407328;XM_013505989;XM_013505990 XP_005407385;XP_013361443;XP_013361444 MODEL 8945508 protein-coding Pigk phosphatidylinositol glycan anchor biosynthesis class K ENCODES a protein that exhibits GPI-anchor transamidase activity (ortholog); INVOLVED IN attachment of GPI anchor to protein (ortholog); GPI anchored protein biosynthesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorder with Hypotonia and Cerebellar Atrophy, with or without Seizures (ortholog); FOUND IN GPI-anchor transamidase complex (ortholog) NW_004955423 15864320 15970451 + 102029412 AGCD01023817;AGCD01023818;AGCD01023819;AGCD01023820;AGCD01023821;AGCD01023822;GBBH01186058;GBDJ01236342;XM_013514553 XP_013370007 MODEL 9050442 protein-coding Psmd12 proteasome 26S subunit, non-ATPase 12 ASSOCIATED WITH contact dermatitis (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog); proteasome regulatory particle (ortholog) NW_004955478 6536207 6558156 - 102010055 AGCD01055900;GBCB01003349;XM_005402153 XP_005402210 MODEL 8821186 protein-coding Limch1 LIM and calponin homology domains 1 ENCODES a protein that exhibits myosin II head/neck binding (ortholog); INVOLVED IN cytoplasmic actin-based contraction involved in cell motility (ortholog); negative regulation of cell migration (ortholog); positive regulation of protein phosphorylation (ortholog); ASSOCIATED WITH Hyperglycinemia, Lactic Acidosis, and Seizures (ortholog); malignant mesothelioma (ortholog); substance-related disorder (ortholog); FOUND IN actin cytoskeleton (ortholog); myosin II complex (ortholog); stress fiber (ortholog) NW_004955443 5984027 6305014 - 102011054 AGCD01038245;AGCD01038246;AGCD01038247;AGCD01038248;AGCD01038249;GBCB01002554;GBDK01003882;XM_005391928;XM_005391930;XM_013518053 XP_005391985;XP_005391987;XP_013373507 MODEL 8922939 protein-coding LOC102017558 inactive serine/threonine-protein kinase TEX14-like NW_004955468 2755885 2769051 + 102017558 AGCD01051835;AGCD01051836;GBDF01121864;XM_013522507;XM_013522508;XM_013522509;XM_013522510;XM_013522511;XM_013522512;XM_013522513;XM_013522515;XR_001236935 XP_013377961;XP_013377962;XP_013377963;XP_013377964;XP_013377965;XP_013377966;XP_013377967;XP_013377969 MODEL 8828322 protein-coding LOC102019111 keratin, type II cytoskeletal 6A NW_004955547 2871318 2880666 - 102019111 AGCD01072300;GBDJ01268420;XM_005411965 XP_005412022 MODEL 9055897 protein-coding Snx8 sorting nexin 8 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); intracellular protein transport (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN early endosome membrane (ortholog); intracellular membrane-bounded organelle (ortholog); retromer complex (ortholog) NW_004955460 9689654 9743891 - 102023782 AGCD01048548;AGCD01048549;GBCE01097252;XM_005397825;XM_013521218 XP_005397882;XP_013376672 MODEL 8979525 protein-coding LOC102023326 lymphocyte antigen 6E-like NW_004955454 1570760 1574221 - 102023326 AGCD01044973;GBCE01006947;XM_005395747;XM_013520225;XM_013520226 XP_005395804;XP_013375679;XP_013375680 MODEL 8862318 protein-coding Pum2 pumilio RNA binding family member 2 ENCODES a protein that exhibits lncRNA binding (ortholog); miRNA binding (ortholog); mRNA 3'-UTR binding (ortholog); INVOLVED IN adipose tissue development (ortholog); chromosome organization (ortholog); hair follicle development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN cytoplasmic stress granule (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955469 2810825 2886911 - 102013072 AGCD01052285;AGCD01052286;AGCD01052287;AGCD01052288;GBDK01194835;XM_005400344;XM_005400346;XM_005400350;XM_013522625;XM_013522626;XM_013522627;XM_013522628;XM_013522629;XM_013522630;XM_013522631 XP_005400401;XP_005400403;XP_005400407;XP_013378079;XP_013378080;XP_013378081;XP_013378082;XP_013378083;XP_013378084;XP_013378085 MODEL 8877767 ncrna LOC102005511 uncharacterized LOC102005511 NW_004955545 2705974 2709122 - 102005511 AGCD01071919;GBDI01034537;XR_001232179;XR_264880 MODEL 9036846 protein-coding Oxsr1 oxidative stress responsive kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); ion channel regulator activity (ortholog); INVOLVED IN cell volume homeostasis (ortholog); cellular hyperosmotic response (ortholog); cellular hypotonic response (ortholog); ASSOCIATED WITH Brugada syndrome (ortholog); hypertension (ortholog); Immunodeficiency 68 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955427 25575655 25696356 + 102007138 AGCD01027545;AGCD01027546;AGCD01027547;AGCD01027548;AGCD01027549;GBDF01044803;XM_005386597;XM_013515206;XM_013515207 XP_005386654;XP_013370660;XP_013370661 MODEL 8919269 ncrna LOC102024384 uncharacterized LOC102024384 NW_004955537 2895294 2898325 - 102024384 AGCD01070939;GBCQ01154811;XR_264779 MODEL 39133490 snrna U4 U4 spliceosomal RNA 8886432 pseudo LOC102010681 WD repeat domain phosphoinositide-interacting protein 2-like NW_004955411 4563483 4584420 + 102010681 AGCD01011581 MODEL 8945436 protein-coding Reep2 receptor accessory protein 2 ENCODES a protein that exhibits taste receptor binding (ortholog); INVOLVED IN endoplasmic reticulum tubular network organization (ortholog); protein transport into membrane raft (ortholog); regulation of intracellular transport (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic microtubule (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955418 2018891 2024545 - 102026866 AGCD01018739;GBCE01152326;XM_005382101;XM_005382102;XM_005382103 XP_005382158;XP_005382159;XP_005382160 MODEL 8835000 protein-coding Eno1 enolase 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); enzyme binding (ortholog); GTPase binding (ortholog); INVOLVED IN canonical glycolysis (ortholog); cellular response to hypoxia (ortholog); cellular response to interleukin-7 (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); adenocarcinoma (ortholog); Alzheimer's disease (ortholog); FOUND IN cell cortex (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955486 4275371 4287152 + 102025912 AGCD01059057;GBDF01006171;XM_005404048;XM_005404051 XP_005404105;XP_005404108 MODEL 8789620 protein-coding Tsen15 tRNA splicing endonuclease subunit 15 PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog) NW_004955406 22787090 22806231 + 102029824 AGCD01006161;GBDK01323609;XM_005375050 XP_005375107 MODEL 9033286 protein-coding LOC102017561 protein FAM205CP-like NW_004955472 1277942 1292106 + 102017561 AGCD01053383;AGCD01053384;AGCD01053385;GBDF01045749;XM_005401036 XP_005401093 MODEL 8907948 pseudo LOC102023336 40S ribosomal protein S20 pseudogene NW_004955408 21679215 21680621 - 102023336 AGCD01008558 MODEL 8816594 protein-coding Rasgrp4 RAS guanyl releasing protein 4 ENCODES a protein that exhibits diacylglycerol binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN antibacterial innate immune response (ortholog); phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); positive regulation of natural killer cell mediated immunity (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955468 1007082 1020744 + 102013157 AGCD01051748;GBDK01016923;XM_005399844;XM_013522410;XM_013522411;XM_013522412 XP_005399901;XP_013377864;XP_013377865;XP_013377866 MODEL 8735400 protein-coding Pasd1 PAS domain containing repressor 1 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); transcription regulator inhibitor activity (ortholog); INVOLVED IN negative regulation of circadian rhythm (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN Cry-Per complex (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955498 7127978 7194359 + 102028104 AGCD01063145;GBDF01196021;XM_013505536 XP_013360990 MODEL 8785612 protein-coding Wdr45 WD repeat domain 45 ENCODES a protein that exhibits phosphatidylinositol phosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); protein kinase binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); CEREBRAL-CEREBELLAR-COLOBOMA SYNDROME, X-LINKED (ortholog); congenital disorder of glycosylation type IIm (ortholog); FOUND IN phagophore assembly site (ortholog) NW_004955543 597796 604163 - 102006712 AGCD01071593;GBDI01078234;XM_005411316;XM_005411317;XM_005411319;XM_013508149 XP_005411373;XP_005411374;XP_005411376;XP_013363603 MODEL 9007595 protein-coding Pfdn6 prefoldin subunit 6 ENCODES a protein that exhibits amyloid-beta binding (ortholog); protein-folding chaperone binding (ortholog); unfolded protein binding (ortholog); INVOLVED IN chaperone-mediated protein complex assembly (ortholog); negative regulation of amyloid fibril formation (ortholog); protein folding (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); MHC class I deficiency (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN prefoldin complex (ortholog); RPAP3/R2TP/prefoldin-like complex (ortholog) NW_004955437 1848571 1849824 + 102030666 AGCD01034239;GBBH01034499;XM_005389483 XP_005389540 MODEL 8820968 protein-coding Proz protein Z, vitamin K dependent plasma glycoprotein INVOLVED IN blood coagulation (ortholog); PARTICIPATES IN coagulation cascade pathway; ASSOCIATED WITH Behcet's disease (ortholog); blood coagulation disease (ortholog); brain ischemia (ortholog); FOUND IN extracellular region (ortholog) NW_004955404 647217 657256 - 102006862 AGCD01003206;XM_005373954;XM_013515581;XM_013515592 XP_005374011;XP_013371035;XP_013371046 MODEL 8937040 protein-coding Smc3 structural maintenance of chromosomes 3 ENCODES a protein that exhibits beta-tubulin binding (ortholog); chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN meiotic cell cycle (ortholog); mitotic spindle assembly (ortholog); regulation of DNA replication (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Cornelia de Lange syndrome (ortholog); Cornelia de Lange syndrome 1 (ortholog); FOUND IN basement membrane (ortholog); chromatin (ortholog); cohesin complex (ortholog) NW_004955485 815281 848561 - 102015960 AGCD01058459;GBDK01140947;XM_005403754 XP_005403811 MODEL 9029502 protein-coding Plac9 placenta associated 9 ASSOCIATED WITH hypermethioninemia (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955437 13100613 13113555 + 102015764 AGCD01034646;GBDJ01176640;XM_005389884;XM_013517119;XM_013517120;XM_013517121 XP_005389941;XP_013372573;XP_013372574;XP_013372575 MODEL 9013956 protein-coding Pmpca peptidase, mitochondrial processing subunit alpha ENCODES a protein that exhibits endopeptidase activity (ortholog); metallopeptidase activity (ortholog); INVOLVED IN protein processing (ortholog); protein processing involved in protein targeting to mitochondrion (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955513 4315159 4322609 - 102006379 AGCD01066925;GBDF01081940;XM_005408489;XM_013506655 XP_005408546;XP_013362109 MODEL 39131411 protein-coding PIGL phosphatidylinositol glycan anchor biosynthesis class L 8913820 ncrna LOC102003727 uncharacterized LOC102003727 NW_004955453 14568514 14584297 - 102003727 AGCD01044871;GBDF01078382;XR_262740 MODEL 8952183 pseudo LOC102011905 dnaJ homolog subfamily A member 1 pseudogene NW_004955526 2793294 2822895 + 102011905 AGCD01069321 MODEL 8887793 protein-coding Timp3 TIMP metallopeptidase inhibitor 3 INVOLVED IN cellular response to hypoxia (ortholog); cellular response to interleukin-6 (ortholog); cellular response to peptide (ortholog); PARTICIPATES IN angiotensin II signaling pathway via AT2 receptor; ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); asthma (ortholog); bladder disease (ortholog); FOUND IN basement membrane (ortholog) NW_004955405 41613976 41655813 + 102003311 AGCD01005557;GBCE01004412;XM_005374652 XP_005374709 MODEL 8876848 protein-coding Oxtr oxytocin receptor ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); oxytocin receptor activity (ortholog); peptide hormone binding (ortholog); INVOLVED IN digestive tract development (ortholog); eating behavior (ortholog); ERK1 and ERK2 cascade (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphai family; G protein mediated signaling pathway via Galphaq family; oxytocin signaling pathway; ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); anxiety disorder (ortholog); FOUND IN adherens junction (ortholog); apical plasma membrane (ortholog); microvillus (ortholog) NW_004955561 340387 354499 - 102026917 AGCD01073821;GBDJ01298368;XM_013509070;XM_013509071;XM_013509072;XM_013509073 XP_013364524;XP_013364525;XP_013364526;XP_013364527 MODEL 8985698 protein-coding Pum3 pumilio RNA binding family member 3 ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); FOUND IN chromosome (ortholog); endoplasmic reticulum (ortholog); nucleolus (ortholog) NW_004955434 7208319 7245324 - 102019197 AGCD01032231;GBDK01357572;XM_005388614;XM_005388615;XM_013516375 XP_005388671;XP_005388672;XP_013371829 MODEL 8991702 protein-coding Slc4a7 solute carrier family 4 member 7 ENCODES a protein that exhibits sodium:bicarbonate symporter activity (ortholog); INVOLVED IN auditory receptor cell development (ortholog); camera-type eye photoreceptor cell differentiation (ortholog); cellular response to growth factor stimulus (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); fundus dystrophy (ortholog); lung adenocarcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cytoplasm (ortholog) NW_004955430 18991615 19059590 - 102017367 AGCD01029704;GBBH01198258;GBCQ01154648;XM_013515625 XP_013371079 MODEL 8875025 protein-coding Btd biotinidase ENCODES a protein that exhibits biotinidase activity (ortholog); INVOLVED IN biotin metabolic process (ortholog); PARTICIPATES IN biotin metabolic pathway; biotinidase deficiency pathway; holocarboxylase synthetase deficiency pathway; ASSOCIATED WITH 3p deletion syndrome (ortholog); autistic disorder (ortholog); biotin deficiency (ortholog); FOUND IN apical part of cell (ortholog); extracellular region (ortholog); nucleolus (ortholog) NW_004955430 7960036 7988754 + 102022111 AGCD01029378;GBDF01001926;XM_005387438;XM_005387439;XM_005387440;XM_005387441;XM_005387442;XM_005387443;XM_013515701;XM_013515702 XP_005387495;XP_005387496;XP_005387497;XP_005387498;XP_005387499;XP_005387500;XP_013371155;XP_013371156 MODEL 8943620 protein-coding Eno2 enolase 2 ENCODES a protein that exhibits enzyme binding (ortholog); identical protein binding (ortholog); phosphopyruvate hydratase activity (ortholog); INVOLVED IN canonical glycolysis (ortholog); gluconeogenesis (ortholog); multicellular organismal reproductive process (ortholog); PARTICIPATES IN gluconeogenesis pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Atrophy (ortholog); brain disease (ortholog); FOUND IN cell cortex (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955413 4498625 4506769 + 102006232 AGCD01013620;GBBH01088486;GBDF01119626;XM_005378839 XP_005378896 MODEL 39133268 snorna SNORD48 small nucleolar RNA, C/D box 48 9033791 protein-coding LOC102009564 regulator of nonsense transcripts 3A-like NW_004956152 404 2615 - 102009564 AGCD01079146;GBDJ01132460;XM_005415172 XP_005415229 MODEL 10331620 protein-coding LOC106149874 translation initiation factor IF-2-like NW_004955456 15270220 15276396 - 106149874 AGCD01046666;AGCD01046667;GBCE01007494;XM_013520519 XP_013375973 MODEL 39131571 protein-coding PURA purine rich element binding protein A 8769647 protein-coding Pask PAS domain containing serine/threonine kinase ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN energy homeostasis (ortholog); negative regulation of glycogen biosynthetic process (ortholog); protein autophosphorylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955542 539806 578496 + 102011361 AGCD01071474;GBDF01084415;XM_013508060;XM_013508061 XP_013363514;XP_013363515 MODEL 9019517 protein-coding Rasip1 Ras interacting protein 1 ENCODES a protein that exhibits GTPase binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN angiogenesis (ortholog); branching morphogenesis of an epithelial tube (ortholog); negative regulation of autophagy (ortholog); FOUND IN cell-cell junction (ortholog); protein-containing complex (ortholog) NW_004955559 1830574 1844107 + 102020728 AGCD01073672;AGCD01073673;AGCD01073674;AGCD01073675;GBBH01005709;GBDF01267130;XM_013508989 XP_013364443 MODEL 9066264 pseudo LOC102015648 cytochrome b-c1 complex subunit 7 pseudogene NW_004955500 6288689 6290469 - 102015648 AGCD01063875;XM_005406608 MODEL 8843012 ncrna LOC102008453 uncharacterized LOC102008453 NW_004955436 8430136 8452234 + 102008453 AGCD01033741;AGCD01033742;GBDJ01154251;XR_261770 MODEL 8909584 pseudo LOC102011069 multifunctional protein ADE2 pseudogene NW_004955402 52895248 52897277 + 102011069 AGCD01001350 MODEL 8883181 protein-coding Ric3 RIC3 acetylcholine receptor chaperone ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); protein folding chaperone (ortholog); INVOLVED IN positive regulation of cytosolic calcium ion concentration (ortholog); positive regulation of protein localization to cell surface (ortholog); protein-containing complex assembly (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); Retinal Dystrophy and Obesity (ortholog); FOUND IN endoplasmic reticulum (ortholog); membrane (ortholog) NW_004955414 23925149 23967772 - 102016259 AGCD01015530;AGCD01015531;AGCD01015532;GBDJ01032040;XM_005380215;XM_013512016 XP_005380272;XP_013367470 MODEL 8915732 protein-coding Pura purine rich element binding protein A ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN cell population proliferation (ortholog); dendritic transport of messenger ribonucleoprotein complex (ortholog); epithelial cell proliferation (ortholog); ASSOCIATED WITH Apnea (ortholog); autosomal dominant intellectual developmental disorder 31 (ortholog); Cerebral Autosomal Recessive Arteriopathy with Subcortical Infarcts and Leukoencephalopathy (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955418 538883 548605 - 102023035 AGCD01018679;AGCD01018680;GBDJ01136954;GBDK01130809;XM_013512869 XP_013368323 MODEL 8705691 ncrna LOC102003728 uncharacterized LOC102003728 NW_004955454 12328311 12330494 + 102003728 AGCD01045409;XR_262791 MODEL 39131737 snorna SNORA70 Small nucleolar RNA SNORA70 9014771 protein-coding Pmpcb peptidase, mitochondrial processing subunit beta ENCODES a protein that exhibits endopeptidase activity (ortholog); metalloendopeptidase activity (ortholog); metallopeptidase activity (ortholog); INVOLVED IN protein processing (ortholog); protein processing involved in protein targeting to mitochondrion (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH genetic disease (ortholog); multiple mitochondrial dysfunctions syndrome 6 (ortholog); Norman-Roberts syndrome (ortholog); FOUND IN mitochondrial processing peptidase complex (ortholog); mitochondrion (ortholog) NW_004955410 8304088 8317639 + 102016455 AGCD01010744;GBDK01229185;XM_005377228;XM_005377229 XP_005377285;XP_005377286 MODEL 8850213 ncrna LOC102023337 uncharacterized LOC102023337 NW_004955409 24271717 24309073 - 102023337 AGCD01010080;GBCE01171997;XR_001232657 MODEL 9038514 protein-coding Tsen2 tRNA splicing endonuclease subunit 2 INVOLVED IN tRNA splicing, via endonucleolytic cleavage and ligation (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH Deglutition Disorders (ortholog); genetic disease (ortholog); hemolytic-uremic syndrome (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955429 14970105 14997459 + 102018956 AGCD01028787;AGCD01028788;GBDK01001142;XM_005387020;XM_005387021;XM_013515519;XR_001234537;XR_261333 XP_005387077;XP_005387078;XP_013370973 MODEL 8723354 ncrna LOC102010324 uncharacterized LOC102010324 NW_004955403 1876109 1880828 - 102010324 AGCD01001726;GBCQ01179100;XR_259132 MODEL 8826727 protein-coding Serping1 serpin family G member 1 ENCODES a protein that exhibits complement binding (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN negative regulation of complement activation, lectin pathway (ortholog); PARTICIPATES IN coagulation cascade pathway; kallikrein-kinin cascade pathway; ASSOCIATED WITH acquired angioedema (ortholog); Acute Experimental Pancreatitis (ortholog); Acute Lung Injury (ortholog); FOUND IN extracellular space (ortholog) NW_004955511 2545337 2557850 + 102019092 AGCD01066414;GBCQ01008778;GBDF01198841;XM_013506484 XP_013361938 MODEL 8894385 protein-coding Rab5a RAB5A, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GDP-dissociation inhibitor binding (ortholog); GTP binding (ortholog); INVOLVED IN amyloid-beta clearance by transcytosis (ortholog); canonical Wnt signaling pathway (ortholog); early endosome to late endosome transport (ortholog); PARTICIPATES IN autophagy pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH 3p deletion syndrome (ortholog); Myocardial Ischemia (ortholog); FOUND IN actin cytoskeleton (ortholog); axon (ortholog); axon terminus (ortholog) NW_004955430 11991548 12040003 + 102004840 AGCD01029472;AGCD01029473;GBDF01119494;XM_005387462;XM_013515692 XP_005387519;XP_013371146 MODEL 8969247 protein-coding Wdr45b WD repeat domain 45B ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); TSC1-TSC2 complex binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH generalized epilepsy (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN lysosome (ortholog); phagophore assembly site (ortholog) NW_004955506 515364 556507 + 102006797 AGCD01065230;AGCD01065231;AGCD01065232;GBDF01081047;XM_005407188 XP_005407245 MODEL 8801909 protein-coding Pou2f2 POU class 2 homeobox 2 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cell maturation (ortholog); cellular response to virus (ortholog); mature B cell differentiation (ortholog); ASSOCIATED WITH Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955555 759308 793500 + 102030245 AGCD01073048;AGCD01073049;GBDI01187600;XM_005412389;XM_005412390;XM_005412391;XM_005412392;XM_005412393;XM_013508765;XM_013508766;XM_013508768;XM_013508769;XM_013508770;XM_013508771;XM_013508772;XM_013508774;XM_013508775;XM_013508776 XP_005412446;XP_005412447;XP_005412448;XP_005412449;XP_005412450;XP_013364219;XP_013364220;XP_013364222;XP_013364223;XP_013364224;XP_013364225;XP_013364226;XP_013364228;XP_013364229;XP_013364230 MODEL 8838901 pseudo LOC102008040 very-long-chain 3-oxoacyl-CoA reductase pseudogene NW_004955572 223774 282157 + 102008040 AGCD01074901;AGCD01074902;AGCD01074903;AGCD01074904;AGCD01074905;AGCD01074906 MODEL 8950958 protein-coding LOC102019112 olfactory receptor 11H12-like NW_004955550 163342 164301 - 102019112 AGCD01072485;XM_013508545 XP_013363999 MODEL 8773900 pseudo LOC102006568 prefoldin subunit 1 pseudogene NW_004955472 1989943 1990819 - 102006568 AGCD01053427 MODEL 8756076 protein-coding LOC102005515 zinc finger protein 350 NW_004955558 546358 562360 + 102005515 AGCD01073376;GBBH01131689;XM_005412662;XM_005412664;XM_005412665;XM_005412666;XM_005412667;XM_005412668;XM_013508866;XM_013508867 XP_005412719;XP_005412721;XP_005412722;XP_005412723;XP_005412724;XP_005412725;XP_013364320;XP_013364321 MODEL 8828118 protein-coding LOC102010684 C-type lectin domain family 2 member F-like NW_004955413 7860820 7873954 + 102010684 AGCD01013834;GBDF01050906;XM_005378944 XP_005379001 MODEL 8854048 protein-coding Rab5b RAB5B, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP-dependent protein binding (ortholog); GTPase activity (ortholog); INVOLVED IN antigen processing and presentation (ortholog); endosome organization (ortholog); plasma membrane to endosome transport (ortholog); ASSOCIATED WITH Pulmonary Surfactant Metabolism Dysfunction 1 (ortholog); FOUND IN endocytic vesicle (ortholog); endosome (ortholog); extracellular exosome (ortholog) NW_004955458 3563363 3582620 + 102026402 AGCD01047320;AGCD01047321;AGCD01047322;AGCD01047323;AGCD01047324;GBCB01000783;GBDF01126202;XM_013520906 XP_013376360 MODEL 8769031 pseudo LOC102015650 ADP-ribose pyrophosphatase, mitochondrial pseudogene NW_004955425 2036996 2038353 + 102015650 AGCD01025251 MODEL 8959917 protein-coding Pou2f3 POU class 2 homeobox 3 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN cell differentiation (ortholog); epidermis development (ortholog); keratinocyte differentiation (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); nucleolus (ortholog) NW_004955412 21261389 21339602 + 102010884 AGCD01013020;AGCD01013021;GBCE01142334;XM_005378347;XM_013511247 XP_005378404;XP_013366701 MODEL 8946633 ncrna LOC102021628 uncharacterized LOC102021628 NW_004955407 40113326 40117575 + 102021628 AGCD01007838;GBDF01144645;XR_259633 MODEL 10290015 ncrna LOC106147043 uncharacterized LOC106147043 NW_004955513 1100891 1101980 - 106147043 AGCD01066841;GBDK01313714;XR_001231736 MODEL 8952634 pseudo LOC102006941 eukaryotic translation initiation factor 5A-2 pseudogene NW_004955433 470536 470996 - 102006941 AGCD01031323 MODEL 8890232 protein-coding Timp4 TIMP metallopeptidase inhibitor 4 INVOLVED IN Notch signaling pathway (ortholog); ovulation cycle (ortholog); response to cytokine (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Arteriovenous Fistula (ortholog); Breast Neoplasms (ortholog); FOUND IN extracellular space (ortholog); sarcomere (ortholog) NW_004955429 14689016 14693211 - 102017362 AGCD01028784;GBDI01354181;XM_005387015 XP_005387072 MODEL 9027856 protein-coding Slc26a2 solute carrier family 26 member 2 ENCODES a protein that exhibits solute:inorganic anion antiporter activity (ortholog); sulfate transmembrane transporter activity (ortholog); INVOLVED IN chondrocyte differentiation (ortholog); chondrocyte proliferation (ortholog); sulfate transmembrane transport (ortholog); ASSOCIATED WITH 3MC syndrome 2 (ortholog); achondrogenesis (ortholog); achondrogenesis type IB (ortholog); FOUND IN apical plasma membrane (ortholog); microvillus membrane (ortholog); plasma membrane (ortholog) NW_004955415 4540302 4556360 - 102019592 AGCD01015974;GBDJ01124708;XM_005380589;XM_005380590;XM_013512336 XP_005380646;XP_005380647;XP_013367790 MODEL 8912328 protein-coding Slc4a8 solute carrier family 4 member 8 ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); chloride transmembrane transporter activity (ortholog); identical protein binding (ortholog); INVOLVED IN basolateral protein secretion (ortholog); bicarbonate transport (ortholog); chloride transmembrane transport (ortholog); ASSOCIATED WITH prediabetes syndrome (ortholog); FOUND IN asymmetric synapse (ortholog); axon terminus (ortholog); basolateral plasma membrane (ortholog) NW_004955547 1896597 1975285 + 102025945 AGCD01072250;AGCD01072251;GBDF01263263;XM_005415404 XP_005415461 MODEL 8728342 ncrna LOC102012697 uncharacterized LOC102012697 NW_004955445 18404493 18440417 + 102012697 AGCD01039904;GBDF01229799;XR_262357 MODEL 8889435 protein-coding Psmd13 proteasome 26S subunit, non-ATPase 13 INVOLVED IN meiosis I (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); human immunodeficiency virus infectious disease (ortholog); immunodeficiency 39 (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog); proteasome regulatory particle (ortholog) NW_004955476 11782461 11794839 - 102029619 AGCD01055474;GBDJ01072396;XM_005401886 XP_005401943 MODEL 9010601 pseudo LOC102023339 heat shock protein HSP 90-alpha pseudogene NW_004955462 1770313 1790894 - 102023339 AGCD01049132;AGCD01049133;XR_263136 MODEL 8786173 protein-coding Btf3 basic transcription factor 3 INVOLVED IN in utero embryonic development (ortholog); negative regulation of protein localization to endoplasmic reticulum (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nascent polypeptide-associated complex (ortholog) NW_004955425 27099207 27105644 - 102007789 AGCD01025960;GBDF01008196;XM_005386072;XM_005386073 XP_005386129;XP_005386130 MODEL 8886178 protein-coding ND4 NADH dehydrogenase subunit 4 MT 10171 11548 + 15822211 JX312692 AFQ55786;YP_008080754 REVIEWED 10306039 ncrna LOC106149875 uncharacterized LOC106149875 NW_004955456 61206 64348 + 106149875 AGCD01046195;GBBH01110868;XR_001236326 MODEL 8720600 pseudo LOC102018700 receptor-type tyrosine-protein phosphatase alpha pseudogene NW_004955411 21173967 21176388 - 102018700 AGCD01012069 MODEL 9026532 protein-coding Pigl phosphatidylinositol glycan anchor biosynthesis class L ENCODES a protein that exhibits N-acetylglucosaminylphosphatidylinositol deacetylase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH CHIME syndrome (ortholog); genetic disease (ortholog); hyperphosphatasia with impaired intellectual development syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955467 1566494 1645158 + 102015493 AGCD01051267;AGCD01051268;AGCD01051269;AGCD01051270;AGCD01051271;GBDF01305356;XM_013522032 XP_013377486 MODEL 39133491 snrna U4 U4 spliceosomal RNA 8905107 pseudo LOC102011909 ATP synthase F(0) complex subunit C2, mitochondrial pseudogene NW_004955538 2556303 2557233 + 102011909 AGCD01071128 MODEL 8896792 protein-coding Reep3 receptor accessory protein 3 INVOLVED IN mitotic nuclear membrane reassembly (ortholog); nuclear envelope organization (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); autosomal dominant intellectual developmental disorder 70 (ortholog) NW_004955425 16633900 16689549 + 102026234 AGCD01025615;AGCD01025616;AGCD01025617;GBDJ01126439;XM_013514852;XM_013514853;XM_013514854 XP_013370306;XP_013370307;XP_013370308 MODEL 8960410 ncrna LOC102008041 uncharacterized LOC102008041 NW_004955402 703396 705592 + 102008041 AGCD01000030;GBCE01120029;XR_001233535 MODEL 8934727 protein-coding Tpx2 TPX2 microtubule nucleation factor ENCODES a protein that exhibits importin-alpha family protein binding (ortholog); molecular adaptor activity (ortholog); protein kinase binding (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); microtubule nucleation (ortholog); mitotic spindle assembly (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN axon hillock (ortholog); intercellular bridge (ortholog); microtubule cytoskeleton (ortholog) NW_004955422 29170695 29233924 - 102014064 AGCD01023379;AGCD01023380;AGCD01023381;AGCD01023382;AGCD01023383;GBBH01149736;XM_005384887;XM_005384888;XM_005384889;XM_005384890;XM_005384891;XM_005384892;XM_013514186;XM_013514187;XM_013514188;XM_013514190 XP_005384944;XP_005384945;XP_005384946;XP_005384947;XP_005384948;XP_005384949;XP_013369640;XP_013369641;XP_013369642;XP_013369644 MODEL 8970969 protein-coding P2rx1 purinergic receptor P2X 1 ENCODES a protein that exhibits ATP binding (ortholog); extracellularly ATP-gated monoatomic cation channel activity (ortholog); identical protein binding (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); establishment of localization in cell (ortholog); insemination (ortholog); ASSOCIATED WITH Canavan disease (ortholog); toxic encephalopathy (ortholog); FOUND IN external side of plasma membrane (ortholog); glutamatergic synapse (ortholog); membrane raft (ortholog) NW_004955467 12955663 12971547 + 102017000 AGCD01051661;GBDK01383562;XM_005399703 XP_005399760 MODEL 9062780 protein-coding Ric8a RIC8 guanine nucleotide exchange factor A ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); basement membrane organization (ortholog); cell migration involved in gastrulation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955476 11827004 11833495 - 102029962 AGCD01055475;GBBH01139853;XM_005401889;XM_005401890;XM_013502915 XP_005401946;XP_005401947;XP_013358369 MODEL 39131736 snorna SNORA70 Small nucleolar RNA SNORA70 10265739 protein-coding Rab5c RAB5C, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTPase activity (ortholog); INVOLVED IN endosome organization (ortholog); plasma membrane to endosome transport (ortholog); regulation of endocytosis (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 41 (ortholog); genetic disease (ortholog); FOUND IN endocytic vesicle (ortholog); endosome (ortholog); exocytic vesicle (ortholog) NW_004955451 16200442 16215583 - 106146228 AGCD01043660;GBCQ01075012;XM_005394449 XP_005394506 MODEL 8846731 protein-coding Srprb SRP receptor subunit beta ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); ASSOCIATED WITH Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic microtubule (ortholog); membrane (ortholog) NW_004955501 4784266 4796587 - 102026890 AGCD01064145;GBDF01046594;XM_005406808 XP_005406865 MODEL 8760058 protein-coding Eno3 enolase 3 ENCODES a protein that exhibits identical protein binding (ortholog); phosphopyruvate hydratase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN canonical glycolysis (ortholog); response to xenobiotic stimulus (ortholog); skeletal muscle tissue regeneration (ortholog); ASSOCIATED WITH aortic valve stenosis (ortholog); congenital myasthenic syndrome 4A (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955467 10363154 10368261 + 102021867 AGCD01051561;GBDF01119625;XM_005399622 XP_005399679 MODEL 8818554 protein-coding Limd1 LIM domain containing 1 ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN cell migration (ortholog); cytoskeleton organization (ortholog); miRNA-mediated gene silencing by inhibition of translation (ortholog); ASSOCIATED WITH Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); FOUND IN adherens junction (ortholog); cytoplasm (ortholog); focal adhesion (ortholog) NW_004955420 26290792 26328637 - 102007438 AGCD01021398;AGCD01021399;AGCD01021400;GBBH01126814;GBCE01142249;XM_005383471 XP_005383528 MODEL 8866336 ncrna LOC102008048 uncharacterized LOC102008048 NW_004955403 45870106 45876316 - 102008048 AGCD01002838;GBDJ01116277;XR_259242 MODEL 8829237 protein-coding Pfkfb1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 ENCODES a protein that exhibits 6-phosphofructo-2-kinase activity (ortholog); ATP binding (ortholog); fructose-2,6-bisphosphate 2-phosphatase activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); carbohydrate phosphorylation (ortholog); fructose 2,6-bisphosphate metabolic process (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; gluconeogenesis pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Cornelia de Lange syndrome 2 (ortholog); FOUND IN 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase complex (ortholog) NW_004955475 2279390 2343881 - 102025351 AGCD01054800;AGCD01054801;GBCB01000266;XM_005401535;XM_005401536;XM_013502854;XM_013502855;XM_013502856 XP_005401592;XP_005401593;XP_013358308;XP_013358309;XP_013358310 MODEL 8716137 protein-coding LOC102009565 phosphoinositide-3-kinase-interacting protein 1-like NW_004957624 10 1097 - 102009565 AGCD01081020;GBDJ01181150;GBDK01091793;XM_005415233 XP_005415290 MODEL 8899733 protein-coding Smc4 structural maintenance of chromosomes 4 ENCODES a protein that exhibits chromatin binding (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN kinetochore organization (ortholog); meiotic chromosome condensation (ortholog); meiotic chromosome segregation (ortholog); FOUND IN chromosome, centromeric region (ortholog); condensed nuclear chromosome (ortholog); condensin complex (ortholog) NW_004955448 10926653 10960624 + 102003919 AGCD01041504;AGCD01041505;AGCD01041506;AGCD01041507;GBBH01229940;GBDF01088763;XM_005393119 XP_005393176 MODEL 8956577 protein-coding Plag1 PLAG1 zinc finger ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN gland morphogenesis (ortholog); multicellular organism growth (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955454 15239042 15281669 - 102011950 AGCD01045490;GBDF01221602;XM_005396081;XM_013520253 XP_005396138;XP_013375707 MODEL 8843339 protein-coding LOC102019114 tubulin alpha-3 chain-like NW_004955442 19296034 19308163 + 102019114 AGCD01038049;AGCD01038050;AGCD01038051;GBDF01010845;GBDK01361085;XM_013517984 XP_013373438 MODEL 8971050 protein-coding Rtkn2 rhotekin 2 INVOLVED IN hemopoiesis (ortholog); negative regulation of intrinsic apoptotic signaling pathway (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 70 (ortholog); interstitial lung disease 2 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955425 15484287 15563535 - 102020354 AGCD01025582;AGCD01025583;AGCD01025584;AGCD01025585;AGCD01025586;GBDF01039332;XM_005385949;XM_005385950;XM_013514864 XP_005386006;XP_005386007;XP_013370318 MODEL 8996746 protein-coding Psmd14 proteasome 26S subunit, non-ATPase 14 ENCODES a protein that exhibits endopeptidase activator activity (ortholog); metal-dependent deubiquitinase activity (ortholog); proteasome binding (ortholog); INVOLVED IN double-strand break repair via homologous recombination (ortholog); double-strand break repair via nonhomologous end joining (ortholog); protein K63-linked deubiquitination (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH Alcoholic Liver Diseases (ortholog); autistic disorder (ortholog); Disease Progression (ortholog); FOUND IN cytosolic proteasome complex (ortholog); proteasome accessory complex (ortholog); proteasome complex (ortholog) NW_004955449 12306026 12400908 - 102023649 AGCD01042111;AGCD01042112;GBDF01082613;XM_005393338;XM_005393340 XP_005393395;XP_005393397 MODEL 8871572 protein-coding Pde6a phosphodiesterase 6A INVOLVED IN photoreceptor cell maintenance (ortholog); retina development in camera-type eye (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; visual phototransduction pathway; ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog) NW_004955415 4556636 4637070 + 102020108 AGCD01015974;AGCD01015975;AGCD01015976;GBDI01362005;XM_005380591;XM_005380592 XP_005380648;XP_005380649 MODEL 39133492 snrna U4 U4 spliceosomal RNA 8963331 protein-coding LOC102011070 vomeronasal type-1 receptor 4-like NW_004955603 546797 561763 + 102011070 AGCD01076853;AGCD01076854;AGCD01076855;XM_005414848 XP_005414905 MODEL 10212641 ncrna LOC106149876 uncharacterized LOC106149876 NW_004955456 13860402 13862459 + 106149876 AGCD01046625;GBCE01172615;XR_001236333 MODEL 9050663 protein-coding Trmt13 tRNA methyltransferase 13 homolog ASSOCIATED WITH maple syrup urine disease (ortholog) NW_004955435 4885910 4902759 + 102022535 AGCD01032861;GBDF01002213;GBDJ01075836;XM_013516438 XP_013371892 MODEL 8740447 protein-coding Pigm phosphatidylinositol glycan anchor biosynthesis class M ENCODES a protein that exhibits glycolipid 1,4-alpha-mannosyltransferase activity (ortholog); mannosyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-mannosyltransferase I complex (ortholog) NW_004955468 11817647 11820456 - 102012944 AGCD01052139;GBDK01168852;XM_005400190 XP_005400247 MODEL 9060342 protein-coding Pou3f2 POU class 3 homeobox 2 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN central nervous system neuron differentiation (ortholog); cerebral cortex radially oriented cell migration (ortholog); epidermis development (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955411 24714899 24722048 + 102021860 AGCD01012136;AGCD01012137;XM_005377797 XP_005377854 MODEL 10170201 ncrna LOC106147044 uncharacterized LOC106147044 NW_004955408 13798124 13900634 - 106147044 AGCD01008374;AGCD01008375;AGCD01008376;GBDF01293966;XR_001231737;XR_001231738 MODEL 10172445 ncrna LOC106149877 uncharacterized LOC106149877 NW_004955456 11771322 11776854 + 106149877 AGCD01046557;AGCD01046558;GBDF01094497;XR_001236336 MODEL 9061456 protein-coding LOC102010328 putative tripartite motif-containing protein 64C NW_004955790 9857 10650 + 102010328 AGCD01078353;XM_013510192 XP_013365646 MODEL 8968022 protein-coding Pate1 prostate and testis expressed 1 ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog) NW_004955412 26801951 26804312 + 102004152 AGCD01013215;XM_005378656 XP_005378713 MODEL 9031796 pseudo LOC102011501 60S ribosomal protein L9 pseudogene NW_004955406 3129354 3129909 + 102011501 AGCD01005665 MODEL 8767456 protein-coding Ric8b RIC8 guanine nucleotide exchange factor B ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); protein folding chaperone (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); regulation of G protein-coupled receptor signaling pathway (ortholog); sensory perception of smell (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955405 40659946 40782870 + 102023663 AGCD01005522;AGCD01005523;AGCD01005524;AGCD01005525;AGCD01005526;AGCD01005527;AGCD01005528;GBDK01360337;XM_013519064;XM_013519068;XM_013519080;XM_013519087;XM_013519095;XR_001235931;XR_001235932;XR_001235933;XR_001235934;XR_001235936 XP_013374518;XP_013374522;XP_013374534;XP_013374541;XP_013374549 MODEL 8969714 protein-coding LOC102023343 putative olfactory receptor 10D4 NW_004955412 24784274 24785062 + 102023343 AGCD01013125;XM_005378637 XP_005378694 MODEL 8745432 protein-coding Slc4a9 solute carrier family 4 member 9 ENCODES a protein that exhibits chloride:bicarbonate antiporter activity (ortholog); sodium,bicarbonate:chloride antiporter activity (ortholog); sodium:bicarbonate symporter activity (ortholog); INVOLVED IN monoatomic anion transport (ortholog); saliva secretion (ortholog); sodium ion transmembrane transport (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN apical part of cell (ortholog); basolateral plasma membrane (ortholog); membrane (ortholog) NW_004955418 273383 288675 - 102005141 AGCD01018671;GBBH01001332;XM_013512899;XM_013512900;XM_013512901;XM_013512902;XM_013512903;XR_001233497 XP_013368353;XP_013368354;XP_013368355;XP_013368356;XP_013368357 MODEL 9052322 protein-coding Eno4 enolase 4 ENCODES a protein that exhibits phosphopyruvate hydratase activity (ortholog); INVOLVED IN cilium organization (ortholog); flagellated sperm motility (ortholog); glycolytic process (ortholog); ASSOCIATED WITH male infertility (ortholog); syndromic microphthalmia 11 (ortholog); FOUND IN sperm principal piece (ortholog) NW_004955431 21625808 21650282 + 102024713 AGCD01030496;GBCE01181692;XM_005387856;XM_005387858;XM_005387859 XP_005387913;XP_005387915;XP_005387916 MODEL 8984576 protein-coding LOC102009569 protocadherin-8 NW_004955404 50763263 50767330 + 102009569 AGCD01004536;AGCD01004537;GBDF01044218;XM_005374213;XM_013516742 XP_005374270;XP_013372196 MODEL 9013475 protein-coding LOC102017562 olfactory receptor 502 NW_004955414 23671645 23672589 - 102017562 AGCD01015514;XM_013511762 XP_013367216 MODEL 8930659 pseudo LOC102015655 olfactory receptor 10AG1-like NW_004955511 5021380 5022347 - 102015655 AGCD01066542 MODEL 8862525 pseudo LOC102019115 sodium-coupled neutral amino acid transporter 5 pseudogene NW_004955559 1182193 1184912 + 102019115 AGCD01073634 MODEL 8774683 ncrna LOC102021630 uncharacterized LOC102021630 NW_004955456 15990135 16004134 + 102021630 AGCD01046681;GBDF01030945;XR_001236355 MODEL 9000017 protein-coding Reep4 receptor accessory protein 4 INVOLVED IN mitotic nuclear membrane reassembly (ortholog); nuclear envelope organization (ortholog); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955403 45627750 45631481 - 102003719 AGCD01002824;GBBH01051322;XM_005373648;XM_013513770 XP_005373705;XP_013369224 MODEL 9037443 protein-coding Pms1 PMS1 homolog 1, mismatch repair system component ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN mismatch repair (ortholog); response to xenobiotic stimulus (ortholog); PARTICIPATES IN altered mismatch repair pathway; colorectal cancer pathway; mismatch repair pathway; ASSOCIATED WITH breast cancer (ortholog); Colonic Polyps (ortholog); colorectal cancer (ortholog); FOUND IN nucleus (ortholog) NW_004955403 9021488 9100442 - 102005433 AGCD01001900;AGCD01001901;GBDK01434121;XM_005373313;XM_013512339 XP_005373370;XP_013367793 MODEL 8827586 pseudo LOC102024389 laccase domain-containing protein 1 pseudogene NW_004955444 15864562 15865847 - 102024389 AGCD01039157 MODEL 8708720 pseudo LOC102021634 granzyme B(G,H)-like NW_004955409 35533853 35535909 + 102021634 AGCD01010425 MODEL 8893105 protein-coding Tra2a transformer 2 alpha homolog ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); positive regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); pleomorphic xanthoastrocytoma (ortholog); skin disease (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955410 25759649 25784128 - 102015297 AGCD01011173;AGCD01011174;GBDJ01001545;XM_005377400 XP_005377457 MODEL 9013641 protein-coding Serpinh1 serpin family H member 1 ENCODES a protein that exhibits unfolded protein binding (ortholog); INVOLVED IN chondrocyte development involved in endochondral bone morphogenesis (ortholog); collagen biosynthetic process (ortholog); collagen fibril organization (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); adult respiratory distress syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955414 16284845 16292828 - 102024992 AGCD01015208;GBCE01003981;XM_005379884;XM_005379885;XM_013512064 XP_005379941;XP_005379942;XP_013367518 MODEL 9063308 protein-coding Pign phosphatidylinositol glycan anchor biosynthesis class N ENCODES a protein that exhibits mannose-ethanolamine phosphotransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); choreatic disease (ortholog); chromosome 18q deletion syndrome (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955402 45979577 46114634 - 102019552 AGCD01001145;AGCD01001146;AGCD01001147;AGCD01001148;AGCD01001149;AGCD01001150;AGCD01001151;GBDI01310095;XM_005373015;XM_013511150;XM_013511154;XM_013511163;XM_013511173;XM_013511179;XR_001232906 XP_005373072;XP_013366604;XP_013366608;XP_013366617;XP_013366627;XP_013366633 MODEL 8992637 pseudo LOC102018702 U2 small nuclear ribonucleoprotein B'' pseudogene NW_004955465 10212506 10213202 - 102018702 AGCD01050503 MODEL 8804010 protein-coding ND4L NADH dehydrogenase subunit 4L MT 9881 10177 + 15822230 JX312692 AFQ55785;YP_008080753 REVIEWED 8799544 protein-coding Srpx sushi repeat containing protein X-linked INVOLVED IN autophagy (ortholog); negative regulation of cell proliferation involved in contact inhibition (ortholog); phagolysosome assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Dwarfism (ortholog); hepatocellular carcinoma (ortholog); FOUND IN autophagosome (ortholog); endoplasmic reticulum (ortholog) NW_004955601 286092 364235 - 102027254 AGCD01076751;AGCD01076752;AGCD01076753;AGCD01076754;GBCE01028505;XM_005414816;XM_005414817 XP_005414873;XP_005414874 MODEL 8709800 pseudo LOC102008454 uncharacterized LOC102008454 NW_004955436 22240028 22281455 + 102008454 AGCD01034088;AGCD01034089 MODEL 8720378 protein-coding LOC102006569 olfactory receptor 51L1-like NW_004955414 21331309 21332259 - 102006569 AGCD01015415;XM_005380496 XP_005380553 MODEL 9054138 protein-coding LOC102005516 uncharacterized LOC102005516 NW_004955442 7211768 7238684 + 102005516 AGCD01037621;XM_013517646 XP_013373100 MODEL 9033826 protein-coding LOC102010688 olfactory receptor 52D1-like NW_004955414 21652761 21653761 + 102010688 AGCD01015425;XM_005380102 XP_005380159 MODEL 8928568 protein-coding Smc5 structural maintenance of chromosomes 5 ENCODES a protein that exhibits DNA secondary structure binding (ortholog); INVOLVED IN cellular senescence (ortholog); chromosome condensation (ortholog); chromosome segregation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); Mosaic Variegated Aneuploidy Syndrome 6 (ortholog); FOUND IN cell junction (ortholog); chromosome, centromeric region (ortholog); chromosome, telomeric region (ortholog) NW_004955434 2742276 2848384 - 102007149 AGCD01032105;AGCD01032106;AGCD01032107;AGCD01032108;AGCD01032109;AGCD01032110;GBBH01011429;GBDJ01164340;XM_005388744;XM_013516362 XP_005388801;XP_013371816 MODEL 8836794 protein-coding Purb purine rich element binding protein B ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955456 7322973 7323529 + 102008380 AGCD01046407;GBDJ01139895;XM_013520514 XP_013375968 MODEL 39132264 snorna SNORD4B small nucleolar RNA, C/D box 4B 8927793 protein-coding Slc50a1 solute carrier family 50 member 1 ENCODES a protein that exhibits glucoside transmembrane transporter activity (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN endomembrane system (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955545 1617725 1620804 + 102026355 AGCD01071863;GBCQ01141801;XM_005411573;XM_005411574;XM_005411575;XM_013508366;XM_013508367 XP_005411630;XP_005411631;XP_005411632;XP_013363820;XP_013363821 MODEL 8944498 ncrna LOC102006949 uncharacterized LOC102006949 NW_004955528 1918029 1919886 + 102006949 AGCD01069576;GBCQ01125233;XR_264700 MODEL 8717993 protein-coding Rtl1 retrotransposon Gag like 1 INVOLVED IN angiogenesis (ortholog); embryonic placenta development (ortholog); gene expression (ortholog); ASSOCIATED WITH Kagami-Ogata syndrome (ortholog); FOUND IN Z disc (ortholog) NW_004955538 177078 181557 - 102020050 AGCD01070991;XM_005410721 XP_005410778 MODEL 9055627 pseudo LOC102009574 40S ribosomal protein S12 pseudogene NW_004955406 11910786 11911430 - 102009574 AGCD01005898 MODEL 9027280 protein-coding Prp4k pre-mRNA processing factor kinase PRP4K ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN positive regulation of hippo signaling (ortholog); positive regulation of protein export from nucleus (ortholog); regulation of mitotic cell cycle spindle assembly checkpoint (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); chromosome (ortholog); kinetochore (ortholog) NW_004955465 9359634 9392913 - 102012619 AGCD01050491;AGCD01050492;GBBH01026999;XM_005398892;XR_001236750;XR_263254;XR_263256;XR_263258;XR_263259;XR_263260 XP_005398949 MODEL 8718651 protein-coding LOC102015656 zinc finger protein 709-like NW_004955432 4541720 4566319 + 102015656 AGCD01030725;AGCD01030726;GBDF01013752;XM_013515929;XM_013515931 XP_013371383;XP_013371385 MODEL 8705945 protein-coding LOC102012698 zinc finger protein 709-like NW_004955569 603589 617354 + 102012698 AGCD01074601;AGCD01074602;XM_013509369 XP_013364823 MODEL 8775547 protein-coding Rasl10a RAS like family 10 member A ASSOCIATED WITH Breast Cancer, Familial (ortholog); vestibular schwannomatosis (ortholog) NW_004955455 3618656 3621299 - 102005224 AGCD01045640;AGCD01045641;GBDF01268764;XM_005396200 XP_005396257 MODEL 9006267 protein-coding Tsen34 tRNA splicing endonuclease subunit 34 PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH autosomal recessive intellectual developmental disorder 57 (ortholog); Deglutition Disorders (ortholog); intellectual disability (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955604 84072 89419 - 102011716 AGCD01076861;GBCE01054099;XM_005414852;XM_005414853;XM_005414854;XM_005414855;XM_013510089 XP_005414909;XP_005414910;XP_005414911;XP_005414912;XP_013365543 MODEL 8756955 protein-coding P2rx2 purinergic receptor P2X 2 ENCODES a protein that exhibits ATP binding (ortholog); cadmium ion binding (ortholog); cobalt ion binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); chemical synaptic transmission (ortholog); detection of hypoxic conditions in blood by carotid body chemoreceptor signaling (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 41 (ortholog); colorectal cancer (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); dendritic spine (ortholog) NW_004955482 418101 422058 - 102020446 AGCD01057172;GBDF01077337;XM_013503644;XM_013503645 XP_013359098;XP_013359099 MODEL 8841646 protein-coding Rab5if RAB5 interacting factor INVOLVED IN mitochondrial respirasome assembly (ortholog); multi-pass transmembrane protein insertion into ER membrane (ortholog); ASSOCIATED WITH craniofacial dysmorphism, skeletal anomalies, and impaired intellectual development syndrome 2 (ortholog); craniofacial dysmorphism, skeletal anomalies, and mental retardation syndrome (ortholog); focal epilepsy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); mitochondrion (ortholog); multi-pass translocon complex (ortholog) NW_004955422 25003195 25017380 - 102022094 AGCD01023239;AGCD01023240;GBDK01078344;XM_005384737 XP_005384794 MODEL 8770172 protein-coding Wdr46 WD repeat domain 46 INVOLVED IN ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); Disease Progression (ortholog); MHC class I deficiency (ortholog); FOUND IN nucleolus (ortholog); small-subunit processome (ortholog) NW_004955437 1840875 1848258 - 102030345 AGCD01034239;GBDF01087150;XM_013516886 XP_013372340 MODEL 8803814 protein-coding Limd2 LIM domain containing 2 ASSOCIATED WITH Breast Neoplasms (ortholog); Neoplasm Recurrence, Local (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955478 8120405 8121826 + 102024332 AGCD01056012;GBCQ01129620;GBDI01018647;XM_005402202 XP_005402259 MODEL 9065396 pseudo LOC102024392 keratin, type I cytoskeletal 18 pseudogene NW_004955445 5900650 5901318 - 102024392 AGCD01039475 MODEL 8822490 pseudo LOC102008050 mitochondrial import receptor subunit TOM22 homolog pseudogene NW_004955452 2641703 2642225 - 102008050 AGCD01043901 MODEL 8971700 pseudo LOC102011503 10 kDa heat shock protein, mitochondrial pseudogene NW_004955406 38802378 38802693 + 102011503 AGCD01006609 MODEL 8792758 protein-coding Pfkfb2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 ENCODES a protein that exhibits 6-phosphofructo-2-kinase activity (ortholog); fructose-2,6-bisphosphate 2-phosphatase activity (ortholog); kinase binding (ortholog); INVOLVED IN glucose catabolic process (ortholog); glycolytic process (ortholog); lactate biosynthetic process (ortholog); PARTICIPATES IN glycolysis pathway; ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 7 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955406 42573210 42601994 + 102025208 AGCD01006712;GBDJ01171540;XM_005375413;XM_005375414;XM_005375415;XM_013502822;XM_013502828;XM_013502845;XM_013502862;XR_001230756;XR_001230757 XP_005375470;XP_005375471;XP_005375472;XP_013358276;XP_013358282;XP_013358299;XP_013358316 MODEL 9013193 protein-coding Pde6b phosphodiesterase 6B INVOLVED IN detection of light stimulus (ortholog); entrainment of circadian clock by photoperiod (ortholog); retina development in camera-type eye (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; visual phototransduction pathway; ASSOCIATED WITH Animal Disease Models (ortholog); cherubism (ortholog); cone-rod dystrophy (ortholog); FOUND IN photoreceptor outer segment (ortholog) NW_004955514 234972 279420 + 102006266 AGCD01067002;AGCD01067003;AGCD01067004;AGCD01067005;GBDF01265565;XM_005408671 XP_005408728 MODEL 39133493 snrna U4 U4 spliceosomal RNA 8718368 protein-coding Tinag tubulointerstitial nephritis antigen INVOLVED IN cell adhesion (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); FOUND IN basement membrane (ortholog) NW_004955411 1718969 1809370 - 102006107 AGCD01011487;AGCD01011488;AGCD01011489;AGCD01011490;GBCQ01040782;XM_005377590;XM_013510703 XP_005377647;XP_013366157 MODEL 8762763 protein-coding Slc26a3 solute carrier family 26 member 3 ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); chloride transmembrane transporter activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); INVOLVED IN cellular response to cAMP (ortholog); intracellular pH elevation (ortholog); membrane hyperpolarization (ortholog); PARTICIPATES IN cimetidine pharmacodynamics pathway; esomeprazole pharmacodynamics pathway; famotidine pharmacodynamics pathway; ASSOCIATED WITH Congenital Infantile Lactic Acidosis due to LAD Deficiency (ortholog); congenital secretory chloride diarrhea 1 (ortholog); diarrhea (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); membrane (ortholog) NW_004955410 12102356 12128620 - 102007745 AGCD01010844;GBCQ01075050;XM_005377290 XP_005377347 MODEL 39131735 snorna SNORA70 Small nucleolar RNA SNORA70 9025720 protein-coding LOC102009577 keratin-associated protein 20-2-like NW_004955407 30220342 30220545 + 102009577 AGCD01007628;XM_005375648 XP_005375705 MODEL 8891858 protein-coding Rtl4 retrotransposon Gag like 4 INVOLVED IN cognition (ortholog); norepinephrine metabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955490 3403958 3497789 - 102029300 AGCD01060166;AGCD01060167;AGCD01060168;GBDF01086720;XM_013504514 XP_013359968 MODEL 10254417 ncrna LOC106149878 uncharacterized LOC106149878 NW_004955456 12524947 12527664 - 106149878 AGCD01046568;XR_001236337 MODEL 8860404 protein-coding Reep5 receptor accessory protein 5 INVOLVED IN endoplasmic reticulum membrane organization (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum tubular network (ortholog); junctional sarcoplasmic reticulum membrane (ortholog) NW_004955418 2504028 2539574 + 102024676 AGCD01018771;AGCD01018772;GBDJ01073123;GBDK01008237;XM_005382341 XP_005382398 MODEL 8912011 pseudo LOC102012703 transmembrane protease serine 11E-like NW_004955447 5103263 5144409 + 102012703 AGCD01040741;AGCD01040742;AGCD01040743 MODEL 8964151 pseudo LOC102011910 WD repeat-containing protein 25-like NW_004955437 2585766 2597361 - 102011910 AGCD01034277;AGCD01034278 MODEL 8959144 protein-coding Pate2 prostate and testis expressed 2 ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog); FOUND IN extracellular space (ortholog) NW_004955412 26842719 26844208 - 102004465 AGCD01013218;GBDF01020011;XM_013510991 XP_013366445 MODEL 8854809 protein-coding Rasl10b RAS like family 10 member B INVOLVED IN positive regulation of peptide hormone secretion (ortholog); regulation of systemic arterial blood pressure by atrial natriuretic peptide (ortholog); ASSOCIATED WITH peroxisome biogenesis disorder 3A (ortholog); polycystic ovary syndrome (ortholog) NW_004955481 10183635 10192155 + 102019805 AGCD01057138;GBCB01022088;GBCE01123565;XM_005402887 XP_005402944 MODEL 9035971 protein-coding Plagl1 PLAG1 like zinc finger 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); regulation of gene expression (ortholog); skeletal muscle cell differentiation (ortholog); ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 4 (ortholog); myoepithelioma (ortholog); Stomach Neoplasms (ortholog); FOUND IN Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog); nuclear body (ortholog) NW_004955436 16452797 16511872 + 102005503 AGCD01033919;AGCD01033920;GBBH01224118;XM_013516703 XP_013372157 MODEL 8751383 protein-coding LOC102024394 uncharacterized LOC102024394 NW_004955570 564487 673072 + 102024394 AGCD01074742;AGCD01074743;AGCD01074744;AGCD01074745;AGCD01074746;AGCD01074747;AGCD01074748;AGCD01074749;AGCD01074750;AGCD01074751;AGCD01074752;AGCD01074753;AGCD01074754;XM_013509383 XP_013364837 MODEL 8827241 protein-coding Rab6a RAB6A, member RAS oncogene family ENCODES a protein that exhibits ATPase activator activity (ortholog); ATPase binding (ortholog); GTP binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); early endosome to Golgi transport (ortholog); peptidyl-cysteine methylation (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog); FOUND IN acrosomal membrane (ortholog); ciliary basal body (ortholog); cytoplasmic vesicle (ortholog) NW_004955414 17758071 17806727 + 102013278 AGCD01015251;AGCD01015252;AGCD01015253;AGCD01015254;AGCD01015255;GBDJ01023296;XM_005379939;XM_005379940 XP_005379996;XP_005379997 MODEL 8989629 protein-coding Psmd2 proteasome 26S subunit ubiquitin receptor, non-ATPase 2 ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); congenital disorder of glycosylation Id (ortholog); Currarino syndrome (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog); proteasome regulatory particle (ortholog) NW_004955420 23184914 23194809 - 102023604 AGCD01021233;GBDK01003599;XM_005383335 XP_005383392 MODEL 8791025 pseudo LOC102005525 protein kinase C iota type pseudogene NW_004955445 18126528 18128715 + 102005525 AGCD01039898 MODEL 8765502 protein-coding Enoph1 enolase-phosphatase 1 ENCODES a protein that exhibits acireductone synthase activity (ortholog); INVOLVED IN L-methionine salvage from methylthioadenosine (ortholog); ASSOCIATED WITH chromosome 4q21 deletion syndrome (ortholog); pneumoconiosis (ortholog) NW_004955433 6522663 6549352 + 102006942 AGCD01031540;AGCD01031541;GBBH01186039;GBDI01188550;XM_005388244 XP_005388301 MODEL 8972225 protein-coding LOC102008052 endogenous retrovirus group K member 21 Rec protein-like NW_004955405 858916 862820 + 102008052 AGCD01004588;GBDF01277735;XM_005374249 XP_005374306 MODEL 8999609 protein-coding Snx9 sorting nexin 9 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); Arp2/3 complex binding (ortholog); identical protein binding (ortholog); INVOLVED IN cleavage furrow formation (ortholog); endocytosis (ortholog); endosomal transport (ortholog); ASSOCIATED WITH blepharophimosis (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN clathrin-coated pit (ortholog); clathrin-coated vesicle (ortholog); cuticular plate (ortholog) NW_004955439 4422385 4503408 - 102015984 AGCD01035709;AGCD01035710;AGCD01035711;GBDI01118897;XM_005390533 XP_005390590 MODEL 8864242 protein-coding Srpx2 sushi repeat containing protein X-linked 2 ENCODES a protein that exhibits hepatocyte growth factor binding (ortholog); identical protein binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN cell motility (ortholog); cell-cell adhesion (ortholog); positive regulation of cell migration involved in sprouting angiogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); developmental and epileptic encephalopathy 9 (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); excitatory synapse (ortholog) NW_004955503 6795793 6817779 + 102020822 AGCD01064770;GBCQ01123552;XM_005406933;XM_005406934;XM_013505861 XP_005406990;XP_005406991;XP_013361315 MODEL 39133366 snorna SNORD5 small nucleolar RNA, C/D box 5 10240828 ncrna LOC106147045 uncharacterized LOC106147045 NW_004955513 4626661 4627653 + 106147045 AGCD01066937;GBCB01009614;XR_001231744 MODEL 8707836 protein-coding Slc51a solute carrier family 51 member A ENCODES a protein that exhibits bile acid transmembrane transporter activity (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); bile acid secretion (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cholestasis (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); FOUND IN basolateral plasma membrane (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955420 12452562 12463369 + 102009507 AGCD01020865;GBDF01222832;XM_005383122;XM_005383123;XM_013513396;XM_013513397 XP_005383179;XP_005383180;XP_013368850;XP_013368851 MODEL 8999017 protein-coding Pou3f4 POU class 3 homeobox 4 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); double-stranded DNA binding (ortholog); minor groove of adenine-thymine-rich DNA binding (ortholog); INVOLVED IN cochlea morphogenesis (ortholog); forebrain neuron differentiation (ortholog); inner ear development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Deafness (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955529 2726121 2727311 + 102020605 AGCD01069754;GBCB01037300;XM_005410076 XP_005410133 MODEL 8749942 protein-coding Pms2 PMS1 homolog 2, mismatch repair system component ENCODES a protein that exhibits DNA binding (ortholog); MutSalpha complex binding (ortholog); single base insertion or deletion binding (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); mismatch repair (ortholog); PARTICIPATES IN altered mismatch repair pathway; colorectal cancer pathway; mismatch repair pathway; ASSOCIATED WITH autosomal recessive progressive external ophthalmoplegia 1 (ortholog); Brain Neoplasms (ortholog); breast cancer (ortholog); FOUND IN cytosol (ortholog); MutLalpha complex (ortholog); nucleoplasm (ortholog) NW_004955460 13762854 13791462 + 102023443 AGCD01048722;AGCD01048723;GBDF01225942;XM_005397895;XM_013521160 XP_005397952;XP_013376614 MODEL 8921979 protein-coding Btf3l4 basic transcription factor 3 like 4 NW_004955464 7044634 7069593 - 102022796 AGCD01050053;GBCE01116828;XM_005398593;XM_005398594;XM_005398595 XP_005398650;XP_005398651;XP_005398652 MODEL 8785654 pseudo LOC102010330 translationally-controlled tumor protein pseudogene NW_004955452 860898 861359 - 102010330 AGCD01043827 MODEL 8873254 pseudo LOC102023346 40S ribosomal protein S24 pseudogene NW_004955413 27173334 27173770 - 102023346 AGCD01014497 MODEL 9003734 ncrna LOC102003731 uncharacterized LOC102003731 NW_004955407 34830164 34933219 - 102003731 AGCD01007727;AGCD01007728;GBDF01191929;XR_259609 MODEL 8838468 protein-coding Rictor RPTOR independent companion of MTOR complex 2 ENCODES a protein that exhibits ATP binding (ortholog); enzyme-substrate adaptor activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); embryo development ending in birth or egg hatching (ortholog); lipid biosynthetic process (ortholog); PARTICIPATES IN mTOR signaling pathway; phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH breast ductal carcinoma (ortholog); colon cancer (ortholog); colorectal adenocarcinoma (ortholog); FOUND IN endoplasmic reticulum (ortholog); lysosome (ortholog); plasma membrane (ortholog) NW_004955426 23468112 23582587 - 102020032 AGCD01026644;AGCD01026645;AGCD01026646;GBDJ01139466;XM_005386229;XM_005386232;XM_013514942;XM_013514943;XM_013514945;XM_013514946;XM_013514947;XM_013514948;XM_013514949 XP_005386286;XP_005386289;XP_013370396;XP_013370397;XP_013370399;XP_013370400;XP_013370401;XP_013370402;XP_013370403 MODEL 8843933 protein-coding Pigo phosphatidylinositol glycan anchor biosynthesis class O ENCODES a protein that exhibits mannose-ethanolamine phosphotransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955472 1084932 1094243 + 102014348 AGCD01053373;GBCE01096334;XM_005401024;XM_005401025;XM_005401026;XM_013523034;XM_013523035 XP_005401081;XP_005401082;XP_005401083;XP_013378488;XP_013378489 MODEL 8980792 protein-coding Tra2b transformer 2 beta homolog ENCODES a protein that exhibits identical protein binding (ortholog); mRNA binding (ortholog); pre-mRNA binding (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cerebral cortex regionalization (ortholog); embryonic brain development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); macular degeneration (ortholog); FOUND IN nuclear inner membrane (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955420 21707618 21728186 + 102008321 AGCD01021159;GBDF01002404;XM_005383286 XP_005383343 MODEL 8965423 protein-coding P2rx3 purinergic receptor P2X 3 ENCODES a protein that exhibits ATP binding (ortholog); extracellularly ATP-gated monoatomic cation channel activity (ortholog); identical protein binding (ortholog); INVOLVED IN behavioral response to formalin induced pain (ortholog); behavioral response to pain (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH Hyperalgesia (ortholog); intellectual disability (ortholog); Nervous System Trauma (ortholog); FOUND IN axon (ortholog); dendritic spine (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog) NW_004955511 2389717 2410968 + 102015429 AGCD01066401;GBDF01291113;XM_005407988;XM_005407989;XM_005407990;XM_005407991 XP_005408045;XP_005408046;XP_005408047;XP_005408048 MODEL 39131524 protein-coding RTL5 retrotransposon Gag like 5 8812703 protein-coding LOC102011071 PRAME family member 8-like NW_004955618 112533 125114 - 102011071 AGCD01077296;AGCD01077297;GBDF01153091;XM_005415002 XP_005415059 MODEL 9062423 pseudo LOC102017567 chromobox protein homolog 5 pseudogene NW_004955417 26988906 26990379 + 102017567 AGCD01018530 MODEL 8781231 ncrna LOC102008455 uncharacterized LOC102008455 NW_004955437 7726888 7728942 - 102008455 AGCD01034465;GBDF01111441;XR_261864;XR_261865 MODEL 8748447 pseudo LOC102023347 60S ribosomal protein L7 pseudogene NW_004955468 12719078 12719903 + 102023347 AGCD01052184;XM_005400226 MODEL 9060376 protein-coding Pate4 prostate and testis expressed 4 ENCODES a protein that exhibits acetylcholine receptor regulator activity (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); regulation of neurotransmitter receptor activity (ortholog); response to wounding (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog); FOUND IN acrosomal vesicle (ortholog); extracellular space (ortholog) NW_004955412 26912925 26914668 + 102024779 AGCD01013224;GBDF01280505;XM_013510981 XP_013366435 MODEL 9059939 protein-coding Smc6 structural maintenance of chromosomes 6 ENCODES a protein that exhibits DNA secondary structure binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN cellular senescence (ortholog); DNA damage response (ortholog); negative regulation by host of viral genome replication (ortholog); ASSOCIATED WITH Laterality Defects, Autosomal Dominant (ortholog); FOUND IN chromosome, centromeric region (ortholog); chromosome, telomeric region (ortholog); interchromatin granule (ortholog) NW_004955469 456023 552794 - 102006648 AGCD01052223;AGCD01052224;AGCD01052225;AGCD01052226;AGCD01052227;GBBH01150724;GBDK01281602;XM_013522645 XP_013378099 MODEL 9025547 protein-coding Purg purine rich element binding protein G ASSOCIATED WITH Werner syndrome (ortholog); FOUND IN synapse (ortholog) NW_004955463 7460533 7495106 - 102028169 AGCD01049732;AGCD01049733;AGCD01049734;GBDF01087359;GBDF01304571;XM_005398386 XP_005398443 MODEL 8848861 ncrna LOC102006956 uncharacterized LOC102006956 NW_004955438 989747 1006079 + 102006956 AGCD01034966;AGCD01034967;AGCD01034968;GBDF01002597;XR_001235135;XR_261908;XR_261909 MODEL 8902132 protein-coding Pfkfb3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 ENCODES a protein that exhibits 6-phosphofructo-2-kinase activity (ortholog); INVOLVED IN apoptotic process (ortholog); fructose 2,6-bisphosphate metabolic process (ortholog); glial cell differentiation (ortholog); PARTICIPATES IN glycolysis pathway; hypoxia inducible factor pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); Arsenic Poisoning (ortholog); extrinsic cardiomyopathy (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955421 22762290 22868677 + 102003351 AGCD01022150;AGCD01022151;AGCD01022152;AGCD01022153;AGCD01022154;AGCD01022155;AGCD01022156;AGCD01022157;AGCD01022158;AGCD01022159;GBDF01126277;XM_005383866;XM_013513716 XP_005383923;XP_013369170 MODEL 8715189 protein-coding Pde6c phosphodiesterase 6C INVOLVED IN phototransduction, visible light (ortholog); retinal cone cell development (ortholog); sensory perception of light stimulus (ortholog); PARTICIPATES IN visual phototransduction pathway; ASSOCIATED WITH achromatopsia (ortholog); Achromatopsia 1 (ortholog); Achromatopsia 5 (ortholog) NW_004955507 129678 179586 + 102029539 AGCD01065463;AGCD01065464;GBDF01128897;XM_005407518;XM_005407519 XP_005407575;XP_005407576 MODEL 8794313 ncrna LOC102021635 uncharacterized LOC102021635 NW_004955462 9120697 9137546 + 102021635 AGCD01049332;GBDF01013525;XR_263109 MODEL 8844704 protein-coding Slc26a4 solute carrier family 26 member 4 ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); iodide transmembrane transporter activity (ortholog); INVOLVED IN inorganic anion transport (ortholog); iodide transport (ortholog); regulation of pH (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH Acidoses (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 4 (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); extracellular exosome (ortholog) NW_004955410 12008067 12057147 + 102006433 AGCD01010841;AGCD01010842;AGCD01010843;GBCE01014855;XM_005377285;XM_005377286 XP_005377342;XP_005377343 MODEL 8907865 protein-coding Wdr47 WD repeat domain 47 INVOLVED IN adult locomotory behavior (ortholog); anterior commissure morphogenesis (ortholog); autophagy (ortholog); ASSOCIATED WITH autistic disorder (ortholog); hereditary spastic paraplegia 63 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955435 12414964 12479883 - 102022322 AGCD01033147;AGCD01033148;GBDI01324335;XM_005388841;XM_013516532;XM_013516533;XM_013516534;XM_013516535;XM_013516536 XP_005388898;XP_013371986;XP_013371987;XP_013371988;XP_013371989;XP_013371990 MODEL 8812809 protein-coding Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN dosage compensation by inactivation of X chromosome (ortholog); inactivation of paternal X chromosome by genomic imprinting (ortholog); negative regulation of double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH Anosmia (ortholog); Arhinia, Choanal Atresia, and Microphthalmia (ortholog); Chediak-Higashi syndrome (ortholog); FOUND IN Barr body (ortholog); chromosome, telomeric region (ortholog); nuclear body (ortholog) NW_004955402 7544265 7661191 - 102016334 AGCD01000178;AGCD01000179;AGCD01000180;GBBH01005054;XM_005373146 XP_005373203 MODEL 8850610 protein-coding Lime1 Lck interacting transmembrane adaptor 1 ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); regulation of canonical NF-kappaB signal transduction (ortholog); regulation of MAP kinase activity (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN B cell receptor complex (ortholog) NW_004955528 490319 492943 - 102006278 AGCD01069536;GBCQ01125791;XM_005409949;XM_005409950;XM_005409951;XM_013507446;XM_013507447;XM_013507448 XP_005410006;XP_005410007;XP_005410008;XP_013362900;XP_013362901;XP_013362902 MODEL 8763413 protein-coding ND5 NADH dehydrogenase subunit 5 MT 11751 13574 + 15822233 JX312692 AFQ55787;YP_008080755 REVIEWED 8965289 pseudo LOC102010691 nudC domain-containing protein 2-like NW_004955475 11122125 11122610 - 102010691 AGCD01055143 MODEL 9007780 protein-coding Rida reactive intermediate imine deaminase A ENCODES a protein that exhibits cation binding (ortholog); identical protein binding (ortholog); long-chain fatty acid binding (ortholog); INVOLVED IN G1 to G0 transition (ortholog); kidney development (ortholog); lung development (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); Experimental Liver Cirrhosis (ortholog); Experimental Liver Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial matrix (ortholog) NW_004955417 13810596 13822982 - 102010482 AGCD01018191;GBDJ01312104;XM_005381848 XP_005381905 MODEL 8716919 protein-coding LOC102019119 zinc finger protein 501-like NW_004955569 1687711 1702017 + 102019119 AGCD01074676;AGCD01074677;XM_013509378 XP_013364832 MODEL 8965781 protein-coding ND6 NADH dehydrogenase subunit 6 MT 13564 14091 - 15822213 JX312692 AFQ55788;YP_008080756 REVIEWED 8777948 pseudo LOC102024396 coiled-coil domain-containing protein 152-like NW_004955575 268995 270575 + 102024396 AGCD01075210 MODEL 39133494 snrna U4 U4 spliceosomal RNA 39131734 snorna SNORA70 Small nucleolar RNA SNORA70 8939046 ncrna LOC102023349 uncharacterized LOC102023349 NW_004955473 201154 206965 - 102023349 AGCD01053833;GBDF01118988;XR_263576 MODEL 151707875 snorna SNORD52 small nucleolar RNA, C/D box 52 8766878 protein-coding Prpf18 pre-mRNA processing factor 18 INVOLVED IN negative regulation of protein metabolic process (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH CORPUS CALLOSUM, AGENESIS OF, WITH FACIAL ANOMALIES AND CEREBELLAR ATAXIA (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog) NW_004955429 20581457 20613258 - 102009742 AGCD01028986;GBBH01209489;XM_005387160;XM_013515516 XP_005387217;XP_013370970 MODEL 8793518 protein-coding Soat1 sterol O-acyltransferase 1 ENCODES a protein that exhibits cholesterol binding (ortholog); cholesterol O-acyltransferase activity (ortholog); fatty-acyl-CoA binding (ortholog); INVOLVED IN cholesterol efflux (ortholog); cholesterol homeostasis (ortholog); cholesterol metabolic process (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); aortic atherosclerosis (ortholog); atherosclerosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955406 18644351 18708666 + 102022462 AGCD01006051;AGCD01006052;AGCD01006053;AGCD01006054;AGCD01006055;AGCD01006056;AGCD01006057;GBBH01180582;GBDJ01300596;XM_013521162 XP_013376616 MODEL 8918958 protein-coding Serpini1 serpin family I member 1 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN positive regulation of neuron projection development (ortholog); ASSOCIATED WITH cerebral cavernous malformation (ortholog); cerebral cavernous malformation 3 (ortholog); familial encephalopathy with neuroserpin inclusion bodies (ortholog); FOUND IN cytoplasmic vesicle lumen (ortholog); extracellular space (ortholog); neuronal cell body (ortholog) NW_004955448 16947375 16982114 + 102012485 AGCD01041705;AGCD01041706;AGCD01041707;GBBH01191602;XM_005393142;XM_013518652;XM_013518653 XP_005393199;XP_013374106;XP_013374107 MODEL 8978965 protein-coding Tsen54 tRNA splicing endonuclease subunit 54 INVOLVED IN tRNA splicing, via endonucleolytic cleavage and ligation (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH amblyopia (ortholog); cerebellar hypoplasia (ortholog); Deglutition Disorders (ortholog) NW_004955553 2367476 2376704 + 102027464 AGCD01072935;GBDF01083927;XM_005412297;XM_013508627;XM_013508628 XP_005412354;XP_013364081;XP_013364082 MODEL 9003830 protein-coding LOC102009579 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase NW_004955456 8783121 8961174 + 102009579 AGCD01046502;AGCD01046503;AGCD01046504;GBDF01082105;XM_005396723;XM_013520568;XM_013520569;XM_013520570;XM_013520571 XP_005396780;XP_013376022;XP_013376023;XP_013376024;XP_013376025 MODEL 8982554 protein-coding LOC102018708 free fatty acid receptor 2 NW_004955468 4681077 4683818 + 102018708 AGCD01051919;XM_005400052;XM_013522278;XM_013522279 XP_005400109;XP_013377732;XP_013377733 MODEL 8876545 ncrna LOC102012707 uncharacterized LOC102012707 NW_004955584 1044910 1047589 + 102012707 AGCD01075977;GBBH01222868;XR_001232516 MODEL 9023981 protein-coding LOC102006574 profilin-1-like NW_004955475 4545432 4545893 + 102006574 AGCD01054882;GBDF01303632;XM_005401561 XP_005401618 MODEL 8821884 pseudo LOC102011911 citrate synthase, mitochondrial-like NW_004955438 13790119 13791348 - 102011911 AGCD01035308 MODEL 8789208 pseudo LOC102009581 rRNA-processing protein UTP23 homolog pseudogene NW_004955458 15500020 15501069 + 102009581 AGCD01047897 MODEL 8742549 protein-coding Wdr48 WD repeat domain 48 ENCODES a protein that exhibits deubiquitinase activator activity (ortholog); DNA binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN DNA damage response (ortholog); double-strand break repair via homologous recombination (ortholog); embryonic organ development (ortholog); ASSOCIATED WITH cognitive disorder (ortholog); hereditary spastic paraplegia (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); nucleus (ortholog) NW_004955427 24873616 24917691 - 102026998 AGCD01027525;GBDF01050505;XM_005386566;XM_005386567;XM_013515075 XP_005386623;XP_005386624;XP_013370529 MODEL 8998848 pseudo LOC102011081 SH3 domain-binding glutamic acid-rich-like protein pseudogene NW_004955406 24054455 24054920 + 102011081 AGCD01006188 MODEL 9058628 pseudo LOC102011913 60S ribosomal protein L35 pseudogene NW_004955545 891588 891958 - 102011913 AGCD01071824 MODEL 10170186 protein-coding Rasl11a RAS like family 11 member A INVOLVED IN positive regulation of transcription by RNA polymerase I (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); endometriosis (ortholog); FOUND IN nucleolus (ortholog) NW_004955497 6695354 6697425 + 106146843 AGCD01062645;GBDF01251613;GBDJ01086656;XM_013505509 XP_013360963 MODEL 8707347 ncrna LOC102015660 uncharacterized LOC102015660 NW_004955434 17409506 17447739 + 102015660 AGCD01032535;AGCD01032536;AGCD01032537;GBDJ01404981;XR_001234793;XR_001234794;XR_001234795;XR_001234796;XR_261625 MODEL 8906960 protein-coding LOC102008062 keratin-associated protein 10-10-like NW_004955407 41537601 41546262 - 102008062 AGCD01007870;XM_013505443 XP_013360897 MODEL 8950643 pseudo LOC102008467 E3 ubiquitin-protein ligase HECTD3 pseudogene NW_004955442 14068251 14074752 - 102008467 AGCD01037801 MODEL 8727744 pseudo LOC102019123 arylacetamide deacetylase-like NW_004955448 3049316 3050504 + 102019123 AGCD01041301 MODEL 8985440 pseudo LOC102011914 N-alpha-acetyltransferase 50 pseudogene NW_004955441 5500863 5501537 + 102011914 AGCD01036878 MODEL 8817271 protein-coding Slc51b SLC51 subunit beta ENCODES a protein that exhibits bile acid transmembrane transporter activity (ortholog); protein heterodimerization activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); bile acid secretion (ortholog); positive regulation of protein exit from endoplasmic reticulum (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); cholestasis (ortholog); cognitive disorder (ortholog); FOUND IN basolateral plasma membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955450 10365554 10374209 - 102009562 AGCD01042614;AGCD01042615;GBCQ01066742;XM_005393727 XP_005393784 MODEL 8769283 protein-coding Btg1 BTG anti-proliferation factor 1 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN cell population proliferation (ortholog); negative regulation of cell population proliferation (ortholog); positive regulation of angiogenesis (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); juvenile rheumatoid arthritis (ortholog); multiple myeloma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955405 29206889 29209407 - 102021082 AGCD01005248;GBCB01021122;XM_005374452 XP_005374509 MODEL 8762685 protein-coding Reep6 receptor accessory protein 6 INVOLVED IN detection of light stimulus involved in visual perception (ortholog); regulation of intracellular transport (ortholog); ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog); fundus dystrophy (ortholog); FOUND IN apical part of cell (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955764 17640 22996 - 102005875 AGCD01078306;GBCE01186476;XM_005415097;XM_005415099;XM_005415100;XM_013510188 XP_005415154;XP_005415156;XP_005415157;XP_013365642 MODEL 8951451 pseudo LOC102011915 solute carrier family 35 member G1-like NW_004955549 2589395 2589895 + 102011915 AGCD01072478 MODEL 8725840 protein-coding Serpini2 serpin family I member 2 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); ASSOCIATED WITH Shwachman-Diamond syndrome (ortholog) NW_004955448 16679885 16694484 - 102027247 AGCD01041701;GBBH01104730;XM_005393166 XP_005393223 MODEL 8901470 protein-coding LOC102012708 uncharacterized LOC102012708 NW_004955449 15463379 15557849 - 102012708 AGCD01042194;AGCD01042195;AGCD01042196;AGCD01042197;GBDK01148150;XM_005393396;XM_005393397;XR_001235813;XR_001235814;XR_262508;XR_262509 XP_005393453;XP_005393454 MODEL 8922769 protein-coding Psmd3 proteasome 26S subunit, non-ATPase 3 ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); hypertrophic cardiomyopathy 25 (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); proteasome accessory complex (ortholog) NW_004955451 14666882 14685573 + 102007615 AGCD01043565;AGCD01043566;GBBH01033601;GBDF01005924;XM_005394339 XP_005394396 MODEL 8787750 protein-coding Trmt1l tRNA methyltransferase 1L INVOLVED IN adult behavior (ortholog); adult locomotory behavior (ortholog); tRNA N2-guanine methylation (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); megacolon (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955406 23735715 23772010 - 102008816 AGCD01006182;AGCD01006183;AGCD01006184;GBDF01007025;XM_005375072;XM_005375073;XM_013521695;XM_013521698 XP_005375129;XP_005375130;XP_013377149;XP_013377152 MODEL 8995513 protein-coding P2rx4 purinergic receptor P2X 4 ENCODES a protein that exhibits ATP binding (ortholog); ATP-gated ion channel activity (ortholog); cadherin binding (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); behavioral response to pain (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH congestive heart failure (ortholog); COVID-19 (ortholog); epilepsy (ortholog); FOUND IN apical part of cell (ortholog); axon (ortholog); cell body (ortholog) NW_004955482 7031874 7039026 - 102003766 AGCD01057435;GBBH01062763;GBCB01110807;XM_013503678 XP_013359132 MODEL 8840768 protein-coding Btg2 BTG anti-proliferation factor 2 ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); associative learning (ortholog); cellular response to phorbol 13-acetate 12-myristate (ortholog); ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); brain ischemia (ortholog); breast cancer (ortholog) NW_004955406 39303221 39307308 + 102011732 AGCD01006625;GBCE01078173;XM_005375265 XP_005375322 MODEL 8887487 protein-coding Trabd TraB domain containing ENCODES a protein that exhibits mitochondrion-mitochondrion outer membrane tether activity (ortholog); INVOLVED IN mitochondrial fusion (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955413 33229796 33233686 + 102023348 AGCD01014658;GBCE01114750;GBCQ01098684;XM_005379547;XM_005379548 XP_005379604;XP_005379605 MODEL 8965931 pseudo LOC102009587 39S ribosomal protein L30, mitochondrial pseudogene NW_004955464 11215198 11215862 + 102009587 AGCD01050139 MODEL 39133495 snrna U4 U4 spliceosomal RNA 9030090 protein-coding Rif1 replication timing regulatory factor 1 INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); DNA damage response (ortholog); negative regulation of double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); arthrogryposis multiplex congenita-6 (ortholog); congenital muscular dystrophy (ortholog); FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); chromosome, telomeric repeat region (ortholog) NW_004955440 16977710 17047809 + 102019327 AGCD01036555;AGCD01036556;AGCD01036557;AGCD01036558;GBDF01086865;XM_013517488 XP_013372942 MODEL 8793980 protein-coding Ndc1 NDC1 transmembrane nucleoporin ENCODES a protein that exhibits structural constituent of nuclear pore (ortholog); INVOLVED IN homologous chromosome pairing at meiosis (ortholog); nuclear pore complex assembly (ortholog); nuclear pore localization (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); Weight Gain (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); nuclear envelope (ortholog) NW_004955464 5424710 5476657 + 102010680 AGCD01050006;AGCD01050007;AGCD01050008;AGCD01050009;GBDF01085204;XM_005398557 XP_005398614 MODEL 9010991 protein-coding Srr serine racemase ENCODES a protein that exhibits ATP binding (ortholog); calcium ion binding (ortholog); glycine binding (ortholog); INVOLVED IN D-serine biosynthetic process (ortholog); D-serine metabolic process (ortholog); L-serine metabolic process (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH Animal Disease Models (ortholog); Experimental Liver Cirrhosis (ortholog); lung adenocarcinoma (ortholog); FOUND IN apical part of cell (ortholog); cytoplasm (ortholog); neuronal cell body (ortholog) NW_004955481 919692 940066 - 102009835 AGCD01056816;AGCD01056817;AGCD01056818;GBDK01341785;XM_005402588;XM_013503364;XM_013503365;XM_013503366;XM_013503367;XM_013503368;XM_013503369;XM_013503370;XM_013503371;XM_013503372;XM_013503373;XM_013503374 XP_005402645;XP_013358818;XP_013358819;XP_013358820;XP_013358821;XP_013358822;XP_013358823;XP_013358824;XP_013358825;XP_013358826;XP_013358827;XP_013358828 MODEL 39132628 snorna SNORA70 Small nucleolar RNA SNORA70 8985804 protein-coding LOC102023351 skin secretory protein xP2-like NW_004955415 79838 125434 + 102023351 AGCD01015830;AGCD01015831;AGCD01015832;GBDF01276867;XM_013512119 XP_013367573 MODEL 8835980 protein-coding Pfkfb4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 ENCODES a protein that exhibits 6-phosphofructo-2-kinase activity (ortholog); fructose-2,6-bisphosphate 2-phosphatase activity (ortholog); PARTICIPATES IN glycolysis pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog) NW_004955532 606597 644238 - 102005299 AGCD01070140;AGCD01070141;AGCD01070142;GBBH01011275;XM_013507571 XP_013363025 MODEL 8927989 protein-coding LOC102011504 keratin-associated protein 8-1 NW_004955407 30527468 30528014 - 102011504 AGCD01007636;XM_005375654 XP_005375711 MODEL 8763051 protein-coding Slc26a5 solute carrier family 26 member 5 ENCODES a protein that exhibits chloride:bicarbonate antiporter activity (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); chloride transmembrane transport (ortholog); chloride transport (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 61 (ortholog); Deafness (ortholog); FOUND IN basolateral plasma membrane (ortholog); lateral plasma membrane (ortholog); lateral wall of outer hair cell (ortholog) NW_004955410 8358780 8414145 - 102017313 AGCD01010744;GBDF01207464;XM_005377231 XP_005377288 MODEL 9061538 protein-coding Pigp phosphatidylinositol glycan anchor biosynthesis class P ENCODES a protein that exhibits phosphatidylinositol N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog) NW_004955407 36178323 36185317 - 102013906 AGCD01007761;XM_013504675 XP_013360129 MODEL 8732373 protein-coding Limk1 LIM domain kinase 1 ENCODES a protein that exhibits heat shock protein binding (ortholog); protein serine/threonine kinase activity (ortholog); ubiquitin ligase inhibitor activity (ortholog); INVOLVED IN axon extension (ortholog); positive regulation of actin filament bundle assembly (ortholog); positive regulation of axon extension (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); High Myopia (ortholog); FOUND IN axonal growth cone (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955456 13751135 13773722 - 102020206 AGCD01046617;AGCD01046618;GBCB01130874;GBCE01065465;XM_013520581 XP_013376035 MODEL 8852351 protein-coding LOC102005530 arylacetamide deacetylase-like NW_004955448 2938773 2958946 + 102005530 AGCD01041296;AGCD01041297;AGCD01041298;AGCD01041299;GBCQ01129513;XM_005393035 XP_005393092 MODEL 8991053 pseudo LOC102017571 zinc finger protein 23 pseudogene NW_004955418 4269959 4271996 + 102017571 AGCD01018816 MODEL 8832226 protein-coding Tinagl1 tubulointerstitial nephritis antigen like 1 ENCODES a protein that exhibits cysteine-type peptidase activity (ortholog); laminin binding (ortholog); INVOLVED IN proteolysis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955452 9995658 10007418 + 102010121 AGCD01044267;GBCE01096097;XM_005395027;XM_005395028 XP_005395084;XP_005395085 MODEL 8827526 protein-coding Enosf1 enolase superfamily member 1 ENCODES a protein that exhibits L-fuconate dehydratase activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN carbohydrate catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); digenic dyskeratosis congenita (ortholog); Drug-Related Side Effects and Adverse Reactions (ortholog); FOUND IN mitochondrion (ortholog) NW_004955402 9266198 9297897 + 102023212 AGCD01000211;AGCD01000212;GBBH01158568;XM_005372673;XM_013519244;XM_013519282;XM_013519332;XM_013519378;XM_013519436;XM_013519451;XM_013519472;XM_013519499;XM_013519540 XP_005372730;XP_013374698;XP_013374736;XP_013374786;XP_013374832;XP_013374890;XP_013374905;XP_013374926;XP_013374953;XP_013374994 MODEL 8837138 ncrna LOC102024398 uncharacterized LOC102024398 NW_004955448 8864773 8881822 + 102024398 AGCD01041452;GBDF01303232;XR_262466 MODEL 8898142 protein-coding Patj PATJ crumbs cell polarity complex component INVOLVED IN establishment of apical/basal cell polarity (ortholog); microtubule organizing center organization (ortholog); positive regulation of epithelial cell migration (ortholog); ASSOCIATED WITH congenital disorder of glycosylation It (ortholog); intellectual disability (ortholog); Prostatic Neoplasms (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); bicellular tight junction (ortholog) NW_004955423 27408334 27637065 - 102012978 AGCD01024126;AGCD01024127;AGCD01024128;AGCD01024129;AGCD01024130;AGCD01024131;AGCD01024132;AGCD01024133;AGCD01024134;AGCD01024135;GBCE01009689;XM_005385343;XM_005385344;XM_013514443;XM_013514444;XM_013514445;XM_013514446;XM_013514447;XM_013514448 XP_005385400;XP_005385401;XP_013369897;XP_013369898;XP_013369899;XP_013369900;XP_013369901;XP_013369902 MODEL 8714119 pseudo LOC102012709 40S ribosomal protein S29 pseudogene NW_004955587 108587 108779 - 102012709 AGCD01076058 MODEL 8858709 pseudo LOC102015663 periphilin-1 pseudogene NW_004955529 437395 439074 - 102015663 AGCD01069635;XM_005410064;XM_005410065;XM_005410066 MODEL 8708415 protein-coding Pmvk phosphomevalonate kinase ENCODES a protein that exhibits ATP binding (ortholog); phosphomevalonate kinase activity (ortholog); INVOLVED IN cholesterol biosynthetic process (ortholog); isopentenyl diphosphate biosynthetic process, mevalonate pathway (ortholog); response to cholesterol (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); peroxisome (ortholog) NW_004955545 1421562 1440038 - 102015153 AGCD01071854;AGCD01071855;GBCB01025659;XM_005411529;XM_013508335 XP_005411586;XP_013363789 MODEL 8723692 protein-coding Pus1 pseudouridine synthase 1 ENCODES a protein that exhibits chromatin binding (ortholog); pseudouridine synthase activity (ortholog); steroid receptor RNA activator RNA binding (ortholog); INVOLVED IN mRNA pseudouridine synthesis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); tRNA pseudouridine synthesis (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); Disease Progression (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleolus (ortholog) NW_004955482 749265 756964 - 102024908 AGCD01057187;GBDF01159325;XM_005402971;XM_013503609;XM_013503610;XM_013503611;XM_013503612;XM_013503613 XP_005403028;XP_013359063;XP_013359064;XP_013359065;XP_013359066;XP_013359067 MODEL 8837092 ncrna LOC102021638 uncharacterized LOC102021638 NW_004955411 24539744 24554375 - 102021638 AGCD01012127;GBDF01145167;XR_259941 MODEL 9014819 ncrna LOC102019125 uncharacterized LOC102019125 NW_004955402 25007914 25012011 + 102019125 AGCD01000650;GBDF01105810;XR_259066 MODEL 9031049 ncrna LOC102008064 uncharacterized LOC102008064 NW_004955408 4366570 4372625 + 102008064 AGCD01008109;GBDF01296436;XR_001231915;XR_001231916;XR_001231917;XR_001231918;XR_259659 MODEL 8938138 protein-coding LOC102009589 olfactory receptor 8B12-like NW_004955412 25555457 25557190 - 102009589 AGCD01013160;XM_005378425 XP_005378482 MODEL 8833731 protein-coding Patl1 PAT1 homolog 1, processing body mRNA decay factor ENCODES a protein that exhibits poly(G) binding (ortholog); poly(U) RNA binding (ortholog); RNA binding (ortholog); INVOLVED IN deadenylation-dependent decapping of nuclear-transcribed mRNA (ortholog); P-body assembly (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN CCR4-NOT complex (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); cytosol (ortholog) NW_004955511 4090841 4119077 - 102010507 AGCD01066492;GBCB01023876;GBDK01137097;XM_013506460 XP_013361914 MODEL 9000332 ncrna LOC102018711 uncharacterized LOC102018711 NW_004955469 11293500 11308124 + 102018711 AGCD01052559;AGCD01052560;GBDF01306362;XR_263452 MODEL 8701115 protein-coding Soat2 sterol O-acyltransferase 2 ENCODES a protein that exhibits cholesterol binding (ortholog); cholesterol O-acyltransferase activity (ortholog); fatty-acyl-CoA binding (ortholog); INVOLVED IN cholesterol efflux (ortholog); cholesterol metabolic process (ortholog); cholesterol storage (ortholog); PARTICIPATES IN kidney failure pathway; ASSOCIATED WITH arteriosclerosis (ortholog); celiac disease (ortholog); cholelithiasis (ortholog); FOUND IN brush border (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955458 383123 394003 + 102012287 AGCD01047122;AGCD01047123;GBCQ01096818;XM_005397145;XM_005397147;XM_005397148;XM_005397150;XM_005397151;XM_013521027;XM_013521028 XP_005397202;XP_005397204;XP_005397205;XP_005397207;XP_005397208;XP_013376481;XP_013376482 MODEL 9024911 protein-coding Rtl5 retrotransposon Gag like 5 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955475 11499717 11504438 - 102012191 AGCD01055154;GBDJ01165951;GBDK01005230;XM_005401683 XP_005401740 MODEL 8872828 protein-coding Plagl2 PLAG1 like zinc finger 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN chylomicron assembly (ortholog); lipid metabolic process (ortholog); positive regulation of intrinsic apoptotic signaling pathway (ortholog); FOUND IN nucleus (ortholog) NW_004955422 28839021 28847255 + 102010704 AGCD01023372;GBCB01076356;GBDI01219915;XM_005384877 XP_005384934 MODEL 8784143 ncrna LOC102006577 uncharacterized LOC102006577 NW_004955417 25228937 25242091 - 102006577 AGCD01018475;GBDF01078277;XR_260491 MODEL 9012187 protein-coding Rab6b RAB6B, member RAS oncogene family ENCODES a protein that exhibits myosin V binding (ortholog); INVOLVED IN Golgi organization (ortholog); protein localization to Golgi membrane (ortholog); ASSOCIATED WITH Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN ciliary basal body (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955501 4751647 4781094 + 102026339 AGCD01064144;GBBH01065558;GBCQ01069711;XM_013505801 XP_013361255 MODEL 9055678 protein-coding Tsfm Ts translation elongation factor, mitochondrial INVOLVED IN regulation of mitochondrial translation (ortholog); ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); combined oxidative phosphorylation deficiency (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955458 5489551 5498572 + 102012162 AGCD01047494;AGCD01047495;GBDI01117542;XM_005397417;XM_005397418 XP_005397474;XP_005397475 MODEL 8826608 pseudo LOC102010693 charged multivesicular body protein 1b-like NW_004955416 11825639 11828480 - 102010693 AGCD01017192 MODEL 8902344 pseudo LOC102011085 dynein light chain 1, cytoplasmic-like NW_004955407 27230910 27231275 + 102011085 AGCD01007548 MODEL 10327791 ncrna LOC106149880 uncharacterized LOC106149880 NW_004955406 10615312 10662954 - 106149880 AGCD01005866;AGCD01005867;AGCD01005868;GBCE01106587;XR_001236339 MODEL 10255167 protein-coding LOC106147046 cuticle collagen 40-like NW_004955513 4148400 4149677 + 106147046 AGCD01066922;GBCE01085018;XM_013506702 XP_013362156 MODEL 9019867 pseudo LOC102010333 U1 small nuclear ribonucleoprotein C pseudogene NW_004955453 8264707 8265255 + 102010333 AGCD01044758;XM_005395715 MODEL 151707879 snorna SNORD53 small nucleolar RNA, C/D box 53 8807667 protein-coding Pde6d phosphodiesterase 6D ENCODES a protein that exhibits GTPase inhibitor activity (ortholog); small GTPase binding (ortholog); ASSOCIATED WITH genetic disease (ortholog); Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955453 3992160 4024695 + 102019465 AGCD01044672;GBCQ01092966;XM_005395388 XP_005395445 MODEL 9055972 protein-coding Psmd4 proteasome 26S subunit ubiquitin receptor, non-ATPase 4 ENCODES a protein that exhibits identical protein binding (ortholog); molecular adaptor activity (ortholog); ASSOCIATED WITH Dravet syndrome (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); proteasome accessory complex (ortholog) NW_004955588 607763 618040 + 102028482 AGCD01076117;GBDF01043329;XM_005414507;XM_005414508 XP_005414564;XP_005414565 MODEL 8933571 protein-coding Rasl11b RAS like family 11 member B ENCODES a protein that exhibits transforming growth factor beta receptor binding (ortholog); INVOLVED IN negative regulation of transforming growth factor beta receptor signaling pathway (ortholog) NW_004955447 17755277 17758827 - 102010750 AGCD01041134;GBCE01186100;GBDI01325397;XM_013518526 XP_013373980 MODEL 8721472 protein-coding LOC102024400 olfactory receptor 15-like NW_004955581 637852 638793 - 102024400 AGCD01075684;XM_013509726 XP_013365180 MODEL 8877199 protein-coding Smco1 single-pass membrane protein with coiled-coil domains 1 ASSOCIATED WITH autistic disorder (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); schizophrenia (ortholog) NW_004955420 12680494 12685018 - 102012968 AGCD01020884;GBCB01022329;XM_005383135 XP_005383192 MODEL 8883542 protein-coding Prpf19 pre-mRNA processing factor 19 ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-ubiquitin ligase activity (ortholog); INVOLVED IN DNA damage checkpoint signaling (ortholog); double-strand break repair via nonhomologous end joining (ortholog); lipid biosynthetic process (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Disease Progression (ortholog); genetic disease (ortholog); Hydrops Fetalis (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); DNA replication factor A complex (ortholog) NW_004955511 5546212 5552368 - 102003266 AGCD01066568;GBDF01006561;GBDI01004319;XM_005408116 XP_005408173 MODEL 8702509 protein-coding Rigi RNA sensor RIG-I ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); double-stranded DNA binding (ortholog); double-stranded RNA binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to exogenous dsRNA (ortholog); cytoplasmic pattern recognition receptor signaling pathway (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); Disease Progression (ortholog); distal arthrogryposis type 1A (ortholog); FOUND IN actin cytoskeleton (ortholog); bicellular tight junction (ortholog); cytoplasm (ortholog) NW_004955472 3093895 3135524 + 102017119 AGCD01053503;AGCD01053504;GBBH01063676;XM_013522945 XP_013378399 MODEL 153211032 snorna SNORD53B small nucleolar RNA, C/D box 53B 8867857 protein-coding LOC102008067 stereocilin NW_004955409 27019957 27035448 + 102008067 AGCD01010205;GBDF01030323;XM_005376944;XM_005376945 XP_005377001;XP_005377002 MODEL 9063794 protein-coding Wdr49 WD repeat domain 49 ASSOCIATED WITH prostate cancer (ortholog) NW_004955448 16701241 16840180 - 102011823 AGCD01041701;AGCD01041702;AGCD01041703;GBDK01313375;XM_013518658;XM_013518659;XM_013518660;XM_013518661;XM_013518662;XM_013518663 XP_013374112;XP_013374113;XP_013374114;XP_013374115;XP_013374116;XP_013374117 MODEL 8744767 protein-coding LOC102006578 olfactory receptor 1Q1-like NW_004955419 5347299 5348225 - 102006578 AGCD01019802;XM_005382525 XP_005382582 MODEL 8795030 protein-coding Pou4f1 POU class 4 homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cell migration in hindbrain (ortholog); cellular response to cytokine stimulus (ortholog); cellular response to estradiol stimulus (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); ATAXIA, INTENTION TREMOR, AND HYPOTONIA SYNDROME, CHILDHOOD-ONSET (ortholog); cervix uteri carcinoma in situ (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); neuron projection (ortholog) NW_004955404 28812762 28818024 + 102023975 AGCD01003964;AGCD01003965;GBDF01291045;XM_005374236 XP_005374293 MODEL 8978269 protein-coding Trabd2b TraB domain containing 2B ENCODES a protein that exhibits metalloendopeptidase activity (ortholog); Wnt-protein binding (ortholog); INVOLVED IN negative regulation of Wnt signaling pathway (ortholog); positive regulation of protein-containing complex assembly (ortholog); proteolysis (ortholog); FOUND IN nucleoplasm (ortholog); organelle membrane (ortholog); plasma membrane (ortholog) NW_004955464 10612515 10817725 + 102007093 AGCD01050127;GBCE01168317;XM_005398637 XP_005398694 MODEL 8824296 protein-coding Rab7a RAB7A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); bone resorption (ortholog); early endosome to late endosome transport (ortholog); PARTICIPATES IN autophagy pathway; interleukin-12 signaling pathway; ASSOCIATED WITH alkaptonuria (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); FOUND IN alveolar lamellar body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955429 15103792 15167498 - 102021694 AGCD01028794;AGCD01028795;AGCD01028796;GBBH01004537;XM_013515507 XP_013370961 MODEL 9015333 protein-coding P2rx5 purinergic receptor P2X 5 ENCODES a protein that exhibits ATP binding (ortholog); ATP-gated ion channel activity (ortholog); extracellularly ATP-gated monoatomic cation channel activity (ortholog); INVOLVED IN chloride transport (ortholog); monoatomic cation transmembrane transport (ortholog); positive regulation of calcium ion import across plasma membrane (ortholog); ASSOCIATED WITH Canavan disease (ortholog); FOUND IN plasma membrane (ortholog) NW_004955467 13125710 13140031 + 102019048 AGCD01051666;AGCD01051667;GBCB01097648;GBDI01327884;XM_005399710 XP_005399767 MODEL 39133496 snrna U4 U4 spliceosomal RNA 9005788 protein-coding Tsg101 tumor susceptibility 101 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); protein homodimerization activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell differentiation (ortholog); endosome to lysosome transport (ortholog); exosomal secretion (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); breast carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955414 33154812 33193769 - 102023023 AGCD01015799;AGCD01015800;GBCE01077499;XM_005380422;XM_005380423 XP_005380479;XP_005380480 MODEL 9027228 ncrna LOC102010334 uncharacterized LOC102010334 NW_004955406 19328963 19363689 - 102010334 AGCD01006077;GBDF01119607;XR_001236563;XR_001236565;XR_001236566;XR_001236567;XR_001236568;XR_001236569 MODEL 9018878 ncrna LOC102015664 uncharacterized LOC102015664 NW_004955437 9780174 9790963 - 102015664 AGCD01034543;GBDF01120701;XR_261871;XR_261872 MODEL 8871452 protein-coding Reg4 regenerating family member 4 ENCODES a protein that exhibits calcium ion binding (ortholog); heparin binding (ortholog); mannan binding (ortholog); INVOLVED IN response to bacterium (ortholog); ASSOCIATED WITH Hajdu-Cheney syndrome (ortholog); PHGDH deficiency (ortholog); Stomach Neoplasms (ortholog); FOUND IN cytoplasm (ortholog) NW_004955435 22886351 22895884 - 102018638 AGCD01033523;XM_005389090 XP_005389147 MODEL 8860096 pseudo LOC102009590 major facilitator superfamily domain-containing protein 8-like NW_004955467 9964828 9982343 - 102009590 AGCD01051537;AGCD01051538 MODEL 8937108 protein-coding LOC102019130 uncharacterized protein CXorf22-like NW_004955674 10208 53094 + 102019130 AGCD01077956;AGCD01077957;AGCD01077958;AGCD01077959;AGCD01077960;GBCE01169748;XM_005415069 XP_005415126 MODEL 8794146 protein-coding Pnck pregnancy up-regulated nonubiquitous CaM kinase ENCODES a protein that exhibits calcium/calmodulin-dependent protein kinase activity (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog) NW_004955580 401411 406663 - 102014842 AGCD01075603;AGCD01075604;GBBH01054212;XM_005414137;XM_005414138;XM_013509673;XM_013509675 XP_005414194;XP_005414195;XP_013365127;XP_013365129 MODEL 8737394 protein-coding Patl2 PAT1 homolog 2 INVOLVED IN negative regulation of cytoplasmic mRNA processing body assembly (ortholog); ASSOCIATED WITH AGAT deficiency (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); P-body (ortholog) NW_004955416 11169711 11180557 - 102017566 AGCD01017178;GBDK01026686;XM_013512470;XM_013512471;XM_013512472 XP_013367924;XP_013367925;XP_013367926 MODEL 8865643 protein-coding LOC102011918 extensin-like NW_004955559 469599 475119 + 102011918 AGCD01073586;AGCD01073587;GBDF01008163;XM_005412762;XM_005412763;XM_013508926;XR_001232336 XP_005412819;XP_005412820;XP_013364380 MODEL 405822144 snorna SNORD56 small nucleolar RNA, C/D box 56 8920897 protein-coding Sertad1 SERTA domain containing 1 INVOLVED IN negative regulation of cell growth (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Carpenter syndrome 2 (ortholog); Colonic Neoplasms (ortholog); congenital hypoplastic anemia (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); sarcoplasm (ortholog) NW_004955578 848920 852193 + 102012705 AGCD01075500;GBDF01188769;XM_005414046;XM_013509664 XP_005414103;XP_013365118 MODEL 8778891 protein-coding Slc26a6 solute carrier family 26 member 6 ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); chloride transmembrane transporter activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); INVOLVED IN angiotensin-activated signaling pathway (ortholog); bicarbonate transport (ortholog); cellular response to cAMP (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); hepatocellular carcinoma (ortholog); Hyperoxaluria (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog) NW_004955532 713725 723190 - 102029898 AGCD01070149;GBCB01025330;XM_005410162;XM_005410163;XM_005410164;XM_013507633;XM_013507634;XM_013507635;XM_013507636 XP_005410219;XP_005410220;XP_005410221;XP_013363087;XP_013363088;XP_013363089;XP_013363090 MODEL 8885347 ncrna LOC102005533 uncharacterized LOC102005533 NW_004955402 4830997 4925604 + 102005533 AGCD01000128;AGCD01000129;GBDF01177440;XR_001235012;XR_259028 MODEL 8972022 protein-coding Pigq phosphatidylinositol glycan anchor biosynthesis class Q ENCODES a protein that exhibits phosphatidylinositol N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog) NW_004955442 16620009 16635308 - 102025181 AGCD01037904;AGCD01037905;GBDK01238495;XM_005391636;XM_013517847;XM_013517848;XM_013517849 XP_005391693;XP_013373301;XP_013373302;XP_013373303 MODEL 8906053 protein-coding Rtl6 retrotransposon Gag like 6 ASSOCIATED WITH intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); substance-related disorder (ortholog) NW_004955413 29238719 29244112 - 102024106 AGCD01014578;AGCD01014579;GBDF01123354;GBDJ01085414;XM_005379464 XP_005379521 MODEL 8932772 pseudo LOC102012710 GTP:AMP phosphotransferase AK3, mitochondrial pseudogene NW_004955402 34583997 34587079 + 102012710 AGCD01000866 MODEL 8936399 ncrna LOC102017574 uncharacterized LOC102017574 NW_004955419 16993391 17030182 + 102017574 AGCD01020138;AGCD01020139;GBDF01119453;XR_001233601;XR_001233602;XR_001233603;XR_001233604;XR_001233605;XR_260638;XR_260639 MODEL 10138621 protein-coding LOC106147047 mediator of RNA polymerase II transcription subunit 27-like NW_004955513 1398627 1414156 - 106147047 AGCD01066856;GBDI01187846;XM_013506711 XP_013362165 MODEL 8798068 protein-coding Pde6g phosphodiesterase 6G ENCODES a protein that exhibits spectrin binding (ortholog); INVOLVED IN positive regulation of epidermal growth factor receptor signaling pathway (ortholog); positive regulation of G protein-coupled receptor signaling pathway (ortholog); positive regulation of MAPK cascade (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; visual phototransduction pathway; ASSOCIATED WITH fundus dystrophy (ortholog); retinitis pigmentosa (ortholog); retinitis pigmentosa 57 (ortholog) NW_004955506 1437645 1441758 + 102030217 AGCD01065263;GBBH01223939;XM_005407267 XP_005407324 MODEL 9058216 pseudo LOC102023352 N-alpha-acetyltransferase 50 pseudogene NW_004955416 682183 682584 - 102023352 AGCD01016819 MODEL 8845900 ncrna LOC102021639 uncharacterized LOC102021639 NW_004955411 34857471 34861212 + 102021639 AGCD01012416;GBDF01017865;XR_001232828;XR_259953 MODEL 8872121 ncrna LOC102011505 uncharacterized LOC102011505 NW_004955456 6097044 6102845 - 102011505 AGCD01046363;GBDF01134376;XR_262883 MODEL 9026608 pseudo LOC102024405 60S ribosomal protein L39 pseudogene NW_004955402 38749901 38750123 + 102024405 AGCD01000967;XM_005372945 MODEL 8725901 protein-coding Smco3 single-pass membrane protein with coiled-coil domains 3 ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog) NW_004955413 11551720 11560566 - 102029383 AGCD01013964;GBCQ01006581;XM_005379006;XM_005379007;XM_005379010;XM_013511646;XM_013511647;XM_013511648;XM_013511649 XP_005379063;XP_005379064;XP_005379067;XP_013367100;XP_013367101;XP_013367102;XP_013367103 MODEL 9062374 pseudo LOC102015665 60S ribosomal protein L31 pseudogene NW_004955543 1071306 1071676 - 102015665 AGCD01071612 MODEL 8763602 pseudo LOC102010338 uncharacterized protein C3orf38 homolog pseudogene NW_004955456 8222073 8223194 - 102010338 AGCD01046462 MODEL 9029676 protein-coding Pfkl phosphofructokinase, liver type ENCODES a protein that exhibits 6-phosphofructokinase activity (ortholog); ATP binding (ortholog); fructose binding (ortholog); INVOLVED IN fructose 1,6-bisphosphate metabolic process (ortholog); fructose 6-phosphate metabolic process (ortholog); glycolytic process (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; glycolysis pathway; ASSOCIATED WITH autistic disorder (ortholog); autoimmune polyendocrine syndrome type 1 (ortholog); cataract 9 multiple types (ortholog); FOUND IN 6-phosphofructokinase complex (ortholog); cytosol (ortholog) NW_004955407 41131022 41145392 - 102026944 AGCD01007856;AGCD01007857;AGCD01007858;GBBH01064619;GBDK01135116;XM_013505359 XP_013360813 MODEL 8992061 protein-coding Sobp sine oculis binding protein homolog ENCODES a protein that exhibits SUMO polymer binding (ortholog); INVOLVED IN cochlea development (ortholog); cognition (ortholog); inner ear morphogenesis (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); Impaired intellectual development, anterior maxillary protrusion, and strabismus (ortholog); FOUND IN nucleus (ortholog) NW_004955411 32745029 32898570 + 102023568 AGCD01012336;AGCD01012337;AGCD01012338;AGCD01012339;GBCB01000312;XM_013510791 XP_013366245 MODEL 8715506 protein-coding LOC102010697 olfactory receptor 2L3-like NW_004955418 30109107 30110042 + 102010697 AGCD01019503;XM_005382366 XP_005382423 MODEL 8734333 protein-coding Btg3 BTG anti-proliferation factor 3 INVOLVED IN negative regulation of mitotic cell cycle (ortholog); response to oxidative stress (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); cholestasis (ortholog); juvenile rheumatoid arthritis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955407 18927211 18939576 - 102012927 AGCD01007289;GBCE01095553;GBDF01047524;XM_013503870 XP_013359324 MODEL 39133455 snorna SNORD58 Small nucleolar RNA SNORD58 8860724 protein-coding LOC102008468 vomeronasal type-2 receptor 116-like NW_004955563 153803 168288 + 102008468 AGCD01074047;AGCD01074048;AGCD01074049;XM_005413196 XP_005413253 MODEL 8983783 protein-coding Enox1 ecto-NOX disulfide-thiol exchanger 1 ENCODES a protein that exhibits NADH dehydrogenase activity (ortholog); protein disulfide isomerase activity (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN plasma membrane (ortholog) NW_004955518 1124556 1677025 - 102006270 AGCD01067756;AGCD01067757;AGCD01067758;AGCD01067759;AGCD01067760;AGCD01067761;AGCD01067762;GBDF01088322;XM_005409058;XM_005409064;XM_005409068;XM_005409071;XM_013506963;XM_013506964;XM_013506965;XM_013506966;XM_013506967 XP_005409115;XP_005409121;XP_005409125;XP_005409128;XP_013362417;XP_013362418;XP_013362419;XP_013362420;XP_013362421 MODEL 8845975 protein-coding Wdr5 WD repeat domain 5 ENCODES a protein that exhibits histone H3K4 methyltransferase activity (ortholog); histone H3K4me1 reader activity (ortholog); histone H3Q5ser reader activity (ortholog); INVOLVED IN gluconeogenesis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); neuron projection development (ortholog); PARTICIPATES IN histone modification pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH congenital heart disease (ortholog); developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); FOUND IN ATAC complex (ortholog); histone acetyltransferase complex (ortholog); histone methyltransferase complex (ortholog) NW_004955513 3198655 3213754 + 102023728 AGCD01066899;GBDI01187396;XM_005408463;XM_013506677 XP_005408520;XP_013362131 MODEL 10253485 protein-coding LOC106149881 collagen alpha-1(I) chain-like NW_004955456 8190980 8193014 - 106149881 AGCD01046459;AGCD01046460;GBDI01163076;XM_013520545 XP_013375999 MODEL 8910656 protein-coding Ndc80 NDC80 kinetochore complex component ENCODES a protein that exhibits cyclin binding (ortholog); identical protein binding (ortholog); kinetochore adaptor activity (ortholog); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); attachment of spindle microtubules to kinetochore (ortholog); centrosome duplication (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); hepatocellular carcinoma (ortholog); intellectual disability (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955402 7692009 7728876 - 102019220 AGCD01000181;AGCD01000182;GBDK01305956;XM_005372664 XP_005372721 MODEL 8897015 protein-coding LOC102003733 E3 ubiquitin-protein ligase TRIM50 NW_004955456 14320894 14328341 + 102003733 AGCD01046639;GBDF01267146;XM_005396793;XM_005396795;XM_013520599 XP_005396850;XP_005396852;XP_013376053 MODEL 39132619 snorna SNORA70 Small nucleolar RNA SNORA70 8883353 protein-coding Slc52a2 solute carrier family 52 member 2 ENCODES a protein that exhibits 4-hydroxybutyrate receptor activity (ortholog); riboflavin transmembrane transporter activity (ortholog); INVOLVED IN flavin adenine dinucleotide biosynthetic process (ortholog); riboflavin metabolic process (ortholog); riboflavin transport (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 9 (ortholog); Brown-Vialetto-Van Laere syndrome (ortholog); Brown-Vialetto-Van Laere syndrome 1 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955454 2944169 2982203 + 102027266 AGCD01045040;AGCD01045041;AGCD01045042;AGCD01045043;AGCD01045044;GBDF01080372;XM_005395861;XM_005395862;XM_005395863 XP_005395918;XP_005395919;XP_005395920 MODEL 39133497 snrna U4 U4 spliceosomal RNA 8985858 protein-coding Psmd5 proteasome 26S subunit, non-ATPase 5 INVOLVED IN proteasome regulatory particle assembly (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome regulatory particle, base subcomplex (ortholog) NW_004955419 7199549 7221431 + 102025008 AGCD01019875;GBBH01025438;XM_005382593 XP_005382650 MODEL 8843955 protein-coding Tradd TNFRSF1A associated via death domain ENCODES a protein that exhibits death domain binding (ortholog); identical protein binding (ortholog); kinase binding (ortholog); INVOLVED IN canonical NF-kappaB signal transduction (ortholog); cellular response to tumor necrosis factor (ortholog); extrinsic apoptotic signaling pathway (ortholog); PARTICIPATES IN ceramide signaling pathway; Toll-like receptor signaling pathway; Trail mediated signaling pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); cataract 5 multiple types (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955484 9456268 9462425 + 102014361 AGCD01058415;GBDK01143327;XM_005403692;XM_013503962;XM_013503963 XP_005403749;XP_013359416;XP_013359417 MODEL 8825954 protein-coding Rab7b RAB7B, member RAS oncogene family INVOLVED IN cellular response to type II interferon (ortholog); late endosome to Golgi transport (ortholog); negative regulation of toll-like receptor 4 signaling pathway (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); autistic disorder (ortholog); osteoporosis (ortholog); FOUND IN Golgi apparatus (ortholog); late endosome (ortholog); lysosome (ortholog) NW_004955406 41615302 41638157 - 102015373 AGCD01006688;GBDK01084519;XM_005375379;XM_005375380 XP_005375436;XP_005375437 MODEL 9036390 protein-coding Pus10 pseudouridine synthase 10 ENCODES a protein that exhibits primary miRNA binding (ortholog); pseudouridine synthase activity (ortholog); tRNA pseudouridine synthase activity (ortholog); INVOLVED IN primary miRNA processing (ortholog); tRNA pseudouridine synthesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); peroxisome biogenesis disorder 11A (ortholog); Peroxisome biogenesis disorder 11B (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955424 22830889 22899420 + 102026128 AGCD01024990;AGCD01024991;AGCD01024992;AGCD01024993;GBDF01195069;XM_005385749;XM_005385750;XM_005385751;XM_005385752;XM_013514667 XP_005385806;XP_005385807;XP_005385808;XP_005385809;XP_013370121 MODEL 8924879 protein-coding Tsga10 testis specific 10 ENCODES a protein that exhibits structural molecule activity (ortholog); INVOLVED IN cell projection assembly (ortholog); ASSOCIATED WITH spermatogenic failure 26 (ortholog); FOUND IN cytoplasm (ortholog); motile cilium (ortholog); neuron projection (ortholog) NW_004955470 5376749 5471904 - 102008086 AGCD01052749;AGCD01052750;AGCD01052751;GBDI01255512;XM_005400731;XM_005400734;XM_013522795;XM_013522796;XM_013522797;XM_013522799;XM_013522800 XP_005400788;XP_005400791;XP_013378249;XP_013378250;XP_013378251;XP_013378253;XP_013378254 MODEL 8985510 protein-coding Wdr53 WD repeat domain 53 ASSOCIATED WITH autistic disorder (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); schizophrenia (ortholog) NW_004955420 12694208 12714613 - 102013299 AGCD01020884;AGCD01020885;GBDI01358032;XM_005383136;XM_005383137;XM_005383138;XM_013513504 XP_005383193;XP_005383194;XP_005383195;XP_013368958 MODEL 10071268 ncrna LOC106147048 uncharacterized LOC106147048 NW_004955408 30736895 30742706 + 106147048 AGCD01008815;XR_001231754 MODEL 8761287 protein-coding Slc52a3 solute carrier family 52 member 3 ENCODES a protein that exhibits riboflavin transmembrane transporter activity (ortholog); INVOLVED IN cellular response to heat (ortholog); flavin adenine dinucleotide biosynthetic process (ortholog); riboflavin metabolic process (ortholog); ASSOCIATED WITH Auditory Neuropathy (ortholog); Brown-Vialetto-Van Laere syndrome (ortholog); Brown-Vialetto-Van Laere syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955596 48463 60239 - 102008045 AGCD01076504;GBCE01171650;GBCQ01179604;XM_005414682 XP_005414739 MODEL 8842683 protein-coding Trmt2a tRNA methyltransferase 2 homolog A ENCODES a protein that exhibits C-methyltransferase activity (ortholog); tRNA (uracil(54)-C5)-methyltransferase activity, S-adenosyl methionine-dependent (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog) NW_004955442 17993130 17997944 + 102023302 AGCD01037991;GBDF01088981;XM_005391731;XM_005391733 XP_005391788;XP_005391790 MODEL 41410890 protein-coding REG4 regenerating family member 4 8904613 pseudo LOC102011508 small glutamine-rich tetratricopeptide repeat-containing protein beta pseudogene NW_004955458 14795983 14797440 + 102011508 AGCD01047847 MODEL 8707882 protein-coding LOC102011087 olfactory receptor 9K2-like NW_004955458 2223510 2224451 + 102011087 AGCD01047218;XM_005397237 XP_005397294 MODEL 8893552 pseudo LOC102006579 histone H2A type 1-H-like NW_004955483 1224848 1228126 + 102006579 AGCD01057644 MODEL 8787773 ncrna LOC102010339 uncharacterized LOC102010339 NW_004955408 5326384 5328418 + 102010339 AGCD01008132;GBDF01177225;XR_259661 MODEL 8758766 protein-coding LOC102005537 protein S100-A15A NW_004955592 62455 67295 + 102005537 AGCD01076300;XM_005414601 XP_005414658 MODEL 8772275 ncrna LOC102012713 uncharacterized LOC102012713 NW_004955599 522218 526724 - 102012713 AGCD01076655;GBDI01339273;XR_001232551;XR_001232552;XR_265154 MODEL 8800480 protein-coding Rtl9 retrotransposon Gag like 9 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955490 5409277 5420508 - 102008324 AGCD01060204;GBDF01110928;XM_005404656 XP_005404713 MODEL 8744107 protein-coding Rasl12 RAS like family 12 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); diarrhea (ortholog) NW_004955450 10352574 10363906 + 102009901 AGCD01042614;GBCB01061740;GBCE01108831;XM_005393733 XP_005393790 MODEL 9031928 protein-coding P2rx6 purinergic receptor P2X 6 ENCODES a protein that exhibits extracellularly ATP-gated monoatomic cation channel activity (ortholog); protein-containing complex binding (ortholog); ASSOCIATED WITH autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); chromosome 22q11.2 microduplication syndrome (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); dendritic spine (ortholog) NW_004955442 19263544 19272231 - 102021180 AGCD01038045;GBDF01013503;XM_005391819;XM_013518015 XP_005391876;XP_013373469 MODEL 8795534 pseudo LOC102010711 probable ATP-dependent RNA helicase DDX41 pseudogene NW_004955502 1434 3248 + 102010711 AGCD01064229 MODEL 9008644 ncrna LOC102006962 uncharacterized LOC102006962 NW_004955442 18374768 18409901 + 102006962 AGCD01038005;AGCD01038006;GBCE01069332;XR_262164 MODEL 9065593 pseudo LOC102006580 olfactory receptor 13C4-like NW_004955419 21896616 21897652 + 102006580 AGCD01020289 MODEL 8768577 protein-coding LOC102018712 olfactory receptor 51F2 ASSOCIATED WITH delta beta-thalassemia (ortholog) NW_004955414 20398735 20399715 + 102018712 AGCD01015371;XM_005380056 XP_005380113 MODEL 9053557 protein-coding Riiad1 regulatory subunit of type II PKA R-subunit domain containing 1 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog) NW_004955589 686722 695805 - 102016332 AGCD01076180;AGCD01076181;GBDK01281968;XM_005414556;XM_005414557 XP_005414613;XP_005414614 MODEL 9063392 ncrna LOC102023354 uncharacterized LOC102023354 NW_004955416 23969095 23980352 - 102023354 AGCD01017556;AGCD01017557;GBCQ01094488;XR_260414 MODEL 8828733 protein-coding LOC102009596 natural cytotoxicity triggering receptor 3 ligand 1-like NW_004955414 32190761 32204203 + 102009596 AGCD01015777;GBBH01134981;XM_005380382;XM_005380383;XM_013512027 XP_005380439;XP_005380440;XP_013367481 MODEL 9047727 protein-coding Tiparp TCDD inducible poly(ADP-ribose) polymerase ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN androgen metabolic process (ortholog); estrogen metabolic process (ortholog); face morphogenesis (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN nucleus (ortholog) NW_004955448 7687668 7716481 + 102019653 AGCD01041422;GBDF01125248;XM_005393080 XP_005393137 MODEL 8774400 protein-coding Limk2 LIM domain kinase 2 ENCODES a protein that exhibits protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN astral microtubule organization (ortholog); cornea development in camera-type eye (ortholog); establishment of vesicle localization (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN centrosome (ortholog); cis-Golgi network (ortholog); cytoplasm (ortholog) NW_004955455 5406085 5473418 + 102005894 AGCD01045726;AGCD01045727;GBCE01030826;XM_005396301;XM_005396302;XM_005396304;XM_005396305;XM_013520329 XP_005396358;XP_005396359;XP_005396361;XP_005396362;XP_013375783 MODEL 8868655 ncrna LOC102008072 uncharacterized LOC102008072 NW_004955410 28976836 28996818 + 102008072 AGCD01011267;AGCD01011268;GBDF01307217;XR_259880 MODEL 9033445 protein-coding Smco4 single-pass membrane protein with coiled-coil domains 4 ASSOCIATED WITH intellectual disability (ortholog) NW_004955414 976105 1029825 + 102024890 AGCD01014756;GBBH01006678;GBCE01024628;XM_013512087 XP_013367541 MODEL 8716845 protein-coding LOC102015667 olfactory receptor 4N2 NW_004955550 562632 566690 - 102015667 AGCD01072510;XM_005412033 XP_005412090 MODEL 8827554 protein-coding Pnisr PNN interacting serine and arginine rich protein FOUND IN cytosol (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955411 25270569 25297571 - 102023787 AGCD01012151;GBCB01022118;XM_005377803;XM_005377804;XM_005377805;XM_013510778;XM_013510779;XM_013510780;XM_013510781;XM_013510782 XP_005377860;XP_005377861;XP_005377862;XP_013366232;XP_013366233;XP_013366234;XP_013366235;XP_013366236 MODEL 39133453 snorna SNORD58 Small nucleolar RNA SNORD58 8940879 ncrna LOC102017575 uncharacterized LOC102017575 NW_004955484 4718134 4736293 - 102017575 AGCD01058230;AGCD01058231;GBDF01021447;XR_263886 MODEL 8967512 protein-coding Btg4 BTG anti-proliferation factor 4 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); INVOLVED IN maternal-to-zygotic transition of gene expression (ortholog); negative regulation of mitotic cell cycle (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); Carney-Stratakis syndrome (ortholog) NW_004955412 13137273 13250261 - 102013397 AGCD01012829;GBBH01185406;XM_005378059;XM_013511008;XM_013511009;XM_013511010;XM_013511011;XM_013511012;XM_013511014;XM_013511015;XM_013511016 XP_005378116;XP_013366462;XP_013366463;XP_013366464;XP_013366465;XP_013366466;XP_013366468;XP_013366469;XP_013366470 MODEL 8845450 protein-coding Tipin TIMELESS interacting protein INVOLVED IN cell cycle phase transition (ortholog); DNA damage checkpoint signaling (ortholog); DNA replication checkpoint signaling (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955450 9259838 9279479 + 102029924 AGCD01042589;GBDF01222347;XM_005415299;XM_013518980 XP_005415356;XP_013374434 MODEL 8876262 pseudo LOC102005539 integrin beta-1-like NW_004955602 28357 31946 + 102005539 AGCD01076761 MODEL 39133498 snrna U4 U4 spliceosomal RNA 8829011 protein-coding Psmd6 proteasome 26S subunit, non-ATPase 6 ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog) NW_004955517 1874874 1886480 + 102017692 AGCD01067609;AGCD01067610;GBDF01002254;XM_005409021 XP_005409078 MODEL 8856090 protein-coding Plat plasminogen activator, tissue type ENCODES a protein that exhibits phosphoprotein binding (ortholog); serine-type endopeptidase activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); cellular response to luteinizing hormone stimulus (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH acute kidney failure (ortholog); acute promyelocytic leukemia (ortholog); Acute Traumatic Coagulopathy (ortholog); FOUND IN apical part of cell (ortholog); cell surface (ortholog); collagen-containing extracellular matrix (ortholog) NW_004955536 730962 754333 + 102009758 AGCD01070737;GBCQ01003427;XM_005410511 XP_005410568 MODEL 8717278 pseudo LOC102011922 protein kinase C iota type pseudogene NW_004955446 1525926 1528371 + 102011922 AGCD01039967;XM_005392599 MODEL 8748761 protein-coding Patz1 POZ/BTB and AT hook containing zinc finger 1 ENCODES a protein that exhibits chromatin binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN male gonad development (ortholog); negative regulation of endothelial cell migration (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH high grade glioma (ortholog); FOUND IN male germ cell nucleus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955455 5544841 5566630 - 102007625 AGCD01045738;AGCD01045739;GBBH01118873;GBDJ01176831;XM_005396307;XM_005396308;XM_005396309 XP_005396364;XP_005396365;XP_005396366 MODEL 8892522 protein-coding Rab8a RAB8A, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN axonogenesis (ortholog); cellular response to insulin stimulus (ortholog); cilium assembly (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH rheumatoid arthritis (ortholog); FOUND IN actin cytoskeleton (ortholog); centriolar satellite (ortholog); centrosome (ortholog) NW_004955524 1403811 1416005 - 102023187 AGCD01068749;GBBH01023807;XM_005409485 XP_005409542 MODEL 8942875 protein-coding Wdr54 WD repeat domain 54 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); negative regulation of receptor internalization (ortholog); regulation of epidermal growth factor receptor signaling pathway (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); Methylmalonyl-CoA Epimerase Deficiency (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog); vesicle (ortholog) NW_004955424 11358694 11362138 - 102003257 AGCD01024564;GBDK01237577;XM_005385517;XM_005385518;XM_005385519 XP_005385574;XP_005385575;XP_005385576 MODEL 9037593 protein-coding Pou4f2 POU class 4 homeobox 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN axon extension (ortholog); axon guidance (ortholog); axonogenesis (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH methylmalonic acidemia cblA type (ortholog); FOUND IN cytoplasm (ortholog); euchromatin (ortholog); nuclear speck (ortholog) NW_004955428 2325775 2329122 + 102010927 AGCD01027632;XM_005386664 XP_005386721 MODEL 8889844 protein-coding Slc26a7 solute carrier family 26 member 7 ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); chloride channel activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); chloride transport (ortholog); gastric acid secretion (ortholog); ASSOCIATED WITH congenital hypothyroidism (ortholog); genetic disease (ortholog); Hyperoxaluria (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cytoplasm (ortholog) NW_004955417 7977292 8127241 + 102014355 AGCD01018019;AGCD01018020;AGCD01018021;GBDF01075118;XM_005381771;XM_005381772;XM_005381773;XM_013512844 XP_005381828;XP_005381829;XP_005381830;XP_013368298 MODEL 8820231 protein-coding Slc5a1 solute carrier family 5 member 1 ENCODES a protein that exhibits alpha-glucoside transmembrane transporter activity (ortholog); D-glucose transmembrane transporter activity (ortholog); D-glucose:sodium symporter activity (ortholog); INVOLVED IN alpha-glucoside transport (ortholog); carbohydrate utilization (ortholog); chloride transmembrane transport (ortholog); PARTICIPATES IN lactose degradation pathway; sodium-glucose cotransporter mediated glucose transport pathway; trehalose degradation pathway; ASSOCIATED WITH genetic disease (ortholog); glucose-galactose malabsorption (ortholog); Malabsorption Syndromes (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog) NW_004955455 6158773 6236950 + 102006541 AGCD01045776;AGCD01045777;AGCD01045778;AGCD01045779;AGCD01045780;AGCD01045781;AGCD01045782;GBDF01276541;XM_013520495 XP_013375949 MODEL 8885269 protein-coding Socs1 suppressor of cytokine signaling 1 ENCODES a protein that exhibits insulin-like growth factor receptor binding (ortholog); kinase inhibitor activity (ortholog); protein kinase binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); cell surface receptor signaling pathway via JAK-STAT (ortholog); cellular response to amino acid stimulus (ortholog); PARTICIPATES IN insulin signaling pathway; interleukin-12 signaling pathway; interleukin-2 signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); alcoholic hepatitis (ortholog); allergic contact dermatitis (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955442 7321337 7323109 + 102030005 AGCD01037623;GBCE01077934;XM_005391166 XP_005391223 MODEL 8861526 ncrna LOC102011516 uncharacterized LOC102011516 NW_004955411 10562211 10565308 + 102011516 AGCD01011781;GBDF01307096;XR_259930 MODEL 8886233 protein-coding Enox2 ecto-NOX disulfide-thiol exchanger 2 INVOLVED IN electron transport chain (ortholog); ultradian rhythm (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); disease of cellular proliferation (ortholog); FOUND IN external side of plasma membrane (ortholog) NW_004955473 4123403 4455268 + 102004379 AGCD01053946;AGCD01053947;AGCD01053948;AGCD01053949;AGCD01053950;AGCD01053951;GBCE01168964;XM_005401229;XM_005401230;XM_005401231;XM_013523085 XP_005401286;XP_005401287;XP_005401288;XP_013378539 MODEL 8787342 protein-coding Wdr55 WD repeat domain 55 INVOLVED IN rRNA processing (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955418 33237 37676 - 102025242 AGCD01018664;GBCQ01151900;XM_005382003 XP_005382060 MODEL 9053332 protein-coding Pde6h phosphodiesterase 6H INVOLVED IN positive regulation of epidermal growth factor receptor signaling pathway (ortholog); positive regulation of G protein-coupled receptor signaling pathway (ortholog); positive regulation of MAPK cascade (ortholog); PARTICIPATES IN visual phototransduction pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); color blindness (ortholog); cone-rod dystrophy 14 (ortholog) NW_004955413 11654252 11711799 + 102004369 AGCD01013966;GBDJ01103597;XM_005379015;XM_013511586;XM_013511587;XM_013511588 XP_005379072;XP_013367040;XP_013367041;XP_013367042 MODEL 9067218 protein-coding LOC102024406 histone H3-like centromeric protein CSE4 NW_004955589 479165 495697 - 102024406 AGCD01076173;XM_005414584 XP_005414641 MODEL 9007944 ncrna LOC102017577 uncharacterized LOC102017577 NW_004955421 601934 608748 - 102017577 AGCD01021568;GBDF01217090;XR_001233853 MODEL 8924130 protein-coding Tiprl TOR signaling pathway regulator ENCODES a protein that exhibits protein phosphatase inhibitor activity (ortholog); INVOLVED IN DNA damage checkpoint signaling (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 25 (ortholog); parathyroid carcinoma (ortholog) NW_004955462 8921678 8939785 - 102018696 AGCD01049331;GBDF01003611;XM_005398209;XM_005398210;XM_005398213 XP_005398266;XP_005398267;XP_005398270 MODEL 39133499 snrna U4 U4 spliceosomal RNA 8971214 protein-coding Pigr polymeric immunoglobulin receptor ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); polymeric immunoglobulin binding (ortholog); polymeric immunoglobulin receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); epidermal growth factor receptor signaling pathway (ortholog); Fc receptor signaling pathway (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 7 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN extracellular space (ortholog); plasma membrane (ortholog); receptor complex (ortholog) NW_004955406 42456450 42474489 - 102023664 AGCD01006708;GBCQ01039929;XM_005375408 XP_005375465 MODEL 8930397 protein-coding Pus3 pseudouridine synthase 3 ENCODES a protein that exhibits pseudouridine synthase activity (ortholog); tRNA pseudouridine(38/39) synthase activity (ortholog); INVOLVED IN tRNA pseudouridine synthesis (ortholog); ASSOCIATED WITH anencephaly (ortholog); chromosome 11 partial duplication syndrome (ortholog); congenital heart disease (ortholog) NW_004955412 26941837 26951524 - 102026732 AGCD01013224;GBDF01146206;XM_005378481;XM_005378482 XP_005378538;XP_005378539 MODEL 10176081 protein-coding LOC106147049 translation initiation factor IF-2-like NW_004955513 1951902 1953671 + 106147049 AGCD01066865;GBBH01177166;GBCE01027938;XM_013506718 XP_013362172 MODEL 8873090 protein-coding Psmd7 proteasome 26S subunit, non-ATPase 7 ENCODES a protein that exhibits protein homodimerization activity (ortholog); FOUND IN proteasome complex (ortholog); proteasome regulatory particle (ortholog) NW_004955484 6824467 6832251 + 102021244 AGCD01058294;GBDF01003955;XM_005403534 XP_005403591 MODEL 8852951 protein-coding Rilp Rab interacting lysosomal protein ENCODES a protein that exhibits dynein light intermediate chain binding (ortholog); small GTPase binding (ortholog); INVOLVED IN early endosome to late endosome transport (ortholog); endosome to lysosome transport (ortholog); endosome transport via multivesicular body sorting pathway (ortholog); FOUND IN late endosome (ortholog); lysosome (ortholog); protein-containing complex (ortholog) NW_004955481 1531175 1534794 + 102018598 AGCD01056834;AGCD01056835;GBDF01180428;XM_005402615;XM_005402616;XM_013503411;XM_013503412 XP_005402672;XP_005402673;XP_013358865;XP_013358866 MODEL 8834109 protein-coding Pfkm phosphofructokinase, muscle ENCODES a protein that exhibits 6-phosphofructokinase activity (ortholog); AMP binding (ortholog); ATP binding (ortholog); INVOLVED IN canonical glycolysis (ortholog); fructose 1,6-bisphosphate metabolic process (ortholog); fructose 6-phosphate metabolic process (ortholog); PARTICIPATES IN Fanconi syndrome pathway; glycogen storage disease type VII pathway; glycolysis pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); glycogen storage disease (ortholog); FOUND IN 6-phosphofructokinase complex (ortholog); apical plasma membrane (ortholog); cytosol (ortholog) NW_004955500 6979169 7020375 + 102024135 AGCD01063896;AGCD01063897;GBCE01095084;XM_005406631;XM_005406633;XM_005406634 XP_005406688;XP_005406690;XP_005406691 MODEL 8969322 protein-coding Lims1 LIM zinc finger domain containing 1 ENCODES a protein that exhibits protein kinase binding (ortholog); protein-containing complex binding (ortholog); zinc ion binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); cell-cell junction organization (ortholog); cell-matrix adhesion (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 7 (ortholog); ectodermal dysplasia 10A (ortholog); ectodermal dysplasia 10B (ortholog); FOUND IN cell-cell junction (ortholog); focal adhesion (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955470 12142997 12158273 + 102008399 AGCD01052919;GBBH01209486;GBCQ01093053;XM_013522811 XP_013378265 MODEL 8994964 ncrna LOC102010340 uncharacterized LOC102010340 NW_004955457 12942492 12966671 + 102010340 AGCD01047033;GBBH01124502;XR_262946 MODEL 8823034 protein-coding Rab8b RAB8B, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); signaling receptor binding (ortholog); TPR domain binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); cell-substrate junction organization (ortholog); cilium assembly (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cell tip (ortholog); endosome membrane (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955450 12026784 12095332 - 102028150 AGCD01042686;AGCD01042687;GBDJ01140085;XM_005393793 XP_005393850 MODEL 10167184 ncrna LOC106149882 uncharacterized LOC106149882 NW_004955456 8216315 8218542 - 106149882 AGCD01046462;GBDF01146827;XR_001236340 MODEL 9028304 protein-coding Psmd8 proteasome 26S subunit, non-ATPase 8 ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog) NW_004955468 1044940 1052130 - 102016041 AGCD01051749;GBBH01033976;XM_013522469 XP_013377923 MODEL 8896712 pseudo LOC102021640 L-lactate dehydrogenase B chain pseudogene NW_004955464 13204250 13218462 + 102021640 AGCD01050262;AGCD01050263;AGCD01050264 MODEL 8740923 protein-coding Rtn1 reticulon 1 INVOLVED IN negative regulation of amyloid-beta formation (ortholog); neuron differentiation (ortholog); ASSOCIATED WITH Myocardial Ischemia (ortholog); FOUND IN dendrite (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955466 13290419 13454387 - 102009815 AGCD01051156;AGCD01051157;AGCD01051158;AGCD01051159;AGCD01051160;GBBH01063056;XM_013522002 XP_013377456 MODEL 8912261 protein-coding Tsga10ip testis specific 10 interacting protein ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog) NW_004955422 19372072 19389144 - 102022710 AGCD01023002;AGCD01023003;AGCD01023004;AGCD01023005;GBDF01008093;XM_005384439 XP_005384496 MODEL 8987314 protein-coding Enpep glutamyl aminopeptidase ENCODES a protein that exhibits aminopeptidase activity (ortholog); metalloaminopeptidase activity (ortholog); metallopeptidase activity (ortholog); INVOLVED IN angiogenesis (ortholog); angiotensin maturation (ortholog); cell migration (ortholog); PARTICIPATES IN angiotensin III signaling pathway; renin-angiotensin cascade pathway; ASSOCIATED WITH autistic disorder (ortholog); Diabetic Nephropathies (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); brush border (ortholog) NW_004955457 15863881 15943074 - 102023230 AGCD01047099;AGCD01047100;GBCQ01011653;XM_005397109 XP_005397166 MODEL 8848716 protein-coding LOC102006582 serine protease 44-like NW_004955420 25378681 25382275 + 102006582 AGCD01021355;GBDF01077365;XM_013513624 XP_013369078 MODEL 8720163 protein-coding Traf1 TNF receptor associated factor 1 ENCODES a protein that exhibits identical protein binding (ortholog); thioesterase binding (ortholog); tumor necrosis factor receptor binding (ortholog); INVOLVED IN positive regulation of NF-kappaB transcription factor activity (ortholog); regulation of extrinsic apoptotic signaling pathway (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH multiple sclerosis (ortholog); patent ductus arteriosus (ortholog); Prostatic Neoplasms (ortholog) NW_004955419 7117869 7145274 + 102021974 AGCD01019874;GBDK01090336;XM_013513240;XM_013513241;XM_013513242;XR_001233625;XR_001233626 XP_013368694;XP_013368695;XP_013368696 MODEL 8976857 pseudo LOC102009597 mitochondrial fission factor-like NW_004955414 11395994 11396843 - 102009597 AGCD01015082 MODEL 8862704 pseudo LOC102024411 olfactory receptor 1571-like NW_004955626 143148 144021 + 102024411 AGCD01077469 MODEL 8890897 ncrna LOC102023356 uncharacterized LOC102023356 NW_004955417 28323417 28329404 + 102023356 AGCD01018579;GBDJ01104529;XR_001233405;XR_260508 MODEL 8758438 protein-coding Pde7a phosphodiesterase 7A ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); cyclic-nucleotide phosphodiesterase activity (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway NW_004955444 13349405 13475827 + 102019859 AGCD01039100;AGCD01039101;GBCE01012964;GBCE01012970;XM_005392162;XR_262266;XR_262267 XP_005392219 MODEL 8760598 pseudo LOC102015672 zinc transporter 9 pseudogene NW_004955446 17828072 17829356 + 102015672 AGCD01040386 MODEL 8740819 pseudo LOC102003734 RWD domain-containing protein 1 pseudogene NW_004955457 11994927 11995651 + 102003734 AGCD01046997 MODEL 8709801 protein-coding LOC102008469 protein FAM209B NW_004955445 2725178 2727984 - 102008469 AGCD01039364;GBDJ01263846;XM_005392264 XP_005392321 MODEL 39133452 snorna SNORD58 Small nucleolar RNA SNORD58 8916131 pseudo LOC102012714 heterogeneous nuclear ribonucleoprotein A3-like NW_004955402 57336253 57364330 - 102012714 AGCD01001495 MODEL 8762462 protein-coding Nde1 nudE neurodevelopment protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); microtubule binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN centrosome duplication (ortholog); cerebral cortex development (ortholog); establishment of chromosome localization (ortholog); ASSOCIATED WITH aortic aneurysm (ortholog); aortic disease (ortholog); autistic disorder (ortholog); FOUND IN centrosome (ortholog); kinetochore (ortholog); microtubule organizing center (ortholog) NW_004955442 495704 530296 + 102025728 AGCD01037426;GBBH01077769;XM_005391075;XM_005391076;XM_005391077;XM_005391078;XM_013517843;XM_013517844 XP_005391132;XP_005391133;XP_005391134;XP_005391135;XP_013373297;XP_013373298 MODEL 8911117 protein-coding Slc5a10 solute carrier family 5 member 10 ENCODES a protein that exhibits fructose:sodium symporter activity (ortholog); mannose:sodium symporter activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 2 (ortholog); Joubert syndrome 1 (ortholog) NW_004955467 581120 654441 - 102005579 AGCD01051226;AGCD01051227;AGCD01051228;AGCD01051229;AGCD01051230;GBCQ01011485;XM_005399280;XM_005399282;XM_005399284;XM_005399285 XP_005399337;XP_005399339;XP_005399341;XP_005399342 MODEL 8999705 ncrna LOC102019134 uncharacterized LOC102019134 NW_004955405 28220948 28224636 + 102019134 AGCD01005233;GBDF01177491;XR_259406 MODEL 8807181 protein-coding Rassf1 Ras association domain family member 1 ENCODES a protein that exhibits identical protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN DNA damage response (ortholog); positive regulation of protein ubiquitination (ortholog); protein stabilization (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); bladder disease (ortholog); FOUND IN microtubule cytoskeleton (ortholog); nucleus (ortholog) NW_004955532 2132892 2142106 - 102004113 AGCD01070219;AGCD01070220;GBDF01153768;GBDK01000157;XM_005410266;XM_005410267 XP_005410323;XP_005410324 MODEL 8886449 protein-coding LOC102011519 zinc finger protein with KRAB and SCAN domains 3 NW_004955465 13688307 13696499 + 102011519 AGCD01050618;GBCB01076570;XM_005398966 XP_005399023 MODEL 8718917 protein-coding Lims2 LIM zinc finger domain containing 2 INVOLVED IN cell-cell adhesion (ortholog); cell-cell junction organization (ortholog); cholangiocyte proliferation (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH autosomal dominant thrombophilia due to protein C deficiency (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2W (ortholog); centronuclear myopathy 2 (ortholog); FOUND IN focal adhesion (ortholog) NW_004955459 2874282 2913956 + 102027722 AGCD01048004;GBCB01111199;XM_005397601;XM_005397602;XM_005397604;XM_013521048 XP_005397658;XP_005397659;XP_005397661;XP_013376502 MODEL 8993613 protein-coding LOC102018714 serine/threonine-protein kinase 33-like NW_004955414 24256281 24303682 - 102018714 AGCD01015539;AGCD01015540;AGCD01015541;GBDI01261988;XM_013511741 XP_013367195 MODEL 8961756 protein-coding Sertad2 SERTA domain containing 2 ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN negative regulation of cell growth (ortholog); positive regulation of DNA-templated transcription (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955424 19683745 19797889 + 102007134 AGCD01024833;AGCD01024834;AGCD01024835;AGCD01024836;AGCD01024837;GBDK01430460;XM_005385696;XM_005385698 XP_005385753;XP_005385755 MODEL 8860742 protein-coding LOC102010344 tubulin alpha-3 chain NW_004955461 6060418 6069340 - 102010344 AGCD01048891;GBDK01010972;XM_005398006 XP_005398063 MODEL 8786768 protein-coding Btk Bruton tyrosine kinase ENCODES a protein that exhibits identical protein binding (ortholog); non-membrane spanning protein tyrosine kinase activity (ortholog); phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); INVOLVED IN B cell affinity maturation (ortholog); B cell receptor signaling pathway (ortholog); cell maturation (ortholog); PARTICIPATES IN erythropoietin signaling pathway; FasL mediated signaling pathway; Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH Adenoviridae Infections (ortholog); agammaglobulinemia (ortholog); agammaglobulinemia 1 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955503 7483819 7515085 - 102026026 AGCD01064794;GBBH01034514;XM_005406951;XM_005406952 XP_005407008;XP_005407009 MODEL 8940300 protein-coding Srrd SRR1 domain containing INVOLVED IN regulation of circadian rhythm (ortholog); regulation of heme biosynthetic process (ortholog); ASSOCIATED WITH cataract 23 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955455 1076113 1090346 + 102015806 AGCD01045568;GBDF01188676;XM_005396149;XM_005396150;XM_005396151;XM_005396152 XP_005396206;XP_005396207;XP_005396208;XP_005396209 MODEL 39133500 snrna U4 U4 spliceosomal RNA 8962845 protein-coding Smcr8 SMCR8-C9orf72 complex subunit ENCODES a protein that exhibits GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); protein kinase binding (ortholog); INVOLVED IN negative regulation of autophagosome assembly (ortholog); negative regulation of gene expression (ortholog); negative regulation of macroautophagy (ortholog); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 2 (ortholog); Joubert syndrome 1 (ortholog); FOUND IN Atg1/ULK1 kinase complex (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955478 11002174 11015123 - 102020663 AGCD01056157;GBDF01222841;XM_005402280 XP_005402337 MODEL 8759388 protein-coding Rel REL proto-oncogene, NF-kB subunit ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of gene expression (ortholog); negative regulation of interferon-beta production (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN nuclear factor kappa B signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); atrophic gastritis (ortholog); breast cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955424 22909035 22939651 - 102027422 AGCD01024993;AGCD01024994;GBBH01182330;XM_005385753;XM_013514714 XP_005385810;XP_013370168 MODEL 8822595 protein-coding LOC102011088 olfactory receptor 1361-like NW_004955408 1647226 1658966 + 102011088 AGCD01007970;XM_005376563 XP_005376620 MODEL 8774795 protein-coding Pawr pro-apoptotic WT1 regulator ENCODES a protein that exhibits actin binding (ortholog); enzyme binding (ortholog); leucine zipper domain binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); apoptotic process (ortholog); apoptotic signaling pathway (ortholog); PARTICIPATES IN ceramide signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); adenocarcinoma (ortholog); Alzheimer's disease (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog); axon (ortholog) NW_004955405 18434711 18540710 - 102023771 AGCD01005017;AGCD01005018;AGCD01005019;AGCD01005020;GBCC01021183;GBCE01134585;XM_013517857 XP_013373311 MODEL 8913595 pseudo LOC102018717 cullin-2 pseudogene NW_004955472 6363888 6365161 - 102018717 AGCD01053598 MODEL 9023252 protein-coding Pigs phosphatidylinositol glycan anchor biosynthesis class S INVOLVED IN attachment of GPI anchor to protein (ortholog); GPI anchored protein biosynthesis (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 95 (ortholog); genetic disease (ortholog); FOUND IN GPI-anchor transamidase complex (ortholog) NW_004955481 4583119 4597091 + 102003133 AGCD01056944;GBDF01124484;XM_005402749 XP_005402806 MODEL 10327998 ncrna LOC106147050 uncharacterized LOC106147050 NW_004955513 408434 416094 - 106147050 AGCD01066824;GBDF01181175;XR_001231756;XR_001231757 MODEL 8716819 protein-coding Prpf3 pre-mRNA processing factor 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal tri-snRNP complex assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH fundus dystrophy (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN Cajal body (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955413 429259 455449 - 102015301 AGCD01013465;AGCD01013466;AGCD01013467;AGCD01013468;GBDK01133619;XM_005378686;XM_005378687;XR_001232982 XP_005378743;XP_005378744 MODEL 8701905 ncrna LOC102024423 uncharacterized LOC102024423 NW_004955453 14383498 14394719 - 102024423 AGCD01044864;GBDF01252476;XR_001236145;XR_001236146;XR_262734;XR_262735 MODEL 9064475 protein-coding Slc26a8 solute carrier family 26 member 8 ENCODES a protein that exhibits chloride channel activity (ortholog); oxalate transmembrane transporter activity (ortholog); sulfate transmembrane transporter activity (ortholog); INVOLVED IN chloride transport (ortholog); oxalate transport (ortholog); sulfate transmembrane transport (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); schizophrenia (ortholog); spermatogenic failure 3 (ortholog); FOUND IN plasma membrane (ortholog); sperm annulus (ortholog) NW_004955437 3741284 3811819 - 102013542 AGCD01034334;AGCD01034335;AGCD01034336;AGCD01034337;AGCD01034338;AGCD01034339;AGCD01034340;AGCD01034341;AGCD01034342;AGCD01034343;AGCD01034344;AGCD01034345;AGCD01034346;AGCD01034347;AGCD01034348;AGCD01034349;AGCD01034350;GBDF01003340;GBDK01200079;XM_013516889 XP_013372343 MODEL 8885815 protein-coding Rilpl1 Rab interacting lysosomal protein like 1 INVOLVED IN epithelial cell morphogenesis (ortholog); nitric oxide mediated signal transduction (ortholog); protein transport from ciliary membrane to plasma membrane (ortholog); ASSOCIATED WITH oculopharyngodistal myopathy 4 (ortholog); short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955482 5424898 5455145 + 102016918 AGCD01057330;GBCB01004251;GBCQ01095809;XM_005403032;XM_005403033;XM_005403034;XM_005403035;XM_005403036 XP_005403089;XP_005403090;XP_005403091;XP_005403092;XP_005403093 MODEL 9028988 protein-coding P2rx7 purinergic receptor P2X 7 ENCODES a protein that exhibits ATP binding (ortholog); channel activity (ortholog); copper ion binding (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); ATP export (ortholog); bleb assembly (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); hypophosphatasia (ortholog); FOUND IN bleb (ortholog); cell-cell junction (ortholog); cytoplasm (ortholog) NW_004955482 7048674 7087525 - 102019393 AGCD01057436;AGCD01057437;GBDK01231630;XM_005403137;XM_005403138 XP_005403194;XP_005403195 MODEL 8874398 protein-coding LOC102006963 sialic acid-binding Ig-like lectin 14 NW_004955558 1289644 1293742 - 102006963 AGCD01073431;GBDK01013795;XM_005412746 XP_005412803 MODEL 8905595 protein-coding LOC102005543 PRAME family member 20-like NW_004955615 219115 226336 + 102005543 AGCD01077251;XM_013510139 XP_013365593 MODEL 10370171 ncrna LOC106149883 uncharacterized LOC106149883 NW_004955456 10393271 10399680 + 106149883 AGCD01046526;GBDF01121308;XR_001236343 MODEL 8907958 protein-coding Wdr59 WD repeat domain 59 INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to nutrient levels (ortholog); positive regulation of TORC1 signaling (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH macular corneal dystrophy (ortholog); Neurodevelopmental Disorders (ortholog); paraplegia (ortholog); FOUND IN cytosol (ortholog); GATOR2 complex (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955484 2576505 2668001 + 102024115 AGCD01058120;AGCD01058121;AGCD01058122;GBDF01195114;XM_005403454;XM_005403455 XP_005403511;XP_005403512 MODEL 8902002 pseudo LOC102021641 cytoskeleton-associated protein 2 pseudogene NW_004955411 29344641 29345901 - 102021641 AGCD01012235 MODEL 8794673 protein-coding LOC102011927 uncharacterized LOC102011927 NW_004955450 3259515 3262466 + 102011927 AGCD01042426;GBDF01042694;XM_005393550 XP_005393607 MODEL 8706654 protein-coding Ndel1 nudE neurodevelopment protein 1 like 1 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); canonical Wnt signaling pathway (ortholog); cell migration (ortholog); ASSOCIATED WITH juvenile rheumatoid arthritis (ortholog); schizophrenia (ortholog); FOUND IN axon (ortholog); axon hillock (ortholog); cell body (ortholog) NW_004955467 8432806 8486563 - 102015823 AGCD01051450;AGCD01051451;GBCB01002091;XM_005399403;XM_005399405;XM_005399406;XM_005399407;XM_013522099 XP_005399460;XP_005399462;XP_005399463;XP_005399464;XP_013377553 MODEL 8705786 pseudo LOC102008073 39S ribosomal protein L47, mitochondrial pseudogene NW_004955411 8554284 8555056 + 102008073 AGCD01011730 MODEL 8740112 pseudo LOC102017578 non-histone chromosomal protein HMG-14 pseudogene NW_004955487 651945 652237 + 102017578 AGCD01059224 MODEL 8787674 protein-coding LOC102006584 kita-kyushu lung cancer antigen 1 homolog NW_004955490 5015885 5017132 - 102006584 AGCD01060199;GBDF01123449;XM_005404649 XP_005404706 MODEL 8941477 protein-coding Tirap TIR domain containing adaptor protein ENCODES a protein that exhibits identical protein binding (ortholog); molecular adaptor activity (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); cell surface receptor signaling pathway (ortholog); cellular response to bacterial lipopeptide (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH Bacteremia (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); endocytic vesicle (ortholog) NW_004955412 27303548 27315031 + 102004684 AGCD01013233;GBCE01142482;XM_005378502 XP_005378559 MODEL 39132610 snorna SNORA70 Small nucleolar RNA SNORA70 8875475 protein-coding Wdr5b WD repeat domain 5B ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Primary Lymphedema with Myelodysplasia (ortholog) NW_004955427 21698766 21700390 - 102010390 AGCD01027454;GBCE01034152;XM_005386511 XP_005386568 MODEL 8846359 protein-coding LOC102008077 olfactory receptor 8B3 NW_004955412 25357388 25358344 - 102008077 AGCD01013151;XM_005378420 XP_005378477 MODEL 9031206 ncrna LOC102011091 uncharacterized LOC102011091 NW_004955409 10810505 10829604 + 102011091 AGCD01009485;GBDI01024783;XR_259768 MODEL 9041242 pseudo LOC102015673 actin-related protein 2/3 complex subunit 1A pseudogene NW_004955574 43213 44487 + 102015673 AGCD01075080 MODEL 8725773 protein-coding Pus7 pseudouridine synthase 7 ENCODES a protein that exhibits enzyme binding (ortholog); pseudouridine synthase activity (ortholog); tRNA pseudouridine(13) synthase activity (ortholog); INVOLVED IN mRNA pseudouridine synthesis (ortholog); negative regulation of translation (ortholog); regulation of hematopoietic stem cell differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual developmental disorder with abnormal behavior, microcephaly, and short stature (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleus (ortholog) NW_004955410 10062768 10119751 - 102022260 AGCD01010788;AGCD01010789;AGCD01010790;AGCD01010791;GBDJ01004561;XM_005377246;XM_013510649;XM_013510650 XP_005377303;XP_013366103;XP_013366104 MODEL 9003008 protein-coding LOC102010712 huntingtin-interacting protein M-like NW_004955503 3419013 3419370 - 102010712 AGCD01064627;GBDF01001006;GBDK01096844;XM_013505852 XP_013361306 MODEL 8938427 protein-coding Pfkp phosphofructokinase, platelet ENCODES a protein that exhibits 6-phosphofructokinase activity (ortholog); ATP binding (ortholog); fructose-6-phosphate binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); fructose 1,6-bisphosphate metabolic process (ortholog); fructose 6-phosphate metabolic process (ortholog); PARTICIPATES IN glycolysis pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); schizophrenia (ortholog); syndromic microphthalmia 5 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955421 28042973 28098358 - 102021982 AGCD01022307;AGCD01022308;GBDF01008382;XM_005383907;XM_005383908;XM_013513655;XM_013513656;XM_013513657;XM_013513658 XP_005383964;XP_005383965;XP_013369109;XP_013369110;XP_013369111;XP_013369112 MODEL 8757153 protein-coding Socs2 suppressor of cytokine signaling 2 ENCODES a protein that exhibits growth hormone receptor binding (ortholog); insulin-like growth factor receptor binding (ortholog); phosphorylation-dependent protein binding (ortholog); INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (ortholog); cellular response to hormone stimulus (ortholog); growth hormone receptor signaling pathway (ortholog); PARTICIPATES IN interleukin-2 signaling pathway; ASSOCIATED WITH allergic contact dermatitis (ortholog); Breast Neoplasms (ortholog); ductal carcinoma in situ (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955405 30349956 30623849 + 102026937 AGCD01005272;AGCD01005273;AGCD01005274;AGCD01005275;AGCD01005276;GBDI01171449;XM_005374469;XM_005374471;XM_005374472;XM_013518322;XM_013518324;XM_013518330;XM_013518331;XM_013518336;XM_013518338;XM_013518343;XM_013518347;XM_013518351;XM_013518360;XM_013518369;XM_013518373;XM_013518380;XR_001235628;XR_001235629 XP_005374526;XP_005374528;XP_005374529;XP_013373776;XP_013373778;XP_013373784;XP_013373785;XP_013373790;XP_013373792;XP_013373797;XP_013373801;XP_013373805;XP_013373814;XP_013373823;XP_013373827;XP_013373834 MODEL 9045232 protein-coding LOC102012716 PRAME family member 23-like NW_004955618 152655 161495 - 102012716 AGCD01077302;AGCD01077303;AGCD01077304;XM_013510148 XP_013365602 MODEL 8847332 protein-coding Slc26a9 solute carrier family 26 member 9 ENCODES a protein that exhibits ATPase binding (ortholog); bicarbonate transmembrane transporter activity (ortholog); chloride channel activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); chloride transmembrane transport (ortholog); chloride transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955406 41559424 41587748 - 102014741 AGCD01006686;AGCD01006687;GBDK01358978;XM_013523019;XM_013523023;XM_013523029 XP_013378473;XP_013378477;XP_013378483 MODEL 8751760 ncrna LOC102012718 uncharacterized LOC102012718 NW_004955403 26534439 26537509 + 102012718 AGCD01002308;GBCB01077504;XR_001233580;XR_259205 MODEL 9017104 protein-coding LOC102006965 UDP-glucuronosyltransferase 2A3-like NW_004955447 3496754 3533598 + 102006965 AGCD01040619;AGCD01040620;AGCD01040621;AGCD01040622;AGCD01040623;AGCD01040624;XM_005392817;XM_013518564 XP_005392874;XP_013374018 MODEL 8930387 protein-coding Btla B and T lymphocyte associated ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); immune response-regulating cell surface receptor signaling pathway (ortholog); negative regulation of alpha-beta T cell proliferation (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955427 12804467 12837178 - 102026657 AGCD01027226;AGCD01027227;GBDI01324577;XM_005386387 XP_005386444 MODEL 8758203 protein-coding Pnkd PNKD metallo-beta-lactamase domain containing INVOLVED IN negative regulation of neurotransmitter secretion (ortholog); neuromuscular process controlling posture (ortholog); regulation of dopamine metabolic process (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); dystonia (ortholog); FOUND IN membrane (ortholog); mitochondrion (ortholog); presynaptic cytosol (ortholog) NW_004955453 15030436 15104084 - 102012398 AGCD01044881;AGCD01044882;AGCD01044883;AGCD01044884;AGCD01044885;GBDI01171046;XM_005395654;XM_005395655;XM_005395656;XM_013519933 XP_005395711;XP_005395712;XP_005395713;XP_013375387 MODEL 8827655 protein-coding Traf2 TNF receptor associated factor 2 ENCODES a protein that exhibits CD40 receptor binding (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN CD27 signaling pathway (ortholog); CD40 signaling pathway (ortholog); cellular response to nitric oxide (ortholog); PARTICIPATES IN c-Jun N-terminal kinases MAPK signaling pathway; ceramide signaling pathway; p38 MAPK signaling pathway; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN CD40 receptor complex (ortholog); cell cortex (ortholog); cytoplasm (ortholog) NW_004955513 4964692 4984359 + 102025152 AGCD01066949;GBCE01188361;XM_013506639;XM_013506640 XP_013362093;XP_013362094 MODEL 9054907 protein-coding Pigt phosphatidylinositol glycan anchor biosynthesis class T ENCODES a protein that exhibits GPI anchor binding (ortholog); INVOLVED IN attachment of GPI anchor to protein (ortholog); GPI anchored protein biosynthesis (ortholog); neuron apoptotic process (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); Developmental Disabilities (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); GPI-anchor transamidase complex (ortholog) NW_004955445 11916898 11925578 - 102005645 AGCD01039724;AGCD01039725;GBDF01046377;XM_005392426 XP_005392483 MODEL 9018643 protein-coding Tjap1 tight junction associated protein 1 INVOLVED IN Golgi organization (ortholog); ASSOCIATED WITH infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); Golgi apparatus (ortholog) NW_004955437 9314472 9337021 + 102008661 AGCD01034525;AGCD01034526;GBCE01098674;XM_005389769;XM_005389770;XM_005389773;XM_005389774;XM_005389776;XM_013516816;XM_013516818;XM_013516819 XP_005389826;XP_005389827;XP_005389830;XP_005389831;XP_005389833;XP_013372270;XP_013372272;XP_013372273 MODEL 8815333 protein-coding Pax1 paired box 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); CD4-positive, alpha-beta T cell differentiation (ortholog); CD8-positive, alpha-beta T cell differentiation (ortholog); ASSOCIATED WITH familial hyperinsulinemic hypoglycemia 1 (ortholog); genetic disease (ortholog); Goldenhar syndrome (ortholog) NW_004955415 29413253 29420682 + 102024455 AGCD01016652;GBBH01144111;GBCE01000367;XM_005380955 XP_005381012 MODEL 8897814 protein-coding Srrm1 serine and arginine repetitive matrix 1 PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH gestational diabetes (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); spliceosomal complex (ortholog) NW_004955452 4401089 4433986 + 102003721 AGCD01043981;GBDF01081884;XM_005394812;XM_005394813;XM_005394815;XM_005394816;XM_013519673 XP_005394869;XP_005394870;XP_005394872;XP_005394873;XP_013375127 MODEL 8924258 protein-coding Rab9a RAB9A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN positive regulation of exocytosis (ortholog); receptor-mediated endocytosis (ortholog); regulation of protein localization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Joubert syndrome 1 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); late endosome (ortholog); lysosome (ortholog) NW_004955519 4489159 4496089 - 102026144 AGCD01067983;GBBH01090631;XM_005409203;XM_005409204;XM_005409206;XM_013506993;XR_001231857 XP_005409260;XP_005409261;XP_005409263;XP_013362447 MODEL 9014257 ncrna LOC102003737 uncharacterized LOC102003737 NW_004955459 3075325 3077325 - 102003737 AGCD01048007;GBCQ01075158;XR_263012 MODEL 10252126 protein-coding LOC106147052 janus kinase and microtubule-interacting protein 2-like NW_004955514 4087297 4102789 + 106147052 AGCD01067127;XM_013506748 XP_013362202 MODEL 8916024 protein-coding Psmd9 proteasome 26S subunit, non-ATPase 9 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN negative regulation of insulin secretion (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of insulin secretion (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN nucleus (ortholog); proteasome regulatory particle, base subcomplex (ortholog) NW_004955482 6555902 6567481 - 102009946 AGCD01057403;GBCB01039020;XM_005403105 XP_005403162 MODEL 8762067 protein-coding Trmt44 tRNA methyltransferase 44 homolog NW_004955514 2618671 2636822 - 102008970 AGCD01067085;GBBH01206510;XM_005408776 XP_005408833 MODEL 9041056 protein-coding LOC102011531 vomeronasal type-1 receptor 90-like NW_004955414 14947178 14948107 - 102011531 AGCD01015163;XM_005380439 XP_005380496 MODEL 8776154 protein-coding Plau plasminogen activator, urokinase ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to fluid shear stress (ortholog); cellular response to glucose stimulus (ortholog); PARTICIPATES IN fibrinolysis pathway; fibroblast growth factor signaling pathway; ASSOCIATED WITH otitis media; Acute Lung Injury (ortholog); adenocarcinoma (ortholog); FOUND IN cell surface (ortholog); extracellular space (ortholog); protein complex involved in cell-matrix adhesion (ortholog) NW_004955437 17995726 18000542 - 102006955 AGCD01034771;GBBH01166562;XM_005389937 XP_005389994 MODEL 8894049 protein-coding Pigu phosphatidylinositol glycan anchor biosynthesis class U ENCODES a protein that exhibits GPI anchor binding (ortholog); GPI-anchor transamidase activity (ortholog); INVOLVED IN attachment of GPI anchor to protein (ortholog); GPI anchor biosynthetic process (ortholog); GPI anchored protein biosynthesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); FOUND IN GPI-anchor transamidase complex (ortholog); plasma membrane (ortholog) NW_004955422 26685060 26774261 + 102022399 AGCD01023296;AGCD01023297;AGCD01023298;AGCD01023299;AGCD01023300;AGCD01023301;GBDF01124039;XM_005384827 XP_005384884 MODEL 10348630 protein-coding LOC106149884 translation initiation factor IF-2-like NW_004955456 5706237 5709195 - 106149884 AGCD01046347;GBDI01306728;XM_013520559;XM_013520560 XP_013376013;XP_013376014 MODEL 9014372 protein-coding Lin28a lin-28 homolog A ENCODES a protein that exhibits G-quadruplex RNA binding (ortholog); miRNA binding (ortholog); mRNA binding (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); germ cell development (ortholog); miRNA catabolic process (ortholog); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); disease of cellular proliferation (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955452 5793583 5808662 + 102017624 AGCD01044055;GBDF01079508;XM_005394857 XP_005394914 MODEL 9018754 protein-coding Sertad3 SERTA domain containing 3 INVOLVED IN negative regulation of cell growth (ortholog); positive regulation of DNA-templated transcription (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog); FOUND IN nucleus (ortholog) NW_004955578 837686 841561 + 102012380 AGCD01075499;GBDF01122108;XM_005414045 XP_005414102 MODEL 8814255 protein-coding LOC102009604 laforin NW_004955477 658249 660233 - 102009604 AGCD01055492;AGCD01055493;GBDJ01162178;XM_005402077 XP_005402134 MODEL 8967950 protein-coding Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ENCODES a protein that exhibits ATP binding (ortholog); calcium ion binding (ortholog); cyclic-GMP-AMP hydrolase activity (ortholog); INVOLVED IN 3'-phosphoadenosine 5'-phosphosulfate metabolic process (ortholog); adipose tissue development (ortholog); adult locomotory behavior (ortholog); PARTICIPATES IN insulin signaling pathway; niacin metabolic pathway; pantothenic acid metabolic pathway; ASSOCIATED WITH Aortic Calcification (ortholog); aortic valve disease 1 (ortholog); arterial calcification of infancy (ortholog); FOUND IN apical dendrite (ortholog); basal dendrite (ortholog); cell body (ortholog) NW_004955436 12416147 12477214 + 102030663 AGCD01033841;GBCE01001596;GBDJ01419766;XM_013516652 XP_013372106 MODEL 8808594 protein-coding LOC102023357 uncharacterized LOC102023357 NW_004955417 30963477 30973283 + 102023357 AGCD01018635;GBCQ01015420;XM_005382001 XP_005382058 MODEL 39133501 snrna U4 U4 spliceosomal RNA 8886810 protein-coding Pde7b phosphodiesterase 7B ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); immunodeficiency 27A (ortholog); Peroxisome biogenesis disorder 9B (ortholog) NW_004955439 686197 985591 - 102025844 AGCD01035593;AGCD01035594;AGCD01035595;GBCE01171155;XM_005390481;XM_005390482;XM_005390484;XM_013517377;XM_013517378 XP_005390538;XP_005390539;XP_005390541;XP_013372831;XP_013372832 MODEL 9025652 pseudo LOC102006967 transmembrane and TPR repeat-containing protein 3 pseudogene NW_004955582 159962 162499 - 102006967 AGCD01075747 MODEL 39133451 snorna SNORD58 Small nucleolar RNA SNORD58 8920420 ncrna LOC102012719 uncharacterized LOC102012719 NW_004955403 40191140 40192388 - 102012719 AGCD01002668;AGCD01002669;GBDF01211863;XR_259232 MODEL 8748328 pseudo LOC102017579 elongation factor 1-beta-like NW_004955489 9292062 9293395 + 102017579 AGCD01060035 MODEL 39132601 snorna SNORA70 Small nucleolar RNA SNORA70 39133502 snrna U4 U4 spliceosomal RNA 8756139 ncrna LOC102008079 uncharacterized LOC102008079 NW_004955413 2802254 2809284 + 102008079 AGCD01013559;GBCB01093657;XR_001233052;XR_260052 MODEL 39133450 snorna SNORD58 Small nucleolar RNA SNORD58 39131919 snorna SNORA70 Small nucleolar RNA SNORA70 8821965 protein-coding Prpf31 pre-mRNA processing factor 31 ENCODES a protein that exhibits identical protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); ribonucleoprotein complex localization (ortholog); snoRNA localization (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; spliceosome pathway; ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); Intellectual Developmental Disorder with Speech Delay, Autism, and Dysmorphic Facies (ortholog); FOUND IN Cajal body (ortholog); MLL1 complex (ortholog); nuclear speck (ortholog) NW_004955604 125489 136209 - 102014515 AGCD01076864;GBDF01079967;XM_005414861;XM_005414862;XM_005414863 XP_005414918;XP_005414919;XP_005414920 MODEL 8728966 pseudo LOC102010348 zinc finger CCHC domain-containing protein 8-like NW_004955411 3492784 3499691 - 102010348 AGCD01011553 MODEL 9040917 protein-coding Pus7l pseudouridine synthase 7 like ENCODES a protein that exhibits pseudouridine synthase activity (ortholog); INVOLVED IN mRNA pseudouridine synthesis (ortholog) NW_004955500 2992767 3010129 - 102006048 AGCD01063724;GBCE01022554;GBCE01034445;XM_005406586 XP_005406643 MODEL 8907127 protein-coding Pou4f3 POU class 4 homeobox 3 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN axon extension (ortholog); inner ear auditory receptor cell differentiation (ortholog); inner ear development (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 15 (ortholog); autosomal recessive nonsyndromic deafness (ortholog); Deafness (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955415 7777296 7778622 - 102016049 AGCD01016056;XM_005380674 XP_005380731 MODEL 9016101 pseudo LOC102011930 tripartite motif-containing protein 59-like NW_004955450 13491725 13492879 - 102011930 AGCD01042735 MODEL 39131920 snorna SNORA70 Small nucleolar RNA SNORA70 8799894 pseudo LOC102011538 peptidyl-prolyl cis-trans isomerase A pseudogene NW_004955477 4017638 4038493 + 102011538 AGCD01055577 MODEL 8758854 protein-coding Psme1 proteasome activator subunit 1 ENCODES a protein that exhibits endopeptidase activator activity (ortholog); INVOLVED IN antigen processing and presentation of exogenous antigen (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); carcinoma (ortholog) NW_004955409 36262114 36264996 - 102008384 AGCD01010454;GBCB01003421;XM_005377033;XM_013510409 XP_005377090;XP_013365863 MODEL 8969136 protein-coding Ndfip1 Nedd4 family interacting protein 1 ENCODES a protein that exhibits WW domain binding (ortholog); INVOLVED IN CD4-positive, alpha-beta T cell proliferation (ortholog); intracellular iron ion homeostasis (ortholog); negative regulation of CD4-positive, alpha-beta T cell proliferation (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cell cortex (ortholog); Golgi apparatus (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955415 11643846 11666131 - 102028293 AGCD01016168;GBBH01000930;XM_013512124 XP_013367578 MODEL 8882643 protein-coding Smdt1 single-pass membrane protein with aspartate rich tail 1 ENCODES a protein that exhibits channel activator activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN calcium import into the mitochondrion (ortholog); cellular response to calcium ion starvation (ortholog); mitochondrial calcium ion homeostasis (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); Developmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955413 27480938 27485729 + 102004688 AGCD01014509;GBDF01082917;XM_005379397;XM_005379398;XM_013511583 XP_005379454;XP_005379455;XP_013367037 MODEL 8965483 protein-coding Pnkp polynucleotide kinase 3'-phosphatase ENCODES a protein that exhibits ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity (ortholog); polynucleotide 3'-phosphatase activity (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); double-strand break repair via nonhomologous end joining (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH ataxia with oculomotor apraxia type 1 (ortholog); ataxia-oculomotor apraxia type 4 (ortholog); Charcot-Marie-Tooth disease type 2B2 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955559 1064924 1070120 + 102018779 AGCD01073627;AGCD01073628;GBCB01005335;GBCQ01040513;XM_013508947 XP_013364401 MODEL 8800487 protein-coding Wdr6 WD repeat domain 6 ENCODES a protein that exhibits enzyme regulator activity (ortholog); insulin receptor substrate binding (ortholog); tRNA binding (ortholog); INVOLVED IN G1 to G0 transition (ortholog); negative regulation of autophagy (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); carnitine-acylcarnitine translocase deficiency (ortholog); FOUND IN COP9 signalosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955532 1029857 1039020 + 102008347 AGCD01070161;AGCD01070162;GBCB01099321;XM_005410186;XM_013507579 XP_005410243;XP_013363033 MODEL 8820574 protein-coding LOC102019137 bcl-2-binding component 3-like NW_004955406 10664969 10668486 - 102019137 AGCD01005868;GBCE01089598;GBCQ01113563;XM_013520537 XP_013375991 MODEL 9006531 protein-coding Rilpl2 Rab interacting lysosomal protein like 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN epithelial cell morphogenesis (ortholog); protein transport from ciliary membrane to plasma membrane (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN centrosome (ortholog); cilium (ortholog); cytosol (ortholog) NW_004955482 5470965 5482600 + 102018398 AGCD01057333;AGCD01057334;AGCD01057335;AGCD01057336;GBBH01060488;XM_005403038 XP_005403095 MODEL 8941225 protein-coding Slc5a11 solute carrier family 5 member 11 ENCODES a protein that exhibits myo-inositol transmembrane transporter activity (ortholog); INVOLVED IN myo-inositol transport (ortholog); regulation of transporter activity (ortholog); FOUND IN plasma membrane (ortholog) NW_004955493 3259646 3317694 + 102027540 AGCD01060985;AGCD01060986;AGCD01060987;AGCD01060988;GBCQ01143291;XM_005405114;XM_005405115;XM_005405116;XM_005405117 XP_005405171;XP_005405172;XP_005405173;XP_005405174 MODEL 8882996 protein-coding P2ry1 purinergic receptor P2Y1 ENCODES a protein that exhibits A1 adenosine receptor binding (ortholog); ADP binding (ortholog); ATP binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); blood vessel diameter maintenance (ortholog); cellular response to purine-containing compound (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); impotence (ortholog); thrombosis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cell body (ortholog) NW_004955448 4366706 4372626 + 102011488 AGCD01041344;GBDF01176463;XM_005393054 XP_005393111 MODEL 8700369 protein-coding Tsga13 testis specific 13 ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955410 36964398 36982042 + 102009259 AGCD01011441;AGCD01011442;GBDF01010268;XM_005377551;XM_005377552;XM_005377553;XM_013510641 XP_005377608;XP_005377609;XP_005377610;XP_013366095 MODEL 8919008 protein-coding Rassf10 Ras association domain family member 10 INVOLVED IN positive regulation of neural precursor cell proliferation (ortholog); positive regulation of neurogenesis (ortholog); ASSOCIATED WITH intellectual disability (ortholog) NW_004955414 28405024 28407734 + 102016260 AGCD01015681;GBBH01165129;XM_005380309 XP_005380366 MODEL 8891497 protein-coding Rtn2 reticulon 2 INVOLVED IN gene expression (ortholog); intracellular protein transmembrane transport (ortholog); negative regulation of amyloid-beta formation (ortholog); ASSOCIATED WITH autosomal recessive distal hereditary motor neuronopathy 11 (ortholog); genetic disease (ortholog); hereditary spastic paraplegia (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum (ortholog); intermediate filament (ortholog) NW_004955574 1543 11476 - 102013024 AGCD01075076;GBCB01006561;GBDJ01354782;XM_005413783 XP_005413840 MODEL 39133503 snrna U4 U4 spliceosomal RNA 8998209 pseudo LOC102019143 ubiquitin-60S ribosomal protein L40 pseudogene NW_004955407 36420998 36445058 - 102019143 AGCD01007767;AGCD01007768 MODEL 8897578 protein-coding Slc27a1 solute carrier family 27 member 1 ENCODES a protein that exhibits biotin transmembrane transporter activity (ortholog); efflux transmembrane transporter activity (ortholog); fatty acid transmembrane transporter activity (ortholog); INVOLVED IN adiponectin-activated signaling pathway (ortholog); biotin import across plasma membrane (ortholog); biotin transport (ortholog); ASSOCIATED WITH familial hyperlipidemia (ortholog); glucose intolerance (ortholog); hyperinsulinism (ortholog); FOUND IN basal plasma membrane (ortholog); caveola (ortholog); endoplasmic reticulum (ortholog) NW_004955524 803793 821920 - 102025835 AGCD01068709;AGCD01068710;AGCD01068711;AGCD01068712;AGCD01068713;GBCB01007460;GBCB01007461;XM_013507238 XP_013362692 MODEL 9033587 protein-coding Rimbp2 RIMS binding protein 2 ENCODES a protein that exhibits structural constituent of presynaptic active zone (ortholog); voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels (ortholog); voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (ortholog); INVOLVED IN regulation of calcium-dependent activation of synaptic vesicle fusion (ortholog); regulation of presynaptic membrane potential (ortholog); FOUND IN calyx of Held (ortholog); glutamatergic synapse (ortholog); presynaptic active zone cytoplasmic component (ortholog) NW_004955482 1326628 1431358 + 102003342 AGCD01057214;GBDF01277317;XM_013503718;XM_013503719;XM_013503720;XM_013503721;XM_013503722;XM_013503723;XM_013503724;XM_013503725;XM_013503726;XM_013503727;XM_013503728 XP_013359172;XP_013359173;XP_013359174;XP_013359175;XP_013359176;XP_013359177;XP_013359178;XP_013359179;XP_013359180;XP_013359181;XP_013359182 MODEL 10226356 protein-coding LOC106149885 uncharacterized LOC106149885 NW_004955456 5812188 5827200 - 106149885 AGCD01046350;AGCD01046351;AGCD01046352;GBBH01063771;XM_013520561 XP_013376015 MODEL 8953675 pseudo LOC102011094 ubiquitin-conjugating enzyme E2 D3-like NW_004955409 26283548 26284242 - 102011094 AGCD01010170 MODEL 8753712 protein-coding LOC102024431 olfactory receptor 9-like NW_004955458 3112558 3113496 - 102024431 AGCD01047271;XM_013520801 XP_013376255 MODEL 8824573 protein-coding LOC102006973 translational activator GCN1-like NW_004956042 4662 8692 - 102006973 AGCD01078929;XM_005415165 XP_005415222 MODEL 8945134 pseudo LOC102012720 translationally-controlled tumor protein pseudogene NW_004955403 40178459 40178980 - 102012720 AGCD01002666 MODEL 8769604 protein-coding Psme2 proteasome activator subunit 2 ENCODES a protein that exhibits endopeptidase activator activity (ortholog); identical protein binding (ortholog); INVOLVED IN antigen processing and presentation of exogenous antigen (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); esophagus squamous cell carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955409 36252847 36257021 + 102009919 AGCD01010454;GBDF01048370;XM_005377038 XP_005377095 MODEL 9002970 protein-coding Pde8a phosphodiesterase 8A ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); kinase binding (ortholog); INVOLVED IN cellular response to epidermal growth factor stimulus (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955416 14063117 14204297 - 102009174 AGCD01017242;AGCD01017243;AGCD01017244;AGCD01017245;AGCD01017246;AGCD01017247;GBDF01307363;XM_005381485;XM_013512564 XP_005381542;XP_013368018 MODEL 8741994 protein-coding Traf3 TNF receptor associated factor 3 ENCODES a protein that exhibits identical protein binding (ortholog); protein kinase binding (ortholog); protein phosphatase binding (ortholog); INVOLVED IN negative regulation of NF-kappaB transcription factor activity (ortholog); positive regulation of type I interferon production (ortholog); regulation of cytokine production (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); Herpes Simplex Encephalitis (ortholog); high grade glioma (ortholog); FOUND IN CD40 receptor complex (ortholog); cytoplasmic side of plasma membrane (ortholog); endosome (ortholog) NW_004955538 1954152 2013367 + 102004116 AGCD01071093;GBBH01188734;XM_005410757;XM_005410759;XM_005410760;XM_005410761;XM_005410762;XM_013507875;XM_013507877 XP_005410814;XP_005410816;XP_005410817;XP_005410818;XP_005410819;XP_013363329;XP_013363331 MODEL 8836033 protein-coding Pax2 paired box 2 ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN brain morphogenesis (ortholog); branching involved in ureteric bud morphogenesis (ortholog); camera-type eye development (ortholog); ASSOCIATED WITH CAKUT (ortholog); CAKUT1 (ortholog); chronic kidney disease (ortholog); FOUND IN centriolar satellite (ortholog); microtubule organizing center (ortholog); nucleoplasm (ortholog) NW_004955485 9351913 9430607 - 102007128 AGCD01058758;AGCD01058759;AGCD01058760;AGCD01058761;AGCD01058762;AGCD01058763;GBCQ01034440;GBCQ01034447;XM_013504124;XM_013504125 XP_013359578;XP_013359579 MODEL 8710746 protein-coding LOC102021642 serpin B9-like NW_004955465 10392685 10403396 - 102021642 AGCD01050508;XM_005398915 XP_005398972 MODEL 8725998 ncrna LOC102006589 uncharacterized LOC102006589 NW_004955495 6548347 6552199 + 102006589 AGCD01062085;GBDF01303427;XR_264164 MODEL 8808218 protein-coding Pnldc1 PARN like ribonuclease domain containing exonuclease 1 ENCODES a protein that exhibits poly(A)-specific ribonuclease activity (ortholog); INVOLVED IN blastocyst formation (ortholog); nuclear-transcribed mRNA poly(A) tail shortening (ortholog); piRNA processing (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); male infertility (ortholog); oligospermia (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955439 21039638 21058558 - 102014496 AGCD01036135;GBDF01220476;XM_005390708;XM_005390709;XM_013517325;XM_013517326 XP_005390765;XP_005390766;XP_013372779;XP_013372780 MODEL 8709888 ncrna LOC102010349 uncharacterized LOC102010349 NW_004955465 9065822 9075222 + 102010349 AGCD01050484;GBDK01032471;XR_001236720;XR_263253 MODEL 8914164 protein-coding Trmt5 tRNA methyltransferase 5 INVOLVED IN mitochondrial tRNA methylation (ortholog); ASSOCIATED WITH Branchiootic Syndrome 3 (ortholog); combined oxidative phosphorylation deficiency 26 (ortholog); genetic disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955466 8679795 8690203 + 102014123 AGCD01050997;GBBH01052220;XM_005399167;XM_013521928;XM_013521929;XM_013521930;XM_013521931 XP_005399224;XP_013377382;XP_013377383;XP_013377384;XP_013377385 MODEL 39131454 protein-coding LIN28B lin-28 homolog B 8831578 protein-coding Pigv phosphatidylinositol glycan anchor biosynthesis class V ENCODES a protein that exhibits alpha-1,6-mannosyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); hyperphosphatasia with impaired intellectual development syndrome (ortholog); hyperphosphatasia with impaired intellectual development syndrome 1 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955452 6128262 6139204 + 102021833 AGCD01044089;GBDK01013138;XM_005394872;XM_005394873;XM_005394874;XM_005394875;XM_005394876;XM_013519561;XM_013519562;XM_013519563;XM_013519564 XP_005394929;XP_005394930;XP_005394931;XP_005394932;XP_005394933;XP_013375015;XP_013375016;XP_013375017;XP_013375018 MODEL 8774326 protein-coding Rela RELA proto-oncogene, NF-kB subunit ENCODES a protein that exhibits actinin binding (ortholog); ankyrin repeat binding (ortholog); chromatin binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); antiviral innate immune response (ortholog); canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN ceramide signaling pathway; interleukin-1 signaling pathway; interleukin-12 signaling pathway; ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); adenocarcinoma (ortholog); Aicardi-Goutieres Syndrome 3 (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955422 19602930 19612263 + 102030643 AGCD01023023;AGCD01023024;GBCE01054806;GBDK01101045;XM_005384468 XP_005384525 MODEL 8955692 ncrna LOC102009605 uncharacterized LOC102009605 NW_004955478 6496663 6507303 + 102009605 AGCD01055896;GBDF01194619;XR_001230836;XR_001230837;XR_001230838;XR_263699 MODEL 8880742 protein-coding Sertad4 SERTA domain containing 4 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955489 1947819 1958434 - 102019070 AGCD01059855;AGCD01059856;GBBH01121747;GBDJ01175985;XM_005404520 XP_005404577 MODEL 8718863 ncrna LOC102023358 uncharacterized LOC102023358 NW_004955481 7044388 7067422 - 102023358 AGCD01057048;AGCD01057049;AGCD01057050;AGCD01057051;GBBH01013120;XR_263788 MODEL 8963385 protein-coding Btn1a1 butyrophilin subfamily 1 member A1 NW_004955483 392749 409947 - 102012199 AGCD01057609;GBCB01025102;XM_005403280;XM_005403281;XM_005403282;XM_005403283;XM_005403284;XM_013503766 XP_005403337;XP_005403338;XP_005403339;XP_005403340;XP_005403341;XP_013359220 MODEL 8850855 ncrna LOC102015674 uncharacterized LOC102015674 NW_004955447 17861375 17867429 + 102015674 AGCD01041142;GBBH01047912;XR_001235743;XR_262442 MODEL 9059646 protein-coding Pusl1 pseudouridine synthase like 1 ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); mitochondrion (ortholog) NW_004955486 9491613 9494746 - 102025803 AGCD01059188;GBCB01051116;XM_005404237;XM_013504191;XM_013504193;XM_013504194 XP_005404294;XP_013359645;XP_013359647;XP_013359648 MODEL 39131921 snorna SNORA70 Small nucleolar RNA SNORA70 8980780 protein-coding Ndfip2 Nedd4 family interacting protein 2 ENCODES a protein that exhibits WW domain binding (ortholog); INVOLVED IN negative regulation of gene expression (ortholog); negative regulation of protein transport (ortholog); negative regulation of transporter activity (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955404 27981215 28051238 - 102007850 AGCD01003941;AGCD01003942;AGCD01003943;AGCD01003944;GBCB01021606;XM_005374124 XP_005374181 MODEL 8777477 ncrna LOC102005544 uncharacterized LOC102005544 NW_004955403 19218644 19229973 + 102005544 AGCD01002120;GBDF01056356;XR_001233395 MODEL 8741680 protein-coding LOC102017580 actin-like NW_004955422 15156081 15198900 + 102017580 AGCD01022876;GBDF01053097;XM_013513883;XM_013513884;XM_013513885 XP_013369337;XP_013369338;XP_013369339 MODEL 8836594 protein-coding Rab9b RAB9B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); identical protein binding (ortholog); INVOLVED IN receptor-mediated endocytosis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); autosomal recessive nonsyndromic deafness 9 (ortholog); FOUND IN phagocytic vesicle (ortholog) NW_004955548 825208 829815 - 102028901 AGCD01072344;GBCQ01164674;XM_005411999 XP_005412056 MODEL 8771812 protein-coding Tjp1 tight junction protein 1 ENCODES a protein that exhibits beta-catenin binding (ortholog); connexin binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actomyosin structure organization (ortholog); adherens junction maintenance (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH Angelman syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN adherens junction (ortholog); apical junction complex (ortholog); apical part of cell (ortholog) NW_004955416 28640807 28869717 + 102012321 AGCD01017634;AGCD01017635;AGCD01017636;AGCD01017637;AGCD01017638;GBDF01053729;XM_005381650;XM_005381653;XM_005381654;XM_005381656;XM_005381657 XP_005381707;XP_005381710;XP_005381711;XP_005381713;XP_005381714 MODEL 8840529 pseudo LOC102003747 aldo-keto reductase family 1 member B10-like NW_004955467 4392827 4400286 + 102003747 AGCD01051366 MODEL 8982547 protein-coding Pfn1 profilin 1 ENCODES a protein that exhibits actin binding (ortholog); actin monomer binding (ortholog); adenyl-nucleotide exchange factor activity (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); modification of postsynaptic actin cytoskeleton (ortholog); modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 18 (ortholog); congenital myasthenic syndrome 4A (ortholog); FOUND IN cell cortex (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955467 10357838 10360651 - 102018583 AGCD01051561;GBDF01004937;XM_005399610 XP_005399667 MODEL 10239047 protein-coding LOC106147053 uncharacterized LOC106147053 NW_004955514 4105400 4112478 + 106147053 AGCD01067127;GBDF01057017;XM_013506749 XP_013362203 MODEL 9063062 protein-coding Srrm2 serine/arginine repetitive matrix 2 ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 72 (ortholog); developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); FOUND IN Cajal body (ortholog); catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog) NW_004955442 14478350 14498152 + 102014293 AGCD01037821;GBBH01000548;XM_005391396;XM_005391398;XM_013517820;XM_013517821;XM_013517822 XP_005391453;XP_005391455;XP_013373274;XP_013373275;XP_013373276 MODEL 8747724 protein-coding Plaur plasminogen activator, urokinase receptor ENCODES a protein that exhibits enzyme binding (ortholog); protein domain specific binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN epithelial cell differentiation involved in prostate gland development (ortholog); mesenchymal cell differentiation (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH Alcoholic Liver Diseases (ortholog); autistic disorder (ortholog); Bacteremia (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog); protein complex involved in cell-matrix adhesion (ortholog) NW_004955555 1378505 1393395 - 102017395 AGCD01073075;AGCD01073076;AGCD01073077;GBCE01155133;GBCQ01139720;XM_013508758 XP_013364212 MODEL 8745275 protein-coding P2ry12 purinergic receptor P2Y12 ENCODES a protein that exhibits G protein-coupled adenosine receptor activity (ortholog); G protein-coupled ADP receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); calcium ion transmembrane transport (ortholog); PARTICIPATES IN clopidogrel pharmacodynamics pathway; clopidogrel pharmacokinetics pathway; ticlopidine pharmacodynamics pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acute Lung Injury (ortholog); arteriosclerosis (ortholog); FOUND IN basal plasma membrane (ortholog); caveola (ortholog); cell body membrane (ortholog) NW_004955448 2442368 2488567 - 102028593 AGCD01041282;AGCD01041283;GBDK01095185;XM_005393019;XM_005393020 XP_005393076;XP_005393077 MODEL 8953515 protein-coding LOC102008473 zinc finger protein OZF-like NW_004955569 1649162 1664829 + 102008473 AGCD01074673;AGCD01074674;GBDJ01263726;XM_013509377 XP_013364831 MODEL 8914392 protein-coding Traf3ip1 TRAF3 interacting protein 1 INVOLVED IN cilium assembly (ortholog); defense response to virus (ortholog); embryonic camera-type eye development (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); FOUND IN axoneme (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955542 2264472 2301083 - 102024052 AGCD01071516;AGCD01071517;GBDJ01272447;GBDK01234988;XM_005411182 XP_005411239 MODEL 8959268 protein-coding Rassf2 Ras association domain family member 2 ENCODES a protein that exhibits protein kinase activity (ortholog); INVOLVED IN bone remodeling (ortholog); canonical NF-kappaB signal transduction (ortholog); homeostasis of number of cells (ortholog); ASSOCIATED WITH Huntington's disease-like 1 (ortholog); Inosine Triphosphatase Deficiency (ortholog); Lymphatic Metastasis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955415 15500726 15542939 - 102008844 AGCD01016346;AGCD01016347;AGCD01016348;AGCD01016349;GBDI01218507;XM_005380820;XM_013512321;XM_013512322;XM_013512323;XM_013512324;XM_013512325;XM_013512326 XP_005380877;XP_013367775;XP_013367776;XP_013367777;XP_013367778;XP_013367779;XP_013367780 MODEL 8776131 pseudo LOC102006591 mimitin, mitochondrial pseudogene NW_004955423 25450663 25451169 - 102006591 AGCD01024075 MODEL 8773591 protein-coding LOC102018719 phospholipid scramblase 2-like NW_004955474 10991013 11067397 + 102018719 AGCD01054605;AGCD01054606;AGCD01054607;AGCD01054608;GBDF01044008;XM_005401433;XM_005401434;XM_005401435;XM_005401436 XP_005401490;XP_005401491;XP_005401492;XP_005401493 MODEL 8830969 protein-coding Pou5f1 POU class 5 homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN blastocyst development (ortholog); blastocyst growth (ortholog); BMP signaling pathway (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH amphetamine abuse (ortholog); Carcinogenesis (ortholog); congenital heart disease (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955583 995707 1003202 - 102026057 AGCD01075876;GBDF01041047;XM_005414337;XM_013509821;XM_013509822 XP_005414394;XP_013365275;XP_013365276 MODEL 8817327 pseudo LOC102011539 succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial pseudogene NW_004955477 3913414 3916387 - 102011539 AGCD01055577 MODEL 8973084 protein-coding LOC102011936 nuclear pore complex protein Nup50-like NW_004955801 1035 19256 - 102011936 AGCD01078375;GBDK01393605;XM_005415113;XM_013510195;XM_013510196 XP_005415170;XP_013365649;XP_013365650 MODEL 8780782 pseudo LOC102010717 probable ATP-dependent RNA helicase DDX41 NW_004955428 2954658 3061479 + 102010717 AGCD01027644;AGCD01027645;AGCD01027646;AGCD01027647;AGCD01027648 MODEL 8933853 protein-coding Smg1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase ENCODES a protein that exhibits diacylglycerol-dependent serine/threonine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); telomeric DNA binding (ortholog); INVOLVED IN DNA damage response (ortholog); nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); peptidyl-serine phosphorylation (ortholog); FOUND IN chromatoid body (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955442 2553135 2651772 - 102003069 AGCD01037468;AGCD01037469;AGCD01037470;GBBH01186712;XM_005391088;XM_005391089;XM_005391090;XM_013517825 XP_005391145;XP_005391146;XP_005391147;XP_013373279 MODEL 8911810 protein-coding Pigw phosphatidylinositol glycan anchor biosynthesis class W ENCODES a protein that exhibits glucosaminyl-phosphatidylinositol O-acyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 17q12 deletion syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955451 1388474 1391671 - 102004224 AGCD01042967;GBBH01077894;XM_005393950;XM_005393951;XM_013519338 XP_005394007;XP_005394008;XP_013374792 MODEL 8716572 pseudo LOC102006974 40S ribosomal protein S10 pseudogene NW_004955404 27148218 27148697 + 102006974 AGCD01003909 MODEL 8919912 protein-coding Pou5f2 POU domain class 5, transcription factor 2 ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); ASSOCIATED WITH Bosch-Boonstra-Schaaf optic atrophy syndrome (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955418 18493622 18494871 + 102020667 AGCD01019168;GBDF01005065;XM_005382262 XP_005382319 MODEL 8876798 ncrna LOC102024432 uncharacterized LOC102024432 NW_004955460 10071259 10078235 - 102024432 AGCD01048571;AGCD01048572;GBDF01024354;XR_001236506;XR_001236507 MODEL 8883652 protein-coding Traf3ip2 TRAF3 interacting protein 2 ENCODES a protein that exhibits signaling receptor binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN B cell affinity maturation (ortholog); B cell apoptotic process (ortholog); B cell homeostasis (ortholog); ASSOCIATED WITH atopic dermatitis (ortholog); Candidiasis, Familial, 8 (ortholog); Discoid Lupus Erythematosus (ortholog); FOUND IN cytoplasmic vesicle (ortholog); nucleus (ortholog) NW_004955411 36328152 36363614 - 102003742 AGCD01012471;AGCD01012472;GBDK01225046;XM_005377909;XM_013510877 XP_005377966;XP_013366331 MODEL 39132439 snorna SNORA70 Small nucleolar RNA SNORA70 8730900 protein-coding Slc5a12 solute carrier family 5 member 12 ENCODES a protein that exhibits lactate transmembrane transporter activity (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN apical plasma membrane (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955476 6067657 6117983 - 102014134 AGCD01055322;AGCD01055323;GBCQ01008443;XM_005401744 XP_005401801 MODEL 8968450 protein-coding Psme3 proteasome activator subunit 3 ENCODES a protein that exhibits endopeptidase activator activity (ortholog); identical protein binding (ortholog); MDM2/MDM4 family protein binding (ortholog); INVOLVED IN negative regulation of extrinsic apoptotic signaling pathway (ortholog); regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); FOUND IN ciliary basal body (ortholog); cilium (ortholog); cytosol (ortholog) NW_004955451 16631379 16637331 + 102023658 AGCD01043696;AGCD01043697;GBDF01008333;XM_005394477;XM_005394479 XP_005394534;XP_005394536 MODEL 8741306 protein-coding Rtn3 reticulon 3 INVOLVED IN endoplasmic reticulum tubular network formation (ortholog); endoplasmic reticulum tubular network organization (ortholog); negative regulation of amyloid-beta formation (ortholog); ASSOCIATED WITH chronic kidney disease (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); glutamatergic synapse (ortholog) NW_004955422 21289652 21358865 - 102029871 AGCD01023114;AGCD01023115;AGCD01023116;GBDF01082603;XM_005384670;XM_013514093;XM_013514094;XM_013514095 XP_005384727;XP_013369547;XP_013369548;XP_013369549 MODEL 8996574 protein-coding Pde8b phosphodiesterase 8B ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); INVOLVED IN behavioral fear response (ortholog); negative regulation of insulin secretion (ortholog); negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH basal ganglia disease (ortholog); congenital adrenal hyperplasia (ortholog); Dysarthria (ortholog) NW_004955425 23512865 23614326 - 102017255 AGCD01025846;AGCD01025847;AGCD01025848;GBBH01076490;GBBH01076491;XM_013514855;XM_013514856 XP_013370309;XP_013370310 MODEL 8783102 protein-coding Pax3 paired box 3 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); HMG box domain binding (ortholog); INVOLVED IN cell migration (ortholog); cell population proliferation (ortholog); developmental pigmentation (ortholog); ASSOCIATED WITH alveolar rhabdomyosarcoma (ortholog); brain stem glioma (ortholog); congenital diaphragmatic hernia (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955453 11463407 11558001 + 102024873 AGCD01044808;AGCD01044809;AGCD01044810;AGCD01044811;GBBH01144118;XM_005395499;XM_005395500;XM_005395501 XP_005395556;XP_005395557;XP_005395558 MODEL 8820980 protein-coding Enpp2 ectonucleotide pyrophosphatase/phosphodiesterase 2 ENCODES a protein that exhibits alkylglycerophosphoethanolamine phosphodiesterase activity (ortholog); calcium ion binding (ortholog); lysophospholipase activity (ortholog); INVOLVED IN cell chemotaxis (ortholog); cellular response to cadmium ion (ortholog); cellular response to estradiol stimulus (ortholog); ASSOCIATED WITH Birth Weight (ortholog); Cadmium Poisoning (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN extracellular space (ortholog) NW_004955417 25308424 25384307 - 102007119 AGCD01018478;AGCD01018479;GBCE01135046;XM_005381910;XM_005381911;XM_005381912;XM_013512836 XP_005381967;XP_005381968;XP_005381969;XP_013368290 MODEL 8900591 protein-coding Pou6f1 POU class 6 homeobox 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN actin cytoskeleton (ortholog); nuclear body (ortholog); nucleus (ortholog) NW_004955547 1685365 1712028 - 102023958 AGCD01072241;AGCD01072242;GBBH01155724;XM_013508496 XP_013363950 MODEL 8997979 ncrna LOC102010354 uncharacterized LOC102010354 NW_004955468 803292 804816 + 102010354 AGCD01051739;GBDF01089481;XR_263369 MODEL 8886346 ncrna LOC102008474 uncharacterized LOC102008474 NW_004955446 117396 131699 - 102008474 AGCD01039928;AGCD01039929;XR_262359 MODEL 10255193 protein-coding LOC106149886 putative uncharacterized protein FLJ37770 NW_004955456 5455915 5458333 - 106149886 AGCD01046328;GBCB01075526;GBCQ01122406;XM_013520564 XP_013376018 MODEL 8799016 pseudo LOC102006594 tRNA methyltransferase 10 homolog A-like NW_004955425 7417174 7418366 + 102006594 AGCD01025385 MODEL 8939234 protein-coding Lin28b lin-28 homolog B ENCODES a protein that exhibits RNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN miRNA catabolic process (ortholog); negative regulation of pre-miRNA processing (ortholog); negative regulation of primary miRNA processing (ortholog); ASSOCIATED WITH disease of cellular proliferation (ortholog); Neoplastic Cell Transformation (ortholog); neuroblastoma (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955411 30381208 30499678 + 102029161 AGCD01012257;GBDF01020583;XM_013510789 XP_013366243 MODEL 8873605 protein-coding LOC102008080 cytochrome c-like NW_004955413 7665162 7665698 - 102008080 AGCD01013828;GBDF01269962;XM_005378936 XP_005378993 MODEL 8788377 protein-coding Pde9a phosphodiesterase 9A ENCODES a protein that exhibits 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); identical protein binding (ortholog); INVOLVED IN cGMP catabolic process (ortholog); cGMP metabolic process (ortholog); negative regulation of neural precursor cell proliferation (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); cataract 9 multiple types (ortholog); congestive heart failure (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); perikaryon (ortholog) NW_004955407 39090718 39165363 - 102009255 AGCD01007821;AGCD01007822;GBBH01118078;XM_005375809;XM_005375810;XM_013505072;XM_013505077 XP_005375866;XP_005375867;XP_013360526;XP_013360531 MODEL 9007790 protein-coding Btnl10 Butyrophilin-like protein 10 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955581 62183 69040 + 102011066 AGCD01075656;GBBH01076877;XM_005414227 XP_005414284 MODEL 9060666 protein-coding Socs3 suppressor of cytokine signaling 3 ENCODES a protein that exhibits miRNA binding (ortholog); phosphotyrosine residue binding (ortholog); protein tyrosine kinase inhibitor activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); branching involved in labyrinthine layer morphogenesis (ortholog); cell differentiation (ortholog); PARTICIPATES IN erythropoietin signaling pathway; insulin signaling pathway; interleukin-2 signaling pathway; ASSOCIATED WITH atherosclerosis (ortholog); Burns (ortholog); cholangiocarcinoma (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog) NW_004955506 4222455 4225563 + 102007451 AGCD01065328;GBCE01031782;XM_005407378 XP_005407435 MODEL 8700554 pseudo LOC102011543 DCN1-like protein 1 pseudogene NW_004955484 8471459 8472600 - 102011543 AGCD01058384 MODEL 8907091 ncrna LOC102012723 uncharacterized LOC102012723 NW_004955452 3278140 3282430 + 102012723 AGCD01043918;GBDF01194364;XR_262644 MODEL 39133340 snrna U4 U4 spliceosomal RNA 8881083 pseudo LOC102003752 26S protease regulatory subunit 4 pseudogene NW_004955469 9387077 9396448 - 102003752 AGCD01052500;AGCD01052501 MODEL 10134877 ncrna LOC106147054 uncharacterized LOC106147054 NW_004955514 5106802 5110809 - 106147054 AGCD01067147;GBDF01166068;XR_001231761 MODEL 8851084 protein-coding Traf3ip3 TRAF3 interacting protein 3 ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to interferon-alpha (ortholog); cellular response to interferon-beta (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955489 2442319 2468683 - 102022708 AGCD01059871;GBBH01229221;XM_005404533;XM_013504476;XM_013504477;XM_013504478;XM_013504479;XM_013504480 XP_005404590;XP_013359930;XP_013359931;XP_013359932;XP_013359933;XP_013359934 MODEL 8815151 protein-coding Trmt6 tRNA methyltransferase 6 non-catalytic subunit INVOLVED IN mRNA processing (ortholog); ASSOCIATED WITH Huntington's disease-like 1 (ortholog); Inosine Triphosphatase Deficiency (ortholog); pantothenate kinase-associated neurodegeneration (ortholog); FOUND IN tRNA (m1A) methyltransferase complex (ortholog) NW_004955415 16333766 16390112 - 102016916 AGCD01016376;AGCD01016377;AGCD01016378;AGCD01016379;GBCQ01122321;XM_005380851;XM_005380852;XM_013512262 XP_005380908;XP_005380909;XP_013367716 MODEL 9056084 protein-coding Relb RELB proto-oncogene, NF-kB subunit ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); cellular response to osmotic stress (ortholog); circadian regulation of gene expression (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); atopic dermatitis (ortholog); breast cancer (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); cytosol (ortholog) NW_004955555 2060533 2086229 + 102030482 AGCD01073127;AGCD01073128;AGCD01073129;GBCB01060771;GBDK01139724;XM_005412484;XM_013508745 XP_005412541;XP_013364199 MODEL 8960607 ncrna LOC102011937 uncharacterized LOC102011937 NW_004955403 40009315 40019121 + 102011937 AGCD01002656;AGCD01002657;GBDF01192639;XR_259230 MODEL 9001833 protein-coding Pou6f2 POU class 6 homeobox 2 ASSOCIATED WITH autistic disorder (ortholog); hypogonadotropic hypogonadism (ortholog); hypogonadotropic hypogonadism 7 with or without anosmia (ortholog) NW_004955460 4021679 4497538 - 102019574 AGCD01048427;AGCD01048428;AGCD01048429;AGCD01048430;AGCD01048431;AGCD01048432;AGCD01048433;AGCD01048434;AGCD01048435;AGCD01048436;GBDK01408737;XM_005397733 XP_005397790 MODEL 8749713 protein-coding Wdr62 WD repeat domain 62 INVOLVED IN centriole replication (ortholog); cerebral cortex development (ortholog); mitotic spindle organization (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); complex cortical dysplasia with other brain malformations (ortholog); Dwarfism (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cytosol (ortholog) NW_004955468 2504181 2545982 - 102011425 AGCD01051824;AGCD01051825;GBDF01003421;XM_013522434;XM_013522435;XM_013522436;XM_013522437 XP_013377888;XP_013377889;XP_013377890;XP_013377891 MODEL 8794965 protein-coding Traf4 TNF receptor associated factor 4 ENCODES a protein that exhibits identical protein binding (ortholog); protein kinase binding (ortholog); thioesterase binding (ortholog); INVOLVED IN positive regulation of JNK cascade (ortholog); positive regulation of protein kinase activity (ortholog); respiratory gaseous exchange by respiratory system (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); lung adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); fibrillar center (ortholog) NW_004955481 4410906 4417553 - 102021125 AGCD01056936;AGCD01056937;GBBH01119444;GBDJ01179774;XM_005402714 XP_005402771 MODEL 10375525 ncrna LOC106149887 uncharacterized LOC106149887 NW_004955406 10843330 10848776 + 106149887 AGCD01005872;XR_001236344 MODEL 9000861 pseudo LOC102010721 TRMT1-like protein pseudogene NW_004955431 1011390 1013166 - 102010721 AGCD01029888 MODEL 8731622 protein-coding LOC102017582 sulfotransferase 1A1-like NW_004955493 6802353 6802959 - 102017582 AGCD01061141;GBDF01224060;XM_005405345 XP_005405402 MODEL 8804473 protein-coding LOC102021647 major allergen I polypeptide chain 2-like NW_004955468 4158537 4170751 - 102021647 AGCD01051893;GBDF01099579;XM_013522294 XP_013377748 MODEL 8712491 protein-coding Rabac1 Rab acceptor 1 ENCODES a protein that exhibits GTPase binding (ortholog); identical protein binding (ortholog); proline-rich region binding (ortholog); ASSOCIATED WITH Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog); FOUND IN glutamatergic synapse (ortholog); Golgi apparatus (ortholog); membrane (ortholog) NW_004955555 897927 900406 + 102005848 AGCD01073051;GBDF01002277;XM_005412402 XP_005412459 MODEL 8733870 pseudo LOC102019148 60S ribosomal protein L26 pseudogene NW_004955409 36742477 36744893 + 102019148 AGCD01010480 MODEL 8962504 protein-coding Tjp2 tight junction protein 2 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein tyrosine kinase binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN establishment of endothelial intestinal barrier (ortholog); homotypic cell-cell adhesion (ortholog); intestinal absorption (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant nonsyndromic deafness 51 (ortholog); branchiootorenal syndrome (ortholog); FOUND IN bicellular tight junction (ortholog); cell junction (ortholog); cell surface (ortholog) NW_004955434 3781368 3923240 - 102005497 AGCD01032143;AGCD01032144;AGCD01032145;AGCD01032146;AGCD01032147;AGCD01032148;GBCE01075388;GBDJ01089898;XM_005388570;XM_013516340 XP_005388627;XP_013371794 MODEL 9039089 protein-coding Srrm3 serine/arginine repetitive matrix 3 ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955456 14855387 14914315 + 102014214 AGCD01046654;AGCD01046655;AGCD01046656;GBDF01195367;XM_005396897 XP_005396954 MODEL 8859097 protein-coding Slc27a2 solute carrier family 27 member 2 ENCODES a protein that exhibits enzyme binding (ortholog); fatty acid transmembrane transporter activity (ortholog); long-chain fatty acid transmembrane transporter activity (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); fatty acid alpha-oxidation (ortholog); fatty acid beta-oxidation (ortholog); PARTICIPATES IN phytanic acid degradation pathway; Refsum disease pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Fibrosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955409 4077685 4112828 - 102004901 AGCD01009272;AGCD01009273;GBBH01088680;GBCQ01011999;XM_005376675 XP_005376732 MODEL 9002638 protein-coding Pnliprp1 pancreatic lipase related protein 1 ENCODES a protein that exhibits calcium ion binding (ortholog); lipase activity (ortholog); INVOLVED IN pancreas development (ortholog); response to glucocorticoid (ortholog); response to peptide hormone (ortholog); ASSOCIATED WITH prostate cancer (ortholog); syndromic microphthalmia 11 (ortholog); FOUND IN extracellular space (ortholog) NW_004955431 21391166 21406617 + 102023510 AGCD01030496;XM_005387852 XP_005387909 MODEL 8720197 protein-coding Psme3ip1 proteasome activator subunit 3 interacting protein 1 INVOLVED IN negative regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955433 14813688 14843446 - 102023627 AGCD01031729;AGCD01031730;GBCB01023782;XM_005388378;XM_005388379;XM_005388380;XM_005388381;XM_005388383;XM_013516131 XP_005388435;XP_005388436;XP_005388437;XP_005388438;XP_005388440;XP_013371585 MODEL 9024105 protein-coding Plb1 phospholipase B1 ENCODES a protein that exhibits calcium-independent phospholipase A2 activity (ortholog); lysophospholipase activity (ortholog); phospholipase A2 activity (ortholog); INVOLVED IN diacylglycerol catabolic process (ortholog); phosphatidylcholine catabolic process (ortholog); phosphatidylethanolamine catabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; ASSOCIATED WITH prostate cancer (ortholog); rheumatoid arthritis (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN brush border membrane (ortholog) NW_004955469 10370646 10511263 + 102013161 AGCD01052532;AGCD01052533;AGCD01052534;AGCD01052535;GBBH01117765;XM_005400528;XM_005400529;XM_005400530;XM_013522646;XM_013522647;XM_013522648;XM_013522649;XM_013522650;XM_013522651;XM_013522652 XP_005400585;XP_005400586;XP_005400587;XP_013378100;XP_013378101;XP_013378102;XP_013378103;XP_013378104;XP_013378105;XP_013378106 MODEL 8960193 protein-coding LOC102021649 olfactory receptor 52J3-like NW_004955414 20580283 20581221 - 102021649 AGCD01015380;XM_005380062 XP_005380119 MODEL 8749689 protein-coding Rassf3 Ras association domain family member 3 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Familial Prostate Cancer (ortholog); mucopolysaccharidosis type IIID (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955458 11400655 11451796 + 102008825 AGCD01047749;AGCD01047750;GBBH01209336;GBDI01147576;XM_005397534 XP_005397591 MODEL 10159557 protein-coding LOC106147055 uncharacterized LOC106147055 NW_004955514 213278 214707 - 106147055 AGCD01067001;GBDI01016081;XM_013506750 XP_013362204 MODEL 9061078 protein-coding Ndn necdin, MAGE family member ENCODES a protein that exhibits gamma-tubulin binding (ortholog); promoter-specific chromatin binding (ortholog); INVOLVED IN axon extension (ortholog); axonal fasciculation (ortholog); axonogenesis (ortholog); ASSOCIATED WITH Angelman syndrome (ortholog); Animal Mammary Neoplasms (ortholog); autism spectrum disorder (ortholog); FOUND IN cell projection (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955416 31125354 31127010 - 102021759 AGCD01017726;GBDI01326647;XM_005381676 XP_005381733 MODEL 8770946 protein-coding Psme4 proteasome activator subunit 4 ENCODES a protein that exhibits lysine-acetylated histone binding (ortholog); peptidase activator activity (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); proteasomal ubiquitin-independent protein catabolic process (ortholog); ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); visceral heterotaxy (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955441 19586567 19663335 - 102004326 AGCD01037356;AGCD01037357;AGCD01037358;GBCE01134980;GBDJ01020753;XM_013517590 XP_013373044 MODEL 8938501 protein-coding Tshb thyroid stimulating hormone subunit beta INVOLVED IN response to calcium ion (ortholog); response to estrogen (ortholog); response to vitamin A (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); Coma (ortholog); congenital hypothyroidism (ortholog); FOUND IN cytoplasm (ortholog) NW_004955435 18316585 18339935 + 102023390 AGCD01033400;AGCD01033401;AGCD01033402;AGCD01033403;GBDF01010175;XM_005389018;XM_005389019;XM_013516550 XP_005389075;XP_005389076;XP_013372004 MODEL 8893065 ncrna LOC102011940 uncharacterized LOC102011940 NW_004955403 54668718 54673281 + 102011940 AGCD01003101;GBDF01280593;XR_001234182;XR_001234183 MODEL 10248276 ncrna LOC106149888 uncharacterized LOC106149888 NW_004955456 8785350 8791614 - 106149888 AGCD01046502;GBDK01213351;XR_001236345 MODEL 9031098 protein-coding Slc5a2 solute carrier family 5 member 2 ENCODES a protein that exhibits alpha-glucoside transmembrane transporter activity (ortholog); D-glucose transmembrane transporter activity (ortholog); D-glucose:sodium symporter activity (ortholog); INVOLVED IN alpha-glucoside transport (ortholog); D-glucose import across plasma membrane (ortholog); D-glucose transmembrane transport (ortholog); PARTICIPATES IN sodium-glucose cotransporter mediated glucose transport pathway; ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); familial renal glucosuria (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); plasma membrane (ortholog) NW_004955493 8322972 8329886 + 102008866 AGCD01061291;GBDI01039947;XM_005405327;XM_013504877 XP_005405384;XP_013360331 MODEL 9010377 ncrna LOC102011095 uncharacterized LOC102011095 NW_004955463 784664 786273 + 102011095 AGCD01049497;GBDF01014364;XR_263139 MODEL 8775106 ncrna LOC102010723 uncharacterized LOC102010723 NW_004955518 2285051 2292236 + 102010723 AGCD01067775;GBBH01218705;XR_264568 MODEL 8904217 protein-coding Pax4 paired box 4 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN circadian rhythm (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); diabetic ketoacidosis (ortholog); hyperglycemia (ortholog) NW_004955479 8660089 8664463 - 102023260 AGCD01056451;GBDF01199537;XM_005402362 XP_005402419 MODEL 8888259 ncrna LOC102018720 uncharacterized LOC102018720 NW_004955415 16882130 16886583 - 102018720 AGCD01016404;XR_260301 MODEL 39133449 snorna SNORD58 Small nucleolar RNA SNORD58 8898410 protein-coding Enpp3 ectonucleotide pyrophosphatase/phosphodiesterase 3 ENCODES a protein that exhibits bis(5'-adenosyl)-pentaphosphatase activity (ortholog); bis(5'-adenosyl)-triphosphatase activity (ortholog); bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity (ortholog); INVOLVED IN ATP metabolic process (ortholog); basophil activation involved in immune response (ortholog); inorganic diphosphate transport (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Generalized Arterial Calcification of Infancy, 1 (ortholog); hyperargininemia (ortholog); FOUND IN external side of plasma membrane (ortholog); perinuclear region of cytoplasm (ortholog); plasma membrane (ortholog) NW_004955436 12310773 12384815 + 102019951 AGCD01033838;AGCD01033839;AGCD01033840;GBDK01141658;XM_005389205;XM_005389206 XP_005389262;XP_005389263 MODEL 8746211 pseudo LOC102010355 protein tyrosine phosphatase type IVA 1 pseudogene NW_004955414 6560097 6560687 - 102010355 AGCD01014920;XM_005379741;XM_005379742;XM_005379743 MODEL 8930496 protein-coding LOC102005547 breast cancer type 1 susceptibility protein homolog NW_004956027 800 5983 - 102005547 AGCD01078904;GBBH01191619;GBCQ01157973;XM_005415162 XP_005415219 MODEL 8722054 protein-coding Prpf38a pre-mRNA processing factor 38A INVOLVED IN mRNA splicing, via spliceosome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); precatalytic spliceosome (ortholog) NW_004955464 6742200 6761059 - 102021106 AGCD01050038;GBDJ01016093;XM_005398588 XP_005398645 MODEL 8973023 protein-coding Trmt61a tRNA methyltransferase 61A ENCODES a protein that exhibits mRNA (adenine-N1-)-methyltransferase activity (ortholog); INVOLVED IN mRNA processing (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); Cornelia de Lange syndrome (ortholog); immunodeficiency 132A (ortholog); FOUND IN tRNA (m1A) methyltransferase complex (ortholog) NW_004955538 2383666 2393667 + 102010944 AGCD01071124;GBDI01164437;XM_005410781 XP_005410838 MODEL 8709099 protein-coding LOC102006596 3-ketoacyl-CoA thiolase B, peroxisomal NW_004955427 25541841 25552096 - 102006596 AGCD01027545;GBDK01085734;XM_013515208 XP_013370662 MODEL 8778706 pseudo LOC102024433 sodium/myo-inositol cotransporter-like NW_004955409 5273472 5274818 + 102024433 AGCD01009311 MODEL 39133454 snorna SNORD58 Small nucleolar RNA SNORD58 9023126 protein-coding Smg5 SMG5 nonsense mediated mRNA decay factor ENCODES a protein that exhibits histone deacetylase binding (ortholog); protein phosphatase 2A binding (ortholog); telomerase RNA binding (ortholog); INVOLVED IN regulation of dephosphorylation (ortholog); regulation of telomere maintenance (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); nucleus (ortholog) NW_004955545 2386877 2418418 - 102024615 AGCD01071898;AGCD01071899;GBDI01125303;XM_005411667;XM_013508269 XP_005411724;XP_013363723 MODEL 9026785 protein-coding Pdf peptide deformylase, mitochondrial ENCODES a protein that exhibits peptide deformylase activity (ortholog); INVOLVED IN peptidyl-methionine modification (ortholog); positive regulation of cell population proliferation (ortholog); post-translational protein modification (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); congenital disorder of glycosylation (ortholog); FOUND IN mitochondrion (ortholog) NW_004955484 7363861 7366159 + 102005147 AGCD01058329;GBCQ01174818;GBDF01249467;XM_013503933 XP_013359387 MODEL 8846337 ncrna LOC102006975 uncharacterized LOC102006975 NW_004955405 613272 642517 + 102006975 AGCD01004581;AGCD01004582;GBDF01305850;XR_001235174;XR_001235177;XR_259353;XR_259354 MODEL 9044467 protein-coding Rassf4 Ras association domain family member 4 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955546 2277679 2307877 + 102013876 AGCD01072084;GBDF01073498;XM_005411784;XM_005411785 XP_005411841;XP_005411842 MODEL 8784938 protein-coding Pp2d1 protein phosphatase 2C like domain containing 1 ASSOCIATED WITH 3p deletion syndrome (ortholog) NW_004955430 12039391 12070440 - 102004505 AGCD01029473;AGCD01029474;AGCD01029475;AGCD01029476;AGCD01029477;AGCD01029478;AGCD01029479;GBDF01084590;XM_005387461 XP_005387518 MODEL 8780304 protein-coding Pfn2 profilin 2 ENCODES a protein that exhibits actin binding (ortholog); actin monomer binding (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN modification of postsynaptic actin cytoskeleton (ortholog); modulation of chemical synaptic transmission (ortholog); negative regulation of actin filament polymerization (ortholog); ASSOCIATED WITH glycogen storage disease XV (ortholog); hepatocellular carcinoma (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog); presynapse (ortholog) NW_004955448 1199447 1201718 - 102022650 AGCD01041253;GBCC01001537;GBDK01092029;XM_005393006 XP_005393063 MODEL 8837479 ncrna LOC102009608 uncharacterized LOC102009608 NW_004955481 940584 941784 - 102009608 AGCD01056818;GBDF01049337;XR_263757 MODEL 9026347 protein-coding P2ry13 purinergic receptor P2Y13 ENCODES a protein that exhibits G protein-coupled purinergic nucleotide receptor activity (ortholog); ASSOCIATED WITH glycogen storage disease XV (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955448 2434242 2437371 - 102029134 AGCD01041282;GBDK01025262;XM_005393021 XP_005393078 MODEL 8951135 protein-coding Socs4 suppressor of cytokine signaling 4 INVOLVED IN negative regulation of epidermal growth factor-activated receptor activity (ortholog); PARTICIPATES IN Jak-Stat signaling pathway; ASSOCIATED WITH pre-malignant neoplasm (ortholog); Reperfusion Injury (ortholog) NW_004955409 8522540 8539551 - 102027617 AGCD01009420;GBDK01193050;XM_005376754 XP_005376811 MODEL 9004722 protein-coding Rtn4 reticulon 4 ENCODES a protein that exhibits cadherin binding (ortholog); lipid binding (ortholog); metal ion binding (ortholog); INVOLVED IN axonal fasciculation (ortholog); blastocyst formation (ortholog); cardiac epithelial to mesenchymal transition (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Experimental Seizures (ortholog); schizophrenia (ortholog); FOUND IN cell junction (ortholog); cell projection (ortholog); endoplasmic reticulum (ortholog) NW_004955424 28061346 28125838 + 102013429 AGCD01025146;AGCD01025147;GBCQ01010590;XM_013514627 XP_013370081 MODEL 9055830 pseudo LOC102019150 ribosome biogenesis protein BRX1 homolog pseudogene NW_004955411 12654807 12655867 + 102019150 AGCD01011851 MODEL 8918641 pseudo LOC102023359 elongation factor 1-alpha 1-like NW_004955481 10327329 10331933 - 102023359 AGCD01057142 MODEL 8900505 protein-coding Sertm1 serine rich and transmembrane domain containing 1 FOUND IN intracellular membrane-bounded organelle (ortholog) NW_004955431 9363917 9384620 - 102027666 AGCD01030177;GBBH01024568;XM_005387677;XM_005387678;XM_005387679 XP_005387734;XP_005387735;XP_005387736 MODEL 8911392 ncrna LOC102015675 uncharacterized LOC102015675 NW_004955402 1143721 1150487 + 102015675 AGCD01000048;GBBH01111580;XR_001233981;XR_259010 MODEL 10335284 protein-coding LOC106149889 protein cordon-bleu-like NW_004955456 3245763 3271602 + 106149889 AGCD01046268;AGCD01046269;GBDF01040504;XM_013520573 XP_013376027 MODEL 9046295 protein-coding Pigx phosphatidylinositol glycan anchor biosynthesis class X INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); schizophrenia (ortholog); FOUND IN glycosylphosphatidylinositol-mannosyltransferase I complex (ortholog) NW_004955420 12825438 12853658 + 102024121 AGCD01020897;AGCD01020898;AGCD01020899;AGCD01020900;AGCD01020901;GBDF01156715;XM_005383594 XP_005383651 MODEL 8858834 protein-coding LOC102019158 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955413 9642246 9643405 - 102019158 AGCD01013908;XM_013511580 XP_013367034 MODEL 8802364 protein-coding Pnliprp2 pancreatic lipase related protein 2 ENCODES a protein that exhibits calcium ion binding (ortholog); galactolipase activity (ortholog); lipase activity (ortholog); INVOLVED IN cellular defense response (ortholog); galactolipid catabolic process (ortholog); intestinal lipid catabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; ASSOCIATED WITH syndromic microphthalmia 11 (ortholog); FOUND IN extracellular space (ortholog); neuron projection (ortholog); zymogen granule membrane (ortholog) NW_004955431 21425345 21442979 + 102023834 AGCD01030496;GBDJ01313541;XM_005387853 XP_005387910 MODEL 8876625 pseudo LOC102015680 COP9 signalosome complex subunit 8-like NW_004955596 644486 646382 + 102015680 AGCD01076525 MODEL 39132446 snorna SNORA70 Small nucleolar RNA SNORA70 8879469 protein-coding Pax5 paired box 5 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN adult behavior (ortholog); cerebral cortex development (ortholog); embryonic cranial skeleton morphogenesis (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); acute lymphoblastic leukemia (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955419 29395631 29577272 + 102009611 AGCD01020495;AGCD01020496;AGCD01020497;GBDI01055752;XM_005382889;XM_005382890;XM_005382893;XM_005382897 XP_005382946;XP_005382947;XP_005382950;XP_005382954 MODEL 8935774 pseudo LOC102012724 ras-related protein Rab-5A pseudogene NW_004955404 17557735 17563974 - 102012724 AGCD01003594 MODEL 9048784 protein-coding Btnl2 butyrophilin like 2 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN negative regulation of T cell receptor signaling pathway (ortholog); positive regulation of interleukin-2 production (ortholog); positive regulation of T cell proliferation (ortholog); ASSOCIATED WITH berylliosis (ortholog); coronary artery disease (ortholog); Graves' disease (ortholog) NW_004955437 1084330 1101751 - 102018528 AGCD01034189;GBDJ01214554;XM_005389446;XM_005389447;XM_005389448 XP_005389503;XP_005389504;XP_005389505 MODEL 8949343 protein-coding Rimkla ribosomal modification protein rimK like family member A ENCODES a protein that exhibits N-acetyl-L-aspartate-L-glutamate ligase activity (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN cytoplasm (ortholog) NW_004955537 1992660 2024331 + 102009875 AGCD01070910;GBDI01027251;GBDI01027253;XM_005410597 XP_005410654 MODEL 8801405 protein-coding Prpf38b pre-mRNA processing factor 38B ASSOCIATED WITH autistic disorder (ortholog); hereditary spastic paraplegia 63 (ortholog); High Myopia (ortholog) NW_004955435 12162730 12172136 + 102019729 AGCD01033135;GBDJ01081283;XM_005388832 XP_005388889 MODEL 8948764 protein-coding Trmt61b tRNA methyltransferase 61B ENCODES a protein that exhibits mRNA (adenine-N1-)-methyltransferase activity (ortholog); rRNA (adenine) methyltransferase activity (ortholog); tRNA (adenine(58)-N1)-methyltransferase activity (ortholog); INVOLVED IN mitochondrial tRNA processing (ortholog); mRNA processing (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955469 10744814 10771560 - 102014440 AGCD01052549;GBDI01162186;XM_013522617 XP_013378071 MODEL 8717228 protein-coding Psmf1 proteasome inhibitor subunit 1 ENCODES a protein that exhibits proteasome binding (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN negative regulation of proteasomal protein catabolic process (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955596 381080 414307 + 102011068 AGCD01076517;GBDF01007515;XM_005414689 XP_005414746 MODEL 8796326 protein-coding LOC102017584 interferon-induced protein with tetratricopeptide repeats 1B NW_004955425 3606058 3611013 - 102017584 AGCD01025294;GBBH01026311;XM_005385853 XP_005385910 MODEL 151707881 snorna SNORD6 small nucleolar RNA, C/D box 6 9046725 pseudo LOC102011943 allograft inflammatory factor 1 pseudogene NW_004955404 28664142 28664895 + 102011943 AGCD01003957;XM_005374142 MODEL 8940667 protein-coding LOC102003753 olfactory receptor 51L1-like NW_004955414 21288601 21289554 + 102003753 AGCD01015411;XM_005380082 XP_005380139 MODEL 8709588 protein-coding Rabep1 rabaptin, RAB GTPase binding effector protein 1 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN Golgi to plasma membrane transport (ortholog); protein localization to ciliary membrane (ortholog); regulation of postsynaptic neurotransmitter receptor internalization (ortholog); ASSOCIATED WITH fetal akinesia deformation sequence syndrome 4 (ortholog); teratoma (ortholog); FOUND IN cytosol (ortholog); endocytic vesicle (ortholog); endosome (ortholog) NW_004955467 10613671 10748122 + 102026623 AGCD01051578;AGCD01051579;AGCD01051580;AGCD01051581;AGCD01051582;AGCD01051583;GBDF01156135;XM_005399641;XM_005399642 XP_005399698;XP_005399699 MODEL 8858240 protein-coding Slc5a3 solute carrier family 5 member 3 ENCODES a protein that exhibits D-glucose:sodium symporter activity (ortholog); fucose transmembrane transporter activity (ortholog); myo-inositol:sodium symporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); fucose transmembrane transport (ortholog); inositol metabolic process (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); bipolar disorder (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955407 33460238 33511889 + 102025979 AGCD01007701;GBDF01234314;XM_005375699 XP_005375756 MODEL 8837903 protein-coding P2ry14 purinergic receptor P2Y14 INVOLVED IN hematopoietic stem cell homeostasis (ortholog); immune response (ortholog); ASSOCIATED WITH COVID-19 (ortholog); glycogen storage disease XV (ortholog) NW_004955448 2350846 2367633 - 102030017 AGCD01041281;AGCD01041282;GBBH01203423;XM_013518618 XP_013374072 MODEL 9010588 pseudo LOC102021653 protein TEX261 pseudogene NW_004955473 37362 38419 + 102021653 AGCD01053831 MODEL 9043410 ncrna LOC102023360 uncharacterized LOC102023360 NW_004955418 8489605 8491347 + 102023360 AGCD01018923;GBDF01179218;XR_260551 MODEL 8945721 ncrna LOC102011096 uncharacterized LOC102011096 NW_004955463 13120267 13130733 + 102011096 AGCD01049861;GBBH01212613;XR_001236627 MODEL 8962776 protein-coding Srrm4 serine/arginine repetitive matrix 4 ENCODES a protein that exhibits identical protein binding (ortholog); mRNA binding (ortholog); INVOLVED IN cell differentiation (ortholog); mRNA processing (ortholog); nervous system development (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Hearing Disorders (ortholog); vestibular disease (ortholog); FOUND IN nucleus (ortholog) NW_004955455 12318529 12473420 - 102018157 AGCD01046033;AGCD01046034;AGCD01046035;AGCD01046036;AGCD01046037;AGCD01046038;GBDI01308207;XM_013520452;XM_013520453 XP_013375906;XP_013375907 MODEL 8880839 protein-coding Plbd1 phospholipase B domain containing 1 ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); COVID-19 (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN extracellular space (ortholog) NW_004955413 11266589 11326565 - 102026961 AGCD01013956;AGCD01013957;GBCE01152183;XM_013511442 XP_013366896 MODEL 8744166 protein-coding LOC102010724 putative inactive carboxylesterase 4 NW_004955433 13538663 13552591 - 102010724 AGCD01031695;XM_013516106 XP_013371560 MODEL 8913371 ncrna LOC102011553 uncharacterized LOC102011553 NW_004955421 24665699 24694762 - 102011553 AGCD01022221;GBDF01076912;XR_260823 MODEL 8999790 protein-coding Ndnf neuron derived neurotrophic factor ENCODES a protein that exhibits glycosaminoglycan binding (ortholog); heparin binding (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); cellular response to hypoxia (ortholog); ASSOCIATED WITH endometriosis (ortholog); Hypogonadotropic Hypogonadism 25 with Anosmia (ortholog); neurodevelopmental disorder with hearing loss, seizures, and brain abnormalities (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog); extracellular space (ortholog) NW_004955428 19552493 19587712 + 102020824 AGCD01028092;GBDI01383531;XM_005386790 XP_005386847 MODEL 8745483 ncrna LOC102006597 uncharacterized LOC102006597 NW_004955511 5768199 5770593 + 102006597 AGCD01066580;GBCB01022175;XR_001231697 MODEL 8935477 protein-coding Ppa1 inorganic pyrophosphatase 1 ENCODES a protein that exhibits pyrophosphatase activity (ortholog) NW_004955437 21027516 21057712 + 102025173 AGCD01034895;AGCD01034896;GBCC01028794;GBDI01004311;XM_013517122 XP_013372576 MODEL 8884942 protein-coding Rassf5 Ras association domain family member 5 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN lymphocyte proliferation (ortholog); negative regulation of lymphocyte proliferation (ortholog); positive regulation of protein ubiquitination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN nucleus (ortholog) NW_004955406 42086081 42159204 + 102019359 AGCD01006696;AGCD01006697;GBBH01164625;XM_005375394;XM_005375396 XP_005375451;XP_005375453 MODEL 39132023 snorna SNORD61 small nucleolar RNA, C/D box 61 9029381 protein-coding Rtn4ip1 reticulon 4 interacting protein 1 ENCODES a protein that exhibits NADPH dehydrogenase (quinone) activity (ortholog); INVOLVED IN regulation of dendrite development (ortholog); ubiquinone biosynthetic process (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); combined oxidative phosphorylation deficiency 40 (ortholog); Developmental Disabilities (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955411 31902848 31950645 - 102007315 AGCD01012289;GBCQ01127142;XM_005377832 XP_005377889 MODEL 10154685 ncrna LOC106147056 uncharacterized LOC106147056 NW_004955402 18792269 18825888 - 106147056 AGCD01000540;GBDI01034192;XR_001231763;XR_001231772;XR_001231775;XR_001231782;XR_001231786;XR_001231793;XR_001231799 MODEL 9011967 protein-coding Slc5a4 solute carrier family 5 member 4 ENCODES a protein that exhibits D-glucose:sodium symporter activity (ortholog); low-affinity D-glucose:sodium symporter activity (ortholog); proton transmembrane transporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); proton transmembrane transport (ortholog); ASSOCIATED WITH glucose-galactose malabsorption (ortholog); muscular dystrophy-dystroglycanopathy type B6 (ortholog) NW_004955455 6250161 6308688 - 102018565 AGCD01045782;AGCD01045783;AGCD01045784;AGCD01045785;GBDI01245806;XM_013520298 XP_013375752 MODEL 8986430 protein-coding Wdr64 WD repeat domain 64 ASSOCIATED WITH fumarase deficiency (ortholog); gastrointestinal stromal tumor (ortholog); Hereditary Leiomyomatosis and Renal Cell Cancer (ortholog) NW_004955406 10317674 10439077 - 102017950 AGCD01005855;AGCD01005856;AGCD01005857;AGCD01005858;AGCD01005859;AGCD01005860;AGCD01005861;GBDF01159246;GBDF01159247;XM_013520508 XP_013375962 MODEL 39133341 snrna U4 U4 spliceosomal RNA 39132455 snorna SNORA70 Small nucleolar RNA SNORA70 8775166 ncrna LOC102012730 uncharacterized LOC102012730 NW_004955407 18730128 18738547 + 102012730 AGCD01007275;GBDF01261213;XR_259575 MODEL 9046707 protein-coding Btnl9 butyrophilin like 9 NW_004955530 263915 284368 - 102011359 AGCD01069836;AGCD01069837;AGCD01069838;GBDI01324980;XM_005410120;XM_013507547 XP_005410177;XP_013363001 MODEL 8982899 protein-coding Tjp3 tight junction protein 3 INVOLVED IN regulation of G1/S transition of mitotic cell cycle (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autism spectrum disorder (ortholog); COVID-19 (ortholog); FOUND IN apical plasma membrane (ortholog); bicellular tight junction (ortholog); cell junction (ortholog) NW_004955495 5620817 5647211 + 102007672 AGCD01062015;AGCD01062016;AGCD01062017;GBBH01087934;XM_005405882;XM_005405883;XM_013505215 XP_005405939;XP_005405940;XP_013360669 MODEL 9025702 protein-coding Pdgfa platelet derived growth factor subunit A ENCODES a protein that exhibits collagen binding (ortholog); growth factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); angiogenesis (ortholog); animal organ morphogenesis (ortholog); PARTICIPATES IN ceramide signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Animal Mammary Neoplasms (ortholog); Brain Injuries (ortholog); FOUND IN cell surface (ortholog); extracellular space (ortholog); microvillus (ortholog) NW_004955460 8328400 8346755 - 102008921 AGCD01048514;AGCD01048515;GBDF01074297;XM_005397774;XM_005397776;XM_013521277;XM_013521278;XM_013521280;XM_013521281;XM_013521282 XP_005397831;XP_005397833;XP_013376731;XP_013376732;XP_013376734;XP_013376735;XP_013376736 MODEL 8930218 protein-coding Slc27a3 solute carrier family 27 member 3 ENCODES a protein that exhibits fatty-acyl-CoA synthase activity (ortholog); long-chain fatty acid-CoA ligase activity (ortholog); very long-chain fatty acid-CoA ligase activity (ortholog); INVOLVED IN fatty acid transport (ortholog); long-chain fatty acid metabolic process (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN endoplasmic reticulum (ortholog); mitochondrion (ortholog) NW_004955545 395938 400324 + 102021178 AGCD01071790;AGCD01071791;GBCQ01093343;GBDJ01125476;XM_013508224 XP_013363678 MODEL 8823610 protein-coding Pfn3 profilin 3 ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog) NW_004955408 29642186 29642993 - 102025877 AGCD01008765;GBDF01044887;XM_005376434 XP_005376491 MODEL 8725356 protein-coding LOC102009610 dnaJ homolog subfamily C member 25 NW_004955419 15664786 15684889 - 102009610 AGCD01020086;AGCD01020087;GBBH01057437;GBDF01120670;XM_013513302 XP_013368756 MODEL 39131567 protein-coding SERTM2 serine rich and transmembrane domain containing 2 8836070 protein-coding Ndor1 NADPH dependent diflavin oxidoreductase 1 ENCODES a protein that exhibits electron transfer activity (ortholog); FAD binding (ortholog); FMN binding (ortholog); INVOLVED IN electron transport chain (ortholog); PARTICIPATES IN cytosolic iron-sulfur cluster protein assembly pathway; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intermediate filament cytoskeleton (ortholog) NW_004955513 5208040 5216618 + 102007685 AGCD01066962;GBCQ01070837;XM_005408593;XM_005408594;XM_005408596;XM_005408597;XM_013506595;XM_013506596 XP_005408650;XP_005408651;XP_005408653;XP_005408654;XP_013362049;XP_013362050 MODEL 8734927 pseudo LOC102008477 40S ribosomal protein S24 pseudogene NW_004955447 14840245 14840673 - 102008477 AGCD01041022 MODEL 8944017 ncrna LOC102011945 uncharacterized LOC102011945 NW_004955405 15509552 15549105 + 102011945 AGCD01004947;AGCD01004948;GBDF01052663;XR_259378;XR_259379 MODEL 9019987 protein-coding Socs5 suppressor of cytokine signaling 5 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); receptor tyrosine kinase binding (ortholog); INVOLVED IN cellular response to low-density lipoprotein particle stimulus (ortholog); cytokine-mediated signaling pathway (ortholog); epidermal growth factor receptor signaling pathway (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; Jak-Stat signaling pathway; ASSOCIATED WITH Lynch syndrome (ortholog) NW_004955441 13593342 13657389 + 102014611 AGCD01037155;AGCD01037156;AGCD01037157;GBCB01059474;GBDJ01349288;XM_005390984 XP_005391041 MODEL 8790126 protein-coding Lin37 lin-37 DREAM MuvB core complex component ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN G0 to G1 transition (ortholog); gene expression (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); hereditary spastic paraplegia 75 (ortholog) NW_004955468 2799641 2803880 - 102021431 AGCD01051838;GBBH01119468;XM_005399965;XM_005399966;XM_005399968;XM_013522390;XM_013522391;XM_013522392 XP_005400022;XP_005400023;XP_005400025;XP_013377844;XP_013377845;XP_013377846 MODEL 9007008 pseudo LOC102008087 Y+L amino acid transporter 2 pseudogene NW_004955472 118385 120399 + 102008087 AGCD01053315 MODEL 8961019 protein-coding LOC102003754 olfactory receptor 2AG1-like NW_004955414 22578726 22579673 + 102003754 AGCD01015464;XM_005380177 XP_005380234 MODEL 8772730 protein-coding Relch RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing INVOLVED IN intracellular cholesterol transport (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); multiple congenital anomalies-hypotonia-seizures syndrome 1 (ortholog); FOUND IN recycling endosome (ortholog); trans-Golgi network (ortholog) NW_004955402 46114835 46226330 + 102019972 AGCD01001151;AGCD01001152;AGCD01001153;AGCD01001154;GBDK01224883;XM_005373018;XM_005373019;XM_013511190;XM_013511192;XM_013511197;XR_001232916 XP_005373075;XP_005373076;XP_013366644;XP_013366646;XP_013366651 MODEL 8713337 pseudo LOC102011101 HAUS augmin-like complex subunit 6 pseudogene NW_004955467 12349080 12357812 + 102011101 AGCD01051631;XR_263364 MODEL 8937117 protein-coding LOC102019162 protein FAM205A NW_004955472 1398923 1404948 + 102019162 AGCD01053390;GBDF01003693;XM_005401041 XP_005401098 MODEL 39132796 snorna SNORD62 Small nucleolar RNA SNORD62 9018123 protein-coding Srrm5 serine/arginine repetitive matrix 5 ASSOCIATED WITH ethylmalonic encephalopathy (ortholog); schizophrenia (ortholog) NW_004955555 1347060 1349370 + 102013882 AGCD01073074;GBDF01002869;XM_005412528 XP_005412585 MODEL 9035741 protein-coding Tshr thyroid stimulating hormone receptor ENCODES a protein that exhibits protein-containing complex binding (ortholog); signaling receptor activity (ortholog); thyroid-stimulating hormone receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adult locomotory behavior (ortholog); B cell differentiation (ortholog); ASSOCIATED WITH adenoma (ortholog); Adrenal Gland Neoplasms (ortholog); autoimmune thyroiditis (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog); receptor complex (ortholog) NW_004955438 4601765 4758922 + 102024276 AGCD01035046;AGCD01035047;AGCD01035048;GBDF01190268;XM_005390231;XM_005390232;XM_005390233;XM_013517232;XM_013517233 XP_005390288;XP_005390289;XP_005390290;XP_013372686;XP_013372687 MODEL 9032369 protein-coding LOC102010725 early placenta insulin-like peptide NW_004955434 9375953 9378354 - 102010725 AGCD01032299;GBDJ01223750;XM_005388747 XP_005388804 MODEL 8819417 protein-coding Smg6 SMG6 nonsense mediated mRNA decay factor ENCODES a protein that exhibits DNA polymerase binding (ortholog); ribonucleoprotein complex binding (ortholog); RNA binding (ortholog); INVOLVED IN negative regulation of telomere capping (ortholog); nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); regulation of telomere maintenance (ortholog); ASSOCIATED WITH corpus callosum agenesis-abnormal genitalia syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN ciliary basal body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955481 940041 1177998 + 102008849 AGCD01056818;AGCD01056819;AGCD01056820;AGCD01056821;AGCD01056822;AGCD01056823;AGCD01056824;AGCD01056825;AGCD01056826;GBCE01099102;XM_005402585;XM_005402586;XM_005402587;XM_013503361;XM_013503362 XP_005402642;XP_005402643;XP_005402644;XP_013358815;XP_013358816 MODEL 39133342 snrna U4 U4 spliceosomal RNA 8834591 protein-coding Slc5a5 solute carrier family 5 member 5 ENCODES a protein that exhibits iodide transmembrane transporter activity (ortholog); monoatomic anion:sodium symporter activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to forskolin (ortholog); cellular response to gonadotropin stimulus (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH amenorrhea (ortholog); Breast Neoplasms (ortholog); cholangiocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955524 3372539 3380758 - 102012470 AGCD01068890;AGCD01068891;GBDI01013617;GBDI01016743;XM_013507280 XP_013362734 MODEL 8762999 protein-coding Trmt9b tRNA methyltransferase 9B (putative) ENCODES a protein that exhibits tRNA methyltransferase activity (ortholog) NW_004955463 4035145 4096996 - 102015816 AGCD01049600;AGCD01049601;GBDJ01298592;XM_013521538;XM_013521539;XM_013521540;XM_013521541;XM_013521542;XM_013521543;XM_013521544;XM_013521545;XM_013521546;XM_013521547;XM_013521548;XM_013521549;XM_013521550;XM_013521551;XM_013521552;XM_013521553;XM_013521554;XM_013521555;XM_013521556;XM_013521557;XM_013521558;XM_013521559 XP_013376992;XP_013376993;XP_013376994;XP_013376995;XP_013376996;XP_013376997;XP_013376998;XP_013376999;XP_013377000;XP_013377001;XP_013377002;XP_013377003;XP_013377004;XP_013377005;XP_013377006;XP_013377007;XP_013377008;XP_013377009;XP_013377010;XP_013377011;XP_013377012;XP_013377013 MODEL 10175465 ncrna LOC106149890 uncharacterized LOC106149890 NW_004955456 3238535 3251789 - 106149890 AGCD01046268;GBDK01096272;XR_001236346;XR_001236347 MODEL 8737027 protein-coding Pdgfb platelet derived growth factor subunit B ENCODES a protein that exhibits chemoattractant activity (ortholog); collagen binding (ortholog); growth factor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); blood vessel development (ortholog); blood vessel morphogenesis (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); AIDS Dementia Complex (ortholog); Alzheimer's disease (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955413 25150702 25166987 - 102027508 AGCD01014397;GBCE01152520;GBDK01085597;XM_005379284 XP_005379341 MODEL 8926075 protein-coding LOC102005548 cytochrome P450 2D6-like NW_004957079 5 1733 + 102005548 AGCD01080475;GBDI01036375;XM_013510243 XP_013365697 MODEL 8914915 protein-coding Rabep2 rabaptin, RAB GTPase binding effector protein 2 INVOLVED IN regulation of cilium assembly (ortholog); ASSOCIATED WITH Brody myopathy (ortholog); chromosome 16p11.2 deletion syndrome, 220-kb (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cytosol (ortholog) NW_004955493 6548951 6560039 + 102014061 AGCD01061119;GBDI01005384;XM_005405161 XP_005405218 MODEL 8838619 ncrna LOC102023362 uncharacterized LOC102023362 NW_004955419 14127307 14131078 + 102023362 AGCD01020012;GBDF01288602;XR_260629 MODEL 9011189 protein-coding Rassf6 Ras association domain family member 6 INVOLVED IN positive regulation of apoptotic process (ortholog); regulation of apoptotic process (ortholog) NW_004955657 49115 59237 - 102014850 AGCD01077855;AGCD01077856;AGCD01077857;GBDI01028020;XM_005415062;XM_005415063 XP_005415119;XP_005415120 MODEL 8960611 ncrna LOC102011946 uncharacterized LOC102011946 NW_004955452 12789670 12791076 - 102011946 AGCD01044366;GBDF01032085;XR_262681 MODEL 8978865 pseudo LOC102024436 40S ribosomal protein S25 pseudogene NW_004955463 6739320 6740084 + 102024436 AGCD01049695 MODEL 9047488 protein-coding Traf5 TNF receptor associated factor 5 ENCODES a protein that exhibits identical protein binding (ortholog); thioesterase binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN CD40 signaling pathway (ortholog); interleukin-17-mediated signaling pathway (ortholog); mRNA stabilization (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN CD40 receptor complex (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955489 935601 995162 - 102014056 AGCD01059824;GBCB01012256;XM_005404503;XR_001231193;XR_001231194 XP_005404560 MODEL 8751301 protein-coding LOC102021665 complement C5 NW_004955419 6999448 7096842 + 102021665 AGCD01019868;AGCD01019869;AGCD01019870;AGCD01019871;AGCD01019872;AGCD01019873;GBDK01083338;XM_005382580 XP_005382637 MODEL 9007062 ncrna LOC102011112 uncharacterized LOC102011112 NW_004955415 26765225 26765881 - 102011112 AGCD01016604;XR_260318 MODEL 10301189 protein-coding LOC106147057 uncharacterized LOC106147057 NW_004955514 1082367 1083540 - 106147057 AGCD01067036;GBDF01251435;XM_013506766 XP_013362220 MODEL 8892948 protein-coding LOC102006979 keratin-associated protein 20-2-like NW_004955407 30156701 30156859 + 102006979 AGCD01007628;XM_005375640 XP_005375697 MODEL 8812226 protein-coding LOC102019163 uncharacterized LOC102019163 NW_004955414 24573632 24634114 + 102019163 AGCD01015548;AGCD01015549;AGCD01015550;XM_005380524 XP_005380581 MODEL 39132799 snorna SNORD62 Small nucleolar RNA SNORD62 8750355 protein-coding Rell1 RELT like 1 INVOLVED IN positive regulation of p38MAPK cascade (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN microtubule cytoskeleton (ortholog); plasma membrane (ortholog) NW_004955443 9461570 9526986 + 102009997 AGCD01038357;GBCE01152742;XM_005392010;XM_013518114 XP_005392067;XP_013373568 MODEL 8993754 protein-coding Rimklb ribosomal modification protein rimK like family member B ENCODES a protein that exhibits citrate-L-glutamate ligase activity (ortholog); N-acetyl-L-aspartate-L-glutamate ligase activity (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); Klippel-Feil syndrome 3 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955413 6298833 6362812 - 102024326 AGCD01013724;AGCD01013725;AGCD01013726;AGCD01013727;AGCD01013728;AGCD01013729;AGCD01013730;GBDI01255536;XM_013511616;XM_013511617;XR_001233028;XR_001233029;XR_001233030 XP_013367070;XP_013367071 MODEL 8780981 protein-coding Psmg1 proteasome assembly chaperone 1 ENCODES a protein that exhibits molecular adaptor activity (ortholog); proteasome binding (ortholog); INVOLVED IN cerebellar granule cell precursor proliferation (ortholog); chaperone-mediated protein complex assembly (ortholog); proteasome core complex assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); ulcerative colitis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955407 37993657 38002986 - 102021520 AGCD01007792;GBDI01180160;XM_005375763;XM_005375764 XP_005375820;XP_005375821 MODEL 39132467 snorna SNORA70 Small nucleolar RNA SNORA70 9041316 ncrna LOC102018722 uncharacterized LOC102018722 NW_004955476 7403453 7410048 + 102018722 AGCD01055353;GBDF01016286;XR_263625 MODEL 8717962 ncrna LOC102017591 uncharacterized LOC102017591 NW_004955510 6375997 6377249 - 102017591 AGCD01066306;GBDF01087880;XR_264412 MODEL 8910506 gene LOC102012734 Ig lambda-2 chain V region-like NW_004955455 6800743 6801214 + 102012734 AGCD01045813 MODEL 10190939 protein-coding LOC102010356 uncharacterized LOC102010356 NW_004955470 374789 391272 - 102010356 AGCD01052609;GBCE01002380;XM_013522686 XP_013378140 MODEL 8821678 protein-coding Enpp4 ectonucleotide pyrophosphatase/phosphodiesterase 4 ENCODES a protein that exhibits bis(5'-adenosyl)-triphosphatase activity (ortholog); INVOLVED IN positive regulation of blood coagulation (ortholog); purine ribonucleoside catabolic process (ortholog) NW_004955437 11169778 11187544 + 102029793 AGCD01034569;GBDF01046277;XM_005389840;XM_005389841;XM_005389842;XM_005389843;XM_005389845;XM_013516974 XP_005389897;XP_005389898;XP_005389899;XP_005389900;XP_005389902;XP_013372428 MODEL 8942710 protein-coding Pigy phosphatidylinositol glycan anchor biosynthesis class Y ENCODES a protein that exhibits phosphatidylinositol N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); hyperphosphatasia with impaired intellectual development syndrome (ortholog); hyperphosphatasia with impaired intellectual development syndrome 6 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog); plasma membrane (ortholog) NW_004955474 11945871 11946419 + 102024220 AGCD01054643;XM_005401449 XP_005401506 MODEL 8768533 protein-coding P2ry2 purinergic receptor P2Y2 ENCODES a protein that exhibits A1 adenosine receptor binding (ortholog); ATP binding (ortholog); G protein-coupled UTP receptor activity (ortholog); INVOLVED IN blood vessel diameter maintenance (ortholog); cellular response to interleukin-1 (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); Dehydration (ortholog); impotence (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); early endosome (ortholog) NW_004955414 18248082 18271047 - 102017763 AGCD01015274;AGCD01015275;AGCD01015276;GBBH01093715;XM_005379957;XM_005379958;XM_005379960;XM_005379961;XM_013511812;XM_013511813;XM_013511814;XM_013511815;XM_013511816;XR_001233104 XP_005380014;XP_005380015;XP_005380017;XP_005380018;XP_013367266;XP_013367267;XP_013367268;XP_013367269;XP_013367270 MODEL 8967392 protein-coding LOC102008482 hornerin NW_004955589 190459 199095 + 102008482 AGCD01076158;AGCD01076159;GBCC01001512;XM_005414528;XM_005414529;XM_005414531;XM_013509953;XM_013509954 XP_005414585;XP_005414586;XP_005414588;XP_013365407;XP_013365408 MODEL 8764564 protein-coding Rtn4r reticulon 4 receptor ENCODES a protein that exhibits chondroitin sulfate binding (ortholog); ganglioside GM1 binding (ortholog); ganglioside GT1b binding (ortholog); INVOLVED IN axonogenesis (ortholog); cell surface receptor signaling pathway (ortholog); corpus callosum development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN axonal growth cone (ortholog); cell surface (ortholog); dendritic shaft (ortholog) NW_004955442 17866508 17891803 + 102021054 AGCD01037988;GBCE01016565;XM_005391722 XP_005391779 MODEL 8740620 protein-coding Lin52 lin-52 DREAM MuvB core complex component ASSOCIATED WITH intellectual disability (ortholog); primary ciliary dyskinesia 16 (ortholog) NW_004955523 1250551 1344434 - 102022007 AGCD01068512;AGCD01068513;AGCD01068514;GBCB01055923;XM_005409403;XM_005409404;XM_005409405 XP_005409460;XP_005409461;XP_005409462 MODEL 10218798 pseudo LOC106149891 cysteine and histidine-rich domain-containing protein 1-like NW_004955456 13702594 13703373 - 106149891 AGCD01046612 MODEL 9060940 protein-coding Plbd2 phospholipase B domain containing 2 FOUND IN lysosome (ortholog) NW_004955482 9630300 9643212 + 102017339 AGCD01057577;GBBH01031135;GBDK01000319;XM_013503595 XP_013359049 MODEL 9040908 protein-coding Socs6 suppressor of cytokine signaling 6 INVOLVED IN intracellular glucose homeostasis (ortholog); negative regulation of T cell activation (ortholog); proteasomal protein catabolic process (ortholog); PARTICIPATES IN insulin signaling pathway; Jak-Stat signaling pathway; ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN immunological synapse (ortholog) NW_004955402 53847859 53876245 + 102005983 AGCD01001374;AGCD01001375;AGCD01001376;AGCD01001377;GBCB01073847;XM_005373056;XM_005373057 XP_005373113;XP_005373114 MODEL 8881578 protein-coding Pax6 paired box 6 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); co-SMAD binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); astrocyte differentiation (ortholog); axon guidance (ortholog); ASSOCIATED WITH aniridia (ortholog); aniridia 1 (ortholog); Anophthalmia (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955476 10058979 10074668 - 102024457 AGCD01055407;GBBH01094369;XM_005401770;XM_013502938;XM_013502939 XP_005401827;XP_013358392;XP_013358393 MODEL 8985295 protein-coding Wdr7 WD repeat domain 7 INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); FOUND IN synaptic vesicle (ortholog) NW_004955402 41071895 41437717 + 102004341 AGCD01001008;AGCD01001009;AGCD01001010;AGCD01001011;AGCD01001012;AGCD01001013;AGCD01001014;AGCD01001015;GBDF01080343;XM_013510978;XM_013510979 XP_013366432;XP_013366433 MODEL 9010870 protein-coding LOC102006598 olfactory receptor 5B2-like NW_004955511 3228174 3232952 - 102006598 AGCD01066450;XM_013506387 XP_013361841 MODEL 8882824 protein-coding Prpf39 pre-mRNA processing factor 39 ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Fanconi anemia (ortholog) NW_004955409 16824638 16845778 - 102008194 AGCD01009744;GBDF01060020;XM_005376861;XM_005376863;XM_005376864;XM_005376865;XM_005376866;XM_013510344 XP_005376918;XP_005376920;XP_005376921;XP_005376922;XP_005376923;XP_013365798 MODEL 8934066 pseudo LOC102010726 radixin pseudogene NW_004955435 6868094 6869629 - 102010726 AGCD01032938 MODEL 8725229 protein-coding Slc5a7 solute carrier family 5 member 7 ENCODES a protein that exhibits choline binding (ortholog); choline transmembrane transporter activity (ortholog); choline:sodium symporter activity (ortholog); INVOLVED IN acetylcholine biosynthetic process (ortholog); choline transport (ortholog); in utero embryonic development (ortholog); PARTICIPATES IN acetylcholine signaling pathway via muscarinic acetylcholine receptor; acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH asthma (ortholog); autosomal dominant distal hereditary motor neuronopathy 7 (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); clathrin-coated endocytic vesicle (ortholog) NW_004955470 11673491 11694404 + 102006334 AGCD01052897;GBBH01014798;XM_005400796 XP_005400853 MODEL 8768814 protein-coding Ppa2 inorganic pyrophosphatase 2 ENCODES a protein that exhibits inorganic diphosphate phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN diphosphate metabolic process (ortholog); regulation of mitochondrial membrane potential (ortholog); ASSOCIATED WITH Alcohol-Induced Sudden Cardiac Failure (ortholog); genetic disease (ortholog); Sudden Cardiac Failure, Infantile (ortholog); FOUND IN mitochondrion (ortholog); synapse (ortholog) NW_004955496 3765038 3831312 + 102029529 AGCD01062299;AGCD01062300;AGCD01062301;GBBH01119516;XM_005406284 XP_005406341 MODEL 8961898 protein-coding Srrt serrate, RNA effector molecule ENCODES a protein that exhibits DNA binding (ortholog); mRNA cap binding complex binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN neuronal stem cell population maintenance (ortholog); positive regulation of neurogenesis (ortholog); primary miRNA processing (ortholog); ASSOCIATED WITH glioblastoma (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); protein-containing complex (ortholog) NW_004955573 86975 101538 - 102010646 AGCD01074961;GBBH01060953;XM_005413680;XM_005413681;XM_013509452 XP_005413737;XP_005413738;XP_013364906 MODEL 39132792 snorna SNORD62 Small nucleolar RNA SNORD62 8825029 protein-coding Slc27a4 solute carrier family 27 member 4 ENCODES a protein that exhibits long-chain fatty acid transmembrane transporter activity (ortholog); long-chain fatty acid-CoA ligase activity (ortholog); oleoyl-CoA ligase activity (ortholog); INVOLVED IN establishment of localization in cell (ortholog); fatty acid metabolic process (ortholog); fatty acid transport (ortholog); ASSOCIATED WITH autosomal recessive congenital ichthyosis (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); FOUND IN brush border membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955570 853856 866383 + 102024731 AGCD01074771;GBCQ01036852;GBDJ01090430;XM_005413538 XP_005413595 MODEL 9046128 protein-coding Sesn1 sestrin 1 ENCODES a protein that exhibits L-leucine binding (ortholog); INVOLVED IN cellular oxidant detoxification (ortholog); cellular response to amino acid starvation (ortholog); cellular response to amino acid stimulus (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); FOUND IN cytoplasm (ortholog); fibrillar center (ortholog); GATOR2 complex (ortholog) NW_004955411 34033986 34051171 - 102015489 AGCD01012378;AGCD01012379;GBCB01023930;GBDF01121431;XM_013510807 XP_013366261 MODEL 8742575 protein-coding Pnma2 PNMA family member 2 NW_004955403 49183280 49184855 - 102027806 AGCD01002935;XM_005415298 XP_005415355 MODEL 8836104 ncrna LOC102008088 uncharacterized LOC102008088 NW_004955415 25886988 25916316 - 102008088 AGCD01016587;GBBH01171947;XR_260315 MODEL 8952215 pseudo LOC102015681 putative 60S ribosomal protein L13a protein RPL13AP3 NW_004955402 7292136 7295989 - 102015681 AGCD01000170 MODEL 9031136 protein-coding LOC102010358 olfactory receptor 52H1-like NW_004955414 21638413 21639375 + 102010358 AGCD01015425;XM_005380101 XP_005380158 MODEL 9003751 protein-coding LOC102003755 uncharacterized LOC102003755 NW_004955470 10483806 10485953 - 102003755 AGCD01052870;GBDF01294395;XM_005400841 XP_005400898 MODEL 9050014 ncrna LOC102023363 uncharacterized LOC102023363 NW_004955420 10881689 10909589 + 102023363 AGCD01020795;AGCD01020796;GBDF01306314;XR_260698 MODEL 8882122 protein-coding Rabepk Rab9 effector protein with kelch motifs ASSOCIATED WITH High Myopia (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog) NW_004955419 3061838 3096693 - 102017020 AGCD01019701;AGCD01019702;AGCD01019703;AGCD01019704;AGCD01019705;GBDJ01282527;XM_005382469;XM_005382470;XM_005382473;XM_013513179 XP_005382526;XP_005382527;XP_005382530;XP_013368633 MODEL 8737531 protein-coding LOC102008486 vomeronasal type-1 receptor 4-like NW_004955603 3670 4617 + 102008486 AGCD01076801;XM_005414840 XP_005414897 MODEL 8785946 protein-coding LOC102021666 uncharacterized LOC102021666 NW_004955419 27619572 27626303 + 102021666 AGCD01020444;GBCE01016841;XM_013513108 XP_013368562 MODEL 9064832 protein-coding P2ry4 pyrimidinergic receptor P2Y4 ENCODES a protein that exhibits ATP binding (ortholog); G protein-coupled UTP receptor activity (ortholog); INVOLVED IN cellular response to prostaglandin E stimulus (ortholog); regulation of presynaptic cytosolic calcium ion concentration (ortholog); regulation of synaptic vesicle exocytosis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); epilepsy (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); glutamatergic synapse (ortholog) NW_004955475 9794538 9802055 - 102021654 AGCD01055075;GBCC01043486;XM_005401615;XM_005401616;XM_013502797 XP_005401672;XP_005401673;XP_013358251 MODEL 9002445 protein-coding Tshz1 teashirt zinc finger homeobox 1 INVOLVED IN anterior/posterior pattern specification (ortholog); middle ear morphogenesis (ortholog); soft palate development (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); Congenital Aural Atresia (ortholog); Familial Prostate Cancer (ortholog) NW_004955402 58695150 58717926 + 102015164 AGCD01001539;GBDK01397330;XM_013511962 XP_013367416 MODEL 10128276 protein-coding LOC106149892 uncharacterized LOC106149892 NW_004955456 13688948 13689350 + 106149892 AGCD01046610;GBCE01022193;XM_013520620 XP_013376074 MODEL 8870865 protein-coding Btrc beta-transducin repeat containing E3 ubiquitin protein ligase ENCODES a protein that exhibits beta-catenin binding (ortholog); protein phosphorylated amino acid binding (ortholog); ubiquitin ligase activator activity (ortholog); INVOLVED IN branching involved in mammary gland duct morphogenesis (ortholog); mammary gland epithelial cell proliferation (ortholog); negative regulation of T cell receptor signaling pathway (ortholog); PARTICIPATES IN Hedgehog signaling pathway; nuclear factor kappa B signaling pathway; nuclear factor, erythroid 2 like 2 signaling pathway; ASSOCIATED WITH HYPOPLASTIC FEMURS AND PELVIS (ortholog); split hand-foot malformation (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); SCF ubiquitin ligase complex (ortholog) NW_004955485 8724375 8846647 - 102026749 AGCD01058727;AGCD01058728;GBCB01021435;XM_005403874;XM_005403876;XM_005403877;XM_013504108;XM_013504109 XP_005403931;XP_005403933;XP_005403934;XP_013359562;XP_013359563 MODEL 8805716 protein-coding Tk1 thymidine kinase 1 ENCODES a protein that exhibits identical protein binding (ortholog); thymidine kinase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN digestive tract development (ortholog); DNA synthesis involved in mitotic DNA replication (ortholog); fetal process involved in parturition (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; mitochondrial neurogastrointestinal encephalopathy syndrome pathway; ASSOCIATED WITH Animal Disease Models (ortholog); breast cancer (ortholog); cervix carcinoma (ortholog) NW_004955506 4379830 4390729 + 102008876 AGCD01065337;GBDK01117779;XM_005407382;XM_005407383 XP_005407439;XP_005407440 MODEL 8707558 protein-coding Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 INVOLVED IN mitophagy (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955426 26026284 26040311 + 102027428 AGCD01026735;GBCE01122894;XM_005386249;XM_005386250;XM_005386251;XM_013514996;XM_013514997 XP_005386306;XP_005386307;XP_005386308;XP_013370450;XP_013370451 MODEL 8730162 pseudo LOC102009612 zinc finger matrin-type protein 2 pseudogene NW_004955485 7634595 7636928 - 102009612 AGCD01058668 MODEL 8768107 protein-coding Rabgap1 RAB GTPase activating protein 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN regulation of cilium assembly (ortholog); FOUND IN cytosol (ortholog) NW_004955419 4869799 5031430 - 102028752 AGCD01019777;AGCD01019778;AGCD01019779;AGCD01019780;GBDF01126192;XM_005382507;XM_005382508;XM_005382509;XM_005382510;XM_013513144;XM_013513145;XM_013513146 XP_005382564;XP_005382565;XP_005382566;XP_005382567;XP_013368598;XP_013368599;XP_013368600 MODEL 8961118 protein-coding Ndp norrin cystine knot growth factor NDP ENCODES a protein that exhibits cytokine activity (ortholog); frizzled binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN action potential (ortholog); angiogenesis (ortholog); blood vessel remodeling (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH autistic disorder (ortholog); Brunner syndrome (ortholog); Coats disease (ortholog); FOUND IN cell surface (ortholog); collagen-containing extracellular matrix (ortholog); extracellular space (ortholog) NW_004955516 4218703 4244774 + 102006065 AGCD01067519;GBCE01165457;XM_005408998 XP_005409055 MODEL 8976668 protein-coding Enpp5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 ENCODES a protein that exhibits NAD+ diphosphatase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN cell communication (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Prostatic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955437 11195846 11204000 - 102003483 AGCD01034569;GBDF01153945;XM_005389846 XP_005389903 MODEL 8836432 protein-coding Pvalb parvalbumin ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cochlea development (ortholog); excitatory chemical synaptic transmission (ortholog); gene expression (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); bipolar disorder (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); FOUND IN axon (ortholog); cuticular plate (ortholog); cytoplasm (ortholog) NW_004955413 23329467 23345487 - 102022484 AGCD01014329;GBCB01002123;XM_005379169 XP_005379226 MODEL 8893523 pseudo LOC102005551 40S ribosomal protein S3a-like NW_004955451 2638931 2646792 + 102005551 AGCD01043017 MODEL 151707882 snorna SNORD65 small nucleolar RNA, C/D box 65 9019940 protein-coding Pdgfc platelet derived growth factor C ENCODES a protein that exhibits platelet-derived growth factor receptor binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN activation of transmembrane receptor protein tyrosine kinase activity (ortholog); animal organ morphogenesis (ortholog); bone development (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); Mesothelioma (ortholog); FOUND IN cell surface (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955471 10318683 10500624 + 102012527 AGCD01053230;AGCD01053231;AGCD01053232;GBDJ01333029;XM_005400945;XM_013522907;XM_013522908;XM_013522909 XP_005401002;XP_013378361;XP_013378362;XP_013378363 MODEL 8761889 protein-coding LOC102024439 prostate and testis expressed protein 3 NW_004955412 26865766 26870441 + 102024439 AGCD01013223;GBDF01193345;XM_005378472;XR_001232855;XR_001232856 XP_005378529 MODEL 8849954 protein-coding Sesn2 sestrin 2 ENCODES a protein that exhibits GDP-dissociation inhibitor activity (ortholog); L-leucine binding (ortholog); peroxidase activity (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); cellular oxidant detoxification (ortholog); cellular response to amino acid starvation (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Colorectal Neoplasms (ortholog); Hepatomegaly (ortholog); FOUND IN Atg1/ULK1 kinase complex (ortholog); cytoplasm (ortholog); lysosomal membrane (ortholog) NW_004955452 7392644 7417204 + 102014203 AGCD01044151;AGCD01044152;AGCD01044153;AGCD01044154;GBBH01131789;GBDF01160814;XM_005394946 XP_005395003 MODEL 9053543 ncrna LOC102015683 uncharacterized LOC102015683 NW_004955403 3112831 3119376 - 102015683 AGCD01001752;GBDF01279437;XR_259144 MODEL 39133343 snrna U4 U4 spliceosomal RNA 8918115 pseudo LOC102010366 regulator of nonsense transcripts 2 pseudogene NW_004955416 11225709 11227659 + 102010366 AGCD01017181 MODEL 8933063 protein-coding Traf6 TNF receptor associated factor 6 ENCODES a protein that exhibits histone deacetylase binding (ortholog); identical protein binding (ortholog); protein kinase B binding (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); animal organ morphogenesis (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; nuclear factor kappa B signaling pathway; p38 MAPK signaling pathway; ASSOCIATED WITH coronary artery disease (ortholog); hypertrophic cardiomyopathy (ortholog); hypohidrotic ectodermal dysplasia (ortholog); FOUND IN CD40 receptor complex (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955422 9925765 9950354 + 102004940 AGCD01022725;AGCD01022726;GBBH01094516;GBDF01224038;XM_005384105 XP_005384162 MODEL 8924684 protein-coding Smg7 SMG7 nonsense mediated mRNA decay factor ENCODES a protein that exhibits protein phosphatase 2A binding (ortholog); telomeric DNA binding (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955406 22273298 22352782 + 102022666 AGCD01006155;AGCD01006156;AGCD01006157;GBBH01164038;XM_005375022;XM_005375023;XM_005375025;XM_005375026;XM_005375028 XP_005375079;XP_005375080;XP_005375082;XP_005375083;XP_005375085 MODEL 8974878 protein-coding Pax7 paired box 7 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN cartilage development (ortholog); chromatin remodeling (ortholog); dorsal/ventral neural tube patterning (ortholog); ASSOCIATED WITH alveolar rhabdomyosarcoma (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital myopathy 19 (ortholog); FOUND IN nucleus (ortholog) NW_004955527 474450 573869 - 102018762 AGCD01069385;GBDI01086234;XM_005409802;XM_005409803;XM_005409804 XP_005409859;XP_005409860;XP_005409861 MODEL 39132481 snorna SNORA70 Small nucleolar RNA SNORA70 9015286 protein-coding Wdr70 WD repeat domain 70 ENCODES a protein that exhibits enzyme binding (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955426 22062872 22344596 + 102016728 AGCD01026604;AGCD01026605;AGCD01026606;AGCD01026607;AGCD01026608;AGCD01026609;AGCD01026610;AGCD01026611;AGCD01026612;AGCD01026613;AGCD01026614;AGCD01026615;AGCD01026616;GBDF01125379;XM_013514960;XM_013514961 XP_013370414;XP_013370415 MODEL 8973032 protein-coding Psmg2 proteasome assembly chaperone 2 ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN chaperone-mediated protein complex assembly (ortholog); mitotic spindle assembly checkpoint signaling (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); Dwarfism (ortholog); dystonia (ortholog); FOUND IN nucleus (ortholog); protein folding chaperone complex (ortholog) NW_004955402 857228 870940 - 102011162 AGCD01000035;AGCD01000036;GBBH01004200;GBCQ01042453;XM_013513426;XM_013513470 XP_013368880;XP_013368924 MODEL 39133346 snrna U4 U4 spliceosomal RNA 9053466 protein-coding Trmu tRNA mitochondrial 2-thiouridylase ASSOCIATED WITH aminoglycoside-induced deafness (ortholog); genetic disease (ortholog); infantile liver failure syndrome (ortholog); FOUND IN mitochondrion (ortholog) NW_004955413 30440014 30453860 + 102012183 AGCD01014608;GBDF01131064;XM_005379512;XM_013511394;XM_013511395;XM_013511396 XP_005379569;XP_013366848;XP_013366849;XP_013366850 MODEL 8822605 pseudo LOC102012739 olfactory receptor 6C74-like NW_004955458 2426969 2427904 - 102012739 AGCD01047233 MODEL 8775346 protein-coding LOC102018725 somatotropin-like NW_004955478 7920783 7923119 + 102018725 AGCD01055998;GBDJ01024839;XM_005402180 XP_005402237 MODEL 8800240 protein-coding Srsf1 serine and arginine rich splicing factor 1 ENCODES a protein that exhibits DNA topoisomerase binding (ortholog); mRNA binding (ortholog); protein kinase B binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); cardiac muscle contraction (ortholog); cellular response to interleukin-17 (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Cardiomegaly (ortholog); cervix uteri carcinoma in situ (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); exon-exon junction complex (ortholog) NW_004955451 4992634 4996619 + 102004545 AGCD01043157;GBDI01001036;XM_005394041;XR_262578 XP_005394098 MODEL 8789734 pseudo LOC102005556 ATP-binding cassette sub-family F member 2 pseudogene NW_004955406 13707389 13709243 + 102005556 AGCD01005949 MODEL 9038745 protein-coding Pnmt phenylethanolamine N-methyltransferase ENCODES a protein that exhibits phenylethanolamine N-methyltransferase activity (ortholog); INVOLVED IN adrenal gland development (ortholog); cellular response to dexamethasone stimulus (ortholog); cellular response to growth factor stimulus (ortholog); PARTICIPATES IN alkaptonuria pathway; aromatic L-amino acid decarboxylase deficiency pathway; catecholamine biosynthetic pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Contusions (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); neuronal cell body (ortholog) NW_004955451 14414836 14417972 + 102028817 AGCD01043552;GBCB01077385;XM_005394315;XM_005394316 XP_005394372;XP_005394373 MODEL 8855899 protein-coding Rell2 RELT like 2 ENCODES a protein that exhibits collagen binding (ortholog); INVOLVED IN positive regulation of cell-substrate adhesion (ortholog); positive regulation of p38MAPK cascade (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog) NW_004955415 12134642 12138071 - 102005796 AGCD01016185;GBDF01165826;XM_005380727;XM_013512220;XM_013512221 XP_005380784;XP_013367674;XP_013367675 MODEL 8768067 protein-coding Pfn4 profilin family member 4 INVOLVED IN acrosome assembly (ortholog); flagellated sperm motility (ortholog); manchette assembly (ortholog) NW_004955469 6299451 6306564 - 102026627 AGCD01052379;AGCD01052380;GBDF01083804;XM_005400382;XM_005400383;XM_005400384 XP_005400439;XP_005400440;XP_005400441 MODEL 8884781 protein-coding Socs7 suppressor of cytokine signaling 7 ENCODES a protein that exhibits phosphorylation-dependent protein binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN cerebral cortex radially oriented cell migration (ortholog); fat cell differentiation (ortholog); insulin receptor signaling pathway (ortholog); PARTICIPATES IN insulin signaling pathway; Jak-Stat signaling pathway; ASSOCIATED WITH ovarian carcinoma (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955451 13567377 13595685 + 102017528 AGCD01043490;GBBH01037090;GBDF01007859;XM_013519430 XP_013374884 MODEL 8717181 protein-coding LOC102008487 actin cytoskeleton-regulatory complex protein pan1-like NW_004955451 2446558 2456251 - 102008487 AGCD01043009;GBBH01184630;XM_013519305 XP_013374759 MODEL 8732395 protein-coding Plcb1 phospholipase C beta 1 ENCODES a protein that exhibits calcium ion binding (ortholog); calmodulin binding (ortholog); enzyme binding (ortholog); INVOLVED IN activation of meiosis involved in egg activation (ortholog); cellular response to fluoride (ortholog); cellular response to glyceraldehyde (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); ALAGILLE SYNDROME 1 (ortholog); Alzheimer's disease (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); GABA-ergic synapse (ortholog) NW_004955415 18210608 18915099 + 102020797 AGCD01016445;AGCD01016446;AGCD01016447;AGCD01016448;AGCD01016449;AGCD01016450;AGCD01016451;AGCD01016452;AGCD01016453;AGCD01016454;AGCD01016455;AGCD01016456;AGCD01016457;AGCD01016458;AGCD01016459;AGCD01016460;GBCB01041065;GBDI01190271;XM_005380862 XP_005380919 MODEL 39131575 protein-coding TSHZ1 teashirt zinc finger homeobox 1 8836384 protein-coding LOC102017598 metallothionein-I, hippocampal-like NW_004955433 14372766 14374000 + 102017598 AGCD01031721;GBDF01147217;XM_005388356 XP_005388413 MODEL 8987737 protein-coding Pigz phosphatidylinositol glycan anchor biosynthesis class Z ENCODES a protein that exhibits alpha-1,2-mannosyltransferase activity (ortholog); mannosyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); schizophrenia (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955420 12994892 13003170 - 102017458 AGCD01020910;GBDI01182697;GBDJ01228590;XM_013513393 XP_013368847 MODEL 8768302 protein-coding Ppara peroxisome proliferator activated receptor alpha ENCODES a protein that exhibits DNA-binding transcription activator activity (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN behavioral response to nicotine (ortholog); cellular response to fructose stimulus (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); acute kidney tubular necrosis (ortholog); alcoholic hepatitis (ortholog); FOUND IN nucleus (ortholog) NW_004955413 30306563 30366245 + 102008082 AGCD01014605;AGCD01014606;AGCD01014607;AGCD01014608;GBDJ01304514;XM_005379496;XM_005379497;XM_005379498;XM_005379499;XM_005379500;XM_013511380 XP_005379553;XP_005379554;XP_005379555;XP_005379556;XP_005379557;XP_013366834 MODEL 9014426 protein-coding Slc27a5 solute carrier family 27 member 5 ENCODES a protein that exhibits cholate-CoA ligase activity (ortholog); fatty acid transmembrane transporter activity (ortholog); long-chain fatty acid transmembrane transporter activity (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); bile acid metabolic process (ortholog); establishment of localization in cell (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH myoepithelioma (ortholog); FOUND IN basal plasma membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955584 1112387 1121500 - 102020177 AGCD01075980;GBDJ01219275;XM_005414398 XP_005414455 MODEL 8902797 protein-coding Rims1 regulating synaptic membrane exocytosis 1 ENCODES a protein that exhibits protein kinase binding (ortholog); SH3 domain binding (ortholog); small GTPase binding (ortholog); INVOLVED IN acrosomal vesicle exocytosis (ortholog); calcium ion-regulated exocytosis of neurotransmitter (ortholog); long-term synaptic potentiation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); bipolar disorder (ortholog); FOUND IN extrinsic component of presynaptic active zone membrane (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog) NW_004955488 6999128 7196583 + 102007439 AGCD01059669;AGCD01059670;AGCD01059671;AGCD01059672;AGCD01059673;AGCD01059674;GBBH01112718;XM_013504429;XM_013504430;XM_013504431;XM_013504432;XM_013504433;XM_013504434;XM_013504435;XM_013504436;XM_013504437;XM_013504438;XM_013504439;XM_013504440;XM_013504441;XM_013504442;XM_013504443;XM_013504444;XM_013504445;XM_013504446;XM_013504447 XP_013359883;XP_013359884;XP_013359885;XP_013359886;XP_013359887;XP_013359888;XP_013359889;XP_013359890;XP_013359891;XP_013359892;XP_013359893;XP_013359894;XP_013359895;XP_013359896;XP_013359897;XP_013359898;XP_013359899;XP_013359900;XP_013359901 MODEL 8940773 protein-coding Rassf7 Ras association domain family member 7 ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); Chanarin-Dorfman syndrome (ortholog); Costello syndrome (ortholog); FOUND IN centriolar satellite (ortholog) NW_004955476 11485308 11487840 - 102012318 AGCD01055460;GBBH01061456;XM_013502923 XP_013358377 MODEL 9028873 protein-coding LOC102012740 interferon-inducible GTPase 1-like NW_004955408 2198852 2276939 - 102012740 AGCD01007998;AGCD01007999;AGCD01008000;AGCD01008001;AGCD01008002;AGCD01008003;GBDK01009851;XM_005376044;XM_013508115 XP_005376101;XP_013363569 MODEL 8886344 pseudo LOC102006983 39S ribosomal protein L32, mitochondrial pseudogene NW_004955408 16943160 16949169 + 102006983 AGCD01008449 MODEL 8817344 protein-coding Rtn4rl1 reticulon 4 receptor like 1 ENCODES a protein that exhibits chondroitin sulfate binding (ortholog); heparin binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN corpus callosum development (ortholog); negative regulation of axon regeneration (ortholog); negative regulation of neuron projection development (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955481 1209429 1277309 + 102013083 AGCD01056828;AGCD01056829;AGCD01056830;GBCE01021884;XM_005402600;XM_005402601;XM_013503376;XM_013503377;XR_263758;XR_263759;XR_263760;XR_263761;XR_263762 XP_005402657;XP_005402658;XP_013358830;XP_013358831 MODEL 8836186 ncrna LOC102011114 uncharacterized LOC102011114 NW_004955416 28362023 28367569 + 102011114 AGCD01017627;GBCQ01114433;XR_001233378;XR_001233379;XR_260430;XR_260431;XR_260433 MODEL 8949682 pseudo LOC102023365 probable U3 small nucleolar RNA-associated protein 11 pseudogene NW_004955486 1392411 1393168 + 102023365 AGCD01058949 MODEL 8807361 protein-coding Enpp6 ectonucleotide pyrophosphatase/phosphodiesterase 6 ENCODES a protein that exhibits glycerophosphocholine cholinephosphodiesterase activity (ortholog); glycerophosphodiester phosphodiesterase activity (ortholog); phosphoric diester hydrolase activity (ortholog); INVOLVED IN choline metabolic process (ortholog); lipid metabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog) NW_004955403 24528644 24788878 + 102007491 AGCD01002274;AGCD01002275;AGCD01002276;AGCD01002277;GBBH01100140;XM_005373495;XM_013513092;XM_013513095 XP_005373552;XP_013368546;XP_013368549 MODEL 10385484 ncrna LOC106147058 uncharacterized LOC106147058 NW_004955514 2646798 2653474 - 106147058 AGCD01067085;GBDI01324427;XR_001231766;XR_001231767 MODEL 39133772 snorna SNORD67 small nucleolar RNA, C/D box 67 8710174 pseudo LOC102024440 elongation factor 1-alpha 1 pseudogene NW_004955466 13847858 13849554 + 102024440 AGCD01051188;XR_263320 MODEL 8794655 ncrna LOC102010368 uncharacterized LOC102010368 NW_004955417 26506352 26519514 - 102010368 AGCD01018512;AGCD01018513;GBDJ01093566;XR_001233419;XR_001233420;XR_001233421 MODEL 10275540 ncrna LOC106149893 uncharacterized LOC106149893 NW_004955456 13264037 13266528 - 106149893 AGCD01046582;GBCB01008407;XR_001236349;XR_001236350 MODEL 8809165 pseudo LOC102011948 NF-kappa-B inhibitor-interacting Ras-like protein 1 NW_004955453 11424663 11425286 - 102011948 AGCD01044807 MODEL 8847566 protein-coding Tk2 thymidine kinase 2 ENCODES a protein that exhibits deoxycytidine kinase activity (ortholog); thymidine kinase activity (ortholog); INVOLVED IN deoxycytidine metabolic process (ortholog); deoxyribonucleotide metabolic process (ortholog); mitochondrial DNA metabolic process (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 3 (ortholog); cataract 5 multiple types (ortholog); FOUND IN mitochondrion (ortholog) NW_004955433 23075930 23106281 - 102019943 AGCD01031952;GBCB01120791;XM_005388462;XM_005388463;XM_005388466;XM_013516240;XM_013516241;XM_013516242 XP_005388519;XP_005388520;XP_005388523;XP_013371694;XP_013371695;XP_013371696 MODEL 8793972 protein-coding LOC102009615 translation initiation factor IF-2-like NW_004955420 29366247 29393153 - 102009615 AGCD01021498;AGCD01021499;GBBH01125290;XM_013513409;XR_001233708 XP_013368863 MODEL 8735588 trna trnA(tgc) tRNA-Ala MT 5014 5083 - 15822221 8731640 protein-coding Psmg3 proteasome assembly chaperone 3 ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN chaperone-mediated protein complex assembly (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955460 9186205 9187942 - 102020889 AGCD01048541;GBDF01159629;XM_005397814;XM_013521205;XM_013521206 XP_005397871;XP_013376659;XP_013376660 MODEL 8737230 protein-coding LOC102011555 probable inactive serine protease 58 NW_004955494 1266343 1273436 + 102011555 AGCD01061393;GBDF01081972;XM_005405395;XM_013504926 XP_005405452;XP_013360380 MODEL 9059391 protein-coding Wdr72 WD repeat domain 72 INVOLVED IN ameloblast differentiation (ortholog); amelogenesis (ortholog); enamel mineralization (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta hypomaturation type 2A3 (ortholog); amelogenesis imperfecta type 1C (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); nucleus (ortholog) NW_004955409 1451506 1631976 + 102016672 AGCD01009176;AGCD01009177;AGCD01009178;AGCD01009179;AGCD01009180;GBCQ01031346;XM_005376626;XM_013510272;XM_013510273;XM_013510274 XP_005376683;XP_013365726;XP_013365727;XP_013365728 MODEL 8794019 protein-coding Rabgap1l RAB GTPase activating protein 1 like ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN regulation of cilium assembly (ortholog); regulation of protein localization (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); cholesteatoma (ortholog); FOUND IN cilium (ortholog); early endosome (ortholog); Golgi apparatus (ortholog) NW_004955406 14216549 14815052 + 102011730 AGCD01005960;AGCD01005961;AGCD01005962;AGCD01005963;AGCD01005964;AGCD01005965;AGCD01005966;AGCD01005967;AGCD01005968;AGCD01005969;AGCD01005970;AGCD01005971;GBDF01016451;XM_005374884;XM_005374886;XM_005374887;XM_005374888;XM_005374889;XM_005374890;XM_005374891;XM_005374892;XM_013520892;XM_013520898 XP_005374941;XP_005374943;XP_005374944;XP_005374945;XP_005374946;XP_005374947;XP_005374948;XP_005374949;XP_013376346;XP_013376352 MODEL 8932454 protein-coding Ndrg1 N-myc downstream regulated 1 ENCODES a protein that exhibits cadherin binding (ortholog); gamma-tubulin binding (ortholog); microtubule binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); mast cell activation (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH benign neonatal seizures (ortholog); Breast Neoplasms (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN adherens junction (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955461 7787068 7836380 - 102016138 AGCD01048923;GBBH01061733;XM_005398027;XM_013521347 XP_005398084;XP_013376801 MODEL 8824239 protein-coding Tshz2 teashirt zinc finger homeobox 2 INVOLVED IN regulation of gene expression (ortholog); ASSOCIATED WITH amenorrhea (ortholog); COVID-19 (ortholog); syndromic microphthalmia 5 (ortholog) NW_004955445 5571587 5830728 - 102016322 AGCD01039472;AGCD01039473;AGCD01039474;AGCD01039475;GBDF01222748;XM_005392287 XP_005392344 MODEL 8817216 pseudo LOC102006599 protein kinase C iota type-like NW_004955430 12745518 12748115 - 102006599 AGCD01029509;AGCD01029510 MODEL 8948205 protein-coding LOC102015684 ubiquitin carboxyl-terminal hydrolase 28-like NW_004955659 2405 15601 + 102015684 AGCD01077875;GBCB01026188;GBDJ01061026;XM_013510176 XP_013365630 MODEL 8999811 pseudo LOC102023368 coiled-coil domain-containing protein 93 pseudogene NW_004955488 3782918 3784816 + 102023368 AGCD01059584;XR_263998 MODEL 8870975 protein-coding Sesn3 sestrin 3 INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to amino acid stimulus (ortholog); cellular response to glucose starvation (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); intellectual disability (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); GATOR2 complex (ortholog); TORC2 complex (ortholog) NW_004955412 100335 125395 - 102027390 AGCD01012481;GBBH01141125;GBDF01041588;XM_013511114 XP_013366568 MODEL 8853203 protein-coding Rtn4rl2 reticulon 4 receptor like 2 ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); corpus callosum development (ortholog); negative regulation of neuron projection development (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); external side of plasma membrane (ortholog) NW_004955511 2463006 2474045 + 102029773 AGCD01066405;AGCD01066406;AGCD01066407;AGCD01066408;GBDF01148153;XM_013506377 XP_013361831 MODEL 8750770 protein-coding Prpf4 pre-mRNA splicing tri-snRNP complex factor PRPF4 INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH fundus dystrophy (ortholog); retinitis pigmentosa 70 (ortholog); substance-related disorder (ortholog); FOUND IN Cajal body (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955419 14190146 14206086 - 102025798 AGCD01020013;GBDF01190621;XM_005382685 XP_005382742 MODEL 150537114 snorna SNORD69 small nucleolar RNA, C/D box 69 9061677 protein-coding Reln reelin ENCODES a protein that exhibits lipoprotein particle receptor binding (ortholog); receptor ligand activity (ortholog); serine-type peptidase activity (ortholog); INVOLVED IN associative learning (ortholog); axon guidance (ortholog); brain development (ortholog); PARTICIPATES IN altered Reelin signaling pathway; Reelin signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Ataxia (ortholog); autism spectrum disorder (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955410 8424439 8863966 - 102018268 AGCD01010746;AGCD01010747;AGCD01010748;AGCD01010749;AGCD01010750;AGCD01010751;AGCD01010752;AGCD01010753;GBCE01089394;XM_005377235;XM_005377236 XP_005377292;XP_005377293 MODEL 8954322 protein-coding Bub1 BUB1 mitotic checkpoint serine/threonine kinase ENCODES a protein that exhibits histone H2A kinase activity (ortholog); protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); intrinsic apoptotic signaling pathway (ortholog); mitotic spindle assembly checkpoint signaling (ortholog); ASSOCIATED WITH colon carcinoma (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN chromosome, centromeric region (ortholog); condensed chromosome, centromeric region (ortholog); cytosol (ortholog) NW_004955470 3152798 3190185 + 102007217 AGCD01052692;AGCD01052693;GBDF01156049;XM_005400628 XP_005400685 MODEL 8971611 protein-coding LOC102008488 palladin NW_004955403 37248908 37286650 - 102008488 AGCD01002565;GBCQ01040632;GBDJ01020208;XM_013513428 XP_013368882 MODEL 8767863 protein-coding Pax8 paired box 8 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); cellular response to gonadotropin stimulus (ortholog); central nervous system development (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); congenital hypothyroidism (ortholog); congenital nongoitrous hypothyroidism 2 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955470 1016226 1072643 + 102018915 AGCD01052624;AGCD01052625;GBCQ01000755;XM_005400576;XM_005400577;XM_005400581 XP_005400633;XP_005400634;XP_005400638 MODEL 8863145 protein-coding LOC102008089 cystatin-C-like NW_004955415 30698518 30701160 + 102008089 AGCD01016666;GBDJ01009478;XM_005380979 XP_005381036 MODEL 41410891 protein-coding PIGZ phosphatidylinositol glycan anchor biosynthesis class Z 9028273 protein-coding Sod1 superoxide dismutase 1 ENCODES a protein that exhibits copper ion binding (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN action potential initiation (ortholog); anterograde axonal transport (ortholog); apoptotic process (ortholog); PARTICIPATES IN amyotrophic lateral sclerosis pathway; forkhead class A signaling pathway; hypertension pathway; ASSOCIATED WITH acute kidney failure (ortholog); alcohol use disorder (ortholog); Alcoholic Liver Diseases (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955407 31261451 31267657 + 102014981 AGCD01007644;AGCD01007645;GBDF01011265;XM_013504103 XP_013359557 MODEL 8836963 protein-coding LOC102019169 translation initiation factor IF-2-like NW_004955417 15890315 15897505 + 102019169 AGCD01018246;GBDF01147172;XM_013512712 XP_013368166 MODEL 8897119 ncrna LOC102008489 uncharacterized LOC102008489 NW_004956123 1825 3767 - 102008489 AGCD01079091;GBDF01090413;XR_001232607;XR_265205 MODEL 8834072 protein-coding Pdgfd platelet derived growth factor D INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH ataxia telangiectasia (ortholog); atherosclerosis (ortholog); Bone Metastasis (ortholog); FOUND IN extracellular space (ortholog) NW_004955412 6868995 7093353 - 102021538 AGCD01012683;AGCD01012684;AGCD01012685;AGCD01012686;AGCD01012687;GBCE01077565;XM_005377998;XM_005377999;XM_013511230;XM_013511231 XP_005378055;XP_005378056;XP_013366684;XP_013366685 MODEL 8795497 ncrna LOC102009616 uncharacterized LOC102009616 NW_004955487 8301569 8308007 + 102009616 AGCD01059433;GBDF01280847;XR_263987 MODEL 9002044 protein-coding Ppard peroxisome proliferator activated receptor delta ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); fatty acid binding (ortholog); linoleic acid binding (ortholog); INVOLVED IN apoptotic process (ortholog); apoptotic signaling pathway (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH Acute-Phase Reaction (ortholog); Alcoholic Liver Diseases (ortholog); biliary tract cancer (ortholog); FOUND IN nucleus (ortholog) NW_004955437 3285281 3354099 + 102025837 AGCD01034305;AGCD01034306;AGCD01034307;AGCD01034308;AGCD01034309;GBBH01050550;GBDF01308373;XM_013516910 XP_013372364 MODEL 8844986 protein-coding Psmg4 proteasome assembly chaperone 4 ENCODES a protein that exhibits protein-containing complex binding (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955465 10007136 10014921 - 102014653 AGCD01050498;GBBH01140190;GBCE01097527;XM_005398894 XP_005398951 MODEL 8740324 pseudo LOC102006984 ADP-ribosylation factor-like protein 2-binding protein pseudogene NW_004955458 70428 74229 + 102006984 AGCD01047106;XM_005397126 MODEL 8778320 pseudo LOC102011560 uncharacterized protein C8orf59 homolog NW_004955500 5318759 5319643 - 102011560 AGCD01063830 MODEL 8785232 protein-coding Rims2 regulating synaptic membrane exocytosis 2 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein-containing complex binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); calcium ion-regulated exocytosis of neurotransmitter (ortholog); calcium-ion regulated exocytosis (ortholog); ASSOCIATED WITH Cohen syndrome (ortholog); CONE-ROD SYNAPTIC DISORDER SYNDROME, CONGENITAL NONPROGRESSIVE (ortholog); lung small cell carcinoma (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); inhibitory synapse (ortholog) NW_004955417 27748090 28131431 + 102021763 AGCD01018566;AGCD01018567;AGCD01018568;AGCD01018569;AGCD01018570;AGCD01018571;AGCD01018572;GBDF01158726;XM_013512858;XM_013512859;XM_013512860;XM_013512861;XM_013512862;XM_013512863 XP_013368312;XP_013368313;XP_013368314;XP_013368315;XP_013368316;XP_013368317 MODEL 8954356 protein-coding Rabgef1 RAB guanine nucleotide exchange factor 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN dendritic transport (ortholog); establishment of localization in cell (ortholog); Kit signaling pathway (ortholog); ASSOCIATED WITH argininosuccinic aciduria (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); nucleolus (ortholog) NW_004955456 8648925 8716337 + 102008289 AGCD01046496;AGCD01046497;AGCD01046498;AGCD01046499;GBBH01126041;GBCB01061813;XM_005396718 XP_005396775 MODEL 8979090 protein-coding LOC102005559 FUN14 domain-containing protein 1-like NW_004955406 23472527 23473294 - 102005559 AGCD01006171;GBDF01050560;XM_005375060 XP_005375117 MODEL 8944882 protein-coding Enpp7 ectonucleotide pyrophosphatase/phosphodiesterase 7 ENCODES a protein that exhibits phosphoric diester hydrolase activity (ortholog); sphingomyelin phosphodiesterase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN fatty acid homeostasis (ortholog); lipid digestion (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH Idiopathic Generalized Epilepsy (ortholog); pityriasis rubra pilaris (ortholog); prostate cancer (ortholog); FOUND IN Golgi apparatus (ortholog); microvillus (ortholog); plasma membrane (ortholog) NW_004955506 3151133 3154613 - 102025145 AGCD01065313;XM_005407509 XP_005407566 MODEL 9015427 protein-coding Slc5a8 solute carrier family 5 member 8 ENCODES a protein that exhibits lactate transmembrane transporter activity (ortholog); monocarboxylate:sodium symporter activity (ortholog); organic acid:sodium symporter activity (ortholog); INVOLVED IN acetate transport (ortholog); chloride transport (ortholog); iodide transport (ortholog); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; ASSOCIATED WITH Colonic Neoplasms (ortholog); hyperuricemia (ortholog); FOUND IN apical plasma membrane (ortholog); GINS complex (ortholog) NW_004955405 36717579 36769074 - 102025972 AGCD01005425;AGCD01005426;AGCD01005427;GBCE01137053;XM_005374548 XP_005374605 MODEL 8772672 protein-coding Smg8 SMG8 nonsense mediated mRNA decay factor INVOLVED IN nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); regulation of protein kinase activity (ortholog); ASSOCIATED WITH ALZAHRANI-KUWAHARA SYNDROME (ortholog); genetic disease (ortholog); Joubert syndrome 1 (ortholog) NW_004955451 3803325 3809055 - 102015796 AGCD01043073;GBDK01026975;XM_005393989;XM_005393990 XP_005394046;XP_005394047 MODEL 39133347 snrna U4 U4 spliceosomal RNA 39132490 snorna SNORA70 Small nucleolar RNA SNORA70 9068082 protein-coding LOC102010369 galectin-9-like NW_004955481 5706510 5744393 - 102010369 AGCD01057000;AGCD01057001;AGCD01057002;GBCE01150879;XM_013503348;XM_013503349 XP_013358802;XP_013358803 MODEL 8796130 pseudo LOC102011563 serine/threonine-protein kinase Sgk1 pseudogene NW_004955426 24322315 24323612 + 102011563 AGCD01026676 MODEL 8946968 protein-coding Ensa endosulfine alpha ENCODES a protein that exhibits potassium channel inhibitor activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN regulation of insulin secretion (ortholog); response to glucose (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN cytoplasm (ortholog) NW_004955413 197239 204867 + 102010046 AGCD01013444;GBDK01006530;XM_005378669;XM_005378670;XM_013511414;XM_013511415 XP_005378726;XP_005378727;XP_013366868;XP_013366869 MODEL 8974542 trna Trnaa-agc transfer RNA alanine (anticodon AGC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978814 AGCD01022921;AGCD01037757;AGCD01039088;AGCD01050627;AGCD01050631;AGCD01052488;AGCD01057602;AGCD01057606;AGCD01058153 MODEL 8808283 protein-coding Plcb2 phospholipase C beta 2 ENCODES a protein that exhibits G-protein beta/gamma-subunit complex binding (ortholog); phosphatidylinositol phospholipase C activity (ortholog); phospholipase C activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); phosphatidylinositol metabolic process (ortholog); phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; G protein mediated signaling pathway via Galphaq family; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Moebius syndrome (ortholog); FOUND IN cytoplasm (ortholog); G-protein beta/gamma-subunit complex (ortholog); neuronal dense core vesicle (ortholog) NW_004955416 7221326 7240743 - 102017866 AGCD01016970;GBDJ01275265;XM_005381228;XM_005381229;XM_005381230;XM_013512599;XM_013512600 XP_005381285;XP_005381286;XP_005381287;XP_013368053;XP_013368054 MODEL 8948880 protein-coding Smg9 SMG9 nonsense mediated mRNA decay factor ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN brain development (ortholog); eye development (ortholog); heart development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Developmental Disabilities (ortholog); ethylmalonic encephalopathy (ortholog) NW_004955555 1463031 1481411 - 102020493 AGCD01073082;GBDK01196575;XM_005412456;XM_005412457;XM_005412458 XP_005412513;XP_005412514;XP_005412515 MODEL 39132503 snorna SNORA70 Small nucleolar RNA SNORA70 8723385 pseudo LOC102012742 gamma-aminobutyric acid receptor-associated protein pseudogene NW_004955409 17452914 17453267 - 102012742 AGCD01009784 MODEL 8801982 protein-coding LOC102003756 olfactory receptor 52E8-like NW_004955414 21787675 21788613 + 102003756 AGCD01015432;XM_005380430 XP_005380487 MODEL 8797975 protein-coding Pax9 paired box 9 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); endoderm development (ortholog); face morphogenesis (ortholog); ASSOCIATED WITH anodontia (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); choreatic disease (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955409 24401599 24443687 - 102024192 AGCD01010083;GBCE01158842;XM_005376908;XM_013510360;XM_013510361;XM_013510362;XM_013510363;XM_013510364 XP_005376965;XP_013365814;XP_013365815;XP_013365816;XP_013365817;XP_013365818 MODEL 8937693 protein-coding P2ry6 pyrimidinergic receptor P2Y6 ENCODES a protein that exhibits G protein-coupled ADP receptor activity (ortholog); G protein-coupled UDP receptor activity (ortholog); G protein-coupled UTP receptor activity (ortholog); INVOLVED IN cellular response to prostaglandin E stimulus (ortholog); cellular response to purine-containing compound (ortholog); cellular response to pyrimidine ribonucleotide (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955414 18177406 18215428 - 102017221 AGCD01015272;GBDK01398355;XM_013511817 XP_013367271 MODEL 10209585 ncrna LOC106147059 uncharacterized LOC106147059 NW_004955514 2691466 2693010 - 106147059 AGCD01067085;GBBH01175162;XR_001231768 MODEL 8874235 trna Trnaa-cgc transfer RNA alanine (anticodon CGC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955483;NW_004955419;NW_004955449 326792;20242611;16876672 326863;20242682;16876743 -;-;- 101978817 AGCD01020232;AGCD01042230;AGCD01057606 MODEL 9050197 protein-coding Traf7 TNF receptor associated factor 7 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN apoptotic process (ortholog); cellular response to interleukin-6 (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH adenomatoid tumor (ortholog); autosomal dominant polycystic kidney disease (ortholog); Cardiac, Facial, and Digital Anomalies with Developmental Delay (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); nucleus (ortholog) NW_004955442 15092955 15112842 - 102030352 AGCD01037859;GBDJ01229191;XM_005391453;XM_013517736;XM_013517737;XM_013517738;XM_013517739 XP_005391510;XP_013373190;XP_013373191;XP_013373192;XP_013373193 MODEL 9019318 protein-coding LOC102006600 ATP-binding cassette sub-family G member 2-like NW_004955433 125610 276438 + 102006600 AGCD01031303;AGCD01031304;AGCD01031305;AGCD01031306;AGCD01031307;AGCD01031308;AGCD01031309;AGCD01031310;AGCD01031311;GBCE01134192;XM_013516145;XM_013516146;XM_013516147;XM_013516148;XM_013516149;XM_013516150;XM_013516151;XM_013516152;XM_013516153;XM_013516154;XM_013516155;XM_013516156;XM_013516157;XM_013516158;XM_013516159;XM_013516160;XM_013516161;XM_013516162;XR_001234729;XR_001234730;XR_001234731;XR_001234732 XP_013371599;XP_013371600;XP_013371601;XP_013371602;XP_013371603;XP_013371604;XP_013371605;XP_013371606;XP_013371607;XP_013371608;XP_013371609;XP_013371610;XP_013371611;XP_013371612;XP_013371613;XP_013371614;XP_013371615;XP_013371616 MODEL 10295351 ncrna LOC106149894 uncharacterized LOC106149894 NW_004955456 16004172 16005972 + 106149894 AGCD01046681;GBDK01118045;XR_001236356 MODEL 8763414 protein-coding Lin54 lin-54 DREAM MuvB core complex component ENCODES a protein that exhibits minor groove of adenine-thymine-rich DNA binding (ortholog); transcription regulatory region nucleic acid binding (ortholog); INVOLVED IN nucleosome organization (ortholog); ASSOCIATED WITH chromosome 4q21 deletion syndrome (ortholog); FOUND IN RNA polymerase II transcription repressor complex (ortholog) NW_004955474 6600766 6660904 + 102003017 AGCD01054482;AGCD01054483;GBBH01221828;GBDF01220818;XM_005401388;XM_005401389 XP_005401445;XP_005401446 MODEL 8724526 protein-coding Rims3 regulating synaptic membrane exocytosis 3 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN calcium-ion regulated exocytosis (ortholog); regulation of membrane potential (ortholog); regulation of synapse organization (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic cytosol (ortholog) NW_004955537 483717 522053 - 102003802 AGCD01070866;GBDF01220201;XM_005410577;XM_005410578;XM_005410579 XP_005410634;XP_005410635;XP_005410636 MODEL 8879661 pseudo LOC102017599 phosphatidylinositol-glycan biosynthesis class F protein pseudogene NW_004955525 636451 637094 - 102017599 AGCD01069002 MODEL 9030056 protein-coding LOC102018726 uncharacterized LOC102018726 NW_004955478 10841511 10868929 - 102018726 AGCD01056152;GBDF01195145;XM_005402275;XM_013503217;XR_001230851;XR_001230852;XR_001230853 XP_005402332;XP_013358671 MODEL 8800326 protein-coding Slc5a9 solute carrier family 5 member 9 NW_004955464 10378071 10407597 - 102005123 AGCD01050125;GBCQ01095601;XM_005398631;XM_005398634;XM_005398636;XM_013521753;XM_013521754;XM_013521755;XM_013521756;XM_013521757 XP_005398688;XP_005398691;XP_005398693;XP_013377207;XP_013377208;XP_013377209;XP_013377210;XP_013377211 MODEL 8859989 protein-coding Slc27a6 solute carrier family 27 member 6 ENCODES a protein that exhibits very long-chain fatty acid-CoA ligase activity (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955415 1973308 2041800 + 102007331 AGCD01015887;AGCD01015888;AGCD01015889;AGCD01015890;AGCD01015891;GBDF01251048;XM_005380551;XM_005380552 XP_005380608;XP_005380609 MODEL 9035641 ncrna LOC102021667 uncharacterized LOC102021667 NW_004955485 5568877 5574178 + 102021667 AGCD01058597;GBDF01042208;XR_263907 MODEL 8865540 protein-coding Prpf40a pre-mRNA processing factor 40 homolog A ENCODES a protein that exhibits proline-rich region binding (ortholog); INVOLVED IN cell migration (ortholog); cytoskeleton organization (ortholog); regulation of cell shape (ortholog); FOUND IN nuclear matrix (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955440 18083838 18128701 - 102008770 AGCD01036595;AGCD01036596;GBCE01097815;GBDI01081076;XM_005390816 XP_005390873 MODEL 9049218 protein-coding Wdr73 WD repeat domain 73 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN cytoplasmic microtubule organization (ortholog); nucleus organization (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); dystonia (ortholog); FOUND IN cleavage furrow (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955416 14471479 14485416 + 102012643 AGCD01017270;AGCD01017271;GBCB01039745;XM_005381498 XP_005381555 MODEL 8983867 pseudo LOC102009624 nuclear receptor-binding factor 2 pseudogene NW_004955495 3092379 3093300 + 102009624 AGCD01061822 MODEL 39132516 snorna SNORA70 Small nucleolar RNA SNORA70 8923000 protein-coding Sod2 superoxide dismutase 2 ENCODES a protein that exhibits DNA binding (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN acetylcholine-mediated vasodilation involved in regulation of systemic arterial blood pressure (ortholog); apoptotic mitochondrial changes (ortholog); cellular response to ethanol (ortholog); PARTICIPATES IN hypertension pathway; ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); abdominal aortic aneurysm (ortholog); Acute Coronary Syndrome (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955439 21209101 21223538 + 102018438 AGCD01036146;AGCD01036147;AGCD01036148;GBBH01000815;XM_005390723 XP_005390780 MODEL 9007545 protein-coding Ndrg2 NDRG family member 2 INVOLVED IN negative regulation of cytokine production (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); negative regulation of vascular associated smooth muscle cell proliferation (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); cataract (ortholog); Colonic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); nucleus (ortholog) NW_004955550 1771514 1778693 - 102030351 AGCD01072587;GBCC01012894;GBDI01017782;XM_013508572;XM_013508573 XP_013364026;XP_013364027 MODEL 8837721 pseudo LOC102023369 amyloid beta A4 precursor protein-binding family B member 2 pseudogene NW_004955490 780174 780721 - 102023369 AGCD01060088 MODEL 8771607 protein-coding Pgam1 phosphoglycerate mutase 1 ENCODES a protein that exhibits bisphosphoglycerate mutase activity (ortholog); phosphoglycerate mutase activity (ortholog); protein kinase binding (ortholog); INVOLVED IN canonical glycolysis (ortholog); gluconeogenesis (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955507 3562513 3571400 + 102024486 AGCD01065631;GBDF01053157;XM_005407600 XP_005407657 MODEL 8869505 protein-coding Pdgfra platelet derived growth factor receptor alpha ENCODES a protein that exhibits phosphatidylinositol 3-kinase binding (ortholog); phospholipase C activator activity (ortholog); platelet-derived growth factor alpha-receptor activity (ortholog); INVOLVED IN adrenal gland development (ortholog); anatomical structure morphogenesis (ortholog); animal organ morphogenesis (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH B-lymphoblastic leukemia/lymphoma (ortholog); Brain Injuries (ortholog); brain stem glioma (ortholog); FOUND IN axon (ortholog); cell junction (ortholog); cell surface (ortholog) NW_004955447 16570652 16613410 - 102009436 AGCD01041092;AGCD01041093;AGCD01041094;GBDJ01131981;XM_005392898;XM_005392899 XP_005392955;XP_005392956 MODEL 8779373 protein-coding Pparg peroxisome proliferator activated receptor gamma ENCODES a protein that exhibits alpha-actinin binding (ortholog); arachidonate binding (ortholog); chromatin binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); BMP signaling pathway (ortholog); brown fat cell differentiation (ortholog); PARTICIPATES IN DNA modification pathway; Wnt signaling, non-canonical pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); acute kidney failure (ortholog); Acute Lung Injury (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955429 14814690 14936869 + 102018008 AGCD01028785;AGCD01028786;AGCD01028787;GBCQ01128594;XM_005387017;XM_005387018;XM_005387019 XP_005387074;XP_005387075;XP_005387076 MODEL 8962972 protein-coding P2ry8 P2Y receptor family member 8 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN Rho-activating G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); amenorrhea (ortholog); autistic disorder (ortholog); FOUND IN plasma membrane (ortholog) NW_004955499 1062233 1064588 - 102024704 AGCD01063311;GBDJ01195572;XM_005406556 XP_005406613 MODEL 10223540 protein-coding LOC106147060 collagen alpha-1(III) chain-like NW_004955514 1492100 1492656 + 106147060 AGCD01067054;GBCQ01059369;GBDK01283995;XM_013506811 XP_013362265 MODEL 8976495 protein-coding Rabggtb Rab geranylgeranyltransferase subunit beta ENCODES a protein that exhibits isoprenoid binding (ortholog); Rab geranylgeranyltransferase activity (ortholog); small GTPase binding (ortholog); INVOLVED IN protein geranylgeranylation (ortholog); ASSOCIATED WITH medium chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN Rab-protein geranylgeranyltransferase complex (ortholog) NW_004955423 17155161 17162237 - 102025134 AGCD01023846;AGCD01023847;GBCB01001195;XM_005385227 XP_005385284 MODEL 10287355 protein-coding LOC106149895 uncharacterized LOC106149895 NW_004955456 15265845 15274439 - 106149895 AGCD01046666;GBDK01143761;XM_013520636 XP_013376090 MODEL 8947282 protein-coding Srsf10 serine and arginine rich splicing factor 10 ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN cytosolic transport (ortholog); mRNA splice site recognition (ortholog); mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); Diamond-Blackfan anemia (ortholog); Endometrial Neoplasms (ortholog); FOUND IN axon terminus (ortholog); dendrite (ortholog); neuronal cell body (ortholog) NW_004955452 3831545 3846292 - 102024418 AGCD01043949;AGCD01043950;GBCE01032956;XM_005394789;XM_005394790;XM_005394791;XM_005394792;XM_005394794;XM_013519618 XP_005394846;XP_005394847;XP_005394848;XP_005394849;XP_005394851;XP_013375072 MODEL 8842167 protein-coding Rassf8 Ras association domain family member 8 ASSOCIATED WITH cholangiocarcinoma (ortholog); lung small cell carcinoma (ortholog) NW_004955413 21029725 21052837 + 102004466 AGCD01014244;GBDI01260017;XM_005379106 XP_005379163 MODEL 8966838 ncrna LOC102019181 uncharacterized LOC102019181 NW_004955422 2137150 2166560 + 102019181 AGCD01022480;AGCD01022481;GBDK01327229;XR_001234010;XR_001234011;XR_001234012 MODEL 8767068 protein-coding Pih1d1 PIH1 domain containing 1 ENCODES a protein that exhibits ATPase binding (ortholog); histone binding (ortholog); histone reader activity (ortholog); INVOLVED IN box C/D snoRNP assembly (ortholog); chromatin remodeling (ortholog); epithelial cell differentiation (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955559 1390823 1395550 + 102015464 AGCD01073642;GBDI01019068;XM_005412877;XM_005412878;XM_005412879;XM_005412881;XM_013509019 XP_005412934;XP_005412935;XP_005412936;XP_005412938;XP_013364473 MODEL 8840846 protein-coding Rims4 regulating synaptic membrane exocytosis 4 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN regulation of membrane potential (ortholog); regulation of synapse organization (ortholog); regulation of synaptic vesicle exocytosis (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog); synaptic membrane (ortholog) NW_004955445 12542824 12604355 + 102015787 AGCD01039758;AGCD01039759;GBDF01102651;XM_005392463 XP_005392520 MODEL 8848056 protein-coding Enthd1 ENTH domain containing 1 ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Rubinstein-Taybi syndrome (ortholog) NW_004955413 25580200 25684390 - 102006446 AGCD01014409;AGCD01014410;AGCD01014411;AGCD01014412;GBCB01019792;XM_005379305;XM_013511604 XP_005379362;XP_013367058 MODEL 8800130 protein-coding Psors1c2 psoriasis susceptibility 1 candidate 2 ASSOCIATED WITH megacolon (ortholog); multiple myeloma (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog) NW_004955583 975037 977944 - 102024627 AGCD01075875;GBDJ01298572;XM_005414333;XM_013509772;XM_013509773 XP_005414390;XP_013365226;XP_013365227 MODEL 8740331 ncrna LOC102006991 uncharacterized LOC102006991 NW_004955463 9497759 9499164 + 102006991 AGCD01049785;XR_263164 MODEL 10377279 protein-coding LOC106149896 polycystic kidney disease protein 1-like 1 NW_004955456 5478010 5496105 + 106149896 AGCD01046330;AGCD01046331;AGCD01046332;GBDI01253281;XM_013520638 XP_013376092 MODEL 8822755 protein-coding Paxbp1 PAX3 and PAX7 binding protein 1 ENCODES a protein that exhibits histone methyltransferase binding (ortholog); INVOLVED IN positive regulation of myoblast proliferation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of skeletal muscle satellite cell proliferation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); Familial Platelet Disorder with Associated Myeloid Malignancy (ortholog); FOUND IN nucleus (ortholog) NW_004955407 32178837 32210470 - 102017425 AGCD01007669;AGCD01007670;GBCQ01093479;XM_005375673 XP_005375730 MODEL 8882147 pseudo LOC102019186 zinc finger protein 280D pseudogene NW_004955501 4636880 4667130 + 102019186 AGCD01064133;AGCD01064134;AGCD01064135;AGCD01064136 MODEL 9014895 protein-coding Sestd1 SEC14 and spectrin domain containing 1 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); phosphatidic acid binding (ortholog); phosphatidylcholine binding (ortholog); INVOLVED IN negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel (ortholog); ASSOCIATED WITH Weight Gain (ortholog); FOUND IN calcium channel complex (ortholog); intermediate filament cytoskeleton (ortholog) NW_004955403 17761404 17835528 + 102023421 AGCD01002086;AGCD01002087;GBDK01231007;XM_005373365;XM_005373367;XM_013512590 XP_005373422;XP_005373424;XP_013368044 MODEL 8997714 protein-coding Rtp1 receptor transporter protein 1 ENCODES a protein that exhibits olfactory receptor binding (ortholog); INVOLVED IN protein insertion into membrane (ortholog); ASSOCIATED WITH 3MC syndrome 1 (ortholog); FOUND IN cell surface (ortholog) NW_004955420 20622226 20625073 - 102026751 AGCD01021095;AGCD01021096;GBBH01073077;XM_005383256 XP_005383313 MODEL 39133374 snorna SNORD70 small nucleolar RNA, C/D box 70 8972755 pseudo LOC102023374 glutamate dehydrogenase 1, mitochondrial-like NW_004955423 16916856 16946608 + 102023374 AGCD01023843;XR_260975 MODEL 8938336 protein-coding LOC102019190 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like NW_004955510 397595 407996 - 102019190 AGCD01066147;AGCD01066148;XM_013506307 XP_013361761 MODEL 8929461 protein-coding Bub1b BUB1 mitotic checkpoint serine/threonine kinase B INVOLVED IN metaphase/anaphase transition of mitotic cell cycle (ortholog); mitotic spindle assembly checkpoint signaling (ortholog); protein localization to chromosome, centromeric region (ortholog); ASSOCIATED WITH Aneuploidy (ortholog); Bloom syndrome (ortholog); cerebral palsy (ortholog); FOUND IN ciliary basal body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955416 7105302 7159121 + 102015008 AGCD01016963;AGCD01016964;AGCD01016965;AGCD01016966;GBDF01053678;XM_005381216;XM_005381217;XM_005381218;XM_013512666;XM_013512667 XP_005381273;XP_005381274;XP_005381275;XP_013368120;XP_013368121 MODEL 8871221 pseudo LOC102010370 tax1-binding protein 1 homolog NW_004955418 30088883 30095400 + 102010370 AGCD01019503 MODEL 8986054 pseudo LOC102008093 calcium-binding protein 39 pseudogene NW_004955476 5340462 5341052 + 102008093 AGCD01055302 MODEL 8838317 protein-coding P3h1 prolyl 3-hydroxylase 1 INVOLVED IN bone development (ortholog); collagen fibril organization (ortholog); negative regulation of cell growth (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); glucose transporter type 1 deficiency syndrome 1 (ortholog); FOUND IN basement membrane (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955537 2276080 2292303 - 102015445 AGCD01070921;GBBH01166524;XM_005410618 XP_005410675 MODEL 39133376 snorna SNORD70B small nucleolar RNA, C/D box 70B 8786661 protein-coding LOC102023380 acyl-coenzyme A thioesterase THEM4-like NW_004955427 24601080 24609428 - 102023380 AGCD01027513;GBDI01314053;XM_005386553;XM_013515040 XP_005386610;XP_013370494 MODEL 10263818 pseudo LOC106147061 zinc finger protein 420 pseudogene NW_004955514 1237 4885 - 106147061 AGCD01066991 MODEL 8929280 protein-coding LOC102010731 gap junction epsilon-1 protein NW_004955436 18085611 18087433 - 102010731 AGCD01033955;XM_005389256 XP_005389313 MODEL 8812140 protein-coding Plcb3 phospholipase C beta 3 ENCODES a protein that exhibits calmodulin binding (ortholog); molecular adaptor activity (ortholog); molecular function activator activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); inositol trisphosphate metabolic process (ortholog); phosphatidylinositol catabolic process (ortholog); PARTICIPATES IN endothelin signaling pathway; G protein mediated signaling pathway via Galphaq family; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH chronic ulcer of skin (ortholog); Experimental Diabetes Mellitus (ortholog); Huntington's disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); postsynaptic cytosol (ortholog) NW_004955422 20810871 20827267 - 102017247 AGCD01023089;AGCD01023090;GBDF01280248;GBDK01071508;XM_005384625 XP_005384682 MODEL 8976105 ncrna LOC102011951 uncharacterized LOC102011951 NW_004955455 571092 575802 - 102011951 AGCD01045562;XR_262804;XR_262805 MODEL 8953375 protein-coding Prpf40b pre-mRNA processing factor 40 homolog B NW_004955547 232286 252922 + 102003384 AGCD01072140;AGCD01072141;GBDF01119507;XM_005411832;XM_005411833;XM_005411834;XM_005411836;XM_013508466 XP_005411889;XP_005411890;XP_005411891;XP_005411893;XP_013363920 MODEL 9014004 pseudo LOC102009626 U6 snRNA-associated Sm-like protein LSm6 pseudogene NW_004955423 13610988 13611230 + 102009626 AGCD01023749 MODEL 8753322 trna Trnaa-ggc transfer RNA alanine (anticodon GGC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955403;NW_004955407;NW_004955423;NW_004955421;NW_004955454 2513557;3403311;23453225;6344906;5926569 2513628;3403382;23453296;6344977;5926641 +;+;+;+;- 101978815 AGCD01001737;AGCD01006858;AGCD01021736;AGCD01024005;AGCD01045196 MODEL 8710758 protein-coding LOC102023385 olfactory receptor 4A47-like NW_004955511 106509 107426 - 102023385 AGCD01066320;XM_005407936 XP_005407993 MODEL 8959158 protein-coding Pspc1 paraspeckle component 1 ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); membraneless organelle assembly (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN fibrillar center (ortholog); nucleoplasm (ortholog); paraspeckles (ortholog) NW_004955497 574678 641885 - 102006258 AGCD01062423;AGCD01062424;AGCD01062425;AGCD01062426;GBCQ01068863;GBDF01053680;XM_005406291 XP_005406348 MODEL 8771470 protein-coding Tkfc triokinase and FMN cyclase ENCODES a protein that exhibits FAD-AMP lyase (cyclizing) activity (ortholog); glycerone kinase activity (ortholog); triokinase activity (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); carbohydrate phosphorylation (ortholog); fructose catabolic process to hydroxyacetone phosphate and glyceraldehyde-3-phosphate (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); inherited metabolic disorder (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog) NW_004955511 6200433 6235855 - 102017593 AGCD01066598;GBCE01135212;XM_005408164;XM_005408165;XM_005408166;XM_005408167;XM_005408168 XP_005408221;XP_005408222;XP_005408223;XP_005408224;XP_005408225 MODEL 8835598 protein-coding Paxip1 PAX interacting protein 1 INVOLVED IN adipose tissue development (ortholog); chorion development (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autistic disorder (ortholog); holoprosencephaly 3 (ortholog); FOUND IN histone methyltransferase complex (ortholog); MLL3/4 complex (ortholog); nucleus (ortholog) NW_004955491 8177422 8219764 - 102016063 AGCD01060609;GBBH01150052;GBDF01118963;XM_013504635 XP_013360089 MODEL 8968943 protein-coding LOC102017606 olfactory receptor 11G2-like NW_004955550 856201 857148 + 102017606 AGCD01072527;XM_005412038 XP_005412095 MODEL 8855266 protein-coding Pnn pinin, desmosome associated protein INVOLVED IN cell-cell adhesion (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); desmosome (ortholog) NW_004955409 22102016 22110505 - 102007867 AGCD01010013;AGCD01010014;AGCD01010015;GBCB01043496;GBDI01071652;XM_013510356 XP_013365810 MODEL 39131368 protein-coding PRPF6 pre-mRNA processing factor 6 8910867 ncrna LOC102024442 uncharacterized LOC102024442 NW_004955413 29320976 29322513 + 102024442 AGCD01014580;GBDF01002331;XR_260124 MODEL 9059933 protein-coding Tshz3 teashirt zinc finger homeobox 3 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); kidney morphogenesis (ortholog); kidney smooth muscle cell differentiation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); CAKUT (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN growth cone (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955468 6448167 6669706 + 102006647 AGCD01051985;AGCD01051986;AGCD01051987;AGCD01051988;GBDJ01311365;XM_005400095;XR_263394 XP_005400152 MODEL 8951458 pseudo LOC102012743 spliceosome-associated protein CWC15 homolog pseudogene NW_004955409 26641679 26646568 + 102012743 AGCD01010196 MODEL 8745866 protein-coding Bub3 BUB3 mitotic checkpoint protein INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); protein localization to kinetochore (ortholog); regulation of chromosome segregation (ortholog); ASSOCIATED WITH Premature Aging (ortholog); FOUND IN kinetochore (ortholog); mitotic checkpoint complex (ortholog); nucleoplasm (ortholog) NW_004955477 1305937 1319330 + 102026634 AGCD01055504;GBDF01043135;XM_005401960;XM_005401961 XP_005402017;XP_005402018 MODEL 9033941 ncrna LOC102015687 uncharacterized LOC102015687 NW_004955405 39366026 39376002 - 102015687 AGCD01005499;GBDI01373801;XR_259446 MODEL 8747332 protein-coding Paxx PAXX non-homologous end joining factor ENCODES a protein that exhibits DNA polymerase binding (ortholog); identical protein binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN DNA damage response (ortholog); double-strand break repair via nonhomologous end joining (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN Ku70:Ku80 complex (ortholog); nonhomologous end joining complex (ortholog); nucleoplasm (ortholog) NW_004955513 5017971 5019489 + 102028998 AGCD01066950;GBCQ01041922;XM_005408570 XP_005408627 MODEL 8964166 protein-coding Rin1 Ras and Rab interactor 1 ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN associative learning (ortholog); memory (ortholog); negative regulation of synaptic plasticity (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); neuronal cell body (ortholog) NW_004955422 18989814 18996570 + 102014060 AGCD01022970;GBDJ01361249;XM_005384412 XP_005384469 MODEL 9035162 protein-coding Wdr74 WD repeat domain 74 INVOLVED IN blastocyst formation (ortholog); ribosomal large subunit biogenesis (ortholog); RNA metabolic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); disease of cellular proliferation (ortholog); intellectual disability (ortholog); FOUND IN nuclear exosome (RNase complex) (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955599 408076 413770 + 102005655 AGCD01076646;GBCE01053828;XM_005414759;XM_005414760 XP_005414816;XP_005414817 MODEL 8879541 protein-coding Pvrig PVR related immunoglobulin domain containing ENCODES a protein that exhibits phosphatase binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN negative regulation of T cell receptor signaling pathway (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955573 592438 595056 - 102011063 AGCD01074994;GBDK01306774;XM_013509498;XM_013509499;XM_013509500;XM_013509501;XM_013509502 XP_013364952;XP_013364953;XP_013364954;XP_013364955;XP_013364956 MODEL 39132526 snorna SNORA70 Small nucleolar RNA SNORA70 8987086 protein-coding Relt RELT TNF receptor INVOLVED IN amelogenesis (ortholog); apoptotic process (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 3C (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955414 18074487 18104972 - 102016465 AGCD01015268;AGCD01015269;AGCD01015270;GBDK01307406;XM_005379952;XM_005379953;XM_005379954;XM_013511811 XP_005380009;XP_005380010;XP_005380011;XP_013367265 MODEL 10126340 ncrna LOC106149897 uncharacterized LOC106149897 NW_004955456 9449081 9464760 - 106149897 AGCD01046510;GBDF01306056;XR_001236363;XR_001236364 MODEL 8971448 protein-coding Tsks testis specific serine kinase substrate ENCODES a protein that exhibits protein kinase binding (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); myoepithelioma (ortholog); FOUND IN centriole (ortholog) NW_004955559 1151247 1162856 + 102004756 AGCD01073632;GBCE01108010;XM_005412834;XM_005412835;XM_005412836;XM_005412837;XM_005412838;XM_005412839;XM_005412840;XM_005412841;XM_005412843;XM_005412845 XP_005412891;XP_005412892;XP_005412893;XP_005412894;XP_005412895;XP_005412896;XP_005412897;XP_005412898;XP_005412900;XP_005412902 MODEL 8943639 pseudo LOC102006611 uncharacterized protein C11orf57-like NW_004955439 11295688 11296585 + 102006611 AGCD01035896 MODEL 8775434 protein-coding Set SET nuclear proto-oncogene INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 58 (ortholog); developmental and epileptic encephalopathy (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); lipid droplet (ortholog) NW_004955570 1104447 1117682 + 102025059 AGCD01074788;AGCD01074789;AGCD01074790;GBCC01015512;GBDF01047525;XM_013509410 XP_013364864 MODEL 9036095 protein-coding LOC102011568 olfactory receptor 1013-like NW_004955511 1833015 1833950 + 102011568 AGCD01066381;XM_005407979 XP_005408036 MODEL 8713916 protein-coding Trafd1 TRAF-type zinc finger domain containing 1 INVOLVED IN negative regulation of innate immune response (ortholog); response to cytokine (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955482 8693323 8710226 + 102007771 AGCD01057549;AGCD01057550;GBCB01077429;GBDF01048404;XM_005403189 XP_005403246 MODEL 8794359 protein-coding Pgam2 phosphoglycerate mutase 2 ENCODES a protein that exhibits identical protein binding (ortholog); phosphoglycerate mutase activity (ortholog); INVOLVED IN canonical glycolysis (ortholog); gluconeogenesis (ortholog); glycolytic process (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH Dimauro Disease (ortholog); genetic disease (ortholog); myoglobinuria (ortholog); FOUND IN cytosol (ortholog) NW_004955456 7909891 7912116 + 102023875 AGCD01046435;GBDK01132729;XM_005396680 XP_005396737 MODEL 9030715 protein-coding Lin7a lin-7 homolog A, crumbs cell polarity complex component ENCODES a protein that exhibits L27 domain binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN inner ear development (ortholog); neurotransmitter secretion (ortholog); synaptic vesicle transport (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN basolateral plasma membrane (ortholog); membrane (ortholog); synapse (ortholog) NW_004955405 19403002 19548716 - 102023106 AGCD01005035;AGCD01005036;AGCD01005037;AGCD01005038;GBDJ01263209;XM_005374368;XM_005374369;XM_005374370;XM_013517946 XP_005374425;XP_005374426;XP_005374427;XP_013373400 MODEL 8812664 protein-coding LOC102009630 U8 snoRNA-decapping enzyme-like NW_004955501 7101160 7103076 - 102009630 AGCD01064204;GBDF01154480;XM_005406843 XP_005406900 MODEL 8846606 protein-coding LOC102018733 uncharacterized LOC102018733 NW_004955420 25222759 25231032 - 102018733 AGCD01021347;GBBH01116817;XM_005383418;XR_001233696;XR_260751 XP_005383475 MODEL 8708231 protein-coding Psph phosphoserine phosphatase ENCODES a protein that exhibits identical protein binding (ortholog); L-phosphoserine phosphatase activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); L-serine biosynthetic process (ortholog); L-serine metabolic process (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH amelogenesis imperfecta (ortholog); amino acid metabolic disorder (ortholog); autistic disorder (ortholog) NW_004955456 8198739 8212111 - 102029365 AGCD01046460;AGCD01046461;GBDF01278340;XM_005396697;XM_013520546 XP_005396754;XP_013376000 MODEL 8841957 protein-coding Rabif RAB interacting factor ENCODES a protein that exhibits zinc ion binding (ortholog); ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog) NW_004955406 38883050 38893012 - 102030497 AGCD01006612;GBDF01085052;XM_005375231 XP_005375288 MODEL 8834085 ncrna LOC102021670 uncharacterized LOC102021670 NW_004955486 3982324 3990407 - 102021670 AGCD01059050;GBDF01221596;XR_001231149 MODEL 8716108 pseudo LOC102008096 60S ribosomal protein L6-like NW_004955477 11186663 11187511 - 102008096 AGCD01055719 MODEL 8863835 ncrna LOC102005562 uncharacterized LOC102005562 NW_004955455 10714691 10715717 + 102005562 AGCD01045961;GBDJ01194372;XR_262853 MODEL 10348577 ncrna LOC106147062 uncharacterized LOC106147062 NW_004955514 30315 38953 - 106147062 AGCD01066992;GBCE01179789;XR_001231773 MODEL 39133348 snrna U4 U4 spliceosomal RNA 9004575 ncrna LOC102010733 uncharacterized LOC102010733 NW_004955437 20621891 20626279 + 102010733 AGCD01034877;GBCB01027078;XR_261898 MODEL 8755734 protein-coding Bud13 BUD13 homolog INVOLVED IN mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Achalasia-Progeroid Syndrome (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); U2-type precatalytic spliceosome (ortholog) NW_004955412 18095069 18113386 - 102020228 AGCD01012924;AGCD01012925;AGCD01012926;GBDF01156360;XM_013511204;XM_013511205 XP_013366658;XP_013366659 MODEL 8898374 protein-coding Pdgfrb platelet derived growth factor receptor beta ENCODES a protein that exhibits enzyme binding (ortholog); GTPase activator activity (ortholog); kinase activity (ortholog); INVOLVED IN adrenal gland development (ortholog); aorta morphogenesis (ortholog); blood vessel development (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH atherosclerosis (ortholog); autism spectrum disorder (ortholog); basal ganglia calcification (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955415 4365848 4403317 + 102018718 AGCD01015969;GBDJ01088291;XM_005380586;XM_013512215;XM_013512216 XP_005380643;XP_013367669;XP_013367670 MODEL 8873618 pseudo LOC102008491 60S ribosomal protein L24 pseudogene NW_004955403 25635577 25636027 + 102008491 AGCD01002291 MODEL 8841658 pseudo LOC102023389 40S ribosomal protein S29-like NW_004955435 12512261 12513208 - 102023389 AGCD01033149 MODEL 8730164 protein-coding Slc66a1 solute carrier family 66 member 1 ENCODES a protein that exhibits basic amino acid transmembrane transporter activity (ortholog); L-arginine transmembrane transporter activity (ortholog); L-histidine transmembrane transporter activity (ortholog); INVOLVED IN intracellular amino acid homeostasis (ortholog); L-arginine transmembrane transport (ortholog); L-histidine transmembrane transport (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); lysosomal membrane (ortholog); organelle membrane (ortholog) NW_004955452 17459 22259 + 102011076 AGCD01043796;GBDF01154072;XM_013519452 XP_013374906 MODEL 8726655 protein-coding Slc28a1 solute carrier family 28 member 1 ENCODES a protein that exhibits azole transmembrane transporter activity (ortholog); pyrimidine nucleobase transmembrane transporter activity (ortholog); pyrimidine- and adenosine-specific:sodium symporter activity (ortholog); INVOLVED IN azole transmembrane transport (ortholog); cytidine transport (ortholog); nucleoside import across plasma membrane (ortholog); PARTICIPATES IN capecitabine pharmacodynamics pathway; capecitabine pharmacokinetics pathway; gemcitabine pharmacodynamics pathway; ASSOCIATED WITH Bloom syndrome (ortholog); Breast Neoplasms (ortholog); colorectal cancer (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); cytosol (ortholog) NW_004955416 14226411 14267962 - 102009715 AGCD01017248;AGCD01017249;GBCQ01101688;XM_005381488;XM_013512686;XM_013512687 XP_005381545;XP_013368140;XP_013368141 MODEL 8953987 protein-coding Smim1 small integral membrane protein 1 (Vel blood group) ENCODES a protein that exhibits protein homodimerization activity (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); Goldberg-Shprintzen syndrome (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955486 7889510 7895281 - 102022928 AGCD01059139;GBDK01081865;XM_005404132;XM_005404133 XP_005404189;XP_005404190 MODEL 8810957 protein-coding Pdgfrl platelet derived growth factor receptor like ASSOCIATED WITH colon carcinoma (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog) NW_004955552 2041267 2077971 - 102027237 AGCD01072797;GBCE01066660;GBDI01112826;XM_013508605 XP_013364059 MODEL 8842626 protein-coding Lin7b lin-7 homolog B, crumbs cell polarity complex component ENCODES a protein that exhibits PDZ domain binding (ortholog); protein domain specific binding (ortholog); protein kinase binding (ortholog); INVOLVED IN neurotransmitter secretion (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); progressive familial heart block type IB (ortholog); FOUND IN cell-cell junction (ortholog); plasma membrane (ortholog); postsynaptic density, intracellular component (ortholog) NW_004955559 1610924 1613736 - 102020061 AGCD01073653;GBCB01002101;XM_013509002;XM_013509003 XP_013364456;XP_013364457 MODEL 9060229 protein-coding P3h2 prolyl 3-hydroxylase 2 ENCODES a protein that exhibits procollagen-proline 3-dioxygenase activity (ortholog); INVOLVED IN collagen metabolic process (ortholog); negative regulation of cell population proliferation (ortholog); peptidyl-proline hydroxylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); High Myopia with Cataract and Vitreoretinal Degeneration (ortholog); intestinal disease (ortholog); FOUND IN basement membrane (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955420 17964153 18118442 + 102016715 AGCD01021036;AGCD01021037;AGCD01021038;AGCD01021039;AGCD01021040;GBCE01039367;GBCQ01041857;XM_005383229 XP_005383286 MODEL 8725804 protein-coding LOC102024443 taste receptor type 2 member 140-like NW_004955413 8151739 8152674 - 102024443 AGCD01013852;XM_005379630 XP_005379687 MODEL 8824275 pseudo LOC102018737 dnaJ homolog subfamily A member 1-like NW_004955489 1322766 1323948 - 102018737 AGCD01059836 MODEL 8762381 ncrna LOC102021673 uncharacterized LOC102021673 NW_004955488 1906171 1944728 - 102021673 AGCD01059513;AGCD01059514;GBDF01253331;XR_263996 MODEL 8995005 protein-coding Pspn persephin ENCODES a protein that exhibits growth factor activity (ortholog); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); glial cell-derived neurotrophic factor receptor signaling pathway (ortholog); ASSOCIATED WITH mucolipidosis type IV (ortholog); FOUND IN extracellular space (ortholog) NW_004955495 3218720 3220941 + 102014686 AGCD01061838;GBCE01007404;XM_005405723 XP_005405780 MODEL 9028386 protein-coding Ndrg3 NDRG family member 3 INVOLVED IN decidualization (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); FOUND IN cytoplasm (ortholog) NW_004955422 24901975 24972033 + 102020350 AGCD01023238;AGCD01023239;GBDF01002354;XM_005384731;XM_005384732;XM_005384733;XM_013514021;XM_013514022 XP_005384788;XP_005384789;XP_005384790;XP_013369475;XP_013369476 MODEL 8865628 protein-coding LOC102011120 filamin-interacting protein FAM101A ENCODES a protein that exhibits filamin binding (ortholog); INVOLVED IN actin filament bundle organization (ortholog); negative regulation of bone mineralization involved in bone maturation (ortholog); negative regulation of chondrocyte development (ortholog); FOUND IN actin filament bundle (ortholog) NW_004955482 5034075 5044162 - 102011120 AGCD01057318;GBCE01016386;XM_005403010;XM_005403011;XM_013503639 XP_005403067;XP_005403068;XP_013359093 MODEL 8750752 protein-coding Rtp2 receptor transporter protein 2 ENCODES a protein that exhibits olfactory receptor binding (ortholog); INVOLVED IN protein insertion into membrane (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cell surface (ortholog) NW_004955420 20043153 20047082 + 102024803 AGCD01021071;GBBH01107471;XM_005383249 XP_005383306 MODEL 10187384 ncrna LOC106147063 uncharacterized LOC106147063 NW_004955408 31085631 31093142 + 106147063 AGCD01008821;XR_001231774 MODEL 9010891 protein-coding Wdr75 WD repeat domain 75 INVOLVED IN positive regulation of rRNA processing (ortholog); positive regulation of transcription by RNA polymerase I (ortholog); ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome classic type 1 (ortholog); Ehlers-Danlos Syndrome Type 4 (ortholog); immunodeficiency 31B (ortholog); FOUND IN nucleolus (ortholog); small-subunit processome (ortholog) NW_004955403 9352615 9383206 - 102008367 AGCD01001905;GBDJ01219698;XM_005373322 XP_005373379 MODEL 8768950 protein-coding LOC102011956 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955456 13079418 13133056 - 102011956 AGCD01046578;GBDK01016339;XM_013520498;XM_013520499;XM_013520500;XM_013520502;XM_013520503;XM_013520504;XM_013520505 XP_013375952;XP_013375953;XP_013375954;XP_013375956;XP_013375957;XP_013375958;XP_013375959 MODEL 8955397 protein-coding Rin2 Ras and Rab interactor 2 INVOLVED IN positive regulation of endothelial cell migration (ortholog); positive regulation of endothelial cell-matrix adhesion via fibronectin (ortholog); positive regulation of vasculogenesis (ortholog); ASSOCIATED WITH familial hyperinsulinemic hypoglycemia 1 (ortholog); genetic disease (ortholog); Macrocephaly, Alopecia, Cutis Laxa, and Scoliosis (ortholog) NW_004955415 27953670 28130122 + 102020331 AGCD01016636;AGCD01016637;GBDF01062630;XM_013512179;XM_013512180;XM_013512181;XM_013512182;XM_013512183;XM_013512184 XP_013367633;XP_013367634;XP_013367635;XP_013367636;XP_013367637;XP_013367638 MODEL 10238139 protein-coding LOC106149898 uncharacterized LOC106149898 NW_004955456 13865208 13938399 - 106149898 AGCD01046626;AGCD01046627;AGCD01046628;AGCD01046629;XM_013520652 XP_013376106 MODEL 8902792 pseudo LOC102006616 renin receptor pseudogene NW_004955442 7678453 7681635 + 102006616 AGCD01037628;XM_005391180 MODEL 8800744 ncrna LOC102017608 uncharacterized LOC102017608 NW_004955442 14552373 14553007 + 102017608 AGCD01037826;XR_001235384 MODEL 150537106 snorna SNORD71 small nucleolar RNA, C/D box 71 8779551 protein-coding Pno1 partner of NOB1 homolog INVOLVED IN ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); small-subunit processome (ortholog) NW_004955424 16697109 16705963 - 102023494 AGCD01024748;GBDI01227497;XM_005385673 XP_005385730 MODEL 8969088 protein-coding Pih1d2 PIH1 domain containing 2 ENCODES a protein that exhibits small GTPase binding (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); Carney-Stratakis syndrome (ortholog); FOUND IN protein folding chaperone complex (ortholog) NW_004955412 13748120 13755498 - 102025891 AGCD01012844;AGCD01012845;GBCE01169691;XM_005378104;XM_013511039 XP_005378161;XP_013366493 MODEL 8718430 protein-coding Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 ENCODES a protein that exhibits ADP phosphatase activity (ortholog); ATP hydrolysis activity (ortholog); identical protein binding (ortholog); INVOLVED IN ADP catabolic process (ortholog); cellular response to aluminum ion (ortholog); cellular response to interferon-alpha (ortholog); ASSOCIATED WITH agammaglobulinemia 4 (ortholog); autosomal dominant cutis laxa 3 (ortholog); demyelinating disease (ortholog); FOUND IN basement membrane (ortholog); basolateral plasma membrane (ortholog); caveola (ortholog) NW_004955507 2035918 2141327 + 102010183 AGCD01065577;AGCD01065578;AGCD01065579;AGCD01065580;GBDF01127217;XM_005407549;XM_005407551;XM_005407553;XM_013506151;XM_013506153 XP_005407606;XP_005407608;XP_005407610;XP_013361605;XP_013361607 MODEL 8705735 protein-coding Rassf9 Ras association domain family member 9 ENCODES a protein that exhibits enzyme binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN intracellular transport (ortholog); FOUND IN cytosol (ortholog); endosome (ortholog); recycling endosome (ortholog) NW_004955405 23677319 23711542 - 102006866 AGCD01005133;AGCD01005134;GBDI01327913;XM_005374413 XP_005374470 MODEL 8916737 protein-coding LOC102015691 transcriptional activator protein Pur-beta-like NW_004955406 7173526 7174308 - 102015691 AGCD01005767;XM_005375453 XP_005375510 MODEL 8702256 pseudo LOC102006994 cytochrome c oxidase subunit 7A2, mitochondrial pseudogene NW_004955412 10686073 10686348 + 102006994 AGCD01012776 MODEL 150537110 snorna SNORD72 small nucleolar RNA, C/D box 72 8923267 protein-coding LOC102005563 chromosome unknown open reading frame, human C5orf52 NW_004955455 4906038 4911269 + 102005563 AGCD01045705;GBDF01215498;XM_013520307 XP_013375761 MODEL 8909408 trna Trnaa-ugc transfer RNA alanine (anticodon UGC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978816 AGCD01006174;AGCD01008468;AGCD01026910;AGCD01041021;AGCD01044158;AGCD01045001;AGCD01050627;AGCD01050630;AGCD01051583;AGCD01057078;AGCD01057309;AGCD01064062;AGCD01069830 MODEL 39132537 snorna SNORA70 Small nucleolar RNA SNORA70 8798820 protein-coding Plcb4 phospholipase C beta 4 ENCODES a protein that exhibits mitogen-activated protein kinase binding (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); negative regulation of potassium ion transport (ortholog); phospholipase C-activating endothelin receptor signaling pathway (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH ALAGILLE SYNDROME 1 (ortholog); Auriculocondylar Syndrome (ortholog); Auriculocondylar Syndrome 1 (ortholog); FOUND IN dendrite (ortholog); glutamatergic synapse (ortholog); nucleus (ortholog) NW_004955415 19108120 19462084 + 102021754 AGCD01016463;AGCD01016464;AGCD01016465;AGCD01016466;AGCD01016467;AGCD01016468;AGCD01016469;AGCD01016470;GBCE01136647;JN633115;XM_005380864;XM_005380865;XM_005380866;XM_013512269;XM_013512270;XM_013512271 XP_005380921;XP_005380922;XP_005380923;XP_013367723;XP_013367724;XP_013367725 MODEL 8774616 protein-coding P3h3 prolyl 3-hydroxylase 3 INVOLVED IN collagen biosynthetic process (ortholog); negative regulation of cell population proliferation (ortholog); peptidyl-lysine hydroxylation (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); Klippel-Feil syndrome 3 (ortholog); FOUND IN catalytic complex (ortholog) NW_004955413 4429558 4440602 + 102015397 AGCD01013614;AGCD01013615;GBDJ01018581;GBDK01194544;XM_013511317 XP_013366771 MODEL 8784605 protein-coding Rem1 RRAD and GEM like GTPase 1 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel (ortholog); regulation of skeletal muscle contraction by calcium ion signaling (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); FOUND IN I band (ortholog); T-tubule (ortholog) NW_004955422 29434477 29443172 - 102021886 AGCD01023394;GBDK01342980;XM_005384913 XP_005384970 MODEL 8842099 protein-coding LOC102003757 olfactory receptor 11L1-like NW_004955473 3769632 3770567 + 102003757 AGCD01053938;XM_005401224 XP_005401281 MODEL 8720435 ncrna LOC102010374 uncharacterized LOC102010374 NW_004955487 1473174 1486730 + 102010374 AGCD01059246;GBDF01209774;XR_263982 MODEL 8827310 protein-coding Tsku tsukushi, small leucine rich proteoglycan ENCODES a protein that exhibits transforming growth factor beta binding (ortholog); INVOLVED IN anterior commissure morphogenesis (ortholog); camera-type eye development (ortholog); cholesterol efflux (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN extracellular space (ortholog) NW_004955414 15166349 15178284 - 102013919 AGCD01015181;GBBH01001334;XM_005379848;XM_005379849 XP_005379905;XP_005379906 MODEL 9050425 ncrna LOC102009632 uncharacterized LOC102009632 NW_004955427 7305557 7312900 - 102009632 AGCD01027048;GBDF01114554;XR_261237 MODEL 9020705 ncrna LOC102008492 uncharacterized LOC102008492 NW_004955405 32452517 32475010 - 102008492 AGCD01005333;GBDJ01347641;XR_259420 MODEL 10078125 ncrna LOC106147064 uncharacterized LOC106147064 NW_004955514 5615595 5618348 + 106147064 AGCD01067157;GBCQ01120175;XR_001231776;XR_001231777;XR_001231778 MODEL 8751649 protein-coding Srsf11 serine and arginine rich splicing factor 11 ENCODES a protein that exhibits identical protein binding (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); intellectual disability (ortholog); myelodysplastic syndrome (ortholog); FOUND IN nuclear speck (ortholog) NW_004955423 21669925 21706260 - 102007445 AGCD01023946;AGCD01023947;GBBH01032130;GBCQ01062255;XM_013514400;XM_013514401;XM_013514402 XP_013369854;XP_013369855;XP_013369856 MODEL 8813230 protein-coding Rin3 Ras and Rab interactor 3 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN negative regulation of mast cell chemotaxis (ortholog); negative regulation of receptor internalization (ortholog); regulation of vesicle size (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); lung adenocarcinoma (ortholog); Paget's disease of bone (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955438 14777866 14898572 + 102027340 AGCD01035350;AGCD01035351;AGCD01035352;AGCD01035353;AGCD01035354;GBDF01041022;GBDJ01173811;XM_013517215 XP_013372669 MODEL 8756615 protein-coding Slc66a2 solute carrier family 66 member 2 ASSOCIATED WITH Burn-McKeown syndrome (ortholog); chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog) NW_004955402 63035932 63073981 - 102027031 AGCD01001653;AGCD01001654;GBDJ01133639;XM_005373118;XM_005373119;XM_005373120;XM_013511651 XP_005373175;XP_005373176;XP_005373177;XP_013367105 MODEL 9028754 protein-coding Rabl2b RAB, member of RAS oncogene family like 2B ENCODES a protein that exhibits GTP binding (ortholog); INVOLVED IN cilium assembly (ortholog); flagellated sperm motility (ortholog); intraciliary transport (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); FOUND IN centriole (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955413 33738999 33756374 - 102009705 AGCD01014688;AGCD01014689;GBCQ01155529;XM_005379599;XM_005379600;XM_013511655;XM_013511656 XP_005379656;XP_005379657;XP_013367109;XP_013367110 MODEL 8730291 protein-coding LOC102017609 RIMS-binding protein 3A-like NW_004955442 17581675 17586967 + 102017609 AGCD01037968;GBDF01001981;XM_005391709 XP_005391766 MODEL 8891795 protein-coding Ppargc1a PPARG coactivator 1 alpha ENCODES a protein that exhibits alpha-tubulin binding (ortholog); chromatin binding (ortholog); chromatin DNA binding (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); adipose tissue development (ortholog); androgen metabolic process (ortholog); PARTICIPATES IN aldosterone signaling pathway; mTOR signaling pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); acute kidney failure (ortholog); age related macular degeneration (ortholog); FOUND IN apical dendrite (ortholog); cytosol (ortholog); cytosolic ribosome (ortholog) NW_004955480 543397 1188376 + 102026424 AGCD01056582;AGCD01056583;AGCD01056584;AGCD01056585;AGCD01056586;AGCD01056587;AGCD01056588;AGCD01056589;AGCD01056590;AGCD01056591;AGCD01056592;GBCQ01054630;XM_005402462;XM_005402463;XM_005402464;XM_013503332 XP_005402519;XP_005402520;XP_005402521;XP_013358786 MODEL 8775433 pseudo LOC102024447 acidic leucine-rich nuclear phosphoprotein 32 family member E pseudogene NW_004955414 22245541 22246767 + 102024447 AGCD01015449 MODEL 8897736 ncrna LOC102007002 uncharacterized LOC102007002 NW_004955470 2465067 2474365 - 102007002 AGCD01052678;GBDF01193194;XR_001237015;XR_001237016 MODEL 8860921 protein-coding Pik3ap1 phosphoinositide-3-kinase adaptor protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol 3-kinase regulatory subunit binding (ortholog); INVOLVED IN negative regulation of toll-like receptor signaling pathway (ortholog); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); positive regulation of toll-like receptor signaling pathway (ortholog); ASSOCIATED WITH myoclonic-atonic epilepsy (ortholog); West syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955507 2805782 2918664 - 102018116 AGCD01065594;AGCD01065595;AGCD01065596;GBBH01001766;XM_005407578;XM_005407579;XM_013506162;XM_013506163;XM_013506164 XP_005407635;XP_005407636;XP_013361616;XP_013361617;XP_013361618 MODEL 8958249 pseudo LOC102021677 40S ribosomal protein S6 pseudogene NW_004955422 2919897 2921786 - 102021677 AGCD01022495 MODEL 8877323 protein-coding LOC102015695 olfactory receptor 10A7 NW_004955458 2359659 2360621 + 102015695 AGCD01047227;XM_005397494 XP_005397551 MODEL 8752660 protein-coding Bud23 BUD23 rRNA methyltransferase and ribosome maturation factor ENCODES a protein that exhibits protein heterodimerization activity (ortholog); rRNA (guanine) methyltransferase activity (ortholog); INVOLVED IN positive regulation of rRNA processing (ortholog); rRNA (guanine-N7)-methylation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); intestinal volvulus (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955456 14047409 14057483 - 102024647 AGCD01046632;GBBH01060290;XM_005396771 XP_005396828 MODEL 8848377 protein-coding LOC102017611 natural cytotoxicity triggering receptor 1-like NW_004955567 1860919 1864038 - 102017611 AGCD01074494;AGCD01074495;GBDI01309508;GBDK01092488;XM_005413395 XP_005413452 MODEL 8750141 protein-coding Tkt transketolase ENCODES a protein that exhibits calcium ion binding (ortholog); carbohydrate binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN glyceraldehyde-3-phosphate biosynthetic process (ortholog); pentose-phosphate shunt (ortholog); pentose-phosphate shunt, non-oxidative branch (ortholog); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - non-oxidative phase; ribose 5-phosphate isomerase deficiency pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum membrane (ortholog); nuclear body (ortholog) NW_004955430 3178830 3193241 - 102029887 AGCD01029194;GBCE01001144;GBDF01082121;XM_005387366 XP_005387423 MODEL 8792442 protein-coding LOC102011124 olfactory receptor 2K2 NW_004955419 15925491 15926438 + 102011124 AGCD01020094;XM_013513143 XP_013368597 MODEL 8763197 protein-coding LOC102023391 trace amine-associated receptor 4-like NW_004955436 13158822 13159865 - 102023391 AGCD01033854;XM_005389214 XP_005389271 MODEL 8723060 protein-coding Rtp3 receptor transporter protein 3 INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); protein targeting to membrane (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); hepatocellular carcinoma (ortholog); Liver Neoplasms (ortholog); FOUND IN cytoplasm (ortholog) NW_004955420 25545752 25550044 - 102025364 AGCD01021365;GBDK01129519;XM_005383440;XM_005383441;XM_005383442;XM_013513589;XM_013513590 XP_005383497;XP_005383498;XP_005383499;XP_013369043;XP_013369044 MODEL 8708424 protein-coding Wdr76 WD repeat domain 76 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN DNA damage response (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); hepatocellular carcinoma (ortholog); FOUND IN heterochromatin (ortholog); nucleus (ortholog); site of DNA damage (ortholog) NW_004955416 10280112 10337963 + 102015196 AGCD01017129;AGCD01017130;AGCD01017131;AGCD01017132;AGCD01017133;AGCD01017134;AGCD01017135;GBDF01163138;XM_005381415;XM_013512615;XM_013512616;XM_013512617 XP_005381472;XP_013368069;XP_013368070;XP_013368071 MODEL 8772054 protein-coding Sod3 superoxide dismutase 3 ENCODES a protein that exhibits molecular adaptor activity (ortholog); superoxide dismutase activity (ortholog); INVOLVED IN blood vessel diameter maintenance (ortholog); response to copper ion (ortholog); response to hypoxia (ortholog); PARTICIPATES IN cardiovascular system disease pathway; diabetes mellitus pathway; ASSOCIATED WITH brain ischemia (ortholog); Chemical and Drug Induced Liver Injury (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular space (ortholog) NW_004955480 257716 263149 - 102023262 AGCD01056580;AGCD01056581;GBBH01033040;GBCC01000175;XM_013503333 XP_013358787 MODEL 10203566 ncrna LOC106149899 uncharacterized LOC106149899 NW_004955456 16166475 16176491 + 106149899 AGCD01046692;AGCD01046693;XR_001236365 MODEL 8797513 ncrna LOC102006617 uncharacterized LOC102006617 NW_004955554 279370 284309 - 102006617 AGCD01072943;XR_264944 MODEL 8856439 protein-coding Slc28a2 solute carrier family 28 member 2 ENCODES a protein that exhibits neurotransmitter transmembrane transporter activity (ortholog); nucleoside transmembrane transporter activity (ortholog); nucleoside:sodium symporter activity (ortholog); INVOLVED IN adenosine transport (ortholog); inosine transport (ortholog); neurotransmitter transport (ortholog); PARTICIPATES IN azathioprine pharmacodynamics pathway; mercaptopurine pharmacodynamics pathway; mercaptopurine pharmacokinetics pathway; ASSOCIATED WITH AGAT deficiency (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN apicolateral plasma membrane (ortholog); brush border membrane (ortholog); coated vesicle (ortholog) NW_004955409 8145723 8175256 - 102022678 AGCD01009382;GBDK01394240;XM_005376738;XR_001232515 XP_005376795 MODEL 9061402 protein-coding P3h4 prolyl 3-hydroxylase family member 4 (inactive) INVOLVED IN bone remodeling (ortholog); collagen biosynthetic process (ortholog); collagen fibril organization (ortholog); FOUND IN catalytic complex (ortholog); endoplasmic reticulum (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955451 16020101 16024063 - 102007493 AGCD01043647;GBDF01119661;GBDF01119662;XM_013519276 XP_013374730 MODEL 8706749 protein-coding Prpf8 pre-mRNA processing factor 8 ENCODES a protein that exhibits K63-linked polyubiquitin modification-dependent protein binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to tumor necrosis factor (ortholog); mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; spliceosome pathway; ASSOCIATED WITH Developmental Disease (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955481 1499634 1530670 + 102017981 AGCD01056833;AGCD01056834;GBDF01002836;XM_005402612 XP_005402669 MODEL 39133349 snrna U4 U4 spliceosomal RNA 8962076 protein-coding Lin7c lin-7 homolog C, crumbs cell polarity complex component ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); L27 domain binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN morphogenesis of an epithelial sheet (ortholog); neurotransmitter secretion (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955476 6650539 6658811 - 102016379 AGCD01055339;GBDF01088577;XM_005401750 XP_005401807 MODEL 8706358 protein-coding Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 ENCODES a protein that exhibits pyruvate dehydrogenase (acetyl-transferring) activity (ortholog); pyruvate dehydrogenase (NAD+) activity (ortholog); pyruvate dehydrogenase activity (ortholog); INVOLVED IN pyruvate decarboxylation to acetyl-CoA (ortholog); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; Leigh disease pathway; ASSOCIATED WITH autistic disorder (ortholog); Coffin-Lowry syndrome (ortholog); developmental and epileptic encephalopathy 2 (ortholog); FOUND IN catalytic complex (ortholog); mitochondrion (ortholog); nucleolus (ortholog) NW_004955586 98492 114927 - 102005758 AGCD01076020;AGCD01076021;GBBH01166354;XM_005414433 XP_005414490 MODEL 8920570 ncrna LOC102019194 uncharacterized LOC102019194 NW_004955513 2803458 2806011 + 102019194 AGCD01066890;GBDK01230384;XR_001231760;XR_264459 MODEL 39132935 snorna SNORD73 Small nucleolar RNA SNORD73 8921784 protein-coding Ndrg4 NDRG family member 4 INVOLVED IN cell migration involved in heart development (ortholog); negative regulation of platelet-derived growth factor receptor signaling pathway (ortholog); negative regulation of smooth muscle cell migration (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell projection membrane (ortholog); cytoplasm (ortholog) NW_004955433 15914884 15933000 + 102012889 AGCD01031775;AGCD01031776;GBCQ01003722;XM_005388444;XM_005388445;XM_013516126 XP_005388501;XP_005388502;XP_013371580 MODEL 8907434 protein-coding Setbp1 SET binding protein 1 ASSOCIATED WITH atrial heart septal defect (ortholog); atypical chronic myeloid leukemia, BCR-ABL1 negative (ortholog); autosomal dominant intellectual developmental disorder 29 (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955402 30380346 30738869 + 102026697 AGCD01000770;AGCD01000771;AGCD01000772;AGCD01000773;AGCD01000774;AGCD01000775;AGCD01000776;AGCD01000777;AGCD01000778;GBCE01116826;XM_005373166 XP_005373223 MODEL 8743600 ncrna LOC102011960 uncharacterized LOC102011960 NW_004955459 5331828 5338432 - 102011960 AGCD01048044;XR_263016 MODEL 8815275 pseudo LOC102019195 60S ribosomal protein L23a pseudogene NW_004955515 3451273 3452933 - 102019195 AGCD01067286 MODEL 8953878 protein-coding Pgam5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN necroptotic process (ortholog); negative regulation of cold-induced thermogenesis (ortholog); PARTICIPATES IN mitochondrial autophagy pathway; nuclear factor, erythroid 2 like 2 signaling pathway; FOUND IN mitochondrion (ortholog) NW_004955482 356863 363666 - 102017876 AGCD01057171;GBDJ01356955;XM_005402943;XM_005402944;XM_013503641 XP_005403000;XP_005403001;XP_013359095 MODEL 8913282 protein-coding LOC102007003 ubiquilin-3 NW_004955414 21412848 21415565 - 102007003 AGCD01015418;GBDF01007353;XM_005380091 XP_005380148 MODEL 8763580 protein-coding Bud31 BUD31 homolog ENCODES a protein that exhibits nuclear receptor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); schistosomiasis (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); microtubule cytoskeleton (ortholog) NW_004955460 15083472 15092217 + 102009584 AGCD01048768;GBDF01047466;XM_005397944;XM_005397945 XP_005398001;XP_005398002 MODEL 8712270 ncrna LOC102023395 uncharacterized LOC102023395 NW_004955437 3132934 3153018 - 102023395 AGCD01034298;AGCD01034299;GBDI01326354;XR_001235053 MODEL 8773622 protein-coding LOC102019201 olfactory receptor 2D2-like NW_004955537 2630803 2631741 - 102019201 AGCD01070933;XM_005410628 XP_005410685 MODEL 8714015 protein-coding LOC102009633 chromosome unknown open reading frame, human C17orf62 INVOLVED IN innate immune response (ortholog); respiratory burst after phagocytosis (ortholog); ASSOCIATED WITH autosomal recessive chronic granulomatous disease 5 (ortholog); generalized epilepsy (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955506 697091 702900 + 102009633 AGCD01065234;GBCQ01009071;XM_005407199;XM_005407201;XM_005407202;XM_013506085;XM_013506086 XP_005407256;XP_005407258;XP_005407259;XP_013361539;XP_013361540 MODEL 8791056 protein-coding Pbk PDZ binding kinase ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to UV (ortholog); negative regulation of inflammatory response (ortholog); negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN nucleus (ortholog) NW_004955403 50332167 50353147 - 102009245 AGCD01002965;AGCD01002966;GBDF01050265;XM_005373758;XM_013514298;XM_013514300;XM_013514306 XP_005373815;XP_013369752;XP_013369754;XP_013369760 MODEL 10356932 pseudo LOC106147065 calcium-binding mitochondrial carrier protein Aralar1 pseudogene NW_004955408 32718391 32718634 - 106147065 AGCD01008852 MODEL 8957169 protein-coding LOC102008496 glutathione S-transferase theta-1 NW_004955455 8324748 8336051 - 102008496 AGCD01045886;AGCD01045887;GBDI01296088;XM_005396409 XP_005396466 MODEL 8950746 pseudo LOC102010742 pre-mRNA-splicing factor RBM22 pseudogene NW_004955444 6844758 6848013 + 102010742 AGCD01038875 MODEL 8869605 protein-coding Pnoc prepronociceptin ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); female pregnancy (ortholog); neuron-neuron synaptic transmission (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); fetal alcohol spectrum disorder (ortholog); FOUND IN synaptic membrane (ortholog) NW_004955403 50735567 50755892 + 102012392 AGCD01002969;GBDF01284017;XM_005373768;XM_005373769;XM_005373770 XP_005373825;XP_005373826;XP_005373827 MODEL 8719062 protein-coding Slc66a3 solute carrier family 66 member 3 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Liver Neoplasms (ortholog); schizophrenia (ortholog) NW_004955487 5848723 5855425 + 102005382 AGCD01059348;GBCE01054645;XM_005404424 XP_005404481 MODEL 8705219 pseudo LOC102018738 reactive oxygen species modulator 1 pseudogene NW_004955493 7585489 7586094 - 102018738 AGCD01061202;XM_005405270 MODEL 8993067 protein-coding Slc28a3 solute carrier family 28 member 3 ENCODES a protein that exhibits purine-specific nucleoside:sodium symporter activity (ortholog); pyrimidine- and adenosine-specific:sodium symporter activity (ortholog); uridine transmembrane transporter activity (ortholog); INVOLVED IN nucleoside transmembrane transport (ortholog); purine nucleoside transmembrane transport (ortholog); pyrimidine nucleoside transport (ortholog); PARTICIPATES IN azathioprine pharmacodynamics pathway; gemcitabine pharmacodynamics pathway; gemcitabine pharmacokinetics pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); FOUND IN brush border membrane (ortholog) NW_004955432 2892594 2948196 + 102003169 AGCD01030621;GBBH01011350;XM_013516020;XM_013516021;XM_013516022 XP_013371474;XP_013371475;XP_013371476 MODEL 8830807 ncrna LOC102019204 uncharacterized LOC102019204 NW_004955439 6299763 6305652 - 102019204 AGCD01035750;GBDF01188259;XR_261973 MODEL 8950800 protein-coding LOC102012744 cleavage stimulation factor subunit 2 tau variant-like NW_004955462 1470966 1474745 + 102012744 AGCD01049120;XM_013521365 XP_013376819 MODEL 39132550 snorna SNORA70 Small nucleolar RNA SNORA70 8710156 pseudo LOC102021679 zinc finger CCHC domain-containing protein 7-like NW_004955492 3567660 3571346 + 102021679 AGCD01060698 MODEL 9055104 ncrna LOC102015696 uncharacterized LOC102015696 NW_004955409 6044092 6050179 + 102015696 AGCD01009329;GBDF01110555;XR_001232625;XR_259756 MODEL 8724600 protein-coding LOC102008498 interferon-induced GTP-binding protein Mx2-like NW_004955407 35275551 35296838 - 102008498 AGCD01007736;GBBH01139527;XM_005375727;XM_013504510 XP_005375784;XP_013359964 MODEL 9047459 protein-coding Smim10l1 small integral membrane protein 10 like 1 FOUND IN mitochondrion (ortholog) NW_004955413 8350480 8353727 + 102011524 AGCD01013859;GBCE01075120;XM_005378947 XP_005379004 MODEL 8933402 protein-coding Rtp4 receptor transporter protein 4 INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); protein targeting to membrane (ortholog); ASSOCIATED WITH Human Influenza (ortholog); schizophrenia (ortholog); FOUND IN cytoplasm (ortholog) NW_004955420 20435924 20459440 - 102028423 AGCD01021092;XM_013513337 XP_013368791 MODEL 9026258 ncrna LOC102021680 uncharacterized LOC102021680 NW_004955422 20177741 20191497 - 102021680 AGCD01023068;GBDF01306760;XR_001234025;XR_001234026;XR_001234027;XR_001234028 MODEL 9024250 protein-coding Srsf12 serine and arginine rich splicing factor 12 INVOLVED IN mRNA 5'-splice site recognition (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway NW_004955411 15851482 15918864 - 102017108 AGCD01011954;AGCD01011955;AGCD01011956;AGCD01011957;AGCD01011958;AGCD01011959;GBDF01042758;XM_013510715 XP_013366169 MODEL 9013697 protein-coding Wdr77 WD repeat domain 77 ENCODES a protein that exhibits methyl-CpG binding (ortholog); transcription coactivator activity (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN epithelial cell proliferation involved in prostate gland development (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of epithelial cell proliferation involved in prostate gland development (ortholog); ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN Cul4B-RING E3 ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955435 14929202 14940439 - 102027005 AGCD01033258;GBDF01183170;XM_005388949;XM_013516496 XP_005389006;XP_013371950 MODEL 9010756 protein-coding Ring1 ring finger protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); ubiquitin-protein transferase activator activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); camera-type eye morphogenesis (ortholog); chromatin organization (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); MHC class I deficiency (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955437 1782156 1785811 + 102029117 AGCD01034234;GBBH01001970;GBDK01002559;XM_005389478 XP_005389535 MODEL 10194803 ncrna LOC106149900 uncharacterized LOC106149900 NW_004955456 569714 581804 - 106149900 AGCD01046208;GBDJ01119069;XR_001236366;XR_001236367 MODEL 8920677 protein-coding Rabl3 RAB, member of RAS oncogene family like 3 ENCODES a protein that exhibits GTP binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN B cell differentiation (ortholog); natural killer cell differentiation (ortholog); protein stabilization (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); pancreatic cancer (ortholog); Primary Lymphedema with Myelodysplasia (ortholog) NW_004955427 20204901 20242242 - 102026552 AGCD01027394;GBDK01170275;XM_005386473;XM_005386474;XM_005386475 XP_005386530;XP_005386531;XP_005386532 MODEL 8906200 protein-coding Raver1 ribonucleoprotein, PTB binding 1 ASSOCIATED WITH familial hypercholesterolemia (ortholog); genetic disease (ortholog); immunodeficiency 35 (ortholog) NW_004955495 1594864 1609251 - 102003563 AGCD01061704;AGCD01061705;GBCE01008151;XM_005405591;XM_013505162;XM_013505163;XM_013505164;XM_013505165 XP_005405648;XP_013360616;XP_013360617;XP_013360618;XP_013360619 MODEL 8733024 protein-coding LOC102011570 olfactory receptor 10AG1-like NW_004955511 924080 925039 - 102011570 AGCD01066346;XM_005408218 XP_005408275 MODEL 39133350 snrna U4 U4 spliceosomal RNA 9066203 protein-coding LOC102009638 olfactory receptor 5M11-like NW_004955511 1723110 1724093 + 102009638 AGCD01066377;XM_005407974 XP_005408031 MODEL 9032996 pseudo LOC102010378 probable ATP-dependent RNA helicase DDX41 pseudogene NW_004955422 11267452 11268307 - 102010378 AGCD01022753 MODEL 9035318 ncrna LOC102011962 uncharacterized LOC102011962 NW_004955410 25402864 25406681 - 102011962 AGCD01011152;GBDF01041224;XR_259864 MODEL 8775674 protein-coding LOC102008105 translation initiation factor IF-2-like NW_004955481 3628568 3637628 - 102008105 AGCD01056909;GBDI01140316;XM_005402923 XP_005402980 MODEL 39132561 snorna SNORA70 Small nucleolar RNA SNORA70 8707158 ncrna LOC102006623 uncharacterized LOC102006623 NW_004955563 2035807 2036366 + 102006623 AGCD01074168;GBDF01050491;XR_265019 MODEL 8968137 pseudo LOC102008500 serine/threonine-protein phosphatase 4 regulatory subunit 2-like NW_004955407 23016972 23161621 + 102008500 AGCD01007411;AGCD01007412;AGCD01007413;AGCD01007414;AGCD01007415 MODEL 8930943 protein-coding Pwp1 PWP1 homolog, endonuclein ENCODES a protein that exhibits histone chaperone activity (ortholog); histone H4K20me3 reader activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of stem cell differentiation (ortholog); positive regulation of transcription of nucleolar large rRNA by RNA polymerase I (ortholog); FOUND IN Golgi apparatus (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955405 41314978 41329988 + 102027711 AGCD01005546;AGCD01005547;GBDF01048521;XM_005374640 XP_005374697 MODEL 8848615 protein-coding Psrc1 proline and serine rich coiled-coil 1 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN microtubule bundle formation (ortholog); mitotic metaphase chromosome alignment (ortholog); negative regulation of cell growth (ortholog); ASSOCIATED WITH autistic disorder (ortholog); coronary artery disease (ortholog); hereditary spastic paraplegia 63 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); microtubule cytoskeleton (ortholog) NW_004955435 12697179 12702021 - 102025719 AGCD01033162;GBDK01264620;XM_013516446;XM_013516447;XM_013516448;XM_013516449;XM_013516450;XM_013516451;XM_013516452;XM_013516453 XP_013371900;XP_013371901;XP_013371902;XP_013371903;XP_013371904;XP_013371905;XP_013371906;XP_013371907 MODEL 8986999 gene LOC102015697 T-cell receptor alpha chain C region-like NW_004955409 37699401 38540341 - 102015697 AGCD01010533;AGCD01010534;AGCD01010535;AGCD01010536;AGCD01010537;AGCD01010538;AGCD01010539;AGCD01010540;AGCD01010541;AGCD01010542;AGCD01010543;AGCD01010544;AGCD01010545;AGCD01010546;AGCD01010547;AGCD01010548;AGCD01010549;AGCD01010550;AGCD01010551;AGCD01010552;AGCD01010553;AGCD01010554;AGCD01010555;AGCD01010556;AGCD01010557;AGCD01010558;AGCD01010559;AGCD01010560;XM_005377133 MODEL 8996777 protein-coding P4ha1 prolyl 4-hydroxylase subunit alpha 1 ENCODES a protein that exhibits identical protein binding (ortholog); procollagen-proline 4-dioxygenase activity (ortholog); INVOLVED IN collagen fibril organization (ortholog); peptidyl-proline hydroxylation to 4-hydroxy-L-proline (ortholog); FOUND IN endoplasmic reticulum (ortholog); intracellular membrane-bounded organelle (ortholog); mitochondrion (ortholog) NW_004955437 18604525 18668800 + 102023742 AGCD01034805;AGCD01034806;AGCD01034807;GBDK01154223;XM_005389997;XM_005389998;XM_013516757 XP_005390054;XP_005390055;XP_013372211 MODEL 8832126 pseudo LOC102005565 histone-binding protein RBBP4-B-like NW_004955407 19026615 19027887 - 102005565 AGCD01007294 MODEL 9022207 protein-coding Bysl bystin like INVOLVED IN blastocyst formation (ortholog); cellular response to forskolin (ortholog); cellular response to growth factor stimulus (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH Brain Injuries (ortholog); infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN apical part of cell (ortholog); cell projection (ortholog); chromosome (ortholog) NW_004955437 8257081 8266627 + 102019200 AGCD01034483;GBDF01090288;XM_005389708 XP_005389765 MODEL 39131516 protein-coding SRSF12 serine and arginine rich splicing factor 12 8935851 protein-coding Pdha2 pyruvate dehydrogenase E1 subunit alpha 2 ENCODES a protein that exhibits pyruvate dehydrogenase (acetyl-transferring) activity (ortholog); pyruvate dehydrogenase (NAD+) activity (ortholog); INVOLVED IN pyruvate decarboxylation to acetyl-CoA (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH azoospermia (ortholog); spermatogenic failure 1 (ortholog); spermatogenic failure 70 (ortholog); FOUND IN mitochondrion (ortholog); nucleolus (ortholog); pyruvate dehydrogenase complex (ortholog) NW_004955405 6383088 6383946 + 102016014 AGCD01004696;GBDF01011264;XM_005374677 XP_005374734 MODEL 8963721 protein-coding LOC102024449 olfactory receptor 52R1 ASSOCIATED WITH delta beta-thalassemia (ortholog) NW_004955414 20381741 20382694 - 102024449 AGCD01015371;XM_005380472 XP_005380529 MODEL 39132934 snorna SNORD73 Small nucleolar RNA SNORD73 8794290 protein-coding Ppargc1b PPARG coactivator 1 beta ENCODES a protein that exhibits AF-2 domain binding (ortholog); nuclear estrogen receptor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN actin filament organization (ortholog); bone trabecula formation (ortholog); cellular response to reactive oxygen species (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Breast Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN cytosol (ortholog); mediator complex (ortholog); nucleoplasm (ortholog) NW_004955415 4638057 4756885 - 102020656 AGCD01015976;AGCD01015977;AGCD01015978;AGCD01015979;AGCD01015980;GBCB01075411;XM_005380593;XM_013512327;XM_013512328 XP_005380650;XP_013367781;XP_013367782 MODEL 9011051 pseudo LOC102011574 polyadenylate-binding protein 1 pseudogene NW_004955516 4984024 4988135 + 102011574 AGCD01067543 MODEL 9034662 protein-coding Plcd1 phospholipase C delta 1 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); enzyme binding (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to calcium ion (ortholog); G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN G protein mediated signaling pathway; ASSOCIATED WITH alopecia (ortholog); Alzheimer's disease (ortholog); Brugada syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial membrane (ortholog) NW_004955421 4856366 4880309 - 102012763 AGCD01021703;AGCD01021704;GBCE01115444;XM_005383723;XM_005383724;XM_005383725 XP_005383780;XP_005383781;XP_005383782 MODEL 8997702 protein-coding Pnp purine nucleoside phosphorylase ENCODES a protein that exhibits identical protein binding (ortholog); nucleoside binding (ortholog); phosphate ion binding (ortholog); INVOLVED IN allantoin metabolic process (ortholog); dAMP catabolic process (ortholog); deoxyadenosine catabolic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955550 1290816 1299553 + 102026162 AGCD01072560;GBCE01002066;XM_005412065 XP_005412122 MODEL 8750346 protein-coding LOC102009639 BBSome-interacting protein 1-like NW_004955430 6423139 6423588 - 102009639 AGCD01029292;GBCC01033208;XM_005387391;XM_013515616 XP_005387448;XP_013371070 MODEL 8998724 protein-coding Raver2 ribonucleoprotein, PTB binding 2 ASSOCIATED WITH congenital disorder of glycosylation It (ortholog); intellectual disability (ortholog); FOUND IN nucleus (ortholog) NW_004955423 25583650 25626925 - 102007246 AGCD01024081;AGCD01024082;GBBH01084470;XM_005385370 XP_005385427 MODEL 8872178 pseudo LOC102012748 mothers against decapentaplegic homolog 5 pseudogene NW_004955412 6157467 6159343 + 102012748 AGCD01012666 MODEL 8831095 protein-coding Bzw1 basic leucine zipper and W2 domains 1 INVOLVED IN regulation of translational initiation (ortholog); ASSOCIATED WITH melanoma (ortholog); Neurodevelopmental Disorders (ortholog); Pulmonary Arterial Hypertension (ortholog); FOUND IN cytoplasm (ortholog) NW_004955403 676384 688353 - 102003303 AGCD01001704;AGCD01001705;GBDF01009056;XM_005373238;XM_013511843 XP_005373295;XP_013367297 MODEL 9052009 ncrna LOC102010381 uncharacterized LOC102010381 NW_004955495 7993126 7997095 - 102010381 AGCD01062174;GBCQ01010353;XR_264169 MODEL 8894167 protein-coding Tktl1 transketolase like 1 ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytosol (ortholog) NW_004955580 829653 851422 + 102027129 AGCD01075625;AGCD01075626;GBDF01008565;XM_005414185 XP_005414242 MODEL 8958217 protein-coding Setd1a SET domain containing 1A, histone lysine methyltransferase ENCODES a protein that exhibits beta-catenin binding (ortholog); histone H3K4 methyltransferase activity (ortholog); RNA binding (ortholog); INVOLVED IN brain development (ortholog); positive regulation of gene expression (ortholog); positive regulation of neural precursor cell proliferation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); Developmental Disease (ortholog); dilated cardiomyopathy (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); euchromatin (ortholog) NW_004955493 7808652 7834886 + 102020131 AGCD01061227;AGCD01061228;AGCD01061229;GBCB01061270;XM_013504748 XP_013360202 MODEL 8946358 pseudo LOC102007005 etoposide-induced protein 2.4 homolog pseudogene NW_004955414 3807141 3816292 + 102007005 AGCD01014841 MODEL 8946980 ncrna LOC102011963 uncharacterized LOC102011963 NW_004955410 30060160 30071952 - 102011963 AGCD01011301;GBDF01192837;XR_259886 MODEL 8877429 protein-coding Sohlh1 spermatogenesis and oogenesis specific basic helix-loop-helix 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN cell differentiation (ortholog); oocyte differentiation (ortholog); oogenesis (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); FOUND IN cytoplasm (ortholog); male germ cell nucleus (ortholog); nucleus (ortholog) NW_004955513 4767591 4771654 + 102020830 AGCD01066939;GBDF01225167;XM_005408545 XP_005408602 MODEL 15036839 trna Trnac-aca transfer RNA cysteine (anticodon ACA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978832 8971175 protein-coding Bzw2 basic leucine zipper and W2 domains 2 INVOLVED IN regulation of translational initiation (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); congenital muscular dystrophy-dystroglycanopathy type A7 (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955410 19833008 19874647 + 102022680 AGCD01011031;GBDI01063049;XM_005377337 XP_005377394 MODEL 8978307 ncrna LOC102008501 uncharacterized LOC102008501 NW_004955457 7028448 7038296 + 102008501 AGCD01046864;GBCB01099923;XR_262927 MODEL 8802901 protein-coding Lin9 lin-9 DREAM MuvB core complex component ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955489 431063 491729 - 102010701 AGCD01059804;AGCD01059805;AGCD01059806;GBDK01263599;XM_005404493;XM_013504504;XM_013504505 XP_005404550;XP_013359958;XP_013359959 MODEL 8703224 pseudo LOC102018739 non-histone chromosomal protein HMG-14 pseudogene NW_004955422 17353812 17357226 + 102018739 AGCD01022920;AGCD01022921 MODEL 8970985 protein-coding LOC102017612 collagen alpha-1(X) chain-like NW_004955570 1578957 1598463 + 102017612 AGCD01074819;AGCD01074820;GBCE01055045;XM_005413619;XM_005413620;XM_005413621;XM_005413622;XM_005413623;XM_013509428;XM_013509429;XM_013509430;XM_013509431;XM_013509432;XM_013509433;XR_001232435;XR_001232436 XP_005413676;XP_005413677;XP_005413678;XP_005413679;XP_005413680;XP_013364882;XP_013364883;XP_013364884;XP_013364885;XP_013364886;XP_013364887 MODEL 8948582 pseudo LOC102005569 UDP-N-acetylhexosamine pyrophosphorylase pseudogene NW_004955458 8136442 8138154 - 102005569 AGCD01047600 MODEL 39131367 protein-coding C10orf143 chromosome 10 open reading frame 143 8968557 protein-coding Rem2 RRAD and GEM like GTPase 2 ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Specific Granule Deficiency (ortholog) NW_004955409 37403758 37408312 - 102030048 AGCD01010511;GBDI01226110;XM_005377113 XP_005377170 MODEL 8843085 protein-coding LOC102011127 zinc finger protein 852 NW_004955420 26958234 26960564 + 102011127 AGCD01021441;XM_013513349 XP_013368803 MODEL 8832618 protein-coding Rabl6 RAB, member RAS oncogene family like 6 ENCODES a protein that exhibits GTP binding (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955513 4904659 4923225 + 102024266 AGCD01066943;GBDI01117495;XM_005408556 XP_005408613 MODEL 8825830 protein-coding Ndst1 N-deacetylase and N-sulfotransferase 1 ENCODES a protein that exhibits deacetylase activity (ortholog); heparan sulfate N-deacetylase activity (ortholog); heparan sulfate N-sulfotransferase activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); aorta development (ortholog); cardiac septum development (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 46 (ortholog); complex cortical dysplasia with other brain malformations (ortholog); congenital diaphragmatic hernia (ortholog); FOUND IN Golgi apparatus (ortholog); trans-Golgi network membrane (ortholog) NW_004955415 4017142 4078927 - 102014771 AGCD01015963;AGCD01015964;GBCB01057787;GBDK01000782;XM_013512250;XM_013512251 XP_013367704;XP_013367705 MODEL 8936772 protein-coding Pwp2 PWP2 small subunit processome component INVOLVED IN ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cataract 9 multiple types (ortholog); developmental and epileptic encephalopathy 30 (ortholog); FOUND IN small-subunit processome (ortholog) NW_004955407 41256603 41269648 - 102029049 AGCD01007863;GBCE01009676;XM_005375872 XP_005375929 MODEL 8706948 protein-coding Pgap1 post-GPI attachment to proteins inositol deacylase 1 ENCODES a protein that exhibits deacylase activity (ortholog); INVOLVED IN anterior/posterior axis specification (ortholog); embryonic pattern specification (ortholog); forebrain regionalization (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 58 (ortholog); Cerebral Visual Impairment and Intellectual Disability (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955403 3527398 3582004 + 102025426 AGCD01001769;AGCD01001770;GBCE01082448;GBDI01167905;XM_013512108 XP_013367562 MODEL 8903454 protein-coding LOC102009640 olfactory receptor 10AG1-like NW_004955511 857241 858197 - 102009640 AGCD01066345;XM_013506363 XP_013361817 MODEL 8949870 protein-coding Rtp5 receptor transporter protein 5 (putative) ASSOCIATED WITH chromosome 2q37 deletion syndrome (ortholog); intellectual disability (ortholog) NW_004955542 40344 43885 - 102029120 AGCD01071456;XM_005411103 XP_005411160 MODEL 8865702 ncrna LOC102012752 uncharacterized LOC102012752 NW_004955469 10486414 10491430 - 102012752 AGCD01052535;GBCE01044034;XR_263446 MODEL 8809134 ncrna LOC102010382 uncharacterized LOC102010382 NW_004955424 3479982 3493499 + 102010382 AGCD01024311;GBDF01055317;XR_001234144 MODEL 8924525 pseudo LOC102010743 olfactory receptor 7G1-like NW_004955563 294341 295318 - 102010743 AGCD01074059 MODEL 8732777 protein-coding Pbld phenazine biosynthesis like protein domain containing ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN maintenance of gastrointestinal epithelium (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); ASSOCIATED WITH pre-malignant neoplasm (ortholog); FOUND IN cytoplasm (ortholog) NW_004955425 20564296 20620988 - 102005488 AGCD01025741;AGCD01025742;AGCD01025743;AGCD01025744;AGCD01025745;AGCD01025746;AGCD01025747;AGCD01025748;AGCD01025749;AGCD01025750;AGCD01025751;GBDF01221674;XM_005385984;XM_005385985;XM_005385986;XM_005385987;XM_005385988;XM_005385991;XM_013514827;XM_013514828;XM_013514829;XM_013514830 XP_005386041;XP_005386042;XP_005386043;XP_005386044;XP_005386045;XP_005386048;XP_013370281;XP_013370282;XP_013370283;XP_013370284 MODEL 8979727 protein-coding Rax retina and anterior neural fold homeobox ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN brain development (ortholog); camera-type eye development (ortholog); hypothalamus development (ortholog); ASSOCIATED WITH Anophthalmia (ortholog); Craniofacial Abnormalities (ortholog); genetic disease (ortholog) NW_004955402 43408933 43414697 - 102006190 AGCD01001072;AGCD01001073;GBDJ01056238;XM_005373175 XP_005373232 MODEL 8813619 protein-coding Wdr81 WD repeat domain 81 ENCODES a protein that exhibits K63-linked polyubiquitin modification-dependent protein binding (ortholog); phosphatidylinositol 3-kinase inhibitor activity (ortholog); INVOLVED IN aggrephagy (ortholog); early endosome to late endosome transport (ortholog); mitochondrion organization (ortholog); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); cerebellar ataxia (ortholog); cerebellar ataxia, impaired intellectual development, and dysequilibrium syndrome 2 (ortholog); FOUND IN autophagosome membrane (ortholog); cytosol (ortholog); early endosome membrane (ortholog) NW_004955481 1450127 1462564 - 102016808 AGCD01056832;AGCD01056833;GBCE01008518;XM_005402608;XM_013503510;XM_013503511 XP_005402665;XP_013358964;XP_013358965 MODEL 8730603 ncrna LOC102003758 uncharacterized LOC102003758 NW_004955415 5445231 5497596 + 102003758 AGCD01015995;GBDK01101825;XR_260270 MODEL 39133351 snrna U4 U4 spliceosomal RNA 8826665 pseudo LOC102015698 ezrin pseudogene NW_004955460 13608269 13609137 - 102015698 AGCD01048706 MODEL 9040282 protein-coding LOC102010745 zinc finger protein 20-like NW_004955569 269498 273133 + 102010745 AGCD01074571;XM_005413507 XP_005413564 MODEL 9056289 pseudo LOC102008504 nuclear receptor subfamily 5 group A member 2 pseudogene NW_004955408 668410 669063 + 102008504 AGCD01007925 MODEL 8877618 protein-coding Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 ENCODES a protein that exhibits ADP phosphatase activity (ortholog); ATP hydrolysis activity (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to interferon-alpha (ortholog); cellular response to interleukin-6 (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN basement membrane (ortholog); cell body (ortholog); cell projection membrane (ortholog) NW_004955513 5070050 5075098 - 102029650 AGCD01066953;GBDI01356592;XM_005408572;XM_005408574 XP_005408629;XP_005408631 MODEL 9037904 protein-coding LOC102024450 equatorin-like NW_004955472 7589444 7603493 + 102024450 AGCD01053624;GBDF01045098;XM_005401147;XM_013522932;XM_013522933 XP_005401204;XP_013378386;XP_013378387 MODEL 8700349 ncrna LOC102008106 uncharacterized LOC102008106 NW_004955482 4507858 4511301 + 102008106 AGCD01057294;GBDF01156183;XR_001230999 MODEL 8799976 protein-coding LOC102017615 zinc finger protein 324A NW_004955584 1087372 1099232 + 102017615 AGCD01075978;AGCD01075979;AGCD01075980;GBBH01102143;XM_005414387 XP_005414444 MODEL 8856656 ncrna LOC102003760 uncharacterized LOC102003760 NW_004955475 4403226 4412590 - 102003760 AGCD01054876;AGCD01054877;GBDK01406757;XR_001230760;XR_001230761;XR_263610 MODEL 8755780 pseudo LOC102023396 cyclin-G1 pseudogene NW_004955536 1334545 1336528 + 102023396 AGCD01070756 MODEL 39132573 snorna SNORA70 Small nucleolar RNA SNORA70 8919893 protein-coding Traip TRAF interacting protein ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN DNA damage response (ortholog); negative regulation of interferon-beta production (ortholog); negative regulation of NF-kappaB transcription factor activity (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); Dwarfism (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); site of DNA damage (ortholog) NW_004955532 1725608 1746690 - 102020483 AGCD01070200;GBDF01236147;XM_005410226 XP_005410283 MODEL 8942950 protein-coding Pnpla1 patatin like domain 1, omega-hydroxyceramide transacylase ENCODES a protein that exhibits acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); omega-hydroxyceramide transacylase activity (ortholog); structural constituent of skin epidermis (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); establishment of skin barrier (ortholog); keratinocyte differentiation (ortholog); ASSOCIATED WITH autosomal recessive congenital ichthyosis (ortholog); autosomal recessive congenital ichthyosis 10 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog) NW_004955437 4008814 4047895 + 102008889 AGCD01034359;GBCQ01173759;XM_013517129;XM_013517130 XP_013372583;XP_013372584 MODEL 8753328 protein-coding Setd1b SET domain containing 1B, histone lysine methyltransferase ENCODES a protein that exhibits histone H3K4 methyltransferase activity (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); immunodeficiency 9 (ortholog); FOUND IN cytoplasm (ortholog); histone methyltransferase complex (ortholog); nucleoplasm (ortholog) NW_004955482 6598176 6621944 - 102003135 AGCD01057403;AGCD01057404;AGCD01057405;AGCD01057406;GBCB01131998;GBDK01358092;XM_013503539 XP_013358993 MODEL 8837437 pseudo LOC102007014 40S ribosomal protein S15a pseudogene NW_004955418 14137072 14137418 + 102007014 AGCD01019064 MODEL 8814551 ncrna LOC102019205 uncharacterized LOC102019205 NW_004955441 14672459 14678221 + 102019205 AGCD01037214;GBDF01176341;XR_262080 MODEL 10247351 ncrna LOC106149901 uncharacterized LOC106149901 NW_004955456 15079998 15082331 + 106149901 AGCD01046662;GBDK01263026;XR_001236368 MODEL 8912965 protein-coding Tslp thymic stromal lymphopoietin ENCODES a protein that exhibits cytokine activity (ortholog); interleukin-7 receptor binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); cell surface receptor signaling pathway via JAK-STAT (ortholog); cytokine-mediated signaling pathway (ortholog); ASSOCIATED WITH Albuminuria (ortholog); allergic contact dermatitis (ortholog); allergic disease (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog) NW_004955418 4041529 4045534 - 102025006 AGCD01018807;XM_005382342 XP_005382399 MODEL 8983042 protein-coding Sohlh2 spermatogenesis and oogenesis specific basic helix-loop-helix 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN cell differentiation (ortholog); oocyte differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog) NW_004955431 9874783 9952044 + 102015557 AGCD01030196;AGCD01030197;AGCD01030198;AGCD01030199;GBDF01039703;XM_013515730 XP_013371184 MODEL 9054659 protein-coding P4ha2 prolyl 4-hydroxylase subunit alpha 2 ENCODES a protein that exhibits procollagen-proline 4-dioxygenase activity (ortholog); INVOLVED IN peptidyl-proline hydroxylation to 4-hydroxy-L-proline (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Myopia 25, Autosomal Dominant (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955408 3574860 3607015 - 102026833 AGCD01008066;AGCD01008067;GBDK01003510;XM_013508278;XM_013508286;XM_013508292 XP_013363732;XP_013363740;XP_013363746 MODEL 39132861 snorna SNORD79 Small nucleolar RNA SNORD79 39133352 snrna U4 U4 spliceosomal RNA 8943864 protein-coding Wdr82 WD repeat domain 82 ENCODES a protein that exhibits chromatin binding (ortholog); lncRNA binding (ortholog); INVOLVED IN gene expression (ortholog); lncRNA catabolic process (ortholog); negative regulation of DNA-templated transcription, elongation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH congenital disorder of glycosylation In (ortholog); FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); histone methyltransferase complex (ortholog) NW_004955532 3860785 3880714 - 102027900 AGCD01070302;GBDK01090445;XM_005410348 XP_005410405 MODEL 9042608 pseudo LOC102015703 40S ribosomal protein S2 pseudogene NW_004955465 1555464 1557236 + 102015703 AGCD01050340 MODEL 8960970 protein-coding Smim11 small integral membrane protein 11 ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); Familial Platelet Disorder with Associated Myeloid Malignancy (ortholog) NW_004955407 33740552 33750974 + 102026831 AGCD01007707;GBDF01195734;XM_005375701;XM_013504452 XP_005375758;XP_013359906 MODEL 9014291 pseudo LOC102008506 nucleoplasmin-3 pseudogene NW_004955409 22543962 22544416 - 102008506 AGCD01010041 MODEL 8746242 protein-coding Ndst2 N-deacetylase and N-sulfotransferase 2 ENCODES a protein that exhibits deacetylase activity (ortholog); heparan sulfate N-deacetylase activity (ortholog); heparan sulfate N-sulfotransferase activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process (ortholog); heparan sulfate proteoglycan biosynthetic process, chain elongation (ortholog); mast cell mediated immunity (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); syndromic microphthalmia 5 (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955437 18090198 18099328 + 102011044 AGCD01034774;GBDI01221071;XM_005389955;XM_013516749 XP_005390012;XP_013372203 MODEL 8724761 pseudo LOC102011964 40S ribosomal protein S3a pseudogene NW_004955410 19855730 19856950 - 102011964 AGCD01011031 MODEL 8798107 protein-coding Rinl Ras and Rab interactor like ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN endocytosis (ortholog); ASSOCIATED WITH maturity-onset diabetes of the young type 1 (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN actin cytoskeleton (ortholog); ruffle (ortholog) NW_004955468 644530 651686 + 102003642 AGCD01051719;GBDK01293890;XM_005399806;XM_005399807;XM_005399809;XM_005399810;XM_005399812;XM_013522413;XM_013522415;XM_013522416;XM_013522417 XP_005399863;XP_005399864;XP_005399866;XP_005399867;XP_005399869;XP_013377867;XP_013377869;XP_013377870;XP_013377871 MODEL 8869129 protein-coding Pwwp2a PWWP domain containing 2A ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); histone H3K36me3 reader activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); positive regulation of transcription elongation by RNA polymerase II (ortholog); regulation of transcriptional start site selection at RNA polymerase II promoter (ortholog); FOUND IN nucleus (ortholog) NW_004955408 14007982 14051149 - 102023334 AGCD01008379;AGCD01008380;GBCE01142938;XM_005376254;XM_005376255;XM_013508900;XM_013508906;XM_013508913;XM_013508924;XR_001232337;XR_001232338;XR_001232339 XP_005376311;XP_005376312;XP_013364354;XP_013364360;XP_013364367;XP_013364378 MODEL 8945117 pseudo LOC102009643 tubulin alpha-1C chain-like NW_004955515 4374447 4376136 + 102009643 AGCD01067319 MODEL 39132582 snorna SNORA70 Small nucleolar RNA SNORA70 8822172 protein-coding Pstk phosphoseryl-tRNA kinase ENCODES a protein that exhibits L-seryl-tRNA(Sec) kinase activity (ortholog); tRNA binding (ortholog); INVOLVED IN selenocysteine incorporation (ortholog); ASSOCIATED WITH 2-Methylbutyryl-CoA Dehydrogenase Deficiency (ortholog); craniosynostosis (ortholog) NW_004955477 1147596 1157755 + 102024458 AGCD01055503;GBDF01039234;XM_005401952 XP_005402009 MODEL 8791144 protein-coding LOC102012754 olfactory receptor 2D3-like NW_004955414 22588215 22589156 - 102012754 AGCD01015464;XM_005380509 XP_005380566 MODEL 9035468 protein-coding Slc29a1 solute carrier family 29 member 1 (Augustine blood group) ENCODES a protein that exhibits adenine transmembrane transporter activity (ortholog); cytidine transmembrane transporter activity (ortholog); guanine transmembrane transporter activity (ortholog); INVOLVED IN adenine transport (ortholog); adenosine transport (ortholog); cellular response to glucose stimulus (ortholog); PARTICIPATES IN azathioprine pharmacodynamics pathway; gemcitabine pharmacodynamics pathway; gemcitabine pharmacokinetics pathway; ASSOCIATED WITH alcohol dependence (ortholog); Alcohol Withdrawal Seizures (ortholog); Animal Disease Models (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955437 9850279 9862412 + 102018977 AGCD01034547;AGCD01034548;GBCE01034310;XM_005389803;XM_005389804;XM_005389805;XM_005389807 XP_005389860;XP_005389861;XP_005389862;XP_005389864 MODEL 8880619 protein-coding Rtraf RNA transcription, translation and transport factor ENCODES a protein that exhibits identical protein binding (ortholog); RNA binding (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN negative regulation of protein kinase activity (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); tRNA splicing, via endonucleolytic cleavage and ligation (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); mitotic spindle (ortholog) NW_004955409 11034815 11049400 - 102012165 AGCD01009497;AGCD01009498;AY533217;GBCB01006025;XM_005376787 AAS59420;XP_005376844 MODEL 8913280 pseudo LOC102005572 tRNA pseudouridine(38/39) synthase-like NW_004955409 17846564 17848790 + 102005572 AGCD01009800 MODEL 150537134 snorna SNORD8 small nucleolar RNA, C/D box 8 8834490 protein-coding LOC102011130 chromosome unknown open reading frame, human C20orf173 ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog) NW_004955422 25895181 25897125 + 102011130 AGCD01023269;AGCD01023270;GBDF01017778;XM_005384792 XP_005384849 MODEL 8947773 pseudo LOC102021682 ATM interactor pseudogene NW_004955422 20655541 20656652 + 102021682 AGCD01023085 MODEL 8786420 protein-coding Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 ENCODES a protein that exhibits 5'-nucleotidase activity (ortholog); nucleoside diphosphate phosphatase activity (ortholog); ribonucleoside triphosphate phosphatase activity (ortholog); INVOLVED IN nucleoside diphosphate catabolic process (ortholog); nucleoside triphosphate catabolic process (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN plasma membrane (ortholog) NW_004955420 29445252 29471024 - 102012656 AGCD01021502;AGCD01021503;AGCD01021504;GBCQ01152313;GBDF01160505;XM_005383579 XP_005383636 MODEL 9027568 pseudo LOC102024456 serine/threonine-protein kinase Kist pseudogene NW_004955475 5028388 5029292 + 102024456 AGCD01054900 MODEL 8796556 protein-coding Rac1 Rac family small GTPase 1 ENCODES a protein that exhibits ATPase binding (ortholog); enzyme binding (ortholog); G protein activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); actin filament polymerization (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; azathioprine pharmacodynamics pathway; c-Jun N-terminal kinases MAPK signaling pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 48 (ortholog); breast cancer (ortholog); Cardiomegaly (ortholog); FOUND IN actin filament (ortholog); cell cortex (ortholog); cell projection (ortholog) NW_004955460 13270159 13295562 - 102024434 AGCD01048678;AGCD01048679;AGCD01048680;GBBH01002085;GBDF01048986;XM_013521169 XP_013376623 MODEL 8747057 protein-coding LOC102015705 uncharacterized LOC102015705 NW_004955466 1072520 1075515 + 102015705 AGCD01050688;GBDF01250391;XM_005399245 XP_005399302 MODEL 8910318 ncrna LOC102008507 uncharacterized LOC102008507 NW_004955410 6953396 6959673 - 102008507 AGCD01010708;GBDF01017313;XR_259822 MODEL 8791821 pseudo LOC102010387 selenide, water dikinase 2-like NW_004955502 7355026 7356276 - 102010387 AGCD01064441 MODEL 8817428 protein-coding LOC102017617 uncharacterized LOC102017617 NW_004955402 9150459 9154214 - 102017617 AGCD01000207;GBDF01245775;XM_005373147 XP_005373204 MODEL 8862512 protein-coding Wdr83 WD repeat domain 83 INVOLVED IN inflammatory response to wounding (ortholog); mRNA splicing, via spliceosome (ortholog); neural tube closure (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); attention deficit hyperactivity disorder (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955415 31774017 31778737 + 102018387 AGCD01016697;GBDF01114913;XM_005381017 XP_005381074 MODEL 8816657 protein-coding Smim12 small integral membrane protein 12 ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN mitochondrion (ortholog) NW_004955452 12972797 12976963 - 102014003 AGCD01044376;GBBH01089725;XM_005395126;XM_005395127;XM_013519691 XP_005395183;XP_005395184;XP_013375145 MODEL 8853106 protein-coding LOC102023400 zinc finger protein 45 NW_004955555 1583300 1616003 + 102023400 AGCD01073091;AGCD01073092;GBCE01005260;XM_005412463;XM_005412464;XM_005412465;XM_005412466;XM_005412467;XM_005412470;XM_013508736;XM_013508737;XM_013508738;XM_013508739;XM_013508740;XM_013508741;XM_013508742 XP_005412520;XP_005412521;XP_005412522;XP_005412523;XP_005412524;XP_005412527;XP_013364190;XP_013364191;XP_013364192;XP_013364193;XP_013364194;XP_013364195;XP_013364196 MODEL 8723365 pseudo LOC102011967 serine-rich single-pass membrane protein 1-like NW_004955411 5417085 5417628 - 102011967 AGCD01011638 MODEL 8908862 pseudo LOC102007015 chromobox protein homolog 3 pseudogene NW_004955419 1378119 1378641 + 102007015 AGCD01019647 MODEL 39132591 snorna SNORA70 Small nucleolar RNA SNORA70 8843586 protein-coding Ppat phosphoribosyl pyrophosphate amidotransferase ENCODES a protein that exhibits amidophosphoribosyltransferase activity (ortholog); identical protein binding (ortholog); INVOLVED IN 'de novo' AMP biosynthetic process (ortholog); 'de novo' IMP biosynthetic process (ortholog); 'de novo' XMP biosynthetic process (ortholog); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; ASSOCIATED WITH congenital disorder of glycosylation type IIk (ortholog); Experimental Diabetes Mellitus (ortholog); Experimental Liver Neoplasms (ortholog) NW_004955447 14552846 14607416 + 102027586 AGCD01041014;AGCD01041015;AGCD01041016;GBDF01188418;XM_005392870;XM_005392871;XM_013518498;XM_013518499 XP_005392927;XP_005392928;XP_013373952;XP_013373953 MODEL 8965296 protein-coding Slc29a2 solute carrier family 29 member 2 ENCODES a protein that exhibits adenine transmembrane transporter activity (ortholog); cytidine transmembrane transporter activity (ortholog); guanine transmembrane transporter activity (ortholog); INVOLVED IN adenine transport (ortholog); adenosine transport (ortholog); cellular response to insulin stimulus (ortholog); PARTICIPATES IN azathioprine pharmacodynamics pathway; mercaptopurine pharmacodynamics pathway; mercaptopurine pharmacokinetics pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); congenital muscular dystrophy-dystroglycanopathy type A13 (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955422 18960862 18970312 + 102012443 AGCD01022969;GBBH01177502;XM_005384407 XP_005384464 MODEL 8881973 ncrna LOC102010746 uncharacterized LOC102010746 NW_004955446 646029 647588 + 102010746 AGCD01039946;GBDF01235337;XR_262363 MODEL 8782217 protein-coding Prph peripherin ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN intermediate filament cytoskeleton organization (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); amyotrophic lateral sclerosis type 10 (ortholog); FOUND IN terminal bouton; axon (ortholog); C-fiber (ortholog) NW_004955500 8106371 8117221 + 102016172 AGCD01063978;AGCD01063979;AGCD01063980;GBCE01007281;XM_005406695 XP_005406752 MODEL 9012176 protein-coding Pwwp2b PWWP domain containing 2B ENCODES a protein that exhibits NuRD complex binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); positive regulation of transcription elongation by RNA polymerase II (ortholog); regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); polycystic ovary syndrome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955477 10017449 10039691 + 102025789 AGCD01055689;GBDK01282478;XM_005402045;XM_005402046;XM_013503080 XP_005402102;XP_005402103;XP_013358534 MODEL 8824995 protein-coding Plcd3 phospholipase C delta 3 INVOLVED IN angiogenesis (ortholog); labyrinthine layer blood vessel development (ortholog); regulation of cell population proliferation (ortholog); PARTICIPATES IN inositol metabolic pathway; ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog) NW_004955451 17822345 17827848 - 102023864 AGCD01043774;GBBH01230083;GBCE01115432;XM_005394564 XP_005394621 MODEL 8894400 protein-coding Rttn rotatin INVOLVED IN determination of left/right symmetry (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955402 53600985 53753218 - 102005430 AGCD01001370;AGCD01001371;GBDF01281354;XM_005373054 XP_005373111 MODEL 9038430 protein-coding Tktl2 transketolase like 2 FOUND IN cytoplasm (ortholog) NW_004955403 41526329 41528591 + 102015167 AGCD01002723;GBDK01218247;XM_013515256 XP_013370710 MODEL 8704464 protein-coding Son SON DNA and RNA binding protein ENCODES a protein that exhibits RNA binding (ortholog); RS domain binding (ortholog); INVOLVED IN microtubule cytoskeleton organization (ortholog); mitotic cytokinesis (ortholog); mRNA processing (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); FOUND IN nuclear speck (ortholog) NW_004955407 32974656 33007073 + 102016237 AGCD01007692;AGCD01007693;GBDF01053041;XM_013504280;XM_013504282;XM_013504287;XM_013504291;XM_013504293 XP_013359734;XP_013359736;XP_013359741;XP_013359745;XP_013359747 MODEL 8911885 protein-coding LOC102006625 ankyrin repeat domain-containing protein 26-like NW_004955582 71374 168669 + 102006625 AGCD01075741;AGCD01075742;AGCD01075743;AGCD01075744;AGCD01075745;AGCD01075746;AGCD01075747;GBDF01000111;XM_005414285 XP_005414342 MODEL 9043035 protein-coding Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-4,5-bisphosphate 3-kinase activity (ortholog); 1-phosphatidylinositol-4-phosphate 3-kinase activity (ortholog); INVOLVED IN autophagosome organization (ortholog); cellular response to starvation (ortholog); endocytosis (ortholog); PARTICIPATES IN phosphoinositide metabolic pathway; ASSOCIATED WITH Dwarfism (ortholog); intellectual disability (ortholog); Oculoskeletodental Syndrome (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955414 31896161 31999730 - 102007989 AGCD01015764;AGCD01015765;AGCD01015766;AGCD01015767;GBDJ01180231;XM_005380376;XM_013512017 XP_005380433;XP_013367471 MODEL 8869504 pseudo LOC102008107 olfactory receptor 56-like NW_004955418 29732474 29747780 + 102008107 AGCD01019481 MODEL 8806117 protein-coding LOC102024459 arpin ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); D-2-hydroxyglutaric aciduria 2 (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog) NW_004955416 15340070 15399017 + 102024459 AGCD01017323;AGCD01017324;AGCD01017325;AGCD01017326;GBDF01308168;XM_005381538 XP_005381595 MODEL 8972837 protein-coding Ndst3 N-deacetylase and N-sulfotransferase 3 ENCODES a protein that exhibits deacetylase activity (ortholog); heparan sulfate N-deacetylase activity (ortholog); heparan sulfate N-sulfotransferase activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955428 21671432 21853492 - 102026659 AGCD01028145;AGCD01028146;AGCD01028147;AGCD01028148;AGCD01028149;AGCD01028150;AGCD01028151;AGCD01028152;AGCD01028153;AGCD01028154;GBDJ01048910;XM_005386806;XM_005386807;XM_013515341;XM_013515342;XM_013515343 XP_005386863;XP_005386864;XP_013370795;XP_013370796;XP_013370797 MODEL 8968751 pseudo LOC102008511 transmembrane protein 14A pseudogene NW_004955464 11151367 11152100 - 102008511 AGCD01050137;XR_263212 MODEL 10100645 ncrna LOC106149902 uncharacterized LOC106149902 NW_004955456 14900042 14902337 - 106149902 AGCD01046655;GBDF01013677;XR_001236370 MODEL 8782605 protein-coding Trak1 trafficking kinesin protein 1 ENCODES a protein that exhibits GABA receptor binding (ortholog); TPR domain binding (ortholog); INVOLVED IN axonal transport of mitochondrion (ortholog); dendrite morphogenesis (ortholog); endosome to lysosome transport (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); developmental and epileptic encephalopathy 68 (ortholog); genetic disease (ortholog); FOUND IN axonal growth cone (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955420 28457179 28547585 - 102003973 AGCD01021478;AGCD01021479;AGCD01021480;GBBH01163772;XM_005383550;XM_005383551;XM_005383552;XM_005383553;XM_005383562;XM_013513471;XM_013513472 XP_005383607;XP_005383608;XP_005383609;XP_005383610;XP_005383619;XP_013368925;XP_013368926 MODEL 8824622 pseudo LOC102009644 ubiquitin-40S ribosomal protein S27a pseudogene NW_004955516 2584233 2584809 - 102009644 AGCD01067462 MODEL 10235809 ncrna LOC106147066 uncharacterized LOC106147066 NW_004955514 5324731 5327152 + 106147066 AGCD01067151;GBDF01056348;XR_001231779 MODEL 8900219 protein-coding Rb1 RB transcriptional corepressor 1 ENCODES a protein that exhibits disordered domain specific binding (ortholog); DNA-binding transcription factor binding (ortholog); enzyme binding (ortholog); INVOLVED IN aortic valve morphogenesis (ortholog); apoptotic process (ortholog); cell division (ortholog); PARTICIPATES IN ceramide signaling pathway; G1/S transition pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH Acute Erythroleukemia (ortholog); acute kidney failure (ortholog); acute lymphoblastic leukemia (ortholog); FOUND IN chromatin lock complex (ortholog); cyclin/CDK positive transcription elongation factor complex (ortholog); cytoplasm (ortholog) NW_004955431 1960765 2124576 + 102016082 AGCD01029919;AGCD01029920;AGCD01029921;AGCD01029922;AGCD01029923;GBCQ01126218;XM_005387557 XP_005387614 MODEL 8756380 protein-coding Pstpip1 proline-serine-threonine phosphatase interacting protein 1 ENCODES a protein that exhibits actin binding (ortholog); identical protein binding (ortholog); protein phosphatase binding (ortholog); ASSOCIATED WITH acne (ortholog); Behcet's disease (ortholog); Bloom syndrome (ortholog); FOUND IN actomyosin contractile ring (ortholog); cleavage furrow (ortholog); cytosol (ortholog) NW_004955450 1876553 1908269 + 102019551 AGCD01042371;GBDK01231269;XM_005393478;XM_005393479;XM_005393481;XM_013519024 XP_005393535;XP_005393536;XP_005393538;XP_013374478 MODEL 8878773 protein-coding LOC102012761 peroxisomal bifunctional enzyme-like NW_004955420 22249148 22292098 + 102012761 AGCD01021191;AGCD01021192;AGCD01021193;GBBH01217378;XM_005383300 XP_005383357 MODEL 8737378 protein-coding P4ha3 prolyl 4-hydroxylase subunit alpha 3 ENCODES a protein that exhibits procollagen-proline 4-dioxygenase activity (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog) NW_004955414 17344512 17376564 + 102017003 AGCD01015240;AGCD01015241;GBBH01210975;GBCE01148338;XM_005380452 XP_005380509 MODEL 8935752 protein-coding Slc67a1 solute carrier family 67 member 1 ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN xenobiotic detoxification by transmembrane export across the plasma membrane (ortholog); xenobiotic transport (ortholog); ASSOCIATED WITH breast adenocarcinoma (ortholog); breast cancer (ortholog); Breast Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); nuclear envelope (ortholog) NW_004955422 14590588 14615898 + 102010702 AGCD01022861;GBDJ01137383;XM_005384209;XM_005384210;XM_005384211;XM_005384212;XM_013514291 XP_005384266;XP_005384267;XP_005384268;XP_005384269;XP_013369745 MODEL 39131973 snorna SNORD81 Small nucleolar RNA SNORD81 8909923 ncrna LOC102021687 uncharacterized LOC102021687 NW_004955500 6724671 6728915 + 102021687 AGCD01063892;GBDJ01218162;XR_001231489 MODEL 8850776 protein-coding LOC102010748 transmembrane protease serine 11G-like NW_004955447 4856552 4890901 + 102010748 AGCD01040735;GBDF01305458;XM_005392830 XP_005392887 MODEL 8773270 protein-coding Srsf2 serine and arginine rich splicing factor 2 ENCODES a protein that exhibits pre-mRNA binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN regulation of alternative mRNA splicing, via spliceosome (ortholog); response to vitamin E (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Animal Mammary Neoplasms (ortholog); atypical chronic myeloid leukemia, BCR-ABL1 negative (ortholog); FOUND IN cytosol (ortholog); interchromatin granule (ortholog); nuclear speck (ortholog) NW_004955506 5569280 5572164 + 102017685 AGCD01065373;AGCD01065374;GBDK01018068;XM_013506028 XP_013361482 MODEL 9033332 ncrna LOC102019210 uncharacterized LOC102019210 NW_004955443 7120644 7141367 + 102019210 AGCD01038273;GBDF01245079;XR_001235484 MODEL 8716906 ncrna LOC102018740 uncharacterized LOC102018740 NW_004955423 15350156 15352340 + 102018740 AGCD01023805;GBCB01061780;XR_260970 MODEL 8836136 protein-coding Pnpla2 patatin like domain 2, triacylglycerol lipase ENCODES a protein that exhibits acylglycerol O-acyltransferase activity (ortholog); diolein transacylation activity (ortholog); mono-olein transacylation activity (ortholog); INVOLVED IN diacylglycerol biosynthetic process (ortholog); intracellular triglyceride homeostasis (ortholog); lipid catabolic process (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); Chanarin-Dorfman syndrome (ortholog); congestive heart failure (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lipid droplet (ortholog) NW_004955476 11304660 11309755 - 102009048 AGCD01055448;AGCD01055449;GBCB01003982;GBDI01017656;XM_005401809 XP_005401866 MODEL 8965448 protein-coding LOC102015709 histone acetyltransferase p300-like NW_004955413 26801494 26828627 + 102015709 AGCD01014478;AGCD01014479;AGCD01014480;AGCD01014481;AGCD01014482;GBDF01124584;GBDK01021524;XM_005379340 XP_005379397 MODEL 8794011 ncrna LOC102011575 uncharacterized LOC102011575 NW_004955433 7112388 7165573 + 102011575 AGCD01031565;AGCD01031566;GBDF01115735;XR_001234705;XR_261564 MODEL 8897189 pseudo LOC102010388 uncharacterized LOC102010388 NW_004955503 3309922 3337412 - 102010388 AGCD01064622 MODEL 39131540 protein-coding C11orf53 chromosome 11 open reading frame 53 9066599 protein-coding Ren renin ENCODES a protein that exhibits aspartic-type endopeptidase activity (ortholog); endopeptidase activity (ortholog); insulin-like growth factor receptor binding (ortholog); INVOLVED IN amyloid-beta metabolic process (ortholog); angiotensin maturation (ortholog); cell maturation (ortholog); PARTICIPATES IN benazepril pharmacodynamics pathway; candesartan pharmacodynamics pathway; captopril pharmacodynamics pathway; ASSOCIATED WITH acute kidney failure (ortholog); Albuminuria (ortholog); anemia (ortholog); FOUND IN apical part of cell (ortholog); extracellular region (ortholog); extracellular space (ortholog) NW_004955406 40016624 40026286 - 102018155 AGCD01006651;XM_005375286 XP_005375343 MODEL 9043286 ncrna LOC102018745 uncharacterized LOC102018745 NW_004955425 3755805 3770222 - 102018745 AGCD01025296;AGCD01025297;GBDF01112248;XR_261124 MODEL 39133353 snrna U4 U4 spliceosomal RNA 8949222 trna Trnac-gca transfer RNA cysteine (anticodon GCA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978833 AGCD01043512;AGCD01043513;AGCD01043523;AGCD01057606;AGCD01060445;AGCD01060446;AGCD01060454;AGCD01060455;AGCD01060458;AGCD01060459;AGCD01060460;AGCD01060462;AGCD01064185;AGCD01079692;AGCD01079693;AGCD01079767;AGCD01079768 MODEL 8816539 pseudo LOC102009646 60S ribosomal protein L39 pseudogene NW_004955520 1114140 1114853 + 102009646 AGCD01068043;XM_005409228 MODEL 8787706 protein-coding Pgap2 post-GPI attachment to proteins 2 INVOLVED IN GPI anchor biosynthetic process (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog) NW_004955414 19607180 19630010 + 102008085 AGCD01015325;AGCD01015326;GBDF01082516;XM_005380026;XM_005380027;XM_005380028;XM_005380029;XM_013511899;XM_013511900;XM_013511901 XP_005380083;XP_005380084;XP_005380085;XP_005380086;XP_013367353;XP_013367354;XP_013367355 MODEL 8834435 protein-coding Slc29a3 solute carrier family 29 member 3 ENCODES a protein that exhibits cytidine transmembrane transporter activity (ortholog); guanine transmembrane transporter activity (ortholog); monoamine transmembrane transporter activity (ortholog); INVOLVED IN adenosine transport (ortholog); cytidine transport (ortholog); dopamine transport (ortholog); ASSOCIATED WITH acanthosis nigricans (ortholog); Asrar Facharzt Haque Syndrome (ortholog); congenital heart disease (ortholog); FOUND IN Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog); late endosome membrane (ortholog) NW_004955437 20072915 20108342 - 102007937 AGCD01034869;AGCD01034870;GBDK01324076;XM_005390038;XM_005390039 XP_005390095;XP_005390096 MODEL 41410893 protein-coding LINC00672 long intergenic non-protein coding RNA 672 8898763 protein-coding Rb1cc1 RB1 inducible coiled-coil 1 ENCODES a protein that exhibits protein kinase binding (ortholog); protein-membrane adaptor activity (ortholog); INVOLVED IN apoptotic process (ortholog); autophagosome assembly (ortholog); autophagy (ortholog); PARTICIPATES IN autophagy pathway; mTOR signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); breast adenocarcinoma (ortholog); breast cancer (ortholog); FOUND IN Atg1/ULK1 kinase complex (ortholog); autophagosome membrane (ortholog); cytosol (ortholog) NW_004955454 12201566 12257383 - 102029826 AGCD01045405;AGCD01045406;AGCD01045407;GBDF01043542;XM_013520171 XP_013375625 MODEL 8924243 protein-coding P4hb prolyl 4-hydroxylase subunit beta ENCODES a protein that exhibits actin binding (ortholog); enzyme binding (ortholog); integrin binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular response to interleukin-7 (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Cole-Carpenter syndrome (ortholog); Cole-Carpenter Syndrome 1 (ortholog); FOUND IN cytoskeleton (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955506 1307932 1322011 + 102025927 AGCD01065256;GBCE01007194;XM_005407252 XP_005407309 MODEL 8972628 protein-coding Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 ENCODES a protein that exhibits CDP phosphatase activity (ortholog); CTPase activity (ortholog); GDP phosphatase activity (ortholog); INVOLVED IN CTP metabolic process (ortholog); GDP catabolic process (ortholog); nucleobase-containing small molecule catabolic process (ortholog); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); FOUND IN autophagosome membrane (ortholog); Golgi membrane (ortholog) NW_004955403 46609211 46637622 - 102018456 AGCD01002864;AGCD01002865;AGCD01002866;GBBH01116869;XM_005373700;XM_005373701 XP_005373757;XP_005373758 MODEL 8833569 protein-coding Pwwp3a PWWP domain containing 3A, DNA repair factor ENCODES a protein that exhibits nucleosome binding (ortholog); INVOLVED IN chromatin organization (ortholog); DNA repair (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955495 6552305 6574191 - 102005817 AGCD01062085;GBCB01060538;XM_013505292 XP_013360746 MODEL 9017093 protein-coding LOC102006633 keratin-associated protein 20-2-like NW_004955407 30151533 30151730 + 102006633 AGCD01007628;XM_005375639 XP_005375696 MODEL 8744770 protein-coding Plcd4 phospholipase C delta 4 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); phosphatidylinositol phospholipase C activity (ortholog); INVOLVED IN acrosome reaction (ortholog); small GTPase-mediated signal transduction (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); myofibrillar myopathy 1 (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); plasma membrane (ortholog) NW_004955453 14775119 14812872 - 102006870 AGCD01044873;AGCD01044874;GBDK01398186;XM_013519913;XM_013519914;XM_013519915;XM_013519916;XM_013519917;XM_013519918;XM_013519920;XM_013519921;XM_013519922;XM_013519923;XM_013519924;XM_013519925 XP_013375367;XP_013375368;XP_013375369;XP_013375370;XP_013375371;XP_013375372;XP_013375374;XP_013375375;XP_013375376;XP_013375377;XP_013375378;XP_013375379 MODEL 9009511 ncrna LOC102008109 uncharacterized LOC102008109 NW_004955419 15542763 15563815 - 102008109 AGCD01020083;GBDF01286433;XR_260633 MODEL 8916375 protein-coding Rint1 RAD50 interactor 1 INVOLVED IN mitotic G2 DNA damage checkpoint signaling (ortholog); regulation of ER to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); hereditary breast ovarian cancer syndrome (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN Dsl1/NZR complex (ortholog); endoplasmic reticulum (ortholog) NW_004955410 10121322 10144748 + 102023124 AGCD01010792;GBDF01158170;XM_005377249;XM_013510527 XP_005377306;XP_013365981 MODEL 8768708 pseudo LOC102023402 60 kDa heat shock protein, mitochondrial pseudogene NW_004955561 2077130 2078369 - 102023402 AGCD01073870;XR_265012 MODEL 8723562 protein-coding Wdr83os WD repeat domain 83 opposite strand ENCODES a protein that exhibits protein folding chaperone (ortholog); INVOLVED IN multi-pass transmembrane protein insertion into ER membrane (ortholog); protein insertion into ER membrane (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); multi-pass translocon complex (ortholog); protein folding chaperone complex (ortholog) NW_004955415 31772401 31773916 - 102018721 AGCD01016697;GBCQ01011781;XM_005381018 XP_005381075 MODEL 8936849 pseudo LOC102005573 peroxiredoxin-1 pseudogene NW_004955410 34010516 34011152 - 102005573 AGCD01011394 MODEL 8810642 protein-coding Smim13 small integral membrane protein 13 NW_004955465 3321886 3343467 - 102018701 AGCD01050374;AGCD01050375;GBCB01041194;XM_005398828 XP_005398885 MODEL 8726609 protein-coding Pwwp3b PWWP domain containing 3B ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955548 2904964 2951956 + 102006614 AGCD01072411;AGCD01072412;GBDF01125244;XM_005412014;XM_005412015;XM_005412016;XM_013508513;XM_013508514;XM_013508515 XP_005412071;XP_005412072;XP_005412073;XP_013363967;XP_013363968;XP_013363969 MODEL 39131712 snorna SNORA71 Small nucleolar RNA SNORA71 8724588 protein-coding LOC102007016 2'-5'-oligoadenylate synthase 1-like NW_004955482 9316087 9321788 + 102007016 AGCD01057564;AGCD01057565;GBBH01096422;GBDI01244956;XM_013503740 XP_013359194 MODEL 8789854 ncrna LOC102011132 uncharacterized LOC102011132 NW_004955424 5106865 5118485 + 102011132 AGCD01024384;GBDF01016619;XR_261042 MODEL 9059749 protein-coding Riok1 RIO kinase 1 INVOLVED IN maturation of SSU-rRNA (ortholog); positive regulation of rRNA processing (ortholog); ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; FOUND IN cytosol (ortholog); methyltransferase complex (ortholog); preribosome, small subunit precursor (ortholog) NW_004955465 6487078 6506108 - 102028729 AGCD01050443;GBDF01084760;XM_005398856 XP_005398913 MODEL 9033798 ncrna LOC102009650 uncharacterized LOC102009650 NW_004955537 1976715 1992245 - 102009650 AGCD01070909;GBDJ01200201;XR_001232066;XR_001232067;XR_001232068;XR_264772 MODEL 8889500 protein-coding Pdhb pyruvate dehydrogenase E1 subunit beta ENCODES a protein that exhibits pyruvate dehydrogenase (acetyl-transferring) activity (ortholog); pyruvate dehydrogenase (NAD+) activity (ortholog); INVOLVED IN pyruvate decarboxylation to acetyl-CoA (ortholog); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; Leigh disease pathway; ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); pyruvate decarboxylase deficiency (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog); pyruvate dehydrogenase complex (ortholog) NW_004955430 1707615 1713541 + 102007796 AGCD01029132;GBBH01115754;XM_013515650 XP_013371104 MODEL 39131713 snorna SNORA71 Small nucleolar RNA SNORA71 8912562 protein-coding Setd2 SET domain containing 2, histone lysine methyltransferase ENCODES a protein that exhibits alpha-tubulin binding (ortholog); histone H3K36 methyltransferase activity (ortholog); protein-lysine N-methyltransferase activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell migration involved in vasculogenesis (ortholog); coronary vasculature morphogenesis (ortholog); PARTICIPATES IN histone modification pathway; renal cell carcinoma pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Agenesis of Corpus Callosum (ortholog); autism spectrum disorder (ortholog); FOUND IN chromosome (ortholog); nucleus (ortholog) NW_004955420 25070626 25178410 + 102005942 AGCD01021344;AGCD01021345;AGCD01021346;GBDF01080632;GBDF01080633;XM_013513427 XP_013368881 MODEL 8828379 protein-coding Pbrm1 polybromo 1 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN blastocyst formation (ortholog); heart development (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN altered SWI/SNF family mediated chromatin remodeling pathway; histone modification pathway; pancreatic cancer pathway; ASSOCIATED WITH cholangiocarcinoma (ortholog); clear cell renal cell carcinoma (ortholog); colorectal cancer (ortholog); FOUND IN kinetochore (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955430 2536086 2671094 - 102020362 AGCD01029168;AGCD01029169;AGCD01029170;AGCD01029171;GBCB01006733;GBDK01014485;XM_013515574;XM_013515575;XM_013515576;XM_013515577;XM_013515578;XM_013515579;XM_013515580;XM_013515582;XM_013515583;XM_013515584;XM_013515585;XM_013515586;XM_013515587 XP_013371028;XP_013371029;XP_013371030;XP_013371031;XP_013371032;XP_013371033;XP_013371034;XP_013371036;XP_013371037;XP_013371038;XP_013371039;XP_013371040;XP_013371041 MODEL 9045102 protein-coding Sorbs1 sorbin and SH3 domain containing 1 ENCODES a protein that exhibits insulin receptor binding (ortholog); protein kinase binding (ortholog); signaling receptor complex adaptor activity (ortholog); INVOLVED IN acetylcholine receptor signaling pathway (ortholog); cellular response to insulin stimulus (ortholog); focal adhesion assembly (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin signaling pathway; Rho/Rac/Cdc42 mediated signaling pathway; ASSOCIATED WITH Insulin Resistance (ortholog); obesity (ortholog); prostate cancer (ortholog); FOUND IN adherens junction (ortholog); cell-substrate junction (ortholog); centrosome (ortholog) NW_004955507 1622567 1849047 - 102007575 AGCD01065569;AGCD01065570;AGCD01065571;AGCD01065572;AGCD01065573;GBCE01159755;XM_013506166;XM_013506167;XM_013506168;XM_013506169;XM_013506170;XM_013506171;XM_013506173;XM_013506174;XM_013506175;XM_013506176;XM_013506177;XM_013506178;XM_013506179;XM_013506180;XM_013506181;XM_013506182;XM_013506183;XM_013506184;XM_013506185;XM_013506186;XM_013506187;XM_013506188;XM_013506189 XP_013361620;XP_013361621;XP_013361622;XP_013361623;XP_013361624;XP_013361625;XP_013361627;XP_013361628;XP_013361629;XP_013361630;XP_013361631;XP_013361632;XP_013361633;XP_013361634;XP_013361635;XP_013361636;XP_013361637;XP_013361638;XP_013361639;XP_013361640;XP_013361641;XP_013361642;XP_013361643 MODEL 8941135 protein-coding Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-4-phosphate 3-kinase activity (ortholog); lipid kinase activity (ortholog); INVOLVED IN autophagosome organization (ortholog); cellular response to starvation (ortholog); macroautophagy (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytosol (ortholog); endocytic vesicle (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955406 40247690 40317556 - 102025206 AGCD01006659;GBDI01227056;XM_005375313 XP_005375370 MODEL 8808123 protein-coding LOC102010752 olfactory receptor 10V1-like NW_004955580 1278611 1279549 + 102010752 AGCD01075652;GBBH01028735;XM_005414226 XP_005414283 MODEL 8991735 protein-coding Linc02874 long intergenic non-protein coding RNA 2874 NW_004955547 2545043 2551414 - 102017816 AGCD01072283;XM_013508444 XP_013363898 MODEL 8835897 protein-coding Srsf3 serine and arginine rich splicing factor 3 ENCODES a protein that exhibits phospholipase binding (ortholog); pre-mRNA binding (ortholog); primary miRNA binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); mRNA export from nucleus (ortholog); primary miRNA processing (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH bipolar disorder (ortholog); ovary epithelial cancer (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN nuclear speck (ortholog) NW_004955437 6306151 6314332 - 102028575 AGCD01034427;AGCD01034428;GBDI01019802;XM_005389649 XP_005389706 MODEL 8747976 protein-coding Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) ENCODES a protein that exhibits ADP phosphatase activity (ortholog); CDP phosphatase activity (ortholog); GDP phosphatase activity (ortholog); INVOLVED IN 'de novo' post-translational protein folding (ortholog); protein N-linked glycosylation (ortholog); UDP catabolic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); pneumonia (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog); extracellular region (ortholog) NW_004955523 1407812 1441829 + 102022732 AGCD01068517;AGCD01068518;AGCD01068519;GBDF01052180;XM_013507129;XM_013507130;XM_013507131;XM_013507132;XM_013507133;XM_013507134;XM_013507135;XM_013507136;XM_013507137 XP_013362583;XP_013362584;XP_013362585;XP_013362586;XP_013362587;XP_013362588;XP_013362589;XP_013362590;XP_013362591 MODEL 8776978 protein-coding LOC102008514 putative olfactory receptor 2B8 NW_004955465 13513122 13518306 - 102008514 AGCD01050613;GBDF01256300;XM_005398955;XM_013521794;XM_013521795 XP_005399012;XP_013377248;XP_013377249 MODEL 8708903 protein-coding Ndst4 N-deacetylase and N-sulfotransferase 4 ENCODES a protein that exhibits deacetylase activity (ortholog); heparan sulfate N-sulfotransferase activity (ortholog); N-acetylglucosamine deacetylase activity (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog) NW_004955428 24376587 24636555 + 102028318 AGCD01028255;AGCD01028256;AGCD01028257;AGCD01028258;AGCD01028259;AGCD01028260;AGCD01028261;AGCD01028262;AGCD01028263;AGCD01028264;AGCD01028265;GBDF01226340;XM_013515257;XM_013515258;XM_013515259;XM_013515260;XM_013515261 XP_013370711;XP_013370712;XP_013370713;XP_013370714;XP_013370715 MODEL 8965540 protein-coding Pnpla3 patatin like domain 3, 1-acylglycerol-3-phosphate O-acyltransferase ENCODES a protein that exhibits 1-acylglycerol-3-phosphate O-acyltransferase activity (ortholog); diolein transacylation activity (ortholog); long-chain fatty acyl-CoA binding (ortholog); INVOLVED IN cellular response to 3,3',5-triiodo-L-thyronine (ortholog); cellular response to insulin stimulus (ortholog); glycerophospholipid metabolic process (ortholog); ASSOCIATED WITH alcoholic liver cirrhosis (ortholog); Alcoholic Liver Diseases (ortholog); coronary artery disease (ortholog); FOUND IN lipid droplet (ortholog); membrane (ortholog) NW_004955413 28879646 28896224 + 102019902 AGCD01014572;GBDK01116835;XM_005379450;XM_005379451 XP_005379507;XP_005379508 MODEL 8840530 protein-coding LOC102003764 collagen alpha-1(III) chain-like NW_004955478 11060155 11061599 - 102003764 AGCD01056157;GBCB01001731;XM_005402303 XP_005402360 MODEL 8952368 protein-coding Trak2 trafficking kinesin protein 2 ENCODES a protein that exhibits enzyme binding (ortholog); GABA receptor binding (ortholog); kinesin binding (ortholog); INVOLVED IN dendrite morphogenesis (ortholog); dendritic transport of mitochondrion (ortholog); endosome to lysosome transport (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); common variable immunodeficiency 1 (ortholog); FOUND IN axonal growth cone (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955403 205372 261210 + 102020182 AGCD01001683;AGCD01001684;AGCD01001685;GBDK01185209;XM_005373197;XM_005373199;XM_005373200;XM_005373201;XM_013511713;XM_013511715 XP_005373254;XP_005373256;XP_005373257;XP_005373258;XP_013367167;XP_013367169 MODEL 40834593 protein-coding C11orf80 chromosome 11 open reading frame 80 8943463 protein-coding Renbp renin binding protein ENCODES a protein that exhibits ATP binding (ortholog); enzyme inhibitor activity (ortholog); identical protein binding (ortholog); INVOLVED IN N-acetylglucosamine metabolic process (ortholog); N-acetylmannosamine metabolic process (ortholog); negative regulation of catalytic activity (ortholog); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; renin-angiotensin cascade pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog) NW_004955580 610112 615019 - 102024067 AGCD01075615;GBCE01052970;GBCQ01072116;XM_013509702 XP_013365156 MODEL 8997181 ncrna LOC102007019 uncharacterized LOC102007019 NW_004955420 21387304 21399329 - 102007019 AGCD01021135;GBDK01343956;XR_260734 MODEL 8840792 protein-coding Slc6a1 solute carrier family 6 member 1 ENCODES a protein that exhibits amino acid:sodium symporter activity (ortholog); gamma-aminobutyric acid transmembrane transporter activity (ortholog); gamma-aminobutyric acid:sodium:chloride symporter activity (ortholog); INVOLVED IN associative learning (ortholog); chloride transmembrane transport (ortholog); gamma-aminobutyric acid import (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); amyotrophic lateral sclerosis (ortholog); Atrioventricular Septal Defect 2 (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); GABA-ergic synapse (ortholog) NW_004955429 13930899 13946010 + 102014155 AGCD01028771;GBDF01171454;XM_005387004;XM_005387005 XP_005387061;XP_005387062 MODEL 8937159 ncrna LOC102021688 uncharacterized LOC102021688 NW_004955425 15981368 16020243 - 102021688 AGCD01025594;GBDF01249930;XR_001234295;XR_261147;XR_261148;XR_261149;XR_261150 MODEL 9062926 pseudo LOC102009651 synaptonemal complex protein 3-like NW_004955437 1319326 1320146 - 102009651 AGCD01034204 MODEL 8885644 pseudo LOC102011971 60S ribosomal protein L3 pseudogene NW_004955468 5498734 5501315 - 102011971 AGCD01051971;XR_263421 MODEL 8890803 ncrna LOC102019212 uncharacterized LOC102019212 NW_004955444 6086193 6102188 - 102019212 AGCD01038849;GBCB01024205;XR_262243 MODEL 8795519 protein-coding LOC102010393 uncharacterized LOC102010393 NW_004955428 1963436 1974145 + 102010393 AGCD01027626;GBBH01018275;XM_005386840 XP_005386897 MODEL 9020620 protein-coding Pbx1 PBX homeobox 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN adrenal gland development (ortholog); animal organ morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); brain infarction (ortholog); Burkitt lymphoma (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955462 11777168 12083068 - 102006551 AGCD01049394;AGCD01049395;AGCD01049396;AGCD01049397;GBDK01178003;XM_005398250;XM_005398252;XM_005398253;XM_005398254;XM_013521403 XP_005398307;XP_005398309;XP_005398310;XP_005398311;XP_013376857 MODEL 9040257 pseudo LOC102009655 dynein assembly factor 3, axonemal homolog NW_004955441 695019 709803 - 102009655 AGCD01036728;AGCD01036729;AGCD01036730;AGCD01036731 MODEL 9034303 protein-coding Ppcdc phosphopantothenoylcysteine decarboxylase ENCODES a protein that exhibits FMN binding (ortholog); identical protein binding (ortholog); phosphopantothenoylcysteine decarboxylase activity (ortholog); INVOLVED IN coenzyme A biosynthetic process (ortholog); PARTICIPATES IN pantothenic acid metabolic pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); PAPA syndrome (ortholog) NW_004955450 2971874 2985034 - 102003923 AGCD01042416;GBDF01014837;XM_005393522;XM_005393523;XM_005393524;XM_013518850;XM_013518851;XM_013518852;XM_013518853;XM_013518854;XM_013518855;XR_001235857;XR_262523 XP_005393579;XP_005393580;XP_005393581;XP_013374304;XP_013374305;XP_013374306;XP_013374307;XP_013374308;XP_013374309 MODEL 9027751 ncrna LOC102012771 uncharacterized LOC102012771 NW_004955422 26067668 26092884 - 102012771 AGCD01023274;AGCD01023275;GBDI01368464;XR_260916 MODEL 8861434 protein-coding Wdr86 WD repeat domain 86 ASSOCIATED WITH lethal congenital glycogen storage disease of heart (ortholog); long QT syndrome (ortholog) NW_004955491 5739715 5765469 - 102008115 AGCD01060499;AGCD01060500;AGCD01060501;GBCE01031431;GBCQ01153453;XM_005404830 XP_005404887 MODEL 39133355 snrna U4 U4 spliceosomal RNA 9048933 protein-coding Pstpip2 proline-serine-threonine phosphatase interacting protein 2 ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); chronic recurrent multifocal osteomyelitis (ortholog); intellectual disability (ortholog); FOUND IN cytoskeleton (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955402 31538335 31637901 - 102027028 AGCD01000790;AGCD01000791;AGCD01000792;AGCD01000793;AGCD01000794;AGCD01000795;AGCD01000796;AGCD01000797;AGCD01000798;AGCD01000799;AGCD01000800;GBDJ01042045;XM_005372863;XM_013510408 XP_005372920;XP_013365862 MODEL 8997689 protein-coding Smim14 small integral membrane protein 14 INVOLVED IN blastocyst hatching (ortholog); ASSOCIATED WITH Hyperglycinemia, Lactic Acidosis, and Seizures (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955443 7762760 7828545 + 102024959 AGCD01038297;AGCD01038298;GBDF01009135;XM_005391976 XP_005392033 MODEL 15036857 trna Trnad-auc transfer RNA aspartic acid (anticodon AUC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978828 8945699 protein-coding Entpd6 ectonucleoside triphosphate diphosphohydrolase 6 ENCODES a protein that exhibits CDP phosphatase activity (ortholog); GDP phosphatase activity (ortholog); guanosine-5'-triphosphate,3'-diphosphate diphosphatase activity (ortholog); INVOLVED IN response to calcium ion (ortholog); response to magnesium ion (ortholog); ASSOCIATED WITH obesity (ortholog); seminoma (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog); extracellular space (ortholog) NW_004955415 31219909 31245107 + 102010479 AGCD01016671;AGCD01016672;GBDK01241622;XM_005380988 XP_005381045 MODEL 39131971 snorna SNORD81 Small nucleolar RNA SNORD81 8908957 ncrna LOC102011133 uncharacterized LOC102011133 NW_004955496 4331938 4345273 + 102011133 AGCD01062320;GBDF01074903;XR_264176 MODEL 9033867 protein-coding Tsn translin ENCODES a protein that exhibits identical protein binding (ortholog); mRNA binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN siRNA processing (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoribonuclease complex (ortholog) NW_004955459 8285442 8299329 - 102012835 AGCD01048139;GBDJ01275284;XM_005397637 XP_005397694 MODEL 39131578 protein-coding C11orf96 chromosome 11 open reading frame 96 9042866 protein-coding LOC102003769 protein NipSnap homolog 3A-like NW_004955419 21692598 21700920 - 102003769 AGCD01020281;GBCB01039739;GBDK01115357;XM_013513175 XP_013368629 MODEL 8830357 protein-coding Pgap3 post-GPI attachment to proteins phospholipase 3 ENCODES a protein that exhibits hydrolase activity, acting on ester bonds (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); GPI anchor metabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); hyperphosphatasia with impaired intellectual development syndrome (ortholog); hyperphosphatasia with impaired intellectual development syndrome 4 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955451 14418923 14428032 - 102029353 AGCD01043552;GBCE01029380;XM_005394317;XM_005394318 XP_005394374;XP_005394375 MODEL 8834059 protein-coding Rep15 RAB15 effector protein INVOLVED IN receptor recycling (ortholog); transferrin transport (ortholog); FOUND IN endosome membrane (ortholog); perinuclear region of cytoplasm (ortholog); recycling endosome (ortholog) NW_004955505 7189592 7190928 - 102021262 AGCD01065201;GBDJ01171786;XM_005407162 XP_005407219 MODEL 9017985 protein-coding P4htm prolyl 4-hydroxylase, transmembrane ENCODES a protein that exhibits 2-oxoglutarate-dependent dioxygenase activity (ortholog); INVOLVED IN regulation of erythrocyte differentiation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); carnitine-acylcarnitine translocase deficiency (ortholog) NW_004955532 1015259 1029749 + 102006608 AGCD01070161;GBBH01140814;XM_005410363 XP_005410420 MODEL 8927000 pseudo LOC102021690 zinc finger protein 250-like NW_004955427 17506682 17508299 + 102021690 AGCD01027331 MODEL 8826532 protein-coding LOC102008111 UPF0547 protein C16orf87 NW_004955420 26793782 26794800 + 102008111 AGCD01021432;XM_005383473 XP_005383530 MODEL 8877918 protein-coding LOC102010753 putative uncharacterized protein ZNRD1-AS1 NW_004955583 186389 190965 - 102010753 AGCD01075800;AGCD01075801;GBDI01025273;XM_013509840 XP_013365294 MODEL 8772562 protein-coding Pik3c2g phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma ENCODES a protein that exhibits 1-phosphatidylinositol 4-kinase activity (ortholog); 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-4-phosphate 3-kinase activity (ortholog); INVOLVED IN chemotaxis (ortholog); phosphatidylinositol-3-phosphate biosynthetic process (ortholog); ASSOCIATED WITH coronary artery disease (ortholog); spermatogenic failure 17 (ortholog); Tracheoesophageal Fistula (ortholog); FOUND IN membrane (ortholog); nuclear envelope (ortholog) NW_004955413 14454376 14764323 + 102010887 AGCD01014046;AGCD01014047;AGCD01014048;AGCD01014049;AGCD01014050;AGCD01014051;GBCE01112271;XM_005379037;XM_005379038;XM_005379039 XP_005379094;XP_005379095;XP_005379096 MODEL 8859708 ncrna LOC102023403 uncharacterized LOC102023403 NW_004955444 15501192 15502267 - 102023403 AGCD01039136;GBDF01064198;XR_262274 MODEL 8891788 protein-coding Prph2 peripherin 2 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN detection of light stimulus involved in visual perception (ortholog); photoreceptor cell outer segment organization (ortholog); protein heterooligomerization (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; ASSOCIATED WITH bestrophinopathy (ortholog); Central Areolar Choroidal Dystrophy 2 (ortholog); choroid disease (ortholog); FOUND IN photoreceptor outer segment (ortholog) NW_004955437 8784211 8794789 - 102023632 AGCD01034497;AGCD01034498;GBBH01103789;XM_005389723 XP_005389780 MODEL 8957539 protein-coding Sorbs2 sorbin and SH3 domain containing 2 ENCODES a protein that exhibits identical protein binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN acetylcholine receptor signaling pathway (ortholog); cell growth involved in cardiac muscle cell development (ortholog); Notch signaling pathway (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Herpes Simplex Encephalitis 1 (ortholog); Weight Gain (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog); plasma membrane (ortholog) NW_004955403 23295887 23503654 + 102021196 AGCD01002242;AGCD01002243;AGCD01002244;AGCD01002245;AGCD01002246;GBBH01186974;XM_013512887;XM_013512888;XM_013512891;XM_013512898;XM_013512906 XP_013368341;XP_013368342;XP_013368345;XP_013368352;XP_013368360 MODEL 8895955 protein-coding Tlcd1 TLC domain containing 1 INVOLVED IN membrane assembly (ortholog); phospholipid homeostasis (ortholog); plasma membrane organization (ortholog); FOUND IN plasma membrane (ortholog) NW_004955481 4429923 4433147 + 102022289 AGCD01056937;AGCD01056938;GBBH01123169;GBCQ01100660;XM_005402717 XP_005402774 MODEL 8827041 protein-coding Rac2 Rac family small GTPase 2 ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); protein kinase regulator activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); bone resorption (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adenylosuccinase lyase deficiency (ortholog); Chronic Periodontitis (ortholog); FOUND IN actin filament (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955413 23697504 23710668 - 102029610 AGCD01014333;GBCB01050846;XM_005379195;XM_005379196 XP_005379252;XP_005379253 MODEL 8703320 protein-coding Srsf4 serine and arginine rich splicing factor 4 ENCODES a protein that exhibits sequence-specific mRNA binding (ortholog); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); negative regulation of mRNA splicing, via spliceosome (ortholog); response to insulin (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); clear cell renal cell carcinoma (ortholog); colon adenocarcinoma (ortholog); FOUND IN nuclear speck (ortholog) NW_004955452 8143850 8174830 - 102023221 AGCD01044211;GBDJ01016011;XM_005394977;XM_013519479;XM_013519480 XP_005395034;XP_013374933;XP_013374934 MODEL 8716228 protein-coding LOC102012773 fatty acid-binding protein, liver NW_004955424 624397 629958 + 102012773 AGCD01024188;GBCQ01000092;XM_005385381 XP_005385438 MODEL 39133359 snrna U4 U4 spliceosomal RNA 39131969 snorna SNORD81 Small nucleolar RNA SNORD81 9054931 protein-coding LOC102006635 keratin-associated protein 12-3-like NW_004955407 41624924 41625555 - 102006635 AGCD01007874;XM_013505462 XP_013360916 MODEL 8841152 ncrna LOC102024462 uncharacterized LOC102024462 NW_004955417 29298430 29304548 - 102024462 AGCD01018595;AGCD01018596;GBDF01180782;XR_001233401;XR_001233402 MODEL 39131714 snorna SNORA71 Small nucleolar RNA SNORA71 8849915 ncrna LOC102011577 uncharacterized LOC102011577 NW_004955521 1595235 1596832 - 102011577 AGCD01068190;GBDF01280804;XR_264603 MODEL 39131365 protein-coding C13orf42 chromosome 13 open reading frame 42 10359006 ncrna LOC106149903 uncharacterized LOC106149903 NW_004955456 5894387 5943914 + 106149903 AGCD01046357;AGCD01046358;GBDJ01298811;XR_001236371;XR_001236372 MODEL 9042449 protein-coding LOC102011137 olfactory receptor 4D11-like NW_004955511 4022531 4023466 + 102011137 AGCD01066488;XM_013506353 XP_013361807 MODEL 39132471 snorna SNORD82 Small nucleolar RNA SNORD82 8892349 protein-coding Tsnare1 t-SNARE domain containing 1 ASSOCIATED WITH Recombinant Chromosome 8 Syndrome (ortholog) NW_004955454 743022 1203483 - 102020635 AGCD01044960;AGCD01044961;AGCD01044962;AGCD01044963;AGCD01044964;AGCD01044965;GBDF01179211;XM_013520010 XP_013375464 MODEL 8718409 ncrna LOC102008515 uncharacterized LOC102008515 NW_004955412 14935574 14945274 - 102008515 AGCD01012863;GBCQ01079249;XR_259995 MODEL 8974844 ncrna LOC102017621 uncharacterized LOC102017621 NW_004955451 11658116 11663081 + 102017621 AGCD01043362;GBCE01179796;XR_001235940;XR_262592 MODEL 41410888 protein-coding C16orf87 chromosome 16 open reading frame 87 9052013 pseudo LOC102010394 heterogeneous nuclear ribonucleoprotein K pseudogene NW_004955429 5495670 5504446 - 102010394 AGCD01028516;AGCD01028517 MODEL 9041349 ncrna LOC102023404 uncharacterized LOC102023404 NW_004955567 888493 891286 - 102023404 AGCD01074444;AGCD01074445;GBDF01085445;XR_265027 MODEL 9065896 pseudo LOC102008112 amyloid beta A4 precursor protein-binding family B member 2-like NW_004955488 9036407 9057644 + 102008112 AGCD01059741;AGCD01059742;AGCD01059743 MODEL 8883822 ncrna LOC102009657 uncharacterized LOC102009657 NW_004955442 3325633 3327511 + 102009657 AGCD01037505;GBDF01145907;XR_262111 MODEL 8933676 protein-coding Pnpla4 patatin like domain 4, phospholipase and triacylglycerol lipase ENCODES a protein that exhibits acylglycerol O-acyltransferase activity (ortholog); diolein transacylation activity (ortholog); mono-olein transacylation activity (ortholog); PARTICIPATES IN retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH amenorrhea (ortholog); autistic disorder (ortholog); cerebral palsy (ortholog); FOUND IN mitochondrion (ortholog) NW_004955499 5875706 5925809 - 102018307 AGCD01063532;AGCD01063533;GBCQ01151838;XM_005406541;XM_013505580;XM_013505581 XP_005406598;XP_013361034;XP_013361035 MODEL 9054750 protein-coding Slc29a4 solute carrier family 29 member 4 ENCODES a protein that exhibits efflux transmembrane transporter activity (ortholog); monoamine transmembrane transporter activity (ortholog); monoatomic cation transmembrane transporter activity (ortholog); INVOLVED IN adenosine transport (ortholog); cellular detoxification (ortholog); dopamine transport (ortholog); PARTICIPATES IN metformin pharmacokinetics pathway; ASSOCIATED WITH Baraitser-Winter syndrome 1 (ortholog); megacolon (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955460 10155916 10181974 + 102029155 AGCD01048573;AGCD01048574;AGCD01048575;GBBH01180329;XM_005397838;XM_005397839;XM_013521136 XP_005397895;XP_005397896;XP_013376590 MODEL 8743490 ncrna LOC102007021 uncharacterized LOC102007021 NW_004955420 24298864 24300985 - 102007021 AGCD01021290;GBCQ01057710;XR_260746;XR_260747;XR_260748 MODEL 9019384 ncrna LOC102015713 uncharacterized LOC102015713 NW_004955414 23873136 23879589 - 102015713 AGCD01015527;GBDI01164401;XR_001233159;XR_260193 MODEL 8744344 protein-coding Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 ENCODES a protein that exhibits CTPase activity (ortholog); GTPase activity (ortholog); ribonucleoside triphosphate phosphatase activity (ortholog); INVOLVED IN CTP catabolic process (ortholog); GTP metabolic process (ortholog); nucleobase-containing small molecule catabolic process (ortholog); ASSOCIATED WITH Leigh disease (ortholog); mitochondrial complex IV deficiency nuclear type 1 (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog) NW_004955507 5552788 5594911 + 102016297 AGCD01065679;AGCD01065680;GBDF01113293;XM_005407671 XP_005407728 MODEL 8795014 pseudo LOC102023406 kinesin-like protein KIF20B pseudogene NW_004955568 1555117 1559011 - 102023406 AGCD01074547 MODEL 8821803 ncrna LOC102008117 uncharacterized LOC102008117 NW_004955493 654340 655511 - 102008117 AGCD01060859;GBDK01039914;XR_264062 MODEL 8976933 pseudo LOC102012779 dynactin subunit 6 pseudogene NW_004955425 21033663 21038693 - 102012779 AGCD01025781 MODEL 9050973 pseudo LOC102005574 ATP-binding cassette sub-family F member 2-like NW_004955463 4656863 4661099 + 102005574 AGCD01049614 MODEL 39133360 snrna U4 U4 spliceosomal RNA 39131715 snorna SNORA71 Small nucleolar RNA SNORA71 8979735 ncrna LOC102006638 uncharacterized LOC102006638 NW_004955409 9973340 9976636 - 102006638 AGCD01009449;GBDF01306881;XR_259765 MODEL 8737599 protein-coding LOC102011975 olfactory receptor 52B2-like NW_004955414 21918896 21919849 - 102011975 AGCD01015437;XM_005380105 XP_005380162 MODEL 8716170 pseudo LOC102011138 mitochondrial calcium uniporter regulator 1 pseudogene NW_004955430 1898687 1900786 - 102011138 AGCD01029142 MODEL 8849945 protein-coding Pxdc1 PX domain containing 1 NW_004955465 9589248 9613700 + 102013916 AGCD01050493;GBCE01005280;GBDJ01191084;XM_005398893 XP_005398950 MODEL 8822826 protein-coding LOC102021691 estradiol 17 beta-dehydrogenase 5-like NW_004955429 578697 593487 + 102021691 AGCD01028368;AGCD01028369;GBDF01052126;XM_005386850;XM_005386852 XP_005386907;XP_005386909 MODEL 39132457 snorna SNORD82 Small nucleolar RNA SNORD82 8885766 protein-coding Wdr88 WD repeat domain 88 ASSOCIATED WITH acute myeloid leukemia (ortholog); hereditary spastic paraplegia 75 (ortholog) NW_004955468 551574 563630 + 102015187 AGCD01051712;GBDF01088193;XM_013522282 XP_013377736 MODEL 8957778 trna Trnad-guc transfer RNA aspartic acid (anticodon GUC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978829 AGCD01005333;AGCD01005375;AGCD01023470;AGCD01049456;AGCD01050593;AGCD01051466;AGCD01057309 MODEL 8877634 protein-coding Tram1 translocation associated membrane protein 1 INVOLVED IN cotranslational protein targeting to membrane (ortholog); protein insertion into ER membrane (ortholog); response to unfolded protein (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955444 9110533 9153585 + 102030248 AGCD01038959;AGCD01038960;AGCD01038961;GBDK01002034;XM_005392105 XP_005392162 MODEL 8886577 protein-coding Tlcd2 TLC domain containing 2 INVOLVED IN membrane assembly (ortholog); phospholipid homeostasis (ortholog); plasma membrane organization (ortholog); FOUND IN plasma membrane (ortholog) NW_004955481 1475748 1478447 + 102017659 AGCD01056833;GBDI01280068;XM_005402611 XP_005402668 MODEL 126903047 protein-coding C17orf114 chromosome 17 open reading frame 114 10298459 ncrna LOC106147067 uncharacterized LOC106147067 NW_004955514 4005456 4007317 - 106147067 AGCD01067124;GBDF01249505;XR_001231783 MODEL 8710348 protein-coding Plce1 phospholipase C epsilon 1 ENCODES a protein that exhibits enzyme binding (ortholog); phosphatidylinositol phospholipase C activity (ortholog); phospholipase C activity (ortholog); INVOLVED IN diacylglycerol biosynthetic process (ortholog); epidermal growth factor receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); benign familial hematuria (ortholog); dengue hemorrhagic fever (ortholog); FOUND IN cytosol (ortholog); lamellipodium (ortholog); plasma membrane (ortholog) NW_004955507 555570 825568 + 102004404 AGCD01065477;AGCD01065478;AGCD01065479;AGCD01065480;AGCD01065481;AGCD01065482;AGCD01065483;AGCD01065484;AGCD01065485;AGCD01065486;AGCD01065487;AGCD01065488;GBDK01321403;XM_005407528;XM_013506159;XM_013506160 XP_005407585;XP_013361613;XP_013361614 MODEL 8732839 ncrna LOC102007033 uncharacterized LOC102007033 NW_004955424 2197417 2203371 + 102007033 AGCD01024264;XR_001234174;XR_261035 MODEL 8867395 protein-coding Pnpla5 patatin like domain 5, triacylglycerol lipase ENCODES a protein that exhibits triacylglycerol lipase activity (ortholog); ASSOCIATED WITH intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog) NW_004955413 28825673 28835476 - 102019159 AGCD01014568;GBDJ01219176;XM_005379447;XM_005379449 XP_005379504;XP_005379506 MODEL 8707916 protein-coding LOC102011579 pancreatic alpha-amylase NW_004955435 7974418 8023066 + 102011579 AGCD01032983;AGCD01032984;AGCD01032985;AGCD01032986;AGCD01032987;AGCD01032988;AGCD01032989;GBDK01013521;XM_005388812;XM_013516505;XM_013516506 XP_005388869;XP_013371959;XP_013371960 MODEL 8846430 pseudo LOC102010757 28S ribosomal protein S36, mitochondrial pseudogene NW_004955402 51239421 51239728 - 102010757 AGCD01001297 MODEL 8984765 protein-coding Pbx2 PBX homeobox 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN embryonic limb morphogenesis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); proximal/distal pattern formation (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955437 648935 654008 - 102016090 AGCD01034152;GBCB01059412;XM_005389439 XP_005389496 MODEL 9024948 protein-coding Ppcs phosphopantothenoylcysteine synthetase ENCODES a protein that exhibits identical protein binding (ortholog); phosphopantothenate--cysteine ligase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN acetyl-CoA biosynthetic process (ortholog); coenzyme A biosynthetic process (ortholog); heart process (ortholog); PARTICIPATES IN pantothenic acid metabolic pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); dilated cardiomyopathy 2C (ortholog); genetic disease (ortholog) NW_004955537 2080865 2084199 + 102013336 AGCD01070917;GBDK01187161;XM_005410610;XM_005410611;XM_013507766 XP_005410667;XP_005410668;XP_013363220 MODEL 8990697 protein-coding Ndufa1 NADH:ubiquinone oxidoreductase subunit A1 PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Danon disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955534 152291 154183 - 102007591 AGCD01070441;GBCC01012764;XM_005410429 XP_005410486 MODEL 8853582 protein-coding Pdhx pyruvate dehydrogenase complex component X ENCODES a protein that exhibits pyruvate dehydrogenase (NAD+) activity (ortholog); INVOLVED IN pyruvate decarboxylation to acetyl-CoA (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Leigh Syndrome, X-Linked (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955422 11335766 11405565 - 102013304 AGCD01022754;AGCD01022755;GBCB01022296;XM_005384137;XM_013514244 XP_005384194;XP_013369698 MODEL 8862851 protein-coding Tsnax translin associated factor X ENCODES a protein that exhibits A2A adenosine receptor binding (ortholog); protein-containing complex binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN siRNA processing (ortholog); ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); endoribonuclease complex (ortholog); Golgi apparatus (ortholog) NW_004955492 7304982 7335512 - 102006784 AGCD01060784;AGCD01060785;AGCD01060786;GBDF01124616;XM_005404969;XM_013504735 XP_005405026;XP_013360189 MODEL 8804737 protein-coding Smim15 small integral membrane protein 15 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955446 7335295 7341209 + 102028480 AGCD01040112;GBDI01067814;XM_005392648;XM_005392649;XM_005392650;XM_005392651 XP_005392705;XP_005392706;XP_005392707;XP_005392708 MODEL 39132709 snorna SNORD83 Small nucleolar RNA SNORD83 8950652 protein-coding Sorbs3 sorbin and SH3 domain containing 3 ENCODES a protein that exhibits vinculin binding (ortholog); INVOLVED IN cell-substrate adhesion (ortholog); MAPK cascade (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); FOUND IN cytoplasm (ortholog); focal adhesion (ortholog); nucleus (ortholog) NW_004955403 45973381 46003807 + 102009004 AGCD01002845;AGCD01002846;AGCD01002847;GBBH01031911;XM_005373666;XM_005373668;XM_005373669;XM_005373670;XM_005373671;XM_005373674;XM_005373675;XM_005373676;XM_013513844;XM_013513847 XP_005373723;XP_005373725;XP_005373726;XP_005373727;XP_005373728;XP_005373731;XP_005373732;XP_005373733;XP_013369298;XP_013369301 MODEL 8769645 pseudo LOC102011140 thioredoxin pseudogene NW_004955512 2762023 2762354 - 102011140 AGCD01066685 MODEL 8806269 protein-coding Srsf5 serine and arginine rich splicing factor 5 ENCODES a protein that exhibits protein kinase B binding (ortholog); RNA binding (ortholog); RS domain binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); liver development (ortholog); liver regeneration (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH breast cancer (ortholog); clear cell renal cell carcinoma (ortholog); colon adenocarcinoma (ortholog); FOUND IN cytosol (ortholog); nuclear speck (ortholog); nucleolus (ortholog) NW_004955466 612221 617087 - 102026619 AGCD01050667;GBDJ01008234;XM_005399030;XM_005399031 XP_005399087;XP_005399088 MODEL 8845126 protein-coding Rac3 Rac family small GTPase 3 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); GTPase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cell projection assembly (ortholog); cerebral cortex GABAergic interneuron development (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); basal cell carcinoma (ortholog); genetic disease (ortholog); FOUND IN cell periphery (ortholog); endomembrane system (ortholog); filamentous actin (ortholog) NW_004955506 1139098 1142443 - 102018849 AGCD01065246;AGCD01065247;GBBH01089257;XM_005407227 XP_005407284 MODEL 9002586 protein-coding Slc6a11 solute carrier family 6 member 11 ENCODES a protein that exhibits amino acid binding (ortholog); amino acid:sodium symporter activity (ortholog); gamma-aminobutyric acid:sodium:chloride symporter activity (ortholog); INVOLVED IN monocarboxylic acid transport (ortholog); neurotransmitter transport (ortholog); neurotransmitter uptake (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); Experimental Seizures (ortholog); melanoma (ortholog); FOUND IN cell projection (ortholog); GABA-ergic synapse (ortholog); plasma membrane (ortholog) NW_004955429 13774455 13880690 + 102021032 AGCD01028769;AGCD01028770;GBDF01034697;XM_005387255 XP_005387312 MODEL 8949700 protein-coding Tlcd3a TLC domain containing 3A ASSOCIATED WITH Fraser syndrome 3 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955481 2283620 2292100 + 102025791 AGCD01056873;GBBH01007264;GBDF01128173;XM_005402638;XM_013503379 XP_005402695;XP_013358833 MODEL 9064074 pseudo LOC102023407 zinc finger and BTB domain-containing protein 44 pseudogene NW_004955445 3042212 3043542 + 102023407 AGCD01039378 MODEL 9038780 protein-coding Rubcn rubicon autophagy regulator ENCODES a protein that exhibits phosphatidylinositol 3-kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of autophagosome maturation (ortholog); negative regulation of autophagy (ortholog); negative regulation of endocytosis (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 15 (ortholog); Developmental Disabilities (ortholog); Diamond-Blackfan anemia 5 (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); Golgi apparatus (ortholog) NW_004955420 12124193 12187154 + 102029749 AGCD01020855;AGCD01020856;AGCD01020857;GBDF01120735;XM_005383093;XM_005383094;XM_005383095 XP_005383150;XP_005383151;XP_005383152 MODEL 8718235 protein-coding Pa2g4 proliferation-associated 2G4 ENCODES a protein that exhibits nucleic acid binding (ortholog); transcription corepressor activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of DNA-templated transcription (ortholog); positive regulation of cell differentiation (ortholog); ASSOCIATED WITH Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955458 3705704 3715782 + 102030282 AGCD01047338;AGCD01047339;GBDF01001985;XM_005397287 XP_005397344 MODEL 39133361 snrna U4 U4 spliceosomal RNA 9029942 ncrna LOC102012781 uncharacterized LOC102012781 NW_004955506 899099 904521 - 102012781 AGCD01065240;GBCE01032246;XR_264316 MODEL 8978280 protein-coding Riok2 RIO kinase 2 INVOLVED IN maturation of SSU-rRNA (ortholog); positive regulation of ribosomal small subunit export from nucleus (ortholog); positive regulation of rRNA processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); preribosome, small subunit precursor (ortholog) NW_004955418 15487248 15509490 + 102007996 AGCD01019106;GBDI01215559;XM_005382217;XM_005382219 XP_005382274;XP_005382276 MODEL 39131716 snorna SNORA71 Small nucleolar RNA SNORA71 8907592 ncrna LOC102006644 uncharacterized LOC102006644 NW_004955466 12342203 12365183 - 102006644 AGCD01051124;AGCD01051125;AGCD01051126;GBDK01153059;XR_263319 MODEL 8860274 protein-coding LOC102017623 uncharacterized LOC102017623 NW_004955451 17616484 17619800 + 102017623 AGCD01043763;XM_005394540 XP_005394597 MODEL 9005279 protein-coding Plcg1 phospholipase C gamma 1 ENCODES a protein that exhibits calcium-dependent phospholipase C activity (ortholog); glutamate receptor binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN calcium ion transport (ortholog); calcium-mediated signaling (ortholog); cell migration (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH acute myocardial infarction (ortholog); adult T-cell leukemia/lymphoma (ortholog); Alzheimer's disease (ortholog); FOUND IN cell projection (ortholog); cell-cell junction (ortholog); clathrin-coated vesicle (ortholog) NW_004955445 15787496 15823859 - 102004432 AGCD01039855;AGCD01039856;GBCE01077323;GBDF01085611;XM_005392520 XP_005392577 MODEL 8856898 protein-coding LOC102011976 lysozyme C-like NW_004955470 12811161 12816338 - 102011976 AGCD01052943;GBCC01001129;XM_005400814 XP_005400871 MODEL 8742636 protein-coding Setd3 SET domain containing 3, actin N3(tau)-histidine methyltransferase ENCODES a protein that exhibits histone H3K36 methyltransferase activity (ortholog); histone H3K4 methyltransferase activity (ortholog); protein-L-histidine N-tele-methyltransferase activity (ortholog); INVOLVED IN actin modification (ortholog); peptidyl-histidine methylation (ortholog); peptidyl-lysine trimethylation (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog) NW_004955438 20754593 20826570 - 102028681 AGCD01035521;AGCD01035522;AGCD01035523;GBDF01008952;XM_005390415;XM_005390417 XP_005390472;XP_005390474 MODEL 8944146 protein-coding LOC102021695 olfactory receptor 4A15-like NW_004955511 61146 62063 - 102021695 AGCD01066313;XM_005408176 XP_005408233 MODEL 8993925 trna Trnae-cuc transfer RNA glutamic acid (anticodon CUC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955568;NW_004955418;NW_004955445;NW_004955465 63038;29926685;16045097;13921469 63109;29926756;16045169;13921540 -;+;+;+ 101978831 AGCD01019491;AGCD01039863;AGCD01050636;AGCD01074502 MODEL 8784244 protein-coding LOC102009660 protein HIRA ENCODES a protein that exhibits histone binding (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN gastrulation (ortholog); muscle cell differentiation (ortholog); nucleosome assembly (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Cardiac Fibrosis (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); protein-containing complex (ortholog) NW_004955442 18581370 18673590 + 102009660 AGCD01038011;AGCD01038012;GBCQ01129723;GBDI01264132;XM_005391780 XP_005391837 MODEL 8721345 protein-coding Ndufa10 NADH:ubiquinone oxidoreductase subunit A10 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); INVOLVED IN mitochondrial electron transport, NADH to ubiquinone (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955542 1329802 1370109 + 102020716 AGCD01071502;GBCB01005748;XM_005411173 XP_005411230 MODEL 8907210 protein-coding Repin1 replication initiator 1 ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of D-glucose import (ortholog); regulation of fatty acid transport (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); FOUND IN cytosol (ortholog); cytosolic ribosome (ortholog); lipid droplet (ortholog) NW_004955491 4973192 4977970 + 102018610 AGCD01060466;GBDF01002881;XM_005404768;XM_005404772;XM_005404774;XM_013504594 XP_005404825;XP_005404829;XP_005404831;XP_013360048 MODEL 39132715 snorna SNORD83 Small nucleolar RNA SNORD83 8864384 protein-coding C1d C1D nuclear receptor corepressor ENCODES a protein that exhibits DNA binding (ortholog); nuclear receptor binding (ortholog); RNA binding (ortholog); INVOLVED IN maturation of 5.8S rRNA (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN ribosome biogenesis pathway; FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); transcription repressor complex (ortholog) NW_004955424 16787094 16801600 + 102024132 AGCD01024753;GBDF01045582;XM_013514751 XP_013370205 MODEL 8719421 protein-coding Slc2a1 solute carrier family 2 member 1 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); dehydroascorbic acid transmembrane transporter activity (ortholog); fucose transmembrane transporter activity (ortholog); INVOLVED IN cellular hyperosmotic response (ortholog); cellular response to glucose starvation (ortholog); cellular response to mechanical stimulus (ortholog); PARTICIPATES IN facilitative sugar transporter mediated glucose transport pathway; Glut1 deficiency syndrome pathway; hypoxia inducible factor pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Ataxia (ortholog); benign epilepsy with centrotemporal spikes (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); caveola (ortholog) NW_004955537 2408042 2438788 - 102017914 AGCD01070929;AGCD01070930;GBCQ01066583;XM_005410625 XP_005410682 MODEL 8921301 ncrna LOC102008122 uncharacterized LOC102008122 NW_004955423 9990855 9994777 + 102008122 AGCD01023668;GBDF01225396;XR_001234046 MODEL 8937130 protein-coding Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); phosphatidylinositol kinase activity (ortholog); protein kinase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagosome maturation (ortholog); autophagy (ortholog); PARTICIPATES IN autophagy pathway; inositol metabolic pathway; phosphatidylinositol 3-kinase signaling pathway; ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN autolysosome (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog) NW_004955402 28081150 28195305 + 102021065 AGCD01000717;AGCD01000718;AGCD01000719;AGCD01000720;AGCD01000721;GBDJ01421951;GBDJ01421952;XM_005372847 XP_005372904 MODEL 8724624 protein-coding LOC102008516 epididymal secretory glutathione peroxidase NW_004955465 13787944 13795076 + 102008516 AGCD01050624;AGCD01050625;XM_005399016 XP_005399073 MODEL 39131465 protein-coding RBAK RB associated KRAB zinc finger 9044868 protein-coding Pnpla6 patatin like domain 6, lysophospholipase ENCODES a protein that exhibits lysophospholipase activity (ortholog); INVOLVED IN angiogenesis (ortholog); animal organ morphogenesis (ortholog); ASSOCIATED WITH amenorrhea (ortholog); amyotrophic lateral sclerosis (ortholog); Boucher-Neuhauser syndrome (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); membrane (ortholog) NW_004955563 1681112 1703287 - 102030676 AGCD01074156;AGCD01074157;GBDJ01081263;XM_005413181;XM_005413182;XM_005413184;XM_005413185 XP_005413238;XP_005413239;XP_005413241;XP_005413242 MODEL 8965618 protein-coding LOC102023408 neutrophil gelatinase-associated lipocalin-like NW_004955570 382343 384967 - 102023408 AGCD01074723;GBDJ01109690;XM_013509381 XP_013364835 MODEL 8719237 protein-coding Paaf1 proteasomal ATPase associated factor 1 ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog); FOUND IN proteasome complex (ortholog) NW_004955414 17625117 17658183 - 102011528 AGCD01015246;AGCD01015247;GBCE01097154;XM_005379933 XP_005379990 MODEL 8844418 ncrna LOC102024464 uncharacterized LOC102024464 NW_004955419 14164557 14168244 - 102024464 AGCD01020013;GBDJ01026578;XR_001233568 MODEL 8767907 protein-coding LOC102019219 olfactory receptor 2G2-like NW_004955581 837416 838405 + 102019219 AGCD01075698;XM_005414254 XP_005414311 MODEL 8979187 protein-coding Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-4,5-bisphosphate 3-kinase activity (ortholog); insulin receptor substrate binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); adipose tissue development (ortholog); autosome genomic imprinting (ortholog); PARTICIPATES IN adenosine signaling pathway; altered phosphatidylinositol 3-kinase signaling pathway; altered phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); adenoid cystic carcinoma (ortholog); Agenesis of Corpus Callosum (ortholog); FOUND IN intercalated disc (ortholog); lamellipodium (ortholog); phosphatidylinositol 3-kinase complex (ortholog) NW_004955420 8355415 8427024 + 102010490 AGCD01020717;AGCD01020718;AGCD01020719;GBBH01158420;GBCQ01061380;XM_013513381 XP_013368835 MODEL 8776015 protein-coding Tram1l1 translocation associated membrane protein 1 like 1 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955428 22645718 22647763 + 102027208 AGCD01028192;GBBH01122847;GBCE01049874;XM_005386808 XP_005386865 MODEL 8730047 protein-coding Pdia2 protein disulfide isomerase family A member 2 ENCODES a protein that exhibits protein-disulfide reductase activity (ortholog); INVOLVED IN platelet aggregation (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog) NW_004955442 16898563 16901867 - 102003700 AGCD01037921;GBBH01055065;XM_005391660;XM_005391661 XP_005391717;XP_005391718 MODEL 10130379 protein-coding LOC106147068 uncharacterized LOC106147068 NW_004955514 2589193 2590069 + 106147068 AGCD01067084;GBCE01063443;XM_013506860 XP_013362314 MODEL 9038898 pseudo LOC102007037 polyprenol reductase-like NW_004955426 12589238 12590965 + 102007037 AGCD01026340 MODEL 8903964 protein-coding Racgap1 Rac GTPase activating protein 1 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); gamma-tubulin binding (ortholog); INVOLVED IN actomyosin contractile ring assembly (ortholog); erythrocyte differentiation (ortholog); mitotic cytokinesis (ortholog); ASSOCIATED WITH congenital dyserythropoietic anemia type IIIb (ortholog); hepatocellular carcinoma (ortholog); polycystic ovary syndrome (ortholog); FOUND IN centralspindlin complex (ortholog); cleavage furrow (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955547 584885 615883 - 102010737 AGCD01072165;AGCD01072166;AGCD01072167;GBBH01067025;XM_005411860;XM_005411861;XM_005411862;XM_005411863 XP_005411917;XP_005411918;XP_005411919;XP_005411920 MODEL 8745001 protein-coding Slc6a12 solute carrier family 6 member 12 ENCODES a protein that exhibits gamma-aminobutyric acid:sodium:chloride symporter activity (ortholog); monocarboxylic acid transmembrane transporter activity (ortholog); INVOLVED IN cellular hyperosmotic response (ortholog); gamma-aminobutyric acid transport (ortholog); glycine betaine transport (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955454 6946486 6970247 + 102017095 AGCD01045274;GBDI01091148;XM_005396021;XM_005396022;XM_005396023;XM_005396024;XM_005396025;XM_005396026;XM_005396027;XM_013520166 XP_005396078;XP_005396079;XP_005396080;XP_005396081;XP_005396082;XP_005396083;XP_005396084;XP_013375620 MODEL 39132272 snorna SNORD83A small nucleolar RNA, C/D box 83A 8924153 protein-coding Prps1 phosphoribosyl pyrophosphate synthetase 1 ENCODES a protein that exhibits ADP binding (ortholog); AMP binding (ortholog); ATP binding (ortholog); INVOLVED IN 5-phosphoribose 1-diphosphate biosynthetic process (ortholog); AMP biosynthetic process (ortholog); animal organ regeneration (ortholog); PARTICIPATES IN de novo purine biosynthetic pathway; ASSOCIATED WITH Arts syndrome (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytosol (ortholog); protein-containing complex (ortholog); ribose phosphate diphosphokinase complex (ortholog) NW_004955490 8303775 8330713 - 102019073 AGCD01060279;AGCD01060280;GBBH01207860;XM_005404697 XP_005404754 MODEL 8864407 protein-coding C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 ENCODES a protein that exhibits glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity (ortholog); INVOLVED IN angiogenesis (ortholog); intestinal epithelial cell development (ortholog); kidney development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN membrane (ortholog) NW_004955432 14298873 14353824 + 102025281 AGCD01031042;GBBH01190693;XM_005388090 XP_005388147 MODEL 39133362 snrna U4 U4 spliceosomal RNA 8965813 ncrna Linc02915 long intergenic non-protein coding RNA 2915 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog) NW_004955416 6178585 6178974 + 102005140 AGCD01016933;XM_005415397 XP_005415454 MODEL 8824245 protein-coding Slc2a10 solute carrier family 2 member 10 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); dehydroascorbic acid transmembrane transporter activity (ortholog); INVOLVED IN artery development (ortholog); cell redox homeostasis (ortholog); D-glucose import across plasma membrane (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); aortic disease (ortholog); arterial tortuosity syndrome (ortholog); FOUND IN cytosol (ortholog); perinuclear region of cytoplasm (ortholog); plasma membrane (ortholog) NW_004955445 10708147 10722109 - 102016323 AGCD01039677;AGCD01039678;GBDF01078357;XM_005392370 XP_005392427 MODEL 8844224 ncrna LOC102018746 uncharacterized LOC102018746 NW_004955426 16039687 16052875 + 102018746 AGCD01026457;AGCD01026458;AGCD01026459;GBDF01075223;XR_261198 MODEL 8956721 pseudo LOC102017625 uncharacterized protein C11orf57 pseudogene NW_004955405 9393595 9394462 - 102017625 AGCD01004772 MODEL 8739981 ncrna LOC102008517 uncharacterized LOC102008517 NW_004955412 20462018 20473633 + 102008517 AGCD01013009;GBDF01220421;XR_260003 MODEL 8709129 protein-coding Wdr89 WD repeat domain 89 INVOLVED IN corpus callosum development (ortholog); ventricular system development (ortholog) NW_004955466 6171553 6204818 + 102007319 AGCD01050912;AGCD01050913;AGCD01050914;GBDF01276584;XM_005399148;XM_005399149;XM_005399150;XM_005399151;XM_013522006;XM_013522007 XP_005399205;XP_005399206;XP_005399207;XP_005399208;XP_013377460;XP_013377461 MODEL 8955450 pseudo LOC102021699 protein SET-like NW_004955523 1341486 1342336 - 102021699 AGCD01068514 MODEL 9000915 protein-coding Entpd8 ectonucleoside triphosphate diphosphohydrolase 8 ENCODES a protein that exhibits nucleoside diphosphate phosphatase activity (ortholog); ribonucleoside triphosphate phosphatase activity (ortholog); INVOLVED IN nucleoside diphosphate biosynthetic process (ortholog); nucleoside monophosphate biosynthetic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN membrane (ortholog) NW_004955513 5352843 5357671 - 102014159 AGCD01066968;GBCQ01038627;XM_005408613;XM_013506722 XP_005408670;XP_013362176 MODEL 8778323 protein-coding LOC102011979 protein unc-13 homolog B NW_004955472 869993 1019542 - 102011979 AGCD01053364;AGCD01053365;AGCD01053366;AGCD01053367;GBDF01156325;GBDK01081960;XM_013522964;XM_013522965;XM_013522966;XM_013522967 XP_013378418;XP_013378419;XP_013378420;XP_013378421 MODEL 8737061 protein-coding Setd4 SET domain containing 4 ENCODES a protein that exhibits histone H3K4 methyltransferase activity (ortholog); histone H4K20 methyltransferase activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); positive regulation of inflammatory response (ortholog); positive regulation of interleukin-6 production (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); Familial Platelet Disorder with Associated Myeloid Malignancy (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955407 35215247 35239488 - 102004560 AGCD01007732;AGCD01007733;GBCE01108284;XM_005375712;XM_005375720;XM_013504516;XM_013504518;XM_013504520;XM_013504521;XM_013504526;XM_013504535;XM_013504538 XP_005375769;XP_005375777;XP_013359970;XP_013359972;XP_013359974;XP_013359975;XP_013359980;XP_013359989;XP_013359992 MODEL 8811877 protein-coding LOC102005576 histone H2B NW_004955465 13104644 13110046 - 102005576 AGCD01050585;GBDF01248769;XM_005398947 XP_005399004 MODEL 8708630 ncrna LOC102017628 uncharacterized LOC102017628 NW_004955454 3267669 3273574 - 102017628 AGCD01045061;GBDF01144321;XR_262778 MODEL 10132148 ncrna LOC106147069 uncharacterized LOC106147069 NW_004955515 3679018 3718431 + 106147069 AGCD01067298;AGCD01067299;AGCD01067300;AGCD01067301;GBDI01252675;XR_001231785 MODEL 9000120 pseudo LOC102010397 forkhead box protein H1 pseudogene NW_004955431 1005823 1006729 - 102010397 AGCD01029888 MODEL 8932406 protein-coding Reps1 RALBP1 associated Eps domain containing 1 ENCODES a protein that exhibits SH3 domain binding (ortholog); ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); neurodegeneration with brain iron accumulation (ortholog); Neurodegeneration with Brain Iron Accumulation 7 (ortholog); FOUND IN clathrin-coated pit (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955436 20677676 20752842 + 102014485 AGCD01034035;AGCD01034036;AGCD01034037;AGCD01034038;GBBH01164522;GBBH01164524;XM_005389265;XM_005389266 XP_005389322;XP_005389323 MODEL 8729156 protein-coding LOC102019223 endothelial transcription factor GATA-2 NW_004955402 10652635 10674280 + 102019223 AGCD01000284;AGCD01000285;GBDI01323443;GBDK01085852;XM_013522231 XP_013377685 MODEL 8961332 protein-coding Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-4,5-bisphosphate 3-kinase activity (ortholog); insulin receptor substrate binding (ortholog); INVOLVED IN angiogenesis involved in wound healing (ortholog); embryonic cleavage (ortholog); endothelial cell proliferation (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; FasL mediated signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH colorectal cancer (ortholog); diffuse large B-cell lymphoma (ortholog); endometrial cancer (ortholog); FOUND IN brush border membrane (ortholog); cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955501 251829 381255 + 102015651 AGCD01064012;AGCD01064013;AGCD01064014;AGCD01064015;AGCD01064016;AGCD01064017;AGCD01064018;AGCD01064019;AGCD01064020;GBCQ01099651;XM_013505790 XP_013361244 MODEL 8705883 ncrna LOC102011583 uncharacterized LOC102011583 NW_004955436 8909255 8926076 + 102011583 AGCD01033752;AGCD01033753;AGCD01033754;GBDI01265317;XR_001234994;XR_261775;XR_261776 MODEL 39131710 snorna SNORA71 Small nucleolar RNA SNORA71 9025758 protein-coding Rubcnl rubicon like autophagy enhancer ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagosome-endosome fusion (ortholog); autophagosome-lysosome fusion (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN autophagosome membrane (ortholog) NW_004955431 140999 206570 - 102010828 AGCD01029856;AGCD01029857;AGCD01029858;AGCD01029859;GBDJ01387854;XM_005387542;XM_005387544;XM_005387545;XM_013515872;XM_013515873;XM_013515874;XM_013515875 XP_005387599;XP_005387601;XP_005387602;XP_013371326;XP_013371327;XP_013371328;XP_013371329 MODEL 9022701 protein-coding LOC102006651 sulfotransferase 1C2 NW_004955470 11975224 11987943 + 102006651 AGCD01052916;AGCD01052917;GBCQ01000070;XM_005400797;XM_005400798;XM_005400799 XP_005400854;XP_005400855;XP_005400856 MODEL 9001349 pseudo LOC102003773 60S ribosomal protein L27a pseudogene NW_004955491 6023903 6024578 + 102003773 AGCD01060512 MODEL 8812762 protein-coding Smim17 small integral membrane protein 17 NW_004955567 248113 256309 - 102011254 AGCD01074392;AGCD01074393;XM_005413284 XP_005413341 MODEL 8967025 ncrna LOC102023409 uncharacterized LOC102023409 NW_004955446 13005196 13038416 - 102023409 AGCD01040245;GBDF01200490;XR_001235643;XR_262396;XR_262397 MODEL 8709179 protein-coding Plcg2 phospholipase C gamma 2 ENCODES a protein that exhibits phosphatidylinositol phospholipase C activity (ortholog); phosphorylation-dependent protein binding (ortholog); phosphotyrosine residue binding (ortholog); INVOLVED IN activation of store-operated calcium channel activity (ortholog); antifungal innate immune response (ortholog); B cell activation (ortholog); PARTICIPATES IN erythropoietin signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); autoinflammation, antibody deficiency, and immune dysregulation syndrome (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular vesicle (ortholog) NW_004955522 4352890 4480735 + 102007928 AGCD01068416;AGCD01068417;AGCD01068418;AGCD01068419;AGCD01068420;AGCD01068421;AGCD01068422;GBCE01092331;GBDJ01422643;XM_013507097 XP_013362551 MODEL 8839738 protein-coding Pabir1 PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1 ENCODES a protein that exhibits protein phosphatase 2A binding (ortholog); protein phosphatase inhibitor activity (ortholog); protein serine/threonine phosphatase inhibitor activity (ortholog); INVOLVED IN mitotic G2/M transition checkpoint (ortholog); positive regulation of cell growth (ortholog); positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955434 4250105 4251508 - 102007927 AGCD01032155;GBDF01128644;XM_005388575 XP_005388632 MODEL 8699520 trna Trnae-uuc transfer RNA glutamic acid (anticodon UUC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955518;NW_004955533;NW_004955404;NW_004955468;NW_004955467 2739880;3278389;51044487;13117506;8514521 2739951;3278460;51044558;13117577;8514592 -;+;-;+;+ 101978830 AGCD01004542;AGCD01051452;AGCD01052199;AGCD01067784;AGCD01070411 MODEL 8896804 protein-coding Srsf6 serine and arginine rich splicing factor 6 ENCODES a protein that exhibits pre-mRNA binding (ortholog); RNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); mRNA splice site recognition (ortholog); negative regulation of gene expression (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH clear cell renal cell carcinoma (ortholog); colon adenocarcinoma (ortholog); Epidermal Hyperplasia (ortholog); FOUND IN nuclear speck (ortholog) NW_004955445 13663474 13669102 - 102026583 AGCD01039800;GBCE01012102;XM_005392500 XP_005392557 MODEL 8825329 protein-coding Rufy1 RUN and FYVE domain containing 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); SH2 domain binding (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); endosomal vesicle fusion (ortholog); protein transport (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 1 (ortholog); Sotos syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); early endosome membrane (ortholog) NW_004955408 946842 991717 - 102005110 AGCD01007944;AGCD01007945;GBCQ01003838;GBDJ01073789;XM_013507916 XP_013363370 MODEL 8755781 pseudo LOC102023410 cofilin-2 pseudogene NW_004955573 449805 451517 - 102023410 AGCD01074979 MODEL 8944602 protein-coding Ptafr platelet activating factor receptor ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); lipopolysaccharide immune receptor activity (ortholog); mitogen-activated protein kinase binding (ortholog); INVOLVED IN cellular response to 2-O-acetyl-1-O-hexadecyl-sn-glycero-3-phosphocholine (ortholog); cellular response to cAMP (ortholog); cellular response to fatty acid (ortholog); ASSOCIATED WITH Otitis Media with Effusion; Acute Experimental Pancreatitis (ortholog); acute kidney failure (ortholog) NW_004955452 7309854 7345579 - 102012825 AGCD01044144;AGCD01044145;GBCE01013423;XM_005394941;XM_013519732;XM_013519733 XP_005394998;XP_013375186;XP_013375187 MODEL 8932382 ncrna LOC102012784 uncharacterized LOC102012784 NW_004955428 17863566 17878885 + 102012784 AGCD01028052;GBCQ01167239;XR_261304 MODEL 8837795 protein-coding Tlcd3b TLC domain containing 3B ENCODES a protein that exhibits sphingosine N-acyltransferase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); negative regulation of fat cell differentiation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955493 6929477 6940109 + 102024921 AGCD01061148;AGCD01061149;GBDF01049970;XM_005405196;XM_005405197;XM_005405198;XM_005405199 XP_005405253;XP_005405254;XP_005405255;XP_005405256 MODEL 8739462 protein-coding Pbx3 PBX homeobox 3 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); dorsal spinal cord development (ortholog); neuron development (ortholog); ASSOCIATED WITH Congenital Heart Defects, Multiple Types (ortholog); esophagus squamous cell carcinoma (ortholog); X-linked cone-rod dystrophy 1 (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955419 2419081 2624299 - 102011770 AGCD01019677;AGCD01019678;AGCD01019679;AGCD01019680;GBCB01008423;GBDF01128616;XM_013513216 XP_013368670 MODEL 8821998 protein-coding Slc6a13 solute carrier family 6 member 13 ENCODES a protein that exhibits amino acid binding (ortholog); amino acid transmembrane transporter activity (ortholog); amino acid:sodium symporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); creatine transmembrane transport (ortholog); gamma-aminobutyric acid import (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955454 6866740 6940686 + 102015075 AGCD01045271;AGCD01045272;AGCD01045273;AGCD01045274;GBDK01348066;XM_005396014;XM_005396016;XM_005396017;XM_005396018;XM_013520165 XP_005396071;XP_005396073;XP_005396074;XP_005396075;XP_013375619 MODEL 9057699 protein-coding Riok3 RIO kinase 3 ENCODES a protein that exhibits caspase binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to dsDNA (ortholog); cellular response to dsRNA (ortholog); cellular response to virus (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Niemann-Pick disease type C1 (ortholog); FOUND IN preribosome, small subunit precursor (ortholog) NW_004955402 11649160 11670010 + 102005650 AGCD01000304;GBDF01008682;XM_005372704 XP_005372761 MODEL 8935846 protein-coding LOC102015714 olfactory receptor 2AT4-like NW_004955414 16679287 16683630 + 102015714 AGCD01015222;XM_005380450 XP_005380507 MODEL 8870401 protein-coding Srsf7 serine and arginine rich splicing factor 7 ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); negative regulation of mRNA splicing, via spliceosome (ortholog); RNA splicing (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH clear cell renal cell carcinoma (ortholog); Glomerular Hyperfiltration (ortholog); Lynch syndrome (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955441 6416709 6423185 - 102011592 AGCD01036918;AGCD01036919;AGCD01036920;GBCC01000687;XM_005390889;XM_005390891;XR_001235300;XR_001235301 XP_005390946;XP_005390948 MODEL 8737893 protein-coding C1galt1c1 C1GALT1 specific chaperone 1 ENCODES a protein that exhibits glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity (ortholog); INVOLVED IN platelet activation (ortholog); platelet morphogenesis (ortholog); positive regulation of transferase activity (ortholog); ASSOCIATED WITH atypical hemolytic-uremic syndrome (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog) NW_004955572 1254289 1258561 + 102030253 AGCD01074947;GBBH01193344;XM_005413651 XP_005413708 MODEL 10112753 ncrna LOC106147070 uncharacterized LOC106147070 NW_004955515 4129498 4133202 + 106147070 AGCD01067316;GBDJ01059081;XR_001231787;XR_001231788 MODEL 39133364 snrna U4 U4 spliceosomal RNA 8901511 protein-coding Pnpla7 patatin like domain 7, lysophospholipase ENCODES a protein that exhibits lysophospholipase activity (ortholog); INVOLVED IN phosphatidylcholine catabolic process (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); Autosomal Recessive Peripheral Neuropathy with or without Impaired Intellectual Development (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); lipid droplet (ortholog) NW_004955513 5376690 5436095 - 102016084 AGCD01066969;GBDF01043420;XM_005408619;XM_005408620;XM_005408621;XM_013506659;XM_013506660 XP_005408676;XP_005408677;XP_005408678;XP_013362113;XP_013362114 MODEL 8926718 pseudo LOC102011145 protein salvador homolog 1 pseudogene NW_004955532 3962130 3963932 - 102011145 AGCD01070305 MODEL 39131709 snorna SNORA71 Small nucleolar RNA SNORA71 8941553 ncrna LOC102009664 uncharacterized LOC102009664 NW_004955566 1804100 1820455 - 102009664 AGCD01074369;GBDI01312924;XR_001232397;XR_001232398;XR_001232399;XR_265024 MODEL 10310687 ncrna LOC106149904 uncharacterized LOC106149904 NW_004955456 13978348 13997437 + 106149904 AGCD01046629;AGCD01046630;GBDJ01210651;XR_001236373;XR_001236374 MODEL 9027502 protein-coding Sorcs1 sortilin related VPS10 domain containing receptor 1 ASSOCIATED WITH Alzheimer's disease 6 (ortholog); prostate cancer (ortholog); proteinuria (ortholog); FOUND IN membrane (ortholog) NW_004955485 3719006 4222143 + 102020807 AGCD01058546;AGCD01058547;AGCD01058548;AGCD01058549;AGCD01058550;AGCD01058551;AGCD01058552;AGCD01058553;AGCD01058554;AGCD01058555;AGCD01058556;GBBH01078182;XM_013504127 XP_013359581 MODEL 8760135 protein-coding LOC102024465 olfactory receptor 50-like NW_004955419 5591431 5598017 - 102024465 AGCD01019827;XM_005382925 XP_005382982 MODEL 8720990 pseudo LOC102008519 mitochondrial import inner membrane translocase subunit TIM14-like NW_004955412 23530210 23530974 + 102008519 AGCD01013090 MODEL 8712981 protein-coding Ndufa11 NADH:ubiquinone oxidoreductase subunit A11 ASSOCIATED WITH communication disorder (ortholog); mitochondrial complex I deficiency (ortholog); nuclear type mitochondrial complex I deficiency 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955495 3557016 3564999 + 102022306 AGCD01061862;GBDK01308518;XM_005405752 XP_005405809 MODEL 8887064 protein-coding LOC102010758 vomeronasal type-1 receptor 3-like NW_004955603 530648 531616 + 102010758 AGCD01076850;XM_005414847 XP_005414904 MODEL 8753405 pseudo LOC102008123 protein S100-A10 pseudogene NW_004955495 7868008 7869132 - 102008123 AGCD01062169 MODEL 8924826 trna Trnaf-aaa transfer RNA phenylalanine (anticodon AAA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955465 13258353 13258434 + 101978786 AGCD01050595 MODEL 8786505 pseudo LOC102017630 phosphatidylinositol 5-phosphate 4-kinase type-2 alpha pseudogene NW_004955406 10315071 10316248 - 102017630 AGCD01005855 MODEL 8831905 protein-coding Setd5 SET domain containing 5 ENCODES a protein that exhibits histone H3 methyltransferase activity (ortholog); histone H3K36 methyltransferase activity (ortholog); histone H3K9 methyltransferase activity (ortholog); INVOLVED IN cognition (ortholog); negative regulation of transcription by RNA polymerase III (ortholog); regulation of chromatin organization (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); Atrioventricular Septal Defect 2 (ortholog); autism spectrum disorder (ortholog); FOUND IN chromatin (ortholog); euchromatin (ortholog); nucleoplasm (ortholog) NW_004955561 968814 1091687 + 102029235 AGCD01073827;AGCD01073828;AGCD01073829;AGCD01073830;AGCD01073831;GBDJ01090978;XM_005413006;XM_005413007;XM_005413008;XM_005413009;XM_005413010;XM_005413012;XM_005413013;XM_005413014;XM_005413015;XM_013509075;XM_013509076;XM_013509077;XM_013509078 XP_005413063;XP_005413064;XP_005413065;XP_005413066;XP_005413067;XP_005413069;XP_005413070;XP_005413071;XP_005413072;XP_013364529;XP_013364530;XP_013364531;XP_013364532 MODEL 39132275 snorna SNORD83B small nucleolar RNA, C/D box 83B 8787087 protein-coding LOC102010401 carboxylesterase 1D-like NW_004955433 13332713 13350578 - 102010401 AGCD01031684;AGCD01031685;XM_013516104 XP_013371558 MODEL 8801141 protein-coding Sorcs2 sortilin related VPS10 domain containing receptor 2 INVOLVED IN intracellular protein transport (ortholog); long-term synaptic depression (ortholog); FOUND IN cytosol (ortholog); early endosome membrane (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955514 3053127 3390125 - 102008341 AGCD01067092;AGCD01067093;AGCD01067094;GBBH01141459;GBDJ01136170;XM_005408856 XP_005408913 MODEL 8769669 ncrna LOC102011584 uncharacterized LOC102011584 NW_004955436 18651414 18692957 + 102011584 AGCD01033976;AGCD01033977;AGCD01033978;GBDF01154303;XR_001234938;XR_001234939 MODEL 8957477 protein-coding LOC102019224 zinc finger protein 627-like NW_004955599 9018 47613 + 102019224 AGCD01076609;AGCD01076610;AGCD01076611;AGCD01076612;AGCD01076613;AGCD01076614;GBCQ01009278;XM_013510036 XP_013365490 MODEL 8704724 protein-coding Tsnaxip1 translin associated factor X interacting protein 1 ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog) NW_004955484 8868022 8889089 - 102024010 AGCD01058398;AGCD01058399;AGCD01058400;GBDK01187927;XM_005403624;XM_005403625;XM_013503887;XM_013503888 XP_005403681;XP_005403682;XP_013359341;XP_013359342 MODEL 8837505 protein-coding Setd6 SET domain containing 6, protein lysine methyltransferase ENCODES a protein that exhibits NF-kappaB binding (ortholog); protein-lysine N-methyltransferase activity (ortholog); S-adenosyl-L-methionine binding (ortholog); INVOLVED IN negative regulation of NF-kappaB transcription factor activity (ortholog); peptidyl-lysine monomethylation (ortholog); regulation of inflammatory response (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955433 15934091 15937738 + 102012677 AGCD01031777;GBBH01050346;GBCQ01063968;XM_005388507 XP_005388564 MODEL 8843458 protein-coding Lingo1 leucine rich repeat and Ig domain containing 1 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); INVOLVED IN central nervous system neuron development (ortholog); negative regulation of oligodendrocyte differentiation (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 64 (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN glutamatergic synapse (ortholog); presynapse (ortholog) NW_004955450 2435768 2493387 - 102023651 AGCD01042383;AGCD01042384;AGCD01042385;GBDI01366797;XM_005393495;XM_005393496;XM_005393497;XM_005393498;XM_013518819 XP_005393552;XP_005393553;XP_005393554;XP_005393555;XP_013374273 MODEL 8864402 protein-coding C1galt1c1l C1GALT1 specific chaperone 1 like NW_004955441 10846009 10847263 - 102024854 AGCD01037095;GBDI01279325;XM_005390923 XP_005390980 MODEL 39133370 snrna U4 U4 spliceosomal RNA 8807441 protein-coding LOC102011983 cystatin-9-like NW_004955415 30490600 30492806 - 102011983 AGCD01016664;GBDF01134641;XM_013512168 XP_013367622 MODEL 9041564 protein-coding LOC102005577 uncharacterized LOC102005577 NW_004955465 13237704 13244781 + 102005577 AGCD01050593;GBCE01177470;XM_013521808 XP_013377262 MODEL 8812611 ncrna LOC102007038 uncharacterized LOC102007038 NW_004955427 4191968 4222744 + 102007038 AGCD01026962;GBDF01207463;XR_261229 MODEL 8759306 protein-coding Pabir2 PABIR family member 2 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955473 207755 231781 + 102023025 AGCD01053833;GBDF01187951;XM_013523076;XM_013523077;XM_013523078;XM_013523079;XM_013523080;XM_013523081;XM_013523082;XM_013523083;XM_013523084 XP_013378530;XP_013378531;XP_013378532;XP_013378533;XP_013378534;XP_013378535;XP_013378536;XP_013378537;XP_013378538 MODEL 9055912 ncrna LOC102024466 uncharacterized LOC102024466 NW_004955420 11291287 11311386 - 102024466 AGCD01020801;GBDF01114691;XR_260704 MODEL 39133371 snrna U4 U4 spliceosomal RNA 8765419 protein-coding Ptar1 protein prenyltransferase alpha subunit repeat containing 1 FOUND IN mitochondrion (ortholog) NW_004955434 3309819 3356746 + 102003056 AGCD01032132;GBCQ01141133;XM_005388558 XP_005388615 MODEL 8897788 trna Trnaf-gaa transfer RNA phenylalanine (anticodon GAA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978787 AGCD01003541;AGCD01050597;AGCD01050631;AGCD01050636;AGCD01057309;AGCD01062085;AGCD01066489;AGCD01066490 MODEL 8860920 pseudo LOC102017634 matrin-3 pseudogene NW_004955408 32748713 32750084 + 102017634 AGCD01008854 MODEL 8863296 protein-coding LOC102012785 histone H1x ASSOCIATED WITH alkaptonuria (ortholog); Animal Disease Models (ortholog); COVID-19 (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955429 13671907 13673689 - 102012785 AGCD01028760;AGCD01028761;GBBH01032046;GBCE01001858;XM_005387002 XP_005387059 MODEL 9035918 protein-coding Reps2 RALBP1 associated Eps domain containing 2 ASSOCIATED WITH autistic disorder (ortholog); Breast Neoplasms (ortholog); developmental and epileptic encephalopathy 1 (ortholog) NW_004955519 1131027 1358313 - 102005076 AGCD01067882;AGCD01067883;AGCD01067884;AGCD01067885;AGCD01067886;AGCD01067887;AGCD01067888;AGCD01067889;GBCE01084254;GBDJ01193078;XM_005409136 XP_005409193 MODEL 9008923 protein-coding Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta INVOLVED IN B cell activation (ortholog); B cell homeostasis (ortholog); cell surface receptor signaling pathway (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; FasL mediated signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); Chlamydia pneumonia (ortholog); chromosome 1p36 deletion syndrome (ortholog); FOUND IN phosphatidylinositol 3-kinase complex, class IA (ortholog) NW_004955486 3813923 3837563 - 102020126 AGCD01059038;AGCD01059039;GBBH01114424;XM_005404031;XM_013504160;XM_013504162;XM_013504163;XM_013504164 XP_005404088;XP_013359614;XP_013359616;XP_013359617;XP_013359618 MODEL 8977026 protein-coding LOC102015716 scavenger receptor cysteine-rich domain-containing protein SCART1-like NW_004955477 11165644 11181951 + 102015716 AGCD01055718;AGCD01055719;GBDI01371050;XM_013503025 XP_013358479 MODEL 8874397 pseudo LOC102006654 40S ribosomal protein SA-like NW_004955414 3111109 3159323 + 102006654 AGCD01014815;AGCD01014816 MODEL 8907005 protein-coding Slc2a11 solute carrier family 2 member 11 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); fructose transmembrane transporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); fructose transmembrane transport (ortholog); ASSOCIATED WITH agammaglobulinemia 2 (ortholog); Coffin-Siris syndrome 3 (ortholog); epilepsy (ortholog); FOUND IN cell junction (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955455 8374144 8399766 - 102010337 AGCD01045888;GBCE01119522;XM_005396414;XM_005396415 XP_005396471;XP_005396472 MODEL 8905772 protein-coding Riox1 ribosomal oxygenase 1 ENCODES a protein that exhibits 2-oxoglutarate-dependent dioxygenase activity (ortholog); histone H3K36 demethylase activity (ortholog); histone H3K4me/H3K4me2/H3K4me3 demethylase activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of osteoblast differentiation (ortholog); regulation of DNA repair (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955523 1907570 1910038 - 102009980 AGCD01068549;AGCD01068550;GBBH01126419;XM_013507126 XP_013362580 MODEL 8836426 protein-coding LOC102021700 ubiquitin-conjugating enzyme E2 D4-like NW_004955525 2619948 2620976 - 102021700 AGCD01069098;GBDF01225732;XM_005409736 XP_005409793 MODEL 8739089 protein-coding LOC102019231 multiple PDZ domain protein-like NW_004955849 9290 12584 + 102019231 AGCD01078489;XM_005415135 XP_005415192 MODEL 8916684 protein-coding Plch1 phospholipase C eta 1 ENCODES a protein that exhibits calcium-dependent phospholipase C activity (ortholog); INVOLVED IN phosphatidylinositol-mediated signaling (ortholog); ASSOCIATED WITH Holoprosencephaly 14 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955448 6588885 6815087 - 102015257 AGCD01041393;GBDJ01114723;XM_005393067;XM_013518675;XM_013518676;XM_013518677 XP_005393124;XP_013374129;XP_013374130;XP_013374131 MODEL 8802893 protein-coding Ppdpf pancreatic progenitor cell differentiation and proliferation factor INVOLVED IN liver development (ortholog); TOR signaling (ortholog); TORC1 signaling (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); autosomal recessive dyskeratosis congenita 5 (ortholog); benign familial infantile seizures 6 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955528 701182 718037 - 102010406 AGCD01069542;AGCD01069543;AGCD01069544;GBCE01002191;GBCQ01007600;XM_013507430 XP_013362884 MODEL 8989125 protein-coding LOC102009665 antileukoproteinase NW_004955445 12093023 12095345 + 102009665 AGCD01039735;GBDI01080100;XM_013518386 XP_013373840 MODEL 8893022 protein-coding Pnpla8 patatin like domain 8, phospholipase A2 ENCODES a protein that exhibits calcium-independent phospholipase A2 activity (ortholog); INVOLVED IN arachidonate metabolic process (ortholog); arachidonate secretion (ortholog); cardiolipin metabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Mitochondrial Myopathy with Lactic Acidosis (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN membrane (ortholog); mitochondrion (ortholog); peroxisomal membrane (ortholog) NW_004955410 12715072 12753433 - 102011514 AGCD01010864;GBDK01277528;XM_005377305;XM_005377306 XP_005377362;XP_005377363 MODEL 8892831 protein-coding Rack1 receptor for activated C kinase 1 ENCODES a protein that exhibits BH3 domain binding (ortholog); cyclin binding (ortholog); cysteine-type endopeptidase activator activity involved in apoptotic process (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to growth factor stimulus (ortholog); negative regulation of cell growth (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; insulin-like growth factor signaling pathway; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH morphine dependence (ortholog); Mouth Neoplasms (ortholog); squamous cell carcinoma (ortholog); FOUND IN cell body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955530 78488 83297 + 102003173 AGCD01069830;AY533219;GBDF01008806;XM_005410096 AAS59422;XP_005410153 MODEL 8743051 protein-coding Setd7 SET domain containing 7, histone lysine methyltransferase ENCODES a protein that exhibits chromatin binding (ortholog); histone H3 methyltransferase activity (ortholog); histone methyltransferase activity (ortholog); INVOLVED IN chromatin organization (ortholog); DNA damage response (ortholog); heterochromatin organization (ortholog); PARTICIPATES IN carnitine biosynthetic pathway; histone modification pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH cognitive disorder (ortholog); extrahepatic cholestasis (ortholog); fetal alcohol spectrum disorder (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog) NW_004955428 4131431 4178250 + 102017588 AGCD01027667;AGCD01027668;GBCE01001559;XM_005386687 XP_005386744 MODEL 8775596 protein-coding Slc2a12 solute carrier family 2 member 12 INVOLVED IN D-glucose transmembrane transport (ortholog); FOUND IN membrane (ortholog) NW_004955439 2482440 2539510 + 102007699 AGCD01035651;AGCD01035652;GBDF01156647;XM_005390508;XM_005390509;XM_013517402 XP_005390565;XP_005390566;XP_013372856 MODEL 10080999 protein-coding Ndufa12 NADH:ubiquinone oxidoreductase subunit A12 INVOLVED IN mitochondrial ATP synthesis coupled electron transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); Leigh disease (ortholog); nuclear type mitochondrial complex I deficiency 23 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955405 31607182 31621538 - 106149466 AGCD01005299;GBBH01030741;GBDF01052506;XM_013518426 XP_013373880 MODEL 8766212 protein-coding Rufy2 RUN and FYVE domain containing 2 ENCODES a protein that exhibits SH3 domain binding (ortholog); FOUND IN cytoplasm (ortholog) NW_004955425 20632271 20658582 - 102007573 AGCD01025751;GBCE01097206;GBDF01000428;XM_005385993;XM_005385995;XM_005385997;XM_013514826;XR_261163 XP_005386050;XP_005386052;XP_005386054;XP_013370280 MODEL 8878865 protein-coding Pbxip1 PBX homeobox interacting protein 1 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); transcription coactivator activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN articular cartilage development (ortholog); cell adhesion (ortholog); cell migration (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); COVID-19 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955545 1451541 1467856 - 102015453 AGCD01071855;GBDF01155848;XM_005411530;XM_005411531;XM_013508336 XP_005411587;XP_005411588;XP_013363790 MODEL 8952288 pseudo LOC102018749 serine/threonine-protein kinase WNK1-like NW_004955427 10801144 10809468 - 102018749 AGCD01027157 MODEL 8957493 protein-coding Wdr90 WD repeat domain 90 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN centriole elongation (ortholog); cilium assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955442 16534951 16552856 - 102020724 AGCD01037901;GBDF01080193;XM_005391622;XM_013517761;XM_013517762;XR_001235382 XP_005391679;XP_013373215;XP_013373216 MODEL 9029469 pseudo LOC102011585 small ubiquitin-related modifier 2 pseudogene NW_004955437 7866518 7866791 + 102011585 AGCD01034470 MODEL 39131708 snorna SNORA71 Small nucleolar RNA SNORA71 8700766 protein-coding Smim18 small integral membrane protein 18 NW_004955463 7057648 7071593 + 102024774 AGCD01049709;AGCD01049710;GBBH01116730;XM_005398367;XM_013521494;XM_013521495 XP_005398424;XP_013376948;XP_013376949 MODEL 8975534 ncrna LOC102015720 uncharacterized LOC102015720 NW_004955481 4043077 4053360 - 102015720 AGCD01056930;AGCD01056931;GBDF01016521;XR_263776 MODEL 8835860 protein-coding Entr1 endosome associated trafficking regulator 1 INVOLVED IN endocytic recycling (ortholog); positive regulation of cilium assembly (ortholog); positive regulation of protein localization to cilium (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); early endosome (ortholog) NW_004955513 4322002 4329479 + 102026141 AGCD01066925;AGCD01066926;GBCB01003691;GBDF01008499;XM_005408649 XP_005408706 MODEL 8892077 ncrna LOC102006656 uncharacterized LOC102006656 NW_004955415 5972499 5982441 - 102006656 AGCD01016005;GBDJ01024058;XR_260272 MODEL 9042174 protein-coding Pc pyruvate carboxylase ENCODES a protein that exhibits biotin binding (ortholog); identical protein binding (ortholog); pyruvate carboxylase activity (ortholog); INVOLVED IN gluconeogenesis (ortholog); NADH metabolic process (ortholog); NADP metabolic process (ortholog); PARTICIPATES IN alanine metabolic pathway; citric acid cycle pathway; fructose-1,6-bisphosphatase deficiency pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); bipolar disorder (ortholog); Burkitt lymphoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial matrix (ortholog) NW_004955422 18421100 18536591 + 102028201 AGCD01022949;AGCD01022950;AGCD01022951;GBCQ01011657;XM_005384364;XM_005384365;XM_005384366;XM_005384367;XM_005384368;XM_005384369;XM_005384370 XP_005384421;XP_005384422;XP_005384423;XP_005384424;XP_005384425;XP_005384426;XP_005384427 MODEL 8875020 ncrna LOC102021702 uncharacterized LOC102021702 NW_004955531 3528962 3534395 + 102021702 AGCD01070075;GBDF01022393;XR_264714 MODEL 9048585 ncrna LOC102010759 uncharacterized LOC102010759 NW_004955403 1971342 1976194 - 102010759 AGCD01001728;GBDF01124321;XR_259134 MODEL 39131303 protein-coding C1orf56 chromosome 1 open reading frame 56 9045982 pseudo LOC102011985 mitochondrial import inner membrane translocase subunit Tim8 B pseudogene NW_004955416 17979253 17979575 - 102011985 AGCD01017393 MODEL 8836712 pseudo LOC102005578 Y+L amino acid transporter 2 pseudogene NW_004955466 2383953 2385889 - 102005578 AGCD01050736 MODEL 8969991 protein-coding LOC102007039 chromosome unknown open reading frame, human C4orf51 ASSOCIATED WITH methylmalonic acidemia cblA type (ortholog) NW_004955428 1503025 1543635 + 102007039 AGCD01027613;AGCD01027614;GBDF01008625;XM_005386650;XM_005386651;XM_005386652 XP_005386707;XP_005386708;XP_005386709 MODEL 9019461 protein-coding LOC102017635 olfactory receptor 6C3-like NW_004955458 2547175 2548122 - 102017635 AGCD01047237;XM_005397495 XP_005397552 MODEL 8756240 protein-coding Sorcs3 sortilin related VPS10 domain containing receptor 3 INVOLVED IN learning (ortholog); memory (ortholog); postsynaptic modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog); postsynaptic density membrane (ortholog) NW_004955485 5474081 6048912 - 102013176 AGCD01058597;AGCD01058598;AGCD01058599;AGCD01058600;AGCD01058601;AGCD01058602;AGCD01058603;AGCD01058604;AGCD01058605;GBDF01016069;XM_005403919 XP_005403976 MODEL 9000649 ncrna LOC102003774 uncharacterized LOC102003774 NW_004955422 13750163 13762795 - 102003774 AGCD01022838;GBCB01073765;XR_001233882;XR_001233883;XR_260871;XR_260872 MODEL 8934594 protein-coding Pdia3 protein disulfide isomerase family A member 3 ENCODES a protein that exhibits identical protein binding (ortholog); lncRNA binding (ortholog); MHC class I protein binding (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); cellular response to nonylphenol (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); asphyxia neonatorum (ortholog); autoimmune hepatitis (ortholog); FOUND IN acrosomal vesicle (ortholog); apical plasma membrane (ortholog); cell surface (ortholog) NW_004955416 10197957 10221104 + 102008100 AGCD01017117;AGCD01017118;AGCD01017119;GBBH01003859;GBDF01008862;XM_013512559 XP_013368013 MODEL 10176920 protein-coding LOC106147071 spermatogenesis-associated protein 31A6-like NW_004955515 3737183 3738035 + 106147071 AGCD01067302;GBBH01073597;XM_013506863 XP_013362317 MODEL 10178266 ncrna LOC106149905 uncharacterized LOC106149905 NW_004955457 7725658 7747335 - 106149905 AGCD01046885;AGCD01046886;GBDK01094097;XR_001236376 MODEL 8879818 protein-coding Pxdn peroxidasin ENCODES a protein that exhibits extracellular matrix structural constituent (ortholog); heme binding (ortholog); laminin-1 binding (ortholog); INVOLVED IN angiogenesis (ortholog); basement membrane assembly (ortholog); basement membrane organization (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); anterior segment dysgenesis (ortholog); anterior segment dysgenesis 7 (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); collagen-containing extracellular matrix (ortholog) NW_004955487 4867427 4936454 + 102021132 AGCD01059317;GBCE01009660;GBCE01009664;XM_005404386;XM_005404387 XP_005404443;XP_005404444 MODEL 8895123 protein-coding Pik3cg phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-4,5-bisphosphate 3-kinase activity (ortholog); 1-phosphatidylinositol-4-phosphate 3-kinase activity (ortholog); INVOLVED IN behavioral response to pain (ortholog); cellular response to cAMP (ortholog); G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; insulin signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); Alzheimer's disease (ortholog); asthma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955410 11402476 11433335 + 102028939 AGCD01010824;GBDK01327812;XM_005377268;XM_005377269;XM_005377270;XM_013510652;XM_013510653 XP_005377325;XP_005377326;XP_005377327;XP_013366106;XP_013366107 MODEL 8949061 protein-coding Prps1l1 phosphoribosyl pyrophosphate synthetase 1 like 1 INVOLVED IN male gonad development (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955410 20987289 20988852 - 102024983 AGCD01011054;GBDF01044095;XM_005377343 XP_005377400 MODEL 8728466 protein-coding Lingo2 leucine rich repeat and Ig domain containing 2 INVOLVED IN positive regulation of synapse assembly (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); Liver Neoplasms (ortholog); megacolon (ortholog); FOUND IN glutamatergic synapse (ortholog); synaptic membrane (ortholog) NW_004955472 5790522 6971152 + 102017227 AGCD01053584;AGCD01053585;AGCD01053586;AGCD01053587;AGCD01053588;AGCD01053589;AGCD01053590;AGCD01053591;AGCD01053592;AGCD01053593;AGCD01053594;AGCD01053595;AGCD01053596;AGCD01053597;AGCD01053598;AGCD01053599;AGCD01053600;AGCD01053601;AGCD01053602;AGCD01053603;AGCD01053604;AGCD01053605;AGCD01053606;AGCD01053607;AGCD01053608;AGCD01053609;AGCD01053610;AGCD01053611;AGCD01053612;AGCD01053613;GBDK01171049;XM_005401120;XM_005401121;XM_005401122;XR_001237087;XR_263553;XR_263554;XR_263555;XR_263556;XR_263557;XR_263558;XR_263559 XP_005401177;XP_005401178;XP_005401179 MODEL 8859111 protein-coding Smim19 small integral membrane protein 19 ASSOCIATED WITH Idiopathic Basal Ganglia Calcification 1 (ortholog); IMMUNODEFICIENCY 15 (ortholog); immunodeficiency 15B (ortholog) NW_004955536 380062 384608 - 102005633 AGCD01070725;GBCB01001967;GBDK01136291;XM_013507726 XP_013363180 MODEL 8770545 protein-coding Tlcd4 TLC domain containing 4 NW_004955435 278795 351707 + 102020947 AGCD01032720;AGCD01032721;AGCD01032722;GBCQ01033522;XM_013516468;XM_013516469;XM_013516470;XM_013516471;XM_013516472;XM_013516473;XM_013516474;XM_013516475;XM_013516476 XP_013371922;XP_013371923;XP_013371924;XP_013371925;XP_013371926;XP_013371927;XP_013371928;XP_013371929;XP_013371930 MODEL 9002652 pseudo LOC102024469 E3 ubiquitin-protein ligase RLIM pseudogene NW_004955420 13292515 13293631 + 102024469 AGCD01020919 MODEL 39133372 snrna U4 U4 spliceosomal RNA 8827095 protein-coding Pxdnl peroxidasin like NW_004955454 10993294 11442351 - 102003091 AGCD01045376;AGCD01045377;AGCD01045378;AGCD01045379;AGCD01045380;AGCD01045381;AGCD01045382;AGCD01045383;AGCD01045384;AGCD01045385;AGCD01045386;AGCD01045387;AGCD01045388;GBDI01306602;XM_013520015 XP_013375469 MODEL 8766898 pseudo LOC102010402 small integral membrane protein 15-like NW_004955434 9168651 9169463 + 102010402 AGCD01032291 MODEL 8873066 protein-coding Slc6a14 solute carrier family 6 member 14 ENCODES a protein that exhibits (R)-carnitine transmembrane transporter activity (ortholog); alanine transmembrane transporter activity (ortholog); aromatic amino acid transmembrane transporter activity (ortholog); INVOLVED IN (R)-carnitine transmembrane transport (ortholog); alanine transport (ortholog); amino acid import across plasma membrane (ortholog); ASSOCIATED WITH Acidoses (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog) NW_004955534 3463057 3488577 - 102020710 AGCD01070584;GBDJ01165487;XM_005410472;XM_005410473;XM_013507709 XP_005410529;XP_005410530;XP_013363163 MODEL 8786913 protein-coding Rad1 RAD1 checkpoint DNA exonuclease INVOLVED IN cellular response to ionizing radiation (ortholog); DNA damage checkpoint signaling (ortholog); meiotic recombination checkpoint signaling (ortholog); ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN checkpoint clamp complex (ortholog); chromosome (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955426 20035605 20042340 - 102005730 AGCD01026560;GBCB01073528;XM_005386188;XM_005386189;XM_005386190;XM_013514969;XM_013514970;XM_013514971 XP_005386245;XP_005386246;XP_005386247;XP_013370423;XP_013370424;XP_013370425 MODEL 8841640 protein-coding LOC102021703 IQ domain-containing protein F1 ENCODES a protein that exhibits calmodulin binding (ortholog); INVOLVED IN positive regulation of acrosome reaction (ortholog); positive regulation of flagellated sperm motility involved in capacitation (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955532 3559990 3561238 - 102021703 AGCD01070287;GBDF01010023;XM_005410328 XP_005410385 MODEL 9024193 protein-coding Ndufa13 NADH:ubiquinone oxidoreductase subunit A13 INVOLVED IN cellular response to interferon-beta (ortholog); cellular response to retinoic acid (ortholog); extrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH cerebral infarction (ortholog); genetic disease (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog) NW_004955524 2426604 2433682 - 102014483 AGCD01068817;AGCD01068818;GBDF01008366;XM_013507297;XM_013507298 XP_013362751;XP_013362752 MODEL 8790510 protein-coding Srsf9 serine and arginine rich splicing factor 9 ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN negative regulation of mRNA splicing, via spliceosome (ortholog); response to alkaloid (ortholog); response to toxic substance (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Experimental Autoimmune Encephalomyelitis (ortholog); human immunodeficiency virus infectious disease (ortholog); short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955455 11175760 11183597 + 102010549 AGCD01045985;AGCD01045986;GBDF01090183;XM_005396505 XP_005396562 MODEL 9058092 pseudo LOC102018751 protein DBF4 homolog A pseudogene NW_004955428 18917893 18919918 - 102018751 AGCD01028074 MODEL 8917689 protein-coding Rufy3 RUN and FYVE domain containing 3 ENCODES a protein that exhibits dynactin binding (ortholog); INVOLVED IN actin filament organization (ortholog); negative regulation of axonogenesis (ortholog); positive regulation of axon extension (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); skin disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955447 2200788 2266008 - 102022439 AGCD01040535;AGCD01040536;GBCE01184705;XM_005392776;XM_005392777;XM_005392778;XM_005392779;XM_013518505;XM_013518506 XP_005392833;XP_005392834;XP_005392835;XP_005392836;XP_013373959;XP_013373960 MODEL 8762053 protein-coding Rer1 retention in endoplasmic reticulum sorting receptor 1 ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); INVOLVED IN neuromuscular junction development (ortholog); positive regulation of protein localization to plasma membrane (ortholog); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); dilated cardiomyopathy 1LL (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog) NW_004955486 8791457 8802691 - 102007903 AGCD01059156;GBDJ01075964;XM_005404170;XM_005404171 XP_005404227;XP_005404228 MODEL 8943241 protein-coding LOC102011150 uncharacterized LOC102011150 NW_004955440 3381418 3382941 - 102011150 AGCD01036241;GBDF01052510;XM_005390767;XM_013517492 XP_005390824;XP_013372946 MODEL 8867165 protein-coding Pgap4 post-GPI attachment to proteins GalNAc transferase 4 ENCODES a protein that exhibits glycosyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH fructose-1,6-bisphosphatase deficiency (ortholog); hereditary fructose intolerance syndrome (ortholog); intellectual disability (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955419 24334402 24344390 + 102009059 AGCD01020342;GBCE01045694;XM_005382800 XP_005382857 MODEL 8815794 protein-coding Wdr91 WD repeat domain 91 ENCODES a protein that exhibits phosphatidylinositol 3-kinase inhibitor activity (ortholog); INVOLVED IN early endosome to late endosome transport (ortholog); regulation of protein catabolic process (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytosol (ortholog); early endosome membrane (ortholog); endosome membrane (ortholog) NW_004955494 7441880 7470174 + 102013426 AGCD01061552;GBDF01015655;XM_005405487;XM_005405488 XP_005405544;XP_005405545 MODEL 8749247 protein-coding LOC102019232 doublesex- and mab-3-related transcription factor C1-like NW_004956354 942 4659 + 102019232 AGCD01079474;GBDF01153143;XM_005415198 XP_005415255 MODEL 8915468 protein-coding Riox2 ribosomal oxygenase 2 ENCODES a protein that exhibits identical protein binding (ortholog); peptidyl-histidine dioxygenase activity (ortholog); transcription corepressor activity (ortholog); ASSOCIATED WITH Lung Neoplasms (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955407 173590 203401 + 102011277 AGCD01006731;AGCD01006732;AGCD01006733;GBCQ01154799;XM_005375492;XM_005375494 XP_005375549;XP_005375551 MODEL 8789342 ncrna LOC102015721 uncharacterized LOC102015721 NW_004955481 10034469 10041461 + 102015721 AGCD01057135;GBBH01033155;XR_001230930 MODEL 8743323 protein-coding Ndufa2 NADH:ubiquinone oxidoreductase subunit A2 INVOLVED IN blastocyst hatching (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); autosomal dominant intellectual developmental disorder 31 (ortholog); Disease Progression (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955418 52952 55060 + 102028415 AGCD01018665;GBDF01051335;XM_005382014 XP_005382071 MODEL 8946332 pseudo LOC102006657 anion exchange transporter-like NW_004955474 8327235 8329031 - 102006657 AGCD01054549 MODEL 8808359 protein-coding Pabpc1 poly(A) binding protein cytoplasmic 1 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA binding (ortholog); poly(A) binding (ortholog); INVOLVED IN CRD-mediated mRNA stabilization (ortholog); negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (ortholog); negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); PARTICIPATES IN microRNA pathway; translation initiation pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Cohen syndrome (ortholog); COVID-19 (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cell leading edge (ortholog); cytoplasm (ortholog) NW_004955417 15872906 15885246 - 102018829 AGCD01018245;GBBH01002998;GBDF01010623;XM_005381871 XP_005381928 MODEL 9035347 protein-coding Setd9 SET domain containing 9 ASSOCIATED WITH high grade glioma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrion (ortholog) NW_004955446 10994388 11004034 - 102013459 AGCD01040194;GBDF01050852;GBDF01050854;XM_013518469 XP_013373923 MODEL 15036848 trna Trnag-acc transfer RNA glycine (anticodon ACC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978843 8818003 pseudo LOC102011989 F-actin-capping protein subunit alpha-1 pseudogene NW_004955481 9008939 9010077 - 102011989 AGCD01057092 MODEL 9017677 protein-coding C1qa complement C1q A chain INVOLVED IN astrocyte activation (ortholog); complement activation, classical pathway (ortholog); complement-mediated synapse pruning (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); basal cell carcinoma (ortholog); Brain Injuries (ortholog); FOUND IN complement component C1q complex (ortholog); extracellular region (ortholog); extrinsic component of postsynaptic membrane (ortholog) NW_004955452 2753362 2756220 + 102012920 AGCD01043903;GBDK01006456;XM_013519754 XP_013375208 MODEL 8748095 protein-coding Slc2a13 solute carrier family 2 member 13 ENCODES a protein that exhibits ATPase binding (ortholog); myo-inositol transmembrane transporter activity (ortholog); myo-inositol:proton symporter activity (ortholog); INVOLVED IN myo-inositol transport (ortholog); positive regulation of amyloid-beta formation (ortholog); ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN astrocyte end-foot (ortholog); cell body (ortholog); cell periphery (ortholog) NW_004955505 395380 664272 + 102003159 AGCD01064957;AGCD01064958;AGCD01064959;AGCD01064960;AGCD01064961;GBDK01214301;XM_013505919 XP_013361373 MODEL 8745953 protein-coding Tram2 translocation associated membrane protein 2 INVOLVED IN collagen biosynthetic process (ortholog); protein insertion into ER membrane (ortholog) NW_004955411 5598612 5620685 + 102028508 AGCD01011652;AGCD01011653;AGCD01011654;GBBH01091491;XM_005377655 XP_005377712 MODEL 8727518 protein-coding Tlcd5 TLC domain containing 5 ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog) NW_004955412 21344464 21350675 + 102011421 AGCD01013021;GBCE01163283;XM_005378348;XM_005378349;XM_005378350 XP_005378405;XP_005378406;XP_005378407 MODEL 8945640 ncrna LOC102006658 uncharacterized LOC102006658 NW_004955415 30510340 30526011 + 102006658 AGCD01016664;GBDF01195211;XR_001233255;XR_001233256;XR_001233257;XR_001233258 MODEL 9023985 pseudo LOC102007040 olfactory receptor 13A1-like NW_004955507 6432557 6457489 + 102007040 AGCD01065716;AGCD01065717 MODEL 9014306 pseudo LOC102011588 uncharacterized LOC102011588 NW_004955437 2264085 2299089 - 102011588 AGCD01034263 MODEL 39131711 snorna SNORA71 Small nucleolar RNA SNORA71 8779368 ncrna LOC102017636 uncharacterized LOC102017636 NW_004955459 2075530 2078673 + 102017636 AGCD01047982;GBCQ01045566;XR_263005 MODEL 8749244 protein-coding LOC102018754 vomeronasal type-1 receptor 90-like NW_004955429 12434233 12435165 + 102018754 AGCD01028716;XM_005387250 XP_005387307 MODEL 39131390 protein-coding PPDPF pancreatic progenitor cell differentiation and proliferation factor 10303271 ncrna LOC106147072 uncharacterized LOC106147072 NW_004955515 1253399 1273984 + 106147072 AGCD01067222;AGCD01067223;XR_001231789;XR_001231790;XR_001231791 MODEL 8782728 protein-coding Plch2 phospholipase C eta 2 ENCODES a protein that exhibits phosphatidylinositol phospholipase C activity (ortholog); phospholipase C activity (ortholog); INVOLVED IN phosphatidylinositol metabolic process (ortholog); phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); dilated cardiomyopathy 1LL (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955486 8717799 8785144 - 102007236 AGCD01059155;AGCD01059156;GBBH01188538;XM_013504169;XM_013504170;XM_013504172;XM_013504173;XM_013504174 XP_013359623;XP_013359624;XP_013359626;XP_013359627;XP_013359628 MODEL 8973920 protein-coding LOC102009673 E3 ubiquitin-protein ligase UHRF1 NW_004955777 1489 17093 + 102009673 AGCD01078327;GBDF01156556;GBDF01156558;XM_005415110 XP_005415167 MODEL 9009717 protein-coding Pnpo pyridoxamine 5'-phosphate oxidase ENCODES a protein that exhibits FMN binding (ortholog); protein homodimerization activity (ortholog); pyridoxal phosphate binding (ortholog); INVOLVED IN pyridoxal phosphate biosynthetic process (ortholog); pyridoxal phosphate metabolic process (ortholog); pyridoxamine metabolic process (ortholog); PARTICIPATES IN hypophosphatasia pathway; vitamin B6 metabolic pathway; ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 5 (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955451 13184861 13190933 - 102011938 AGCD01043458;GBDI01173325;XM_005394258 XP_005394315 MODEL 8849879 protein-coding LOC102010760 retinitis pigmentosa 9 protein NW_004955617 180456 193992 - 102010760 AGCD01077272;AGCD01077273;GBCE01004432;GBCE01098928;XM_013510144 XP_013365598 MODEL 8943753 pseudo LOC102019234 trifunctional purine biosynthetic protein adenosine-3 pseudogene NW_004955403 4274146 4277480 - 102019234 AGCD01001784 MODEL 8942629 protein-coding Pcare photoreceptor cilium actin regulator INVOLVED IN photoreceptor cell outer segment organization (ortholog); protein localization to photoreceptor outer segment (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN cilium (ortholog); cone photoreceptor outer segment (ortholog); photoreceptor inner segment (ortholog) NW_004955469 10919776 10930392 - 102017114 AGCD01052552;GBBH01049667;XM_005400541 XP_005400598 MODEL 8799909 ncrna LOC102012792 uncharacterized LOC102012792 NW_004955514 558603 620325 + 102012792 AGCD01067014;AGCD01067015;AGCD01067016;GBDF01088853;XR_001231784;XR_264491 MODEL 39133373 snrna U4 U4 spliceosomal RNA 8963940 protein-coding LOC102005583 apolipoprotein L2-like NW_004955413 22371700 22393689 - 102005583 AGCD01014294;AGCD01014295;AGCD01014296;AGCD01014297;AGCD01014298;AGCD01014299;XM_005379646 XP_005379703 MODEL 8849411 protein-coding Tspan1 tetraspanin 1 INVOLVED IN protein stabilization (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2O (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955464 12089589 12095000 - 102024321 AGCD01050180;GBBH01003796;XM_005398688 XP_005398745 MODEL 8983275 pseudo LOC102021709 60S ribosomal protein L6-like NW_004955439 8223203 8224183 + 102021709 AGCD01035783 MODEL 8852633 ncrna LOC102010405 uncharacterized LOC102010405 NW_004955436 1481983 1512078 + 102010405 AGCD01033577;AGCD01033578;AGCD01033579;GBDF01153927;XR_001234957;XR_001234958;XR_001234959;XR_001234960;XR_001234961;XR_001234962;XR_001234963;XR_001234964 MODEL 8740170 protein-coding Rbbp4 RB binding protein 4, chromatin remodeling factor ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); histone binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); DNA replication-dependent chromatin assembly (ortholog); nucleosome assembly (ortholog); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; Hedgehog signaling pathway; ISWI family mediated chromatin remodeling pathway; FOUND IN ATPase complex (ortholog); CAF-1 complex (ortholog); chromatin (ortholog) NW_004955452 10955399 10975036 + 102025755 AGCD01044317;AGCD01044318;AGCD01044319;GBDF01043528;XM_005395079 XP_005395136 MODEL 8863514 protein-coding LOC102023422 olfactory receptor 7C1-like NW_004955626 22772 23710 + 102023422 AGCD01077461;XM_005415025 XP_005415082 MODEL 8730818 protein-coding LOC102011991 olfactory receptor 5V1-like NW_004955418 30227847 30228797 + 102011991 AGCD01019507;XM_005382370 XP_005382427 MODEL 8718522 ncrna LOC102012794 uncharacterized LOC102012794 NW_004955515 468692 476022 + 102012794 AGCD01067199;GBDF01281122;XR_264518 MODEL 8699537 protein-coding Entrep1 endosomal transmembrane epsin interactor 1 ENCODES a protein that exhibits ubiquitin ligase activator activity (ortholog); INVOLVED IN CXCL12-activated CXCR4 signaling pathway (ortholog); negative adaptation of signaling pathway (ortholog); receptor internalization (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN early endosome membrane (ortholog); late endosome membrane (ortholog); plasma membrane (ortholog) NW_004955434 3615284 3704014 - 102004633 AGCD01032137;AGCD01032138;AGCD01032139;AGCD01032140;AGCD01032141;GBBH01142742;GBCB01007711;XM_005388562 XP_005388619 MODEL 8959830 ncrna LOC102007041 uncharacterized LOC102007041 NW_004955429 13140112 13203078 + 102007041 AGCD01028736;AGCD01028737;GBDF01304725;XR_261328 MODEL 8896440 protein-coding Pdia4 protein disulfide isomerase family A member 4 ENCODES a protein that exhibits integrin binding (ortholog); protein disulfide isomerase activity (ortholog); protein-disulfide reductase activity (ortholog); INVOLVED IN blood coagulation, fibrin clot formation (ortholog); chaperone-mediated protein folding (ortholog); platelet aggregation (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; FOUND IN cell surface (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum chaperone complex (ortholog) NW_004955491 4344874 4360205 - 102010172 AGCD01060429;AGCD01060430;GBDJ01020910;XM_005404741 XP_005404798 MODEL 8931635 protein-coding Ptbp1 polypyrimidine tract binding protein 1 ENCODES a protein that exhibits mRNA binding (ortholog); pre-mRNA binding (ortholog); regulatory region RNA binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); cardiac ventricle development (ortholog); gene expression (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); cerebral creatine deficiency syndrome (ortholog); FOUND IN neuron projection terminus (ortholog); nucleus (ortholog) NW_004955495 6990565 7002492 - 102019185 AGCD01062109;AGCD01062110;GBBH01001751;XM_005406021;XM_005406023;XM_013505338;XM_013505339 XP_005406078;XP_005406080;XP_013360792;XP_013360793 MODEL 8762236 ncrna LOC102015722 uncharacterized LOC102015722 NW_004955418 3638310 3648153 - 102015722 AGCD01018796;AGCD01018797;GBDF01006642;XR_260539 MODEL 8807012 ncrna LOC102024470 uncharacterized LOC102024470 NW_004955421 22223831 22235690 + 102024470 AGCD01022128;GBCB01111021;XR_260814 MODEL 8814014 protein-coding Smim2 small integral membrane protein 2 NW_004955518 2093272 2093669 - 102027562 AGCD01067771;GBBH01127479;XM_013506951 XP_013362405 MODEL 8756777 ncrna LOC102008525 uncharacterized LOC102008525 NW_004955414 26180989 26187857 + 102008525 AGCD01015640;GBDF01208439;XR_260197 MODEL 8973144 protein-coding Pabpc1l poly(A) binding protein cytoplasmic 1 like INVOLVED IN chromatin remodeling (ortholog); cytosolic mRNA polyadenylation (ortholog); nucleus localization (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); Oocyte Maturation Defect 1 (ortholog) NW_004955445 12425738 12450830 - 102014093 AGCD01039751;GBDJ01299473;XM_005392456;XM_005392459;XM_005392460;XM_005392461;XM_013518323;XR_001235612 XP_005392513;XP_005392516;XP_005392517;XP_005392518;XP_013373777 MODEL 8860547 trna Trnag-ccc transfer RNA glycine (anticodon CCC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955442;NW_004955424 16570981;14887366 16571051;14887436 +;+ 101978846 AGCD01024664;AGCD01037901 MODEL 8965871 protein-coding Pxk PX domain containing serine/threonine kinase like INVOLVED IN inflammatory response (ortholog); modulation of chemical synaptic transmission (ortholog); negative regulation of ATP-dependent activity (ortholog); ASSOCIATED WITH Pyruvate Dehydrogenase E1-Beta Deficiency (ortholog); rheumatoid arthritis (ortholog); systemic lupus erythematosus (ortholog); FOUND IN centriolar satellite (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955430 1714208 1780674 - 102008133 AGCD01029132;AGCD01029133;GBCB01056666;XM_005387294;XM_005387295;XM_013515643;XM_013515644;XM_013515645;XM_013515646;XM_013515647;XM_013515648;XM_013515649 XP_005387351;XP_005387352;XP_013371097;XP_013371098;XP_013371099;XP_013371100;XP_013371101;XP_013371102;XP_013371103 MODEL 8771190 protein-coding Rad17 RAD17 checkpoint clamp loader component ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); INVOLVED IN DNA damage response (ortholog); mitotic intra-S DNA damage checkpoint signaling (ortholog); negative regulation of DNA replication (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN chromosome, telomeric region (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955575 78686 115072 + 102021496 AGCD01075201;AGCD01075202;GBDF01118718;XM_005413904;XM_005413905;XM_005413906;XM_013509598;XM_013509600 XP_005413961;XP_005413962;XP_005413963;XP_013365052;XP_013365054 MODEL 8706379 protein-coding Pnpt1 polyribonucleotide nucleotidyltransferase 1 ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); identical protein binding (ortholog); miRNA binding (ortholog); INVOLVED IN cellular response to interferon-beta (ortholog); cellular response to oxidative stress (ortholog); liver regeneration (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 70 (ortholog); combined oxidative phosphorylation deficiency 13 (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955424 27407451 27449830 + 102006366 AGCD01025116;AGCD01025117;GBBH01149997;XM_005385770;XM_013514724 XP_005385827;XP_013370178 MODEL 9000283 protein-coding Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); histone H3K9 methyltransferase activity (ortholog); INVOLVED IN bone development (ortholog); DNA methylation-dependent constitutive heterochromatin formation (ortholog); inner cell mass cell proliferation (ortholog); PARTICIPATES IN histone modification pathway; homocysteine metabolic pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); gastrointestinal stromal tumor (ortholog); high grade glioma (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955588 290497 338438 + 102017932 AGCD01076102;AGCD01076103;AGCD01076104;AGCD01076105;GBDF01085935;XM_005414466;XM_005414467;XM_005414468;XM_005414469;XM_013509910;XM_013509911 XP_005414523;XP_005414524;XP_005414525;XP_005414526;XP_013365364;XP_013365365 MODEL 8906784 protein-coding Srxn1 sulfiredoxin 1 ENCODES a protein that exhibits oxidoreductase activity, acting on a sulfur group of donors (ortholog); INVOLVED IN response to oxidative stress (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 1 (ortholog); Neurodevelopmental Disorders (ortholog); Polyglucosan Body Myopathy 1 with or without Immunodeficiency (ortholog); FOUND IN cytosol (ortholog) NW_004955597 483358 487555 - 102026821 AGCD01076557;GBCQ01038168;GBDI01255809;XM_013510033 XP_013365487 MODEL 8822692 protein-coding Rufy4 RUN and FYVE domain containing 4 ENCODES a protein that exhibits dynactin binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); cellular response to interleukin-4 (ortholog); multivesicular body-lysosome fusion (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN autophagosome (ortholog); endolysosome (ortholog) NW_004955453 15243125 15259086 - 102016885 AGCD01044890;GBCE01034218;XM_005395668;XM_013519836 XP_005395725;XP_013375290 MODEL 8734881 protein-coding Pik3ip1 phosphoinositide-3-kinase interacting protein 1 ENCODES a protein that exhibits phosphatidylinositol 3-kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH diastolic heart failure (ortholog) NW_004955455 5474569 5488420 - 102006211 AGCD01045727;AGCD01045728;AGCD01045729;GBBH01142408;GBDJ01181146;XM_013520330 XP_013375784 MODEL 8963946 ncrna LOC102005587 uncharacterized LOC102005587 NW_004955470 11311958 11314586 - 102005587 AGCD01052885;GBDF01111978;XR_263502 MODEL 150537121 snorna SNORD86 small nucleolar RNA, C/D box 86 8935000 protein-coding Rere arginine-glutamic acid dipeptide repeats ENCODES a protein that exhibits transcription coactivator activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN branching morphogenesis of a nerve (ortholog); cerebellar granule cell precursor proliferation (ortholog); cerebellar Purkinje cell layer maturation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Cerebral Visual Impairment and Intellectual Disability (ortholog); chromosome 1p36 deletion syndrome (ortholog); FOUND IN histone deacetylase complex (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955486 4303573 4695800 + 102026871 AGCD01059057;AGCD01059058;AGCD01059059;AGCD01059060;AGCD01059061;AGCD01059062;AGCD01059063;GBBH01091311;GBDF01085949;XM_013504212 XP_013359666 MODEL 9039003 ncrna LOC102011589 uncharacterized LOC102011589 NW_004955540 3450472 3456881 - 102011589 AGCD01071339;GBDF01209410;XR_001232117;XR_001232118;XR_264829 MODEL 8768515 protein-coding Ripk1 receptor interacting serine/threonine kinase 1 ENCODES a protein that exhibits death domain binding (ortholog); death receptor binding (ortholog); identical protein binding (ortholog); INVOLVED IN amyloid fibril formation (ortholog); apoptotic process (ortholog); canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN ceramide signaling pathway; FasL mediated signaling pathway; Toll-like receptor signaling pathway; ASSOCIATED WITH Autoinflammation with Episodic Fever and Lymphadenopathy (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN death-inducing signaling complex (ortholog); mitochondrion (ortholog); protein-containing complex (ortholog) NW_004955465 10127907 10167895 - 102016248 AGCD01050502;AGCD01050503;GBDJ01316825;XM_005398899;XM_005398900 XP_005398956;XP_005398957 MODEL 8836550 protein-coding Ppdpfl pancreatic progenitor cell differentiation and proliferation factor like NW_004955454 8902630 8907721 + 102025977 AGCD01045328;GBCB01001157;XM_005396047 XP_005396104 MODEL 39132887 snorna SNORD87 small nucleolar RNA, C/D box 87 8986699 protein-coding Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit ENCODES a protein that exhibits histone binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN DNA damage response (ortholog); response to estrogen (ortholog); transcription initiation-coupled chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN histone methyltransferase complex (ortholog); MLL1 complex (ortholog); MLL1/2 complex (ortholog) NW_004955406 40868290 40904343 - 102004894 AGCD01006667;GBDI01257066;XM_005375343;XM_005375344;XM_005375346;XM_013522894;XM_013522897 XP_005375400;XP_005375401;XP_005375403;XP_013378348;XP_013378351 MODEL 8708381 pseudo LOC102010762 RNA-binding protein 3 pseudogene NW_004955403 33567014 33567530 + 102010762 AGCD01002457 MODEL 8941820 ncrna LOC102019237 uncharacterized LOC102019237 NW_004955405 40081412 40101110 - 102019237 AGCD01005504;GBDF01173603;XR_259450 MODEL 9058595 protein-coding C1qb complement C1q B chain ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN complement activation, classical pathway (ortholog); inner ear development (ortholog); response to glucocorticoid (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); Alzheimer's disease (ortholog); C1q Deficiency (ortholog); FOUND IN complement component C1 complex (ortholog); complement component C1q complex (ortholog); extracellular region (ortholog) NW_004955452 2765844 2771695 + 102010120 AGCD01043903;GBCE01000145;XM_005394745;XM_013519694 XP_005394802;XP_013375148 MODEL 126903056 snorna SNORD88A small nucleolar RNA, C/D box 88A 8835678 protein-coding Tldc2 TBC/LysM-associated domain containing 2 INVOLVED IN negative regulation of cellular response to oxidative stress (ortholog); ASSOCIATED WITH Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 5 (ortholog); Chilblain Lupus 2 (ortholog) NW_004955422 24781476 24795112 - 102018842 AGCD01023235;AGCD01023236;GBBH01208237;XM_005384726;XM_013514016;XM_013514017;XM_013514018;XM_013514020 XP_005384783;XP_013369470;XP_013369471;XP_013369472;XP_013369474 MODEL 10134922 pseudo LOC106149906 tetratricopeptide repeat protein 19, mitochondrial-like NW_004955457 12061294 12065929 + 106149906 AGCD01046998 MODEL 8862196 protein-coding LOC102008527 olfactory receptor 52N4-like NW_004955414 21703835 21704818 + 102008527 AGCD01015429;XM_013511734 XP_013367188 MODEL 8845470 protein-coding Tspan10 tetraspanin 10 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN establishment of protein localization to organelle (ortholog); protein maturation (ortholog) NW_004955506 1442378 1448726 - 102003161 AGCD01065263;AGCD01065264;GBCE01121011;XM_005407269;XM_005407270 XP_005407326;XP_005407327 MODEL 8785989 protein-coding Pabpc4 poly(A) binding protein cytoplasmic 4 ENCODES a protein that exhibits mRNA binding (ortholog); poly(A) binding (ortholog); poly(C) RNA binding (ortholog); INVOLVED IN myeloid cell development (ortholog); regulation of mRNA stability (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); lung adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955452 17083679 17101436 - 102023324 AGCD01044542;AGCD01044543;GBCB01005127;GBDK01091488;XM_005395243;XM_005395245 XP_005395300;XP_005395302 MODEL 8829520 protein-coding Pgap6 post-GPI attachment to proteins 6 ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog) NW_004955442 16821275 16830275 + 102028905 AGCD01037917;GBCE01115676;GBDK01128164;XM_013517743 XP_013373197 MODEL 8874515 pseudo LOC102010411 WW domain-containing adapter protein with coiled-coil pseudogene NW_004955545 1844626 1846296 - 102010411 AGCD01071873 MODEL 8864885 ncrna LOC102011996 uncharacterized LOC102011996 NW_004955421 24720574 24725193 + 102011996 AGCD01022221;GBDI01347519;XR_260825 MODEL 8995749 protein-coding LOC102012796 vomeronasal type-2 receptor 116-like NW_004955524 3477585 3506250 - 102012796 AGCD01068903;AGCD01068904;AGCD01068905;GBDJ01017969;XM_013507196 XP_013362650 MODEL 8961488 ncrna LOC102018759 uncharacterized LOC102018759 NW_004955434 343225 349646 + 102018759 AGCD01032022;AGCD01032023;AGCD01032024;GBDK01384477;XR_261606 MODEL 8768922 protein-coding LOC102005588 olfactory receptor 51L1-like NW_004955414 21113707 21117034 - 102005588 AGCD01015407;XM_005380493 XP_005380550 MODEL 9061320 protein-coding Rundc1 RUN domain containing 1 INVOLVED IN in utero embryonic development (ortholog); ASSOCIATED WITH prostate cancer (ortholog) NW_004955451 16777348 16784876 + 102003510 AGCD01043706;AGCD01043707;GBCE01186563;GBDI01219560;XM_013519241 XP_013374695 MODEL 8866355 pseudo LOC102009680 60S ribosomal protein L13a pseudogene NW_004955452 571667 572274 - 102009680 AGCD01043817;AGCD01043818 MODEL 8939476 protein-coding Plcl1 phospholipase C like 1 (inactive) ENCODES a protein that exhibits GABA receptor binding (ortholog); INVOLVED IN gamma-aminobutyric acid signaling pathway (ortholog); negative regulation of cold-induced thermogenesis (ortholog); regulation of synaptic transmission, GABAergic (ortholog); ASSOCIATED WITH Experimental Liver Neoplasms (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955403 2643092 2904651 - 102011717 AGCD01001738;AGCD01001739;AGCD01001740;GBDI01356679;XM_005373259;XM_013511993;XM_013511996;XM_013512003;XM_013512012;XM_013512015;XM_013512018;XM_013512022 XP_005373316;XP_013367447;XP_013367450;XP_013367457;XP_013367466;XP_013367469;XP_013367472;XP_013367476 MODEL 9032099 protein-coding Ptbp2 polypyrimidine tract binding protein 2 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN cerebellum development (ortholog); mRNA splice site recognition (ortholog); negative regulation of RNA splicing (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN growth cone (ortholog); neuronal cell body (ortholog); spliceosomal complex (ortholog) NW_004955435 1703588 1773016 + 102027223 AGCD01032752;AGCD01032753;GBCB01041750;GBDF01051639;XM_005388785;XM_013516507;XM_013516508;XM_013516509 XP_005388842;XP_013371961;XP_013371962;XP_013371963 MODEL 8734597 protein-coding Slc2a2 solute carrier family 2 member 2 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); dehydroascorbic acid transmembrane transporter activity (ortholog); fructose transmembrane transporter activity (ortholog); INVOLVED IN carbohydrate utilization (ortholog); cellular response to fatty acid (ortholog); D-glucose transmembrane transport (ortholog); PARTICIPATES IN facilitative sugar transporter mediated glucose transport pathway; Fanconi syndrome pathway; forkhead class A signaling pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); diabetes mellitus (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border (ortholog) NW_004955420 1101769 1129672 - 102025012 AGCD01020568;XM_005382995 XP_005383052 MODEL 8992289 protein-coding Slc6a15 solute carrier family 6 member 15 ENCODES a protein that exhibits branched-chain amino acid:sodium symporter activity (ortholog); neutral L-amino acid:sodium symporter activity (ortholog); proline:sodium symporter activity (ortholog); INVOLVED IN L-leucine transport (ortholog); neutral amino acid transport (ortholog); proline transport (ortholog); FOUND IN membrane (ortholog) NW_004955405 22821931 22846420 - 102004034 AGCD01005106;GBDJ01388542;XM_013518066 XP_013373520 MODEL 9010276 pseudo LOC102008128 transcription initiation factor TFIID subunit 9-like NW_004955427 1717479 1718907 + 102008128 AGCD01026879 MODEL 8727457 protein-coding Ripk2 receptor interacting serine/threonine kinase 2 ENCODES a protein that exhibits CARD domain binding (ortholog); caspase binding (ortholog); identical protein binding (ortholog); INVOLVED IN adaptive immune response (ortholog); apoptotic process (ortholog); canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH leprosy (ortholog); ulcerative colitis (ortholog); FOUND IN cytoplasm (ortholog); cytoskeleton (ortholog); cytosol (ortholog) NW_004955417 6669675 6698142 + 102008942 AGCD01017988;GBCE01045721;GBDI01182180;XM_013512753 XP_013368207 MODEL 8796651 trna Trnag-gcc transfer RNA glycine (anticodon GCC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978844 AGCD01042230;AGCD01043711;AGCD01049456;AGCD01051475;AGCD01057629;AGCD01058153;AGCD01058182;AGCD01067339;AGCD01074351 MODEL 8814984 protein-coding Ppef1 protein phosphatase with EF-hand domain 1 ASSOCIATED WITH autistic disorder (ortholog); Coffin-Lowry syndrome (ortholog); developmental and epileptic encephalopathy 2 (ortholog) NW_004955586 597620 761433 - 102007831 AGCD01076035;AGCD01076036;AGCD01076037;AGCD01076038;AGCD01076039;AGCD01076040;AGCD01076041;AGCD01076042;AGCD01076043;AGCD01076044;GBDF01194348;XM_005414441;XM_013509899;XM_013509900;XM_013509901 XP_005414498;XP_013365353;XP_013365354;XP_013365355 MODEL 8708721 pseudo LOC102021711 disintegrin and metalloproteinase domain-containing protein 10 pseudogene NW_004955550 500606 504358 - 102021711 AGCD01072509 MODEL 151707880 snorna SNORD89 small nucleolar RNA, C/D box 89 8742332 pseudo LOC102017637 RNA-binding protein 39 pseudogene NW_004955409 3013441 3014560 + 102017637 AGCD01009233 MODEL 8839483 protein-coding Prps2 phosphoribosyl pyrophosphate synthetase 2 ENCODES a protein that exhibits ADP binding (ortholog); AMP binding (ortholog); ATP binding (ortholog); INVOLVED IN 5-phosphoribose 1-diphosphate biosynthetic process (ortholog); AMP biosynthetic process (ortholog); animal organ regeneration (ortholog); PARTICIPATES IN de novo purine biosynthetic pathway; ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); protein-containing complex (ortholog); ribose phosphate diphosphokinase complex (ortholog) NW_004955544 480587 512019 - 102030240 AGCD01071705;AGCD01071706;GBCE01044643;XM_005411376 XP_005411433 MODEL 8977474 protein-coding LOC102007042 olfactory receptor 5M9 NW_004955511 1599335 1600267 - 102007042 AGCD01066373;XM_005407967 XP_005408024 MODEL 8809700 protein-coding Tspan12 tetraspanin 12 ENCODES a protein that exhibits Wnt receptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); maintenance of blood-brain barrier (ortholog); Norrin signaling pathway (ortholog); ASSOCIATED WITH Disease Susceptibility (ortholog); early myoclonic encephalopathy (ortholog); exudative vitreoretinopathy (ortholog); FOUND IN plasma membrane (ortholog) NW_004955479 2570937 2636884 - 102005930 AGCD01056276;AGCD01056277;GBCB01074924;GBCE01134144;XM_013503288 XP_013358742 MODEL 8719921 ncrna LOC102012800 uncharacterized LOC102012800 NW_004955436 20441094 20445316 - 102012800 AGCD01034024;GBCB01036539;XR_261802 MODEL 8721089 ncrna LOC102010412 uncharacterized LOC102010412 NW_004955545 2843891 2852564 - 102010412 AGCD01071925;GBDI01188014;XR_264882 MODEL 39133375 snrna U4 U4 spliceosomal RNA 8752355 pseudo LOC102010765 protein FAM133B pseudogene NW_004955405 3393161 3394490 + 102010765 AGCD01004634 MODEL 8863133 protein-coding Rundc3a RUN domain containing 3A INVOLVED IN positive regulation of cGMP-mediated signaling (ortholog); ASSOCIATED WITH GRN-related frontotemporal lobar degeneration with TDP43 inclusions (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog) NW_004955451 17348822 17352271 + 102006736 AGCD01043743;GBDF01014728;GBDK01247607;XM_013519260 XP_013374714 MODEL 8786262 protein-coding LOC102011152 serine protease 29-like NW_004955442 15971410 15973505 + 102011152 AGCD01037889;XM_005391589 XP_005391646 MODEL 8860097 ncrna LOC102009682 uncharacterized LOC102009682 NW_004955453 7009688 7017214 + 102009682 AGCD01044736;XR_001236192 MODEL 8714822 protein-coding Pxmp2 peroxisomal membrane protein 2 FOUND IN cytoplasm (ortholog); peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955482 366613 373339 - 102019391 AGCD01057171;GBCB01058833;XM_005402949 XP_005403006 MODEL 9066218 pseudo LOC102010772 protein FRG1 pseudogene NW_004955407 27229926 27230701 - 102010772 AGCD01007548 MODEL 8754601 protein-coding Rad18 RAD18 E3 ubiquitin protein ligase ENCODES a protein that exhibits identical protein binding (ortholog); polyubiquitin modification-dependent protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN DNA damage response (ortholog); negative regulation of DNA recombination (ortholog); positive regulation of chromosome segregation (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); long QT syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); male germ cell nucleus (ortholog) NW_004955561 463586 602354 - 102027580 AGCD01073822;AGCD01073823;GBDK01117276;XM_013509104;XM_013509105;XM_013509106;XM_013509107;XM_013509108;XM_013509110 XP_013364558;XP_013364559;XP_013364560;XP_013364561;XP_013364562;XP_013364564 MODEL 8706043 protein-coding Ndufa3 NADH:ubiquinone oxidoreductase subunit A3 FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955604 139844 141578 - 102015682 AGCD01076865;GBCE01007106;XM_005414866 XP_005414923 MODEL 9013373 protein-coding Lingo3 leucine rich repeat and Ig domain containing 3 ASSOCIATED WITH myoepithelioma (ortholog); Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog) NW_004955495 5850956 5862249 + 102013518 AGCD01062036;AGCD01062037;AGCD01062038;GBCB01056095;GBCB01056097;XM_013505232 XP_013360686 MODEL 8971942 protein-coding Entrep2 endosomal transmembrane epsin interactor 2 ASSOCIATED WITH Angelman syndrome (ortholog); autistic disorder (ortholog); chromosome 15q11.2 deletion syndrome (ortholog) NW_004955416 29103925 29389149 + 102020337 AGCD01017645;AGCD01017646;AGCD01017647;AGCD01017648;AGCD01017649;AGCD01017650;AGCD01017651;AGCD01017652;AGCD01017653;AGCD01017654;AGCD01017655;GBDF01273920;XM_013512428 XP_013367882 MODEL 8898873 trna Trnag-ucc transfer RNA glycine (anticodon UCC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955568;NW_004955462;NW_004955467;NW_004955495 59658;14719232;8709239;4280962 59729;14719303;8709310;4281033 -;-;-;- 101978845 AGCD01049456;AGCD01051466;AGCD01061910;AGCD01074502 MODEL 8779963 pseudo LOC102011593 tripartite motif-containing protein 44 pseudogene NW_004955441 5319595 5320576 + 102011593 AGCD01036876 MODEL 9068109 protein-coding Pdia5 protein disulfide isomerase family A member 5 ENCODES a protein that exhibits protein disulfide isomerase activity (ortholog); protein-disulfide reductase activity (ortholog); INVOLVED IN protein folding (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); COVID-19 (ortholog); familial hypocalciuric hypercalcemia (ortholog) NW_004955427 22268730 22356123 + 102013954 AGCD01027465;GBDF01014374;XM_005386524 XP_005386581 MODEL 8848104 protein-coding Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 ENCODES a protein that exhibits 4-alpha-hydroxytetrahydrobiopterin dehydratase activity (ortholog); identical protein binding (ortholog); phenylalanine 4-monooxygenase activity (ortholog); INVOLVED IN L-phenylalanine metabolic process (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); BH4-deficient hyperphenylalaninemia D (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955437 20482589 20487337 + 102008983 AGCD01034874;GBCE01054967;XM_005390042 XP_005390099 MODEL 9014092 pseudo LOC102024471 10 kDa heat shock protein, mitochondrial-like NW_004955421 4215206 4215943 + 102024471 AGCD01021685 MODEL 9016569 protein-coding Pgbd1 piggyBac transposable element derived 1 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH megacolon (ortholog); schizophrenia (ortholog) NW_004955465 13641462 13656466 + 102012077 AGCD01050614;AGCD01050615;GBCE01032028;XM_005398967;XM_005398968;XM_013521783 XP_005399024;XP_005399025;XP_013377237 MODEL 8791634 protein-coding Trank1 tetratricopeptide repeat and ankyrin repeat containing 1 ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); bipolar disorder (ortholog) NW_004955421 3707510 3852886 - 102029868 AGCD01021665;AGCD01021666;AGCD01021667;AGCD01021668;AGCD01021669;AGCD01021670;AGCD01021671;GBDK01237538;XM_005383682;XM_013513764;XM_013513765;XM_013513766 XP_005383739;XP_013369218;XP_013369219;XP_013369220 MODEL 9036369 protein-coding Sord sorbitol dehydrogenase ENCODES a protein that exhibits D-sorbitol dehydrogenase (acceptor) activity (ortholog); D-xylulose reductase activity (ortholog); identical protein binding (ortholog); INVOLVED IN D-glucuronate catabolic process to D-xylulose 5-phosphate (ortholog); flagellated sperm motility (ortholog); fructose biosynthetic process (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; ASSOCIATED WITH AGAT deficiency (ortholog); autosomal recessive distal hereditary motor neuronopathy 8 (ortholog); Bloom syndrome (ortholog); FOUND IN cytosol (ortholog); extracellular exosome (ortholog); membrane (ortholog) NW_004955409 8305819 8333733 - 102024653 AGCD01009393;AGCD01009394;GBCQ01010097;XM_005376745;XM_013510316 XP_005376802;XP_013365770 MODEL 8716371 ncrna LOC102019238 uncharacterized LOC102019238 NW_004955453 3959312 3961658 - 102019238 AGCD01044670;GBDJ01054424;XR_262710 MODEL 39132081 snorna SNORA72 Small nucleolar RNA SNORA72 8869926 pseudo LOC102023429 Golgi-associated plant pathogenesis-related protein 1 pseudogene NW_004955405 17787571 17788068 + 102023429 AGCD01005008;XM_005374687 MODEL 8847762 protein-coding Wdr93 WD repeat domain 93 ASSOCIATED WITH autism spectrum disorder (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955416 15472866 15527853 - 102026636 AGCD01017332;AGCD01017333;AGCD01017334;AGCD01017335;GBDF01045871;XM_005381546;XM_005381547;XM_013512549;XM_013512550 XP_005381603;XP_005381604;XP_013368003;XP_013368004 MODEL 8788695 protein-coding Slc2a4 solute carrier family 2 member 4 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); D-glucose uniporter activity (ortholog); INVOLVED IN amylopectin biosynthetic process (ortholog); brown fat cell differentiation (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN facilitative sugar transporter mediated glucose transport pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Cardiomegaly (ortholog); common variable immunodeficiency (ortholog); FOUND IN cell surface (ortholog); clathrin-coated pit (ortholog); clathrin-coated vesicle (ortholog) NW_004955467 9630304 9636005 - 102022580 AGCD01051520;GBCB01005958;XM_005399526 XP_005399583 MODEL 39133377 snrna U4 U4 spliceosomal RNA 8818566 pseudo LOC102008528 density-regulated protein pseudogene NW_004955415 15527746 15528569 + 102008528 AGCD01016348 MODEL 8932753 protein-coding Ss18 SS18 subunit of BAF chromatin remodeling complex ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN cell morphogenesis (ortholog); cytoskeleton organization (ortholog); ephrin receptor signaling pathway (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); synovial sarcoma (ortholog); FOUND IN microtubule cytoskeleton (ortholog); npBAF complex (ortholog); SWI/SNF complex (ortholog) NW_004955402 14140261 14210467 - 102012593 AGCD01000420;AGCD01000421;GBCB01109031;XM_005372726;XM_005372727;XM_005372728 XP_005372783;XP_005372784;XP_005372785 MODEL 9014683 protein-coding Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-3-kinase regulator activity (ortholog); ATPase binding (ortholog); INVOLVED IN B cell differentiation (ortholog); cellular response to fatty acid (ortholog); cellular response to insulin stimulus (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH agammaglobulinemia 7 (ortholog); Alzheimer's disease (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN cell-cell junction (ortholog); cis-Golgi network (ortholog); cytoplasm (ortholog) NW_004955446 1020707 1098327 - 102010955 AGCD01039951;AGCD01039952;GBDK01077429;XM_005392596;XM_005392597 XP_005392653;XP_005392654 MODEL 150537135 snorna SNORD9 small nucleolar RNA, C/D box 9 8903401 protein-coding Tle1 TLE family member 1, transcriptional corepressor ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of anoikis (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN beta-catenin-TCF complex (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955530 1936936 2028803 + 102008658 AGCD01069903;AGCD01069904;GBBH01187430;GBCB01002607;XM_005410111;XM_005410112;XM_005410113;XM_005410114;XM_013507549 XP_005410168;XP_005410169;XP_005410170;XP_005410171;XP_013363003 MODEL 8969105 protein-coding Pabpc4l poly(A) binding protein cytoplasmic 4 like NW_004955428 8613395 8616432 + 102025930 AGCD01027804;GBCQ01141470;XM_005386713 XP_005386770 MODEL 8964917 pseudo LOC102011998 derlin-1 pseudogene NW_004955422 13345152 13349677 + 102011998 AGCD01022821 MODEL 8859584 ncrna LOC102017639 uncharacterized LOC102017639 NW_004955410 16877529 16903847 - 102017639 AGCD01010974;GBDF01000533;XR_001232696;XR_259842 MODEL 8899858 pseudo LOC102006665 10 kDa heat shock protein, mitochondrial pseudogene NW_004955482 8898964 8899780 - 102006665 AGCD01057555 MODEL 9003756 protein-coding Ndufa4 NDUFA4 mitochondrial complex associated ENCODES a protein that exhibits protein-containing complex binding (ortholog); ASSOCIATED WITH mitochondrial complex IV deficiency nuclear type 21 (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955432 17502272 17509517 - 102004105 AGCD01031126;GBDF01003997;XM_005388104 XP_005388161 MODEL 9067827 protein-coding Prpsap1 phosphoribosyl pyrophosphate synthetase associated protein 1 ENCODES a protein that exhibits enzyme regulator activity (ortholog); identical protein binding (ortholog); kinase binding (ortholog); INVOLVED IN negative regulation of kinase activity (ortholog); FOUND IN protein-containing complex (ortholog); ribose phosphate diphosphokinase complex (ortholog) NW_004955506 5951210 5987658 + 102026134 AGCD01065394;AGCD01065395;AGCD01065396;GBDF01001593;XM_005407435 XP_005407492 MODEL 15036843 trna Trnah-aug transfer RNA histidine(anticodon AUG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978820 8960805 protein-coding Smim20 small integral membrane protein 20 INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955443 19242776 19254002 - 102018661 AGCD01038622;GBDJ01132507;XM_005392031 XP_005392088 MODEL 8757838 protein-coding Rbbp6 RB binding protein 6, ubiquitin ligase ENCODES a protein that exhibits protein kinase binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN DNA damage response (ortholog); embryonic organ development (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); FOUND IN centrosome (ortholog); nuclear speck (ortholog); protein-containing complex (ortholog) NW_004955493 3003522 3034638 + 102025257 AGCD01060977;AGCD01060978;GBBH01164809;GBDI01083427;XM_005405106 XP_005405163 MODEL 8883847 protein-coding Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 ENCODES a protein that exhibits phosphatidylinositol 3-kinase regulatory subunit binding (ortholog); phosphotyrosine residue binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); insulin receptor signaling pathway (ortholog); intracellular glucose homeostasis (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; FasL mediated signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH colon cancer (ortholog); Colonic Neoplasms (ortholog); Developmental Disabilities (ortholog); FOUND IN focal adhesion (ortholog); nucleus (ortholog); phosphatidylinositol 3-kinase complex, class IA (ortholog) NW_004955524 3234111 3241445 - 102011143 AGCD01068870;AGCD01068871;GBCE01137903;GBDF01123732;XM_013507263 XP_013362717 MODEL 8980186 protein-coding Pdia6 protein disulfide isomerase family A member 6 ENCODES a protein that exhibits protein-disulfide reductase activity (ortholog); INVOLVED IN IRE1-mediated unfolded protein response (ortholog); negative regulation of IRE1-mediated unfolded protein response (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; FOUND IN centriolar satellite (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955487 5735698 5744601 - 102019178 AGCD01059345;GBBH01003820;GBCE01003954;XM_013504373 XP_013359827 MODEL 8965988 ncrna LOC102010413 uncharacterized LOC102010413 NW_004955440 18515406 18523978 + 102010413 AGCD01036611;AGCD01036612;GBDI01160681;XR_262044 MODEL 8991425 protein-coding Ptbp3 polypyrimidine tract binding protein 3 INVOLVED IN negative regulation of mRNA splicing, via spliceosome (ortholog); negative regulation of RNA splicing (ortholog); regulation of cell differentiation (ortholog) NW_004955419 15002780 15101588 + 102005474 AGCD01020055;AGCD01020056;AGCD01020057;GBDF01088480;GBDF01088481;XM_013513256;XM_013513257;XM_013513258;XM_013513259 XP_013368710;XP_013368711;XP_013368712;XP_013368713 MODEL 9059246 pseudo LOC102008130 40S ribosomal protein S15a pseudogene NW_004955428 3708701 3774517 + 102008130 AGCD01027660;AGCD01027661 MODEL 10236746 protein-coding LOC106149907 translation initiation factor IF-2-like NW_004955457 7490189 7514301 - 106149907 AGCD01046883;GBCQ01126269;GBDK01124100;XM_013520660 XP_013376114 MODEL 10305017 ncrna LOC106147073 uncharacterized LOC106147073 NW_004955515 2397994 2408255 - 106147073 AGCD01067249;GBCB01083854;XR_001231792 MODEL 8975019 protein-coding Setdb2 SET domain bifurcated histone lysine methyltransferase 2 ENCODES a protein that exhibits histone H3K9 methyltransferase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); mitotic cell cycle (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955431 2899849 2943091 + 102024712 AGCD01029942;GBCC01045530;XM_005387590;XM_005387591;XM_005387592;XM_013515747;XM_013515748 XP_005387647;XP_005387648;XP_005387649;XP_013371201;XP_013371202 MODEL 8979505 pseudo LOC102021719 60S ribosomal protein L26-like NW_004955448 10606482 10609803 - 102021719 AGCD01041495 MODEL 9055110 pseudo LOC102015725 E3 ubiquitin-protein ligase RNF130 pseudogene NW_004955419 5457561 5458697 - 102015725 AGCD01019810 MODEL 8828809 protein-coding Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 INVOLVED IN autophagosome maturation (ortholog); cellular response to glucose starvation (ortholog); early endosome to late endosome transport (ortholog); PARTICIPATES IN autophagy pathway; inositol metabolic pathway; phosphoinositide metabolic pathway; ASSOCIATED WITH alkaptonuria (ortholog); immunodeficiency 21 (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN axoneme (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955501 7604934 7681947 + 102013949 AGCD01064219;AGCD01064220;AGCD01064221;GBDI01138465;XM_005406858;XM_005406859;XM_005406860 XP_005406915;XP_005406916;XP_005406917 MODEL 8738475 protein-coding LOC102010775 olfactory receptor 1468-like NW_004955408 1596483 1597001 + 102010775 AGCD01007966;GBDF01134956;XM_005376562 XP_005376619 MODEL 8785200 protein-coding LOC102018763 uncharacterized LOC102018763 NW_004955527 8085 9252 + 102018763 AGCD01069371;GBDF01002839;XM_013507372 XP_013362826 MODEL 8870419 ncrna LOC102011598 uncharacterized LOC102011598 NW_004955567 1211454 1212041 + 102011598 AGCD01074462;GBDF01038351;XR_265029 MODEL 8893588 protein-coding LOC102007043 olfactory receptor 5W2-like NW_004955511 691641 692573 - 102007043 AGCD01066337;XM_005408207 XP_005408264 MODEL 8707944 protein-coding Lingo4 leucine rich repeat and Ig domain containing 4 INVOLVED IN positive regulation of synapse assembly (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog) NW_004955589 618959 623915 + 102013567 AGCD01076179;GBDF01150351;XM_005414547 XP_005414604 MODEL 9038598 protein-coding Pabpc5 poly(A) binding protein cytoplasmic 5 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); developmental and epileptic encephalopathy 9 (ortholog); FOUND IN cytosol (ortholog); mitochondrial matrix (ortholog) NW_004955525 2847458 2849836 - 102022323 AGCD01069107;XM_005409738 XP_005409795 MODEL 8878256 protein-coding Slc6a16 solute carrier family 6 member 16 ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog) NW_004955559 1493030 1509213 + 102021607 AGCD01073647;GBDF01044814;XM_013508998 XP_013364452 MODEL 8819306 protein-coding Pnrc1 proline rich nuclear receptor coactivator 1 ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog) NW_004955411 15837491 15841277 + 102004363 AGCD01011952;AGCD01011953;GBDF01303221;GBDJ01006301;XM_013510921 XP_013366375 MODEL 8829580 trna Trnah-gug transfer RNA histidine(anticodon GUG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955568;NW_004955409;NW_004955434;NW_004955409;NW_004955409 58646;8201309;17523204;8203034;8201874 58717;8201380;17523275;8203105;8201945 -;-;-;+;+ 101978821 AGCD01009385;AGCD01032537;AGCD01074502 MODEL 8838137 ncrna LOC102011155 uncharacterized LOC102011155 NW_004955446 10576607 10593188 + 102011155 AGCD01040183;GBDF01235922;XR_262391 MODEL 9015116 protein-coding Rbbp7 RB binding protein 7, chromatin remodeling factor ENCODES a protein that exhibits histone binding (ortholog); RNA binding (ortholog); INVOLVED IN cellular heat acclimation (ortholog); chromatin remodeling (ortholog); negative regulation of cell growth (ortholog); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; Hedgehog signaling pathway; ISWI family mediated chromatin remodeling pathway; ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN ATPase complex (ortholog); chromosome, telomeric region (ortholog); cytosol (ortholog) NW_004955519 1460199 1482699 + 102006943 AGCD01067893;GBDF01080619;XM_005409144 XP_005409201 MODEL 8889750 protein-coding LOC102010423 olfactory receptor 7G2-like NW_004955563 285695 286633 - 102010423 AGCD01074059;XM_013509134 XP_013364588 MODEL 39133378 snrna U4 U4 spliceosomal RNA 8880990 protein-coding Rad21 RAD21 cohesin complex component ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor binding (ortholog); lncRNA binding (ortholog); INVOLVED IN chromatin looping (ortholog); negative regulation of G2/M transition of mitotic cell cycle (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH Cerebral Hemorrhage (ortholog); colorectal carcinoma (ortholog); Cornelia de Lange syndrome (ortholog); FOUND IN chromatin (ortholog); chromosome, centromeric region (ortholog); cohesin complex (ortholog) NW_004955417 22941549 22966395 - 102030307 AGCD01018425;AGCD01018426;GBBH01088042;XM_005381898 XP_005381955 MODEL 8721704 ncrna LOC102005589 uncharacterized LOC102005589 NW_004955415 23433810 23434272 + 102005589 AGCD01016554;GBDF01207363;XR_260313 MODEL 8805325 protein-coding Wdr97 WD repeat domain 97 ASSOCIATED WITH Recombinant Chromosome 8 Syndrome (ortholog) NW_004955454 2769356 2778024 + 102023430 AGCD01045033;GBCB01051894;XM_005395848;XM_013520172;XM_013520173;XM_013520174;XM_013520175;XR_001236234 XP_005395905;XP_013375626;XP_013375627;XP_013375628;XP_013375629 MODEL 8742476 protein-coding Tspan13 tetraspanin 13 ENCODES a protein that exhibits calcium channel regulator activity (ortholog); INVOLVED IN regulation of calcium ion transmembrane transport (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955410 19971216 19979923 + 102021637 AGCD01011039;GBBH01095569;XM_013510494 XP_013365948 MODEL 8790185 protein-coding Entrep3 endosomal transmembrane epsin interactor 3 ENCODES a protein that exhibits WW domain binding (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog) NW_004955545 1703860 1710120 - 102023398 AGCD01071868;AGCD01071869;GBBH01067051;GBDK01395802;XM_013508339;XM_013508340 XP_013363793;XP_013363794 MODEL 8837515 ncrna LOC102012801 uncharacterized LOC102012801 NW_004955437 8031121 8040440 - 102012801 AGCD01034477;GBDF01226069;XR_261867 MODEL 8702923 protein-coding Ss18l1 SS18L1 subunit of BAF chromatin remodeling complex INVOLVED IN dendrite development (ortholog); positive regulation of dendrite morphogenesis (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); FOUND IN condensed chromosome, centromeric region (ortholog); cytosol (ortholog); kinetochore (ortholog) NW_004955528 1849457 1881138 - 102004749 AGCD01069574;GBCB01004872;XM_005410035;XM_005410036;XM_005410037;XM_013507508;XM_013507509;XM_013507510;XR_264698 XP_005410092;XP_005410093;XP_005410094;XP_013362962;XP_013362963;XP_013362964 MODEL 8870338 pseudo LOC102010777 cyclin-dependent kinase 4 pseudogene NW_004955458 15031076 15032155 + 102010777 AGCD01047860 MODEL 8886605 ncrna LOC102018765 uncharacterized LOC102018765 NW_004955533 928041 929816 - 102018765 AGCD01070335;GBCB01020311;XR_264741 MODEL 8908983 protein-coding Pik3r5 phosphoinositide-3-kinase regulatory subunit 5 ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase regulator activity (ortholog); G-protein beta/gamma-subunit complex binding (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); phosphatidylinositol metabolic process (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH ataxia with oculomotor apraxia type 3 (ortholog); colon cancer (ortholog); spastic ataxia (ortholog); FOUND IN centriolar satellite (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955467 8025231 8091406 + 102011751 AGCD01051442;AGCD01051443;AGCD01051444;GBCE01163276;XM_005399388;XM_013522206;XM_013522207;XM_013522208;XM_013522209 XP_005399445;XP_013377660;XP_013377661;XP_013377662;XP_013377663 MODEL 9048252 protein-coding C1qbp complement C1q binding protein ENCODES a protein that exhibits adrenergic receptor binding (ortholog); C5-methylcytidine-containing RNA reader activity (ortholog); complement component C1q complex binding (ortholog); INVOLVED IN cytosolic ribosome assembly (ortholog); mitochondrial RNA catabolic process (ortholog); negative regulation of defense response to virus (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); combined oxidative phosphorylation deficiency 33 (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955467 10788142 10792272 - 102027161 AGCD01051583;GBDJ01090000;GBDK01129135;XM_013522096 XP_013377550 MODEL 8890062 protein-coding Ndufa4l2 NDUFA4 mitochondrial complex associated like 2 ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); familial melanoma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955458 4962868 4965838 - 102021854 AGCD01047446;GBDF01052187;XM_005397349 XP_005397406 MODEL 39132084 snorna SNORA72 Small nucleolar RNA SNORA72 8760632 protein-coding LOC102019240 quinone oxidoreductase-like protein 2 NW_004955406 17523170 17559805 - 102019240 AGCD01006011;AGCD01006012;GBCQ01041000;XM_005374910;XM_013521021 XP_005374967;XP_013376475 MODEL 8968508 protein-coding Ss18l2 SS18 like 2 ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog) NW_004955420 28203226 28205284 - 102027534 AGCD01021472;GBCE01117079;XM_005383539 XP_005383596 MODEL 10121481 protein-coding LOC106149908 translation initiation factor IF-2-like NW_004955457 7661508 7684550 + 106149908 AGCD01046885;GBDF01185661;XM_013520661 XP_013376115 MODEL 8836287 protein-coding Pdik1l PDLIM1 interacting kinase 1 like ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); retinitis pigmentosa 59 (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955452 5571433 5577801 + 102012919 AGCD01044043;GBDF01280653;GBDI01279074;XM_005394842 XP_005394899 MODEL 9064245 protein-coding Slc2a4rg SLC2A4 regulator ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); INVOLVED IN regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN nuclear speck (ortholog) NW_004955528 485653 488923 - 102004849 AGCD01069535;GBDJ01087928;GBDJ01087930;XM_005409944 XP_005410001 MODEL 9006063 protein-coding Ptcd2 pentatricopeptide repeat domain 2 INVOLVED IN heart development (ortholog); kidney development (ortholog); liver development (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrion (ortholog) NW_004955575 1126978 1156727 + 102004763 AGCD01075233;GBDJ01350323;XM_005413937;XM_005413938;XM_013509609 XP_005413994;XP_005413995;XP_013365063 MODEL 8790886 protein-coding Setx senataxin ENCODES a protein that exhibits identical protein binding (ortholog); transcription termination site sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); cellular response to oxidative stress (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); amyotrophic lateral sclerosis type 4 (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); growth cone (ortholog) NW_004955513 1718432 1776133 - 102026139 AGCD01066862;GBDK01147152;GBDK01147154;XM_005408377 XP_005408434 MODEL 8900587 protein-coding LOC102008531 BRCA1-A complex subunit RAP80-like NW_004955417 1529837 1666641 - 102008531 AGCD01017837;AGCD01017838;AGCD01017839;AGCD01017840;AGCD01017841;AGCD01017842;AGCD01017843;AGCD01017844;XM_013512696 XP_013368150 MODEL 9022593 protein-coding Plcl2 phospholipase C like 2 ENCODES a protein that exhibits GABA receptor binding (ortholog); INVOLVED IN B cell proliferation involved in immune response (ortholog); B-1a B cell differentiation (ortholog); gamma-aminobutyric acid signaling pathway (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); schizophrenia (ortholog) NW_004955430 9157074 9347366 + 102028997 AGCD01029407;AGCD01029408;AGCD01029409;GBCE01152675;GBDJ01186898;XM_005387455 XP_005387512 MODEL 9012517 ncrna LOC102012000 uncharacterized LOC102012000 NW_004955423 27287604 27301513 + 102012000 AGCD01024120;AGCD01024121;GBCE01127032;XR_001234059 MODEL 8880910 protein-coding Pcbd2 pterin-4 alpha-carbinolamine dehydratase 2 ENCODES a protein that exhibits identical protein binding (ortholog); phenylalanine 4-monooxygenase activity (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrion (ortholog); nucleus (ortholog) NW_004955408 30090808 30137894 + 102028938 AGCD01008796;AGCD01008797;AGCD01008798;GBCE01097464;GBCQ01095927;XM_013506992;XM_013506994 XP_013362446;XP_013362448 MODEL 8728764 pseudo LOC102006671 nuclear FMR1 interacting protein 2-like NW_004955491 8637891 8639987 - 102006671 AGCD01060619 MODEL 8727158 protein-coding Ripk3 receptor interacting serine/threonine kinase 3 ENCODES a protein that exhibits identical protein binding (ortholog); protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); amyloid fibril formation (ortholog); cellular response to hydrogen peroxide (ortholog); ASSOCIATED WITH Acute-On-Chronic Liver Failure (ortholog); adult respiratory distress syndrome (ortholog); avian influenza (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955409 35961604 35965477 + 102028620 AGCD01010437;GBDF01271691;XM_005377007;XM_005377010;XM_013510393;XM_013510394;XM_013510395;XM_013510396 XP_005377064;XP_005377067;XP_013365847;XP_013365848;XP_013365849;XP_013365850 MODEL 8809835 ncrna LOC102011599 uncharacterized LOC102011599 NW_004955448 16625313 16631092 + 102011599 AGCD01041700;GBDF01305679;XR_001235757;XR_262473 MODEL 8981356 protein-coding Ppef2 protein phosphatase with EF-hand domain 2 ENCODES a protein that exhibits Hsp70 protein binding (ortholog); Hsp90 protein binding (ortholog); mitogen-activated protein kinase kinase kinase binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); negative regulation of apoptotic signaling pathway (ortholog); negative regulation of MAPK cascade (ortholog); ASSOCIATED WITH progressive myoclonus epilepsy (ortholog) NW_004955474 1758988 1770427 + 102028528 AGCD01054267;AGCD01054268;GBDF01228178;XM_013523094 XP_013378548 MODEL 8791335 protein-coding Trap1 TNF receptor associated protein 1 ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN negative regulation of cellular respiration (ortholog); negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide (ortholog); translational attenuation (ortholog); ASSOCIATED WITH breast carcinoma (ortholog); CAKUT (ortholog); CAKUT1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial matrix (ortholog) NW_004955442 13697471 13733161 + 102019206 AGCD01037786;GBDF01051870;XM_005391321;XM_005391323;XM_013517803 XP_005391378;XP_005391380;XP_013373257 MODEL 8795535 pseudo LOC102010778 60S ribosomal protein L12-like NW_004955459 3652052 3652565 + 102010778 AGCD01048015 MODEL 9066467 protein-coding Rerg RAS like estrogen regulated growth inhibitor ENCODES a protein that exhibits GTPase activity (ortholog); INVOLVED IN negative regulation of cell growth (ortholog); negative regulation of cell population proliferation (ortholog); response to hormone (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); breast cancer (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955413 11825235 11940390 - 102004687 AGCD01013973;AGCD01013974;AGCD01013975;AGCD01013976;GBCQ01095141;XM_005379016;XM_013511678 XP_005379073;XP_013367132 MODEL 8843225 protein-coding Sorl1 sortilin related receptor 1 ENCODES a protein that exhibits amyloid-beta binding (ortholog); aspartic-type endopeptidase inhibitor activity (ortholog); low-density lipoprotein particle binding (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); cell migration (ortholog); diet induced thermogenesis (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Alzheimer's disease 9 (ortholog); atrial fibrillation (ortholog); FOUND IN cell surface (ortholog); early endosome (ortholog); early endosome membrane (ortholog) NW_004955412 22421984 22576179 + 102015704 AGCD01013047;AGCD01013048;AGCD01013049;AGCD01013050;AGCD01013051;AGCD01013052;GBBH01091931;XM_005378364 XP_005378421 MODEL 8723359 pseudo LOC102011156 glutathione S-transferase alpha-3 pseudogene NW_004955446 4760282 4767429 + 102011156 AGCD01040045 MODEL 8781360 ncrna LOC102011604 uncharacterized LOC102011604 NW_004955592 442424 444289 + 102011604 AGCD01076315;GBDF01289807;XR_265137 MODEL 8950390 protein-coding Pnrc2 proline rich nuclear receptor coactivator 2 INVOLVED IN nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN Golgi apparatus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955452 3826337 3829896 + 102024081 AGCD01043949;GBCQ01004889;XM_005394788 XP_005394845 MODEL 8758135 protein-coding C1qc complement C1q C chain INVOLVED IN complement activation, classical pathway (ortholog); negative regulation of granulocyte differentiation (ortholog); negative regulation of macrophage differentiation (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); C1q Deficiency (ortholog); C1q Deficiency 3 (ortholog); FOUND IN complement component C1q complex (ortholog); extracellular region (ortholog); extrinsic component of postsynaptic membrane (ortholog) NW_004955452 2759079 2762522 + 102009794 AGCD01043903;GBDI01004925;XM_005394744 XP_005394801 MODEL 8978668 protein-coding Slc6a17 solute carrier family 6 member 17 INVOLVED IN alanine transport (ortholog); brain development (ortholog); glycine transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive intellectual developmental disorder 48 (ortholog); developmental and epileptic encephalopathy 32 (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); synapse (ortholog) NW_004955435 13668690 13717401 + 102015885 AGCD01033208;AGCD01033209;AGCD01033210;GBCQ01085126;XM_005388913;XM_013516399 XP_005388970;XP_013371853 MODEL 8840654 pseudo LOC102008132 40S ribosomal protein S15 pseudogene NW_004955429 10102174 10102807 + 102008132 AGCD01028666 MODEL 8795351 protein-coding LOC102003778 cationic trypsin-3-like NW_004955494 1217574 1223680 + 102003778 AGCD01061392;XM_013504918 XP_013360372 MODEL 8916944 pseudo LOC102021720 thioredoxin-like NW_004955449 3639955 3645607 - 102021720 AGCD01041858 MODEL 8741319 protein-coding Rbbp8 RB binding protein 8, endonuclease ENCODES a protein that exhibits damaged DNA binding (ortholog); identical protein binding (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); DNA double-strand break processing involved in repair via single-strand annealing (ortholog); DNA strand resection involved in replication fork processing (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; homologous recombination pathway of double-strand break repair; non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN BRCA1-C complex (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955402 11245857 11331872 + 102030137 AGCD01000298;AGCD01000299;GBDK01233448;XM_005372692;XM_005372693;XM_005372694;XM_013503320 XP_005372749;XP_005372750;XP_005372751;XP_013358774 MODEL 8811883 ncrna LOC102005590 uncharacterized LOC102005590 NW_004955479 2051181 2061238 - 102005590 AGCD01056261;GBDF01038985;XR_001230885;XR_001230886 MODEL 8826739 ncrna LOC102019243 uncharacterized LOC102019243 NW_004955406 11927100 11938294 + 102019243 AGCD01005898;XR_001236357 MODEL 9014031 ncrna LOC102017640 uncharacterized LOC102017640 NW_004955463 4830363 4852657 + 102017640 AGCD01049617;AGCD01049618;AGCD01049619;XR_263145;XR_263146 MODEL 8710498 pseudo LOC102007044 nucleolar GTP-binding protein 2 pseudogene NW_004955430 12703634 12705804 - 102007044 AGCD01029509 MODEL 8959951 protein-coding Rad21l1 RAD21 cohesin complex component like 1 INVOLVED IN double-strand break repair (ortholog); double-strand break repair via homologous recombination (ortholog); fertilization (ortholog); ASSOCIATED WITH spermatogenic failure 3 (ortholog); FOUND IN chromosome (ortholog); condensed nuclear chromosome (ortholog); lateral element (ortholog) NW_004955596 455932 485853 + 102012386 AGCD01076519;GBDF01039792;XM_005414695;XM_005414696;XM_013510007 XP_005414752;XP_005414753;XP_013365461 MODEL 8793979 pseudo LOC102009690 olfactory receptor 1361-like NW_004955408 1614860 1615787 + 102009690 AGCD01007967 MODEL 8960145 protein-coding Pgbd2 piggyBac transposable element derived 2 ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog) NW_004955418 29951478 29985800 + 102019699 AGCD01019492;AGCD01019493;AGCD01019494;AGCD01019495;AGCD01019496;GBDF01256923;XM_005382331;XM_005382332;XM_013513077 XP_005382388;XP_005382389;XP_013368531 MODEL 8859914 protein-coding Smim22 small integral membrane protein 22 INVOLVED IN lipid droplet formation (ortholog); positive regulation of cell migration (ortholog); regulation of actin cytoskeleton organization (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); Kohlschutter-Tonz syndrome (ortholog) NW_004955442 12700461 12701283 - 102004013 AGCD01037745;GBDI01078262;XM_005391268;XM_005391269 XP_005391325;XP_005391326 MODEL 8817598 protein-coding Pxmp4 peroxisomal membrane protein 4 INVOLVED IN ether lipid metabolic process (ortholog); ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955422 27602348 27617901 + 102026880 AGCD01023328;AGCD01023329;GBDK01282137;XM_005384839 XP_005384896 MODEL 8888339 protein-coding Pabpn1 poly(A) binding protein nuclear 1 ENCODES a protein that exhibits RNA polymerase binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); MAPK cascade (ortholog); poly(A)+ mRNA export from nucleus (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); lysinuric protein intolerance (ortholog); FOUND IN nuclear inclusion body (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955409 37000423 37004823 - 102020094 AGCD01010486;AGCD01010487;GBBH01031166;GBCE01028701;XM_013510436 XP_013365890 MODEL 8727981 protein-coding Tspan14 tetraspanin 14 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN positive regulation of Notch signaling pathway (ortholog); protein localization to plasma membrane (ortholog); protein maturation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog); tetraspanin-enriched microdomain (ortholog) NW_004955510 463548 490635 + 102028319 AGCD01066149;AGCD01066150;GBDJ01088086;XM_005407874 XP_005407931 MODEL 9036604 trna Trnai-aau transfer RNA isoleucine (anticodon AAU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978794 AGCD01050493;AGCD01050590;AGCD01050591;AGCD01050597;AGCD01051466;AGCD01051471;AGCD01057606;AGCD01077147 MODEL 8849313 protein-coding LOC102023431 receptor-type tyrosine-protein phosphatase V-like NW_004955406 38253569 38273082 + 102023431 AGCD01006599;GBDF01088796;XM_005375209;XM_013522347;XM_013522350 XP_005375266;XP_013377801;XP_013377804 MODEL 39132074 snorna SNORA72 Small nucleolar RNA SNORA72 8999491 protein-coding LOC102010781 proline-rich proteoglycan 2-like NW_004955463 13403383 13407571 + 102010781 AGCD01049866;GBDI01274687;XM_005398474 XP_005398531 MODEL 8803265 protein-coding Ssb small RNA binding exonuclease protection factor La ENCODES a protein that exhibits poly(U) RNA binding (ortholog); RNA binding (ortholog); sequence-specific mRNA binding (ortholog); INVOLVED IN IRES-dependent viral translational initiation (ortholog); nuclear histone mRNA catabolic process (ortholog); protein localization to cytoplasmic stress granule (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955449 4806468 4815175 - 102024070 AGCD01041895;AGCD01041896;AGCD01041897;AGCD01041898;GBCQ01004014;XM_013518786 XP_013374240 MODEL 8868414 protein-coding Tle2 TLE family member 2, transcriptional corepressor ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); neutropenia (ortholog); progressive myoclonus epilepsy 9 (ortholog); FOUND IN focal adhesion (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955495 5347496 5366743 + 102026761 AGCD01062002;GBBH01012059;GBDI01296754;XM_013505226 XP_013360680 MODEL 39133379 snrna U4 U4 spliceosomal RNA 10226362 protein-coding LOC106149910 uncharacterized LOC106149910 NW_004955457 10351685 10352493 - 106149910 AGCD01046954;GBCQ01113664;XM_013520666 XP_013376120 MODEL 8810204 protein-coding Rundc3b RUN domain containing 3B ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955432 5032468 5186402 + 102026143 AGCD01030755;AGCD01030756;AGCD01030757;AGCD01030758;AGCD01030759;AGCD01030760;AGCD01030761;AGCD01030762;AGCD01030763;AGCD01030764;AGCD01030765;AGCD01030766;AGCD01030767;GBDF01251872;XM_013515918 XP_013371372 MODEL 8911222 protein-coding C1ql1 complement C1q like 1 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN maintenance of synapse structure (ortholog); motor learning (ortholog); neuron remodeling (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cerebellar climbing fiber to Purkinje cell synapse (ortholog); climbing fiber (ortholog); cytoplasm (ortholog) NW_004955451 17729106 17734657 - 102008049 AGCD01043769;GBBH01106823;GBCQ01122993;XM_005394651 XP_005394708 MODEL 8723676 protein-coding Slc2a5 solute carrier family 2 member 5 ENCODES a protein that exhibits fructose binding (ortholog); fructose transmembrane transporter activity (ortholog); INVOLVED IN cellular response to fructose stimulus (ortholog); D-glucose transmembrane transport (ortholog); fructose import across plasma membrane (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); chromosome 1p36 deletion syndrome (ortholog); long QT syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog); sarcolemma (ortholog) NW_004955486 4194568 4208568 + 102024804 AGCD01059057;GBDF01002394;XM_005404044;XM_013504322 XP_005404101;XP_013359776 MODEL 8971068 protein-coding Ptcd3 pentatricopeptide repeat domain 3 ENCODES a protein that exhibits ribosomal small subunit binding (ortholog); rRNA binding (ortholog); INVOLVED IN mitochondrial translation (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 51 (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 31 (ortholog); FOUND IN cytosol (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955424 1480934 1507621 - 102020581 AGCD01024237;GBDI01127765;XM_005385406;XM_013514671;XM_013514672 XP_005385463;XP_013370125;XP_013370126 MODEL 9015783 protein-coding Sez6 seizure related 6 homolog INVOLVED IN activation of protein kinase C activity (ortholog); adult locomotory behavior (ortholog); cerebellar Purkinje cell layer development (ortholog); ASSOCIATED WITH Childhood Schizophrenia (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN apical dendrite (ortholog); dendritic shaft (ortholog); dendritic spine (ortholog) NW_004955481 4175637 4220809 + 102017336 AGCD01056932;GBBH01109329;XM_005402699;XM_005402700;XM_005402701;XM_005402702;XM_013503418 XP_005402756;XP_005402757;XP_005402758;XP_005402759;XP_013358872 MODEL 8948031 protein-coding Lins1 lines homolog 1 INVOLVED IN cognition (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive intellectual developmental disorder 27 (ortholog); chromosome 15q26-qter deletion syndrome (ortholog) NW_004955416 27585172 27609780 - 102007659 AGCD01017618;GBDK01117296;XM_005381639 XP_005381696 MODEL 8984424 pseudo LOC102007046 protein SET-like NW_004955515 1700873 1701654 - 102007046 AGCD01067233 MODEL 8895606 protein-coding LOC102012002 probable N-acetyltransferase CML1 NW_004955424 12018064 12026229 + 102012002 AGCD01024589;GBCQ01036370;XM_005385547;XM_005385548;XM_005385549;XM_005385551;XM_013514658;XM_013514659;XM_013514660;XM_013514661 XP_005385604;XP_005385605;XP_005385606;XP_005385608;XP_013370112;XP_013370113;XP_013370114;XP_013370115 MODEL 10260250 ncrna LOC106147074 uncharacterized LOC106147074 NW_004955515 407228 409282 + 106147074 AGCD01067198;GBDJ01388559;XR_001231804 MODEL 8846591 protein-coding LOC102017641 tubulin beta-2A chain-like NW_004955465 10090568 10092941 + 102017641 AGCD01050501;GBDK01005775;XM_005398904 XP_005398961 MODEL 8879374 protein-coding LOC102006674 ATP-binding cassette sub-family A member 3-like NW_004955493 488799 638781 + 102006674 AGCD01060854;AGCD01060855;AGCD01060856;AGCD01060857;AGCD01060858;GBDF01290732;XM_005405051;XM_005405052;XM_013504904;XM_013504905;XM_013504906;XM_013504907;XM_013504908 XP_005405108;XP_005405109;XP_013360358;XP_013360359;XP_013360360;XP_013360361;XP_013360362 MODEL 8882055 protein-coding Ndufa5 NADH:ubiquinone oxidoreductase subunit A5 INVOLVED IN respiratory electron transport chain (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Facial Nerve Injuries (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); protein-containing complex (ortholog) NW_004955479 5065948 5080215 - 102013081 AGCD01056340;GBCB01006579;XM_005402326;XM_013503295 XP_005402383;XP_013358749 MODEL 9009728 protein-coding Pik3r6 phosphoinositide-3-kinase regulatory subunit 6 ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase regulator activity (ortholog); 1-phosphatidylinositol-4,5-bisphosphate 3-kinase activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); positive regulation of angiogenesis (ortholog); positive regulation of MAP kinase activity (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; insulin signaling pathway; FOUND IN membrane (ortholog); phosphatidylinositol 3-kinase complex, class IA (ortholog); phosphatidylinositol 3-kinase complex, class IB (ortholog) NW_004955467 8104242 8157637 + 102012079 AGCD01051444;GBCE01018656;XM_005399389;XM_005399391;XM_013522213 XP_005399446;XP_005399448;XP_013377667 MODEL 39131707 snorna SNORD90 small nucleolar RNA, C/D box 90 8824582 pseudo LOC102007047 hippocampus abundant transcript-like protein 1 pseudogene NW_004955516 606224 607991 + 102007047 AGCD01067389 MODEL 9015206 ncrna LOC102015726 uncharacterized LOC102015726 NW_004955485 804026 805336 - 102015726 AGCD01058459;GBDF01265224;XR_263902 MODEL 9017082 protein-coding Pabpn1l PABPN1 like, cytoplasmic ENCODES a protein that exhibits poly(A) binding (ortholog); RNA binding (ortholog); INVOLVED IN maternal-to-zygotic transition of gene expression (ortholog); negative regulation of protein ubiquitination (ortholog); negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process (ortholog); ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 4 (ortholog); Fanconi anemia (ortholog); FOUND IN cytoplasm (ortholog) NW_004955541 2718076 2720322 - 102006496 AGCD01071423;XM_005411024 XP_005411081 MODEL 8737570 protein-coding LOC102011157 olfactory receptor 2B11-like NW_004955576 1315227 1322081 + 102011157 AGCD01075372;XM_005413952 XP_005414009 MODEL 8836856 protein-coding Rergl RERG like ASSOCIATED WITH prostate cancer (ortholog) NW_004955413 14324734 14334992 - 102010353 AGCD01014040;GBDJ01387403;XM_005379035;XM_005379036 XP_005379092;XP_005379093 MODEL 9042431 protein-coding LOC102010782 cytochrome P450 4A6-like NW_004955464 11443634 11459566 + 102010782 AGCD01050154;GBCQ01010107;XM_005398643 XP_005398700 MODEL 39133382 snrna U4 U4 spliceosomal RNA 8833280 protein-coding Eny2 ENY2 transcription and export complex 2 subunit ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); poly(A)+ mRNA export from nucleus (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; FOUND IN DUBm complex (ortholog); mitochondrion (ortholog); nuclear pore nuclear basket (ortholog) NW_004955417 16750563 16760839 + 102022081 AGCD01018273;GBDF01088991;XM_005381877;XM_005381878 XP_005381934;XP_005381935 MODEL 8756816 protein-coding Pcbp1 poly(rC) binding protein 1 ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); mRNA binding (ortholog); RNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); viral RNA genome replication (ortholog); PARTICIPATES IN iron homeostasis pathway; iron storage pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); cytosol (ortholog) NW_004955424 15045642 15047184 - 102010600 AGCD01024682;GBBH01003850;GBDK01016452;XM_005385632 XP_005385689 MODEL 8751704 ncrna LOC102009699 uncharacterized LOC102009699 NW_004955463 10028163 10058844 + 102009699 AGCD01049805;GBDF01179188;XR_263167;XR_263168 MODEL 8814603 protein-coding Ripk4 receptor interacting serine/threonine kinase 4 ENCODES a protein that exhibits protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN morphogenesis of an epithelium (ortholog); positive regulation of NF-kappaB transcription factor activity (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH Bartsocas-Papas Syndrome 1 (ortholog); cataract 9 multiple types (ortholog); Curly Hair-Ankyloblepharon-Nail Dysplasia Syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955407 39728645 39748752 + 102020205 AGCD01007835;GBBH01093656;XM_005375848;XM_005375849;XM_013505258 XP_005375905;XP_005375906;XP_013360712 MODEL 8785871 protein-coding Ppfia1 PTPRF interacting protein alpha 1 INVOLVED IN cortical microtubule organization (ortholog); negative regulation of protein localization to plasma membrane (ortholog); negative regulation of stress fiber assembly (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN axon (ortholog); cell cortex (ortholog); cytosol (ortholog) NW_004955422 15892945 15998786 - 102019607 AGCD01022883;AGCD01022884;AGCD01022885;AGCD01022886;GBDF01043150;GBDJ01234038;XM_013514113 XP_013369567 MODEL 8909233 protein-coding LOC102024472 GTPase IMAP family member 7-like NW_004955491 5229068 5233840 - 102024472 AGCD01060475;AGCD01060476;XM_005404791 XP_005404848 MODEL 8830631 pseudo LOC102009701 heterogeneous nuclear ribonucleoprotein A1-like NW_004955411 2718176 2739446 - 102009701 AGCD01011515;AGCD01011516 MODEL 8794075 protein-coding LOC102012004 cx9C motif-containing protein 4-like NW_004955425 2298142 2298943 - 102012004 AGCD01025257;GBDF01080910;XM_005385839 XP_005385896 MODEL 10277283 ncrna LOC106147075 uncharacterized LOC106147075 NW_004955516 3518591 3522860 + 106147075 AGCD01067494;GBCB01089270;XR_001231805;XR_001231806 MODEL 8986275 protein-coding Pdilt protein disulfide isomerase like, testis expressed ENCODES a protein that exhibits protein disulfide isomerase activity (ortholog); protein folding chaperone (ortholog); INVOLVED IN germ cell migration (ortholog); spermatid development (ortholog) NW_004955442 4006525 4045037 - 102014087 AGCD01037517;GBDF01000360;XM_005391126 XP_005391183 MODEL 39132076 snorna SNORA72 Small nucleolar RNA SNORA72 9054629 protein-coding Sort1 sortilin 1 ENCODES a protein that exhibits enzyme binding (ortholog); nerve growth factor binding (ortholog); nerve growth factor receptor activity (ortholog); INVOLVED IN D-glucose import (ortholog); endocytosis (ortholog); endosome to lysosome transport (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); autistic disorder (ortholog); cardiovascular system disease (ortholog); FOUND IN cell surface (ortholog); cerebellar climbing fiber to Purkinje cell synapse (ortholog); clathrin-coated pit (ortholog) NW_004955435 12725952 12819280 - 102026666 AGCD01033163;AGCD01033164;AGCD01033165;AGCD01033166;AGCD01033167;GBBH01142331;GBCQ01063656;XM_013516443;XM_013516444 XP_013371897;XP_013371898 MODEL 8968399 protein-coding LOC102021725 serine protease 52-like NW_004955403 52095441 52106295 - 102021725 AGCD01003001;GBDF01120892;XM_005373801 XP_005373858 MODEL 8869787 ncrna LOC102018766 uncharacterized LOC102018766 NW_004955437 5832129 5834651 + 102018766 AGCD01034403;GBDF01189685;XR_261858 MODEL 8865728 protein-coding Ssbp1 single stranded DNA binding protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN DNA-templated DNA replication (ortholog); mitochondrion organization (ortholog); positive regulation of helicase activity (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); FOUND IN mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955494 1807885 1826375 - 102013623 AGCD01061424;GBCE01077691;XM_005405404;XM_013505023 XP_005405461;XP_013360477 MODEL 8803216 protein-coding Plcxd1 phosphatidylinositol specific phospholipase C X domain containing 1 ASSOCIATED WITH autistic disorder (ortholog) NW_004955499 574421 585386 + 102023053 AGCD01063242;AGCD01063243;AGCD01063244;GBDK01020725;GBDK01033039;XM_013505584;XM_013505585;XM_013505586;XM_013505587;XM_013505588 XP_013361038;XP_013361039;XP_013361040;XP_013361041;XP_013361042 MODEL 9038553 protein-coding LOC102019244 translation initiation factor IF-2-like NW_004955408 5772215 5775715 - 102019244 AGCD01008152;GBCB01043675;GBDF01074209;XM_013508552 XP_013364006 MODEL 8792751 protein-coding C1ql2 complement C1q like 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); postsynaptic density assembly (ortholog); regulation of synapse maturation (ortholog); FOUND IN cerebellar climbing fiber to Purkinje cell synapse (ortholog); extracellular region (ortholog); glutamatergic synapse (ortholog) NW_004955459 10569064 10571064 + 102024767 AGCD01048192;GBDK01160507;XM_013521053 XP_013376507 MODEL 39133383 snrna U4 U4 spliceosomal RNA 8930453 protein-coding Pgbd4 piggyBac transposable element derived 4 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955496 1861479 1869071 + 102003888 AGCD01062260;GBCQ01012331;XM_013505386;XM_013505387;XM_013505388;XM_013505389;XM_013505390;XM_013505391 XP_013360840;XP_013360841;XP_013360842;XP_013360843;XP_013360844;XP_013360845 MODEL 9052965 protein-coding Slc2a6 solute carrier family 2 member 6 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); regulation of glycolytic process (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); Kleefstra syndrome 1 (ortholog); FOUND IN lysosomal membrane (ortholog) NW_004955513 2796086 2802051 - 102017903 AGCD01066890;GBBH01198307;XM_005408447;XM_005408448 XP_005408504;XP_005408505 MODEL 9041808 protein-coding Eogt EGF domain specific O-linked N-acetylglucosamine transferase ENCODES a protein that exhibits protein O-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation (ortholog); ASSOCIATED WITH Adams-Oliver syndrome (ortholog); Adams-Oliver Syndrome 4 (ortholog); genetic disease (ortholog) NW_004955421 18845626 18879008 + 102013835 AGCD01022058;AGCD01022059;GBDJ01390366;XM_005383814;XM_005383815;XM_013513795 XP_005383871;XP_005383872;XP_013369249 MODEL 8762701 protein-coding Ptch1 patched 1 ENCODES a protein that exhibits cholesterol binding (ortholog); cyclin binding (ortholog); hedgehog family protein binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); brain development (ortholog); branching involved in ureteric bud morphogenesis (ortholog); PARTICIPATES IN glypican signaling pathway; Hedgehog signaling pathway; ASSOCIATED WITH Aberrant Crypt Foci (ortholog); acute myeloid leukemia (ortholog); anterior segment dysgenesis 5 (ortholog); FOUND IN apical part of cell (ortholog); axonal growth cone (ortholog); caveola (ortholog) NW_004955422 22362330 22418062 - 102005945 AGCD01023158;GBCE01185669;GBDF01209723;XM_013514312 XP_013369766 MODEL 8707092 trna Trnai-gau transfer RNA isoleucine (anticodon GAU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955500 8293826 8293897 + 101978795 AGCD01063986 MODEL 8852521 protein-coding Wdsub1 WD repeat, sterile alpha motif and U-box domain containing 1 ASSOCIATED WITH autistic disorder (ortholog) NW_004955449 14301798 14348735 + 102006968 AGCD01042164;GBDI01172204;XM_005393376;XM_005393377;XM_013518706;XM_013518707;XR_001235809 XP_005393433;XP_005393434;XP_013374160;XP_013374161 MODEL 8713186 ncrna LOC102006677 uncharacterized LOC102006677 NW_004955422 22593229 22599979 + 102006677 AGCD01023163;GBDF01074983;XR_260905 MODEL 8781275 protein-coding Poc1a POC1 centriolar protein A INVOLVED IN bone development (ortholog); growth plate cartilage chondrocyte development (ortholog); mitotic spindle organization (ortholog); ASSOCIATED WITH argininosuccinic aciduria (ortholog); congenital disorder of glycosylation In (ortholog); genetic disease (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955532 3707680 3790565 - 102010197 AGCD01070295;AGCD01070296;AGCD01070297;AGCD01070298;GBBH01006023;GBDF01155240;XM_013507661;XM_013507662;XM_013507663;XM_013507664 XP_013363115;XP_013363116;XP_013363117;XP_013363118 MODEL 9024737 protein-coding LOC102008533 cytochrome c oxidase subunit 7C, mitochondrial ASSOCIATED WITH Alzheimer's disease (ortholog); Neurodevelopmental Disorders (ortholog); obesity (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955418 24413883 24416530 - 102008533 AGCD01019331;GBCE01002366;XM_005382301 XP_005382358 MODEL 8701712 protein-coding LOC102012802 uncharacterized LOC102012802 NW_004955541 36527 43417 + 102012802 AGCD01071344;GBDI01026247;XM_005410957;XM_013507937;XM_013507938 XP_005411014;XP_013363391;XP_013363392 MODEL 8855238 protein-coding Prpsap2 phosphoribosyl pyrophosphate synthetase associated protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN bone development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 2 (ortholog); Joubert syndrome 1 (ortholog); FOUND IN protein-containing complex (ortholog); ribose phosphate diphosphokinase complex (ortholog) NW_004955467 676845 722175 - 102007531 AGCD01051231;AGCD01051232;AGCD01051233;AGCD01051234;AGCD01051235;GBDK01279678;XM_005399288;XM_013522228 XP_005399345;XP_013377682 MODEL 8802803 protein-coding LOC102007048 liver carboxylesterase 1-like NW_004955433 13239101 13268057 - 102007048 AGCD01031682;GBDF01064548;XM_005388323;XM_005388325 XP_005388380;XP_005388382 MODEL 8748231 ncrna LOC102011163 uncharacterized LOC102011163 NW_004955450 15153068 15157236 - 102011163 AGCD01042782;GBCB01071256;XR_001235830;XR_001235831 MODEL 10351740 protein-coding LOC106149911 translation initiation factor IF-2-like NW_004955457 12733466 12735613 - 106149911 AGCD01047026;GBDK01226244;XM_013520667 XP_013376121 MODEL 8931538 protein-coding Resf1 retroelement silencing factor 1 ENCODES a protein that exhibits histone methyltransferase binding (ortholog); INVOLVED IN response to bacterium (ortholog); transposable element silencing by heterochromatin formation (ortholog); FOUND IN nucleus (ortholog) NW_004955505 3684848 3709624 - 102011340 AGCD01065047;GBDJ01085100;XM_005407130;XM_005407131;XM_013505939 XP_005407187;XP_005407188;XP_013361393 MODEL 9009387 protein-coding LOC102005594 olfactory receptor 1L6-like NW_004955419 5236631 5237566 - 102005594 AGCD01019793;XM_005382523 XP_005382580 MODEL 8901131 protein-coding Runx1 RUNX family transcription factor 1 PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); asthma (ortholog) NW_004955407 34108653 34342657 - 102029935 AGCD01007717;AGCD01007718;AGCD01007719;AGCD01007720;GBBH01187973;XM_005375708;XM_005375710 XP_005375765;XP_005375767 MODEL 8971304 protein-coding Rad23a RAD23 homolog A, nucleotide excision repair protein ENCODES a protein that exhibits kinase binding (ortholog); polyubiquitin modification-dependent protein binding (ortholog); ubiquitin-specific protease binding (ortholog); INVOLVED IN DNA damage response (ortholog); nucleotide-excision repair (ortholog); positive regulation of cell cycle (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955415 31991478 31997277 + 102026420 AGCD01016704;AGCD01016705;GBDF01009119;XM_005381043;XM_013512243 XP_005381100;XP_013367697 MODEL 8904569 pseudo LOC102010786 sodium- and chloride-dependent creatine transporter 1 pseudogene NW_004955412 1303340 1305225 + 102010786 AGCD01012514;XM_005378613 MODEL 8905044 pseudo LOC102010427 signal recognition particle subunit SRP72-like NW_004955569 166179 187432 - 102010427 AGCD01074565;AGCD01074566 MODEL 8928753 ncrna LOC102019246 uncharacterized LOC102019246 NW_004955408 33245705 33259346 + 102019246 AGCD01008864;AGCD01008865;XR_259729 MODEL 8887094 protein-coding LOC102011607 3-beta-hydroxysteroid sulfotransferase-like NW_004955609 280400 319841 - 102011607 AGCD01077056;AGCD01077057;GBCB01061931;XM_005414930 XP_005414987 MODEL 39133385 snrna U4 U4 spliceosomal RNA 9042916 protein-coding Slc6a18 solute carrier family 6 member 18 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); neutral L-amino acid transmembrane transporter activity (ortholog); neutral L-amino acid:sodium:chloride symporter activity (ortholog); INVOLVED IN amino acid transmembrane transport (ortholog); amino acid transport (ortholog); hyperosmotic response (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 2 (ortholog); dopamine transporter deficiency syndrome (ortholog); hypertension (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); plasma membrane (ortholog) NW_004955504 634615 644667 + 102004836 AGCD01064824;GBCQ01008396;XM_005407047;XM_013505899;XM_013505900;XM_013505901;XM_013505902;XM_013505903;XM_013505904;XM_013505905;XM_013505907 XP_005407104;XP_013361353;XP_013361354;XP_013361355;XP_013361356;XP_013361357;XP_013361358;XP_013361359;XP_013361361 MODEL 151707878 snorna SNORD92 small nucleolar RNA, C/D box 92 8952553 protein-coding Rbbp8nl RBBP8 N-terminal like ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 33 (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955528 1641291 1655920 + 102027897 AGCD01069567;GBBH01026084;XM_005410020;XM_013507496;XM_013507497 XP_005410077;XP_013362950;XP_013362951 MODEL 10093921 pseudo LOC106147077 T-cell immunomodulatory protein-like NW_004955516 685366 686407 - 106147077 AGCD01067394;AGCD01067395 MODEL 8905832 protein-coding Tle3 TLE family member 3, transcriptional corepressor INVOLVED IN negative regulation of cold-induced thermogenesis (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Bloom syndrome (ortholog); Breast Neoplasms (ortholog); FOUND IN beta-catenin-TCF complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955450 6604915 6645305 + 102011928 AGCD01042523;GBDJ01015569;XM_005393646;XM_005393647;XM_005393648;XM_005393649;XM_005393650;XM_005393651;XM_005393652;XM_005393654;XM_005393655;XM_005393656;XM_005393657;XM_013518996;XM_013518998 XP_005393703;XP_005393704;XP_005393705;XP_005393706;XP_005393707;XP_005393708;XP_005393709;XP_005393711;XP_005393712;XP_005393713;XP_005393714;XP_013374450;XP_013374452 MODEL 8798180 protein-coding Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing ENCODES a protein that exhibits 1-phosphatidylinositol-3-phosphate 5-kinase activity (ortholog); 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); 1-phosphatidylinositol-5-kinase activity (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate metabolic process (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); intracellular signal transduction (ortholog); PARTICIPATES IN inositol metabolic pathway; phosphoinositide metabolic pathway; ASSOCIATED WITH Crohn's disease (ortholog); Fleck corneal dystrophy (ortholog); genetic disease (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955457 6749226 6841855 - 102005112 AGCD01046851;AGCD01046852;AGCD01046853;AGCD01046854;GBCQ01174522;XM_005396961;XM_005396963;XM_005396964;XM_013520753;XM_013520754;XM_013520755;XM_013520756;XM_013520757;XM_013520758;XM_013520759 XP_005397018;XP_005397020;XP_005397021;XP_013376207;XP_013376208;XP_013376209;XP_013376210;XP_013376211;XP_013376212;XP_013376213 MODEL 39132060 snorna SNORD94 small nucleolar RNA, C/D box 94 9000533 protein-coding Trappc1 trafficking protein particle complex subunit 1 ASSOCIATED WITH common variable immunodeficiency (ortholog); Diamond-Blackfan anemia (ortholog); dyskeratosis congenita (ortholog); FOUND IN TRAPP complex (ortholog) NW_004955467 9010936 9012796 + 102026844 AGCD01051481;GBDF01046835;XM_005399442 XP_005399499 MODEL 9066614 pseudo LOC102018769 zinc finger CCHC-type and RNA-binding motif-containing protein 1 pseudogene NW_004955439 2361444 2362083 + 102018769 AGCD01035643 MODEL 8905709 ncrna LOC102007052 uncharacterized LOC102007052 NW_004955436 7964613 7966777 - 102007052 AGCD01033721;GBDF01079769;XR_261769 MODEL 8891763 protein-coding Smim23 small integral membrane protein 23 NW_004955408 24626468 24633678 + 102022787 AGCD01008621;GBDF01002835;XM_005376330;XM_013507143;XM_013507147 XP_005376387;XP_013362597;XP_013362601 MODEL 8927694 protein-coding Plcxd2 phosphatidylinositol specific phospholipase C X domain containing 2 NW_004955427 12094403 12143557 + 102021373 AGCD01027203;AGCD01027204;GBDF01277030;XM_005386368;XM_005386369;XM_013515219 XP_005386425;XP_005386426;XP_013370673 MODEL 8963835 protein-coding C1ql3 complement C1q like 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); postsynaptic density assembly (ortholog); regulation of synapse organization (ortholog); ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); FOUND IN extracellular region (ortholog); glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog) NW_004955429 11287486 11296716 + 102030103 AGCD01028686;GBDJ01404596;XM_005386970 XP_005387027 MODEL 8713631 protein-coding Tspan15 tetraspanin 15 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN negative regulation of Notch signaling pathway (ortholog); protein localization to plasma membrane (ortholog); protein maturation (ortholog); FOUND IN cell junction (ortholog); cell surface (ortholog); cytosol (ortholog) NW_004955437 21643018 21687355 - 102022633 AGCD01034919;GBDI01066539;XM_005390084;XM_013517075;XM_013517076 XP_005390141;XP_013372529;XP_013372530 MODEL 8834610 protein-coding Pcbp2 poly(rC) binding protein 2 ENCODES a protein that exhibits C-rich single-stranded DNA binding (ortholog); DNA binding (ortholog); enzyme binding (ortholog); INVOLVED IN chromatin looping (ortholog); IRES-dependent viral translational initiation (ortholog); negative regulation of cGAS/STING signaling pathway (ortholog); PARTICIPATES IN iron homeostasis pathway; iron storage pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955458 747770 773885 + 102012505 AGCD01047153;AGCD01047154;GBBH01003854;GBDJ01100806;XM_013520929;XM_013520930;XM_013520931;XM_013520932;XM_013520933;XM_013520934;XM_013520935;XM_013520936;XM_013520937 XP_013376383;XP_013376384;XP_013376385;XP_013376386;XP_013376387;XP_013376388;XP_013376389;XP_013376390;XP_013376391 MODEL 9037413 pseudo LOC102003782 solute carrier organic anion transporter family member 4C1 pseudogene NW_004955496 8201732 8203098 - 102003782 AGCD01062392 MODEL 9003117 protein-coding Runx1t1 RUNX1 partner transcriptional co-repressor 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor binding (ortholog); identical protein binding (ortholog); INVOLVED IN fat cell differentiation (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of fat cell differentiation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); basal cell carcinoma (ortholog); Dwarfism (ortholog); FOUND IN nuclear matrix (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955417 8580355 8714267 - 102016265 AGCD01018029;AGCD01018030;AGCD01018031;AGCD01018032;GBCB01020155;XM_005381778 XP_005381835 MODEL 8828688 protein-coding Slc2a8 solute carrier family 2 member 8 ENCODES a protein that exhibits D-glucose binding (ortholog); D-glucose transmembrane transporter activity (ortholog); dehydroascorbic acid transmembrane transporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); dehydroascorbic acid transport (ortholog); fructose transmembrane transport (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN plasma membrane (ortholog); synaptic vesicle (ortholog) NW_004955419 1177752 1187157 - 102003967 AGCD01019644;GBDI01010591;XM_005382427;XM_005382428;XM_005382429 XP_005382484;XP_005382485;XP_005382486 MODEL 8772389 protein-coding Pacc1 proton activated chloride channel 1 ENCODES a protein that exhibits pH-gated chloride channel activity (ortholog); INVOLVED IN chloride transport (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955406 5036167 5058189 + 102021304 AGCD01005710;AGCD01005711;GBDF01127264;XM_005374743;XM_013520154 XP_005374800;XP_013375608 MODEL 39133386 snrna U4 U4 spliceosomal RNA 8819473 protein-coding Ptch2 patched 2 ENCODES a protein that exhibits hedgehog family protein binding (ortholog); smoothened binding (ortholog); INVOLVED IN cell fate determination (ortholog); epidermal cell fate specification (ortholog); epidermis development (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); Breast Cancer, Familial (ortholog); breast carcinoma (ortholog) NW_004955464 13387844 13403991 + 102009156 AGCD01050274;AGCD01050275;GBDJ01143446;XM_005398741;XM_013521618;XM_013521619;XM_013521620;XM_013521621;XM_013521622;XM_013521623;XM_013521624;XM_013521625 XP_005398798;XP_013377072;XP_013377073;XP_013377074;XP_013377075;XP_013377076;XP_013377077;XP_013377078;XP_013377079 MODEL 39132071 snorna SNORA72 Small nucleolar RNA SNORA72 8844354 protein-coding Ppfia2 PTPRF interacting protein alpha 2 ENCODES a protein that exhibits protein-containing complex binding (ortholog); structural constituent of postsynaptic density (ortholog); structural constituent of presynapse (ortholog); INVOLVED IN dense core granule cytoskeletal transport (ortholog); regulation of dendritic spine development (ortholog); regulation of dendritic spine morphogenesis (ortholog); FOUND IN dendritic spine (ortholog); glutamatergic synapse (ortholog); postsynaptic density (ortholog) NW_004955405 19837749 20291666 - 102024420 AGCD01005047;AGCD01005048;AGCD01005049;AGCD01005050;AGCD01005051;AGCD01005052;AGCD01005053;AGCD01005054;GBCE01046938;XM_005374377;XM_005374388;XM_013517986;XM_013517988;XM_013517990;XM_013517995;XM_013518004;XM_013518006;XM_013518011;XM_013518014;XM_013518017;XM_013518024;XM_013518025 XP_005374434;XP_005374445;XP_013373440;XP_013373442;XP_013373444;XP_013373449;XP_013373458;XP_013373460;XP_013373465;XP_013373468;XP_013373471;XP_013373478;XP_013373479 MODEL 8970252 ncrna LOC102012807 uncharacterized LOC102012807 NW_004955442 3947192 3955740 - 102012807 AGCD01037517;GBBH01153642;XR_262112 MODEL 8795598 protein-coding Pdk1 pyruvate dehydrogenase kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); protein kinase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); cell surface receptor signaling pathway (ortholog); hypoxia-inducible factor-1alpha signaling pathway (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; Fc epsilon receptor mediated signaling pathway; pyruvate metabolic pathway; ASSOCIATED WITH split hand-foot malformation 5 (ortholog); FOUND IN mitochondrion (ortholog); pyruvate dehydrogenase complex (ortholog) NW_004955449 2546790 2582402 - 102013461 AGCD01041829;AGCD01041830;GBDF01054828;XM_005393209;XM_005393210;XM_005393211;XM_005393212;XM_005393213 XP_005393266;XP_005393267;XP_005393268;XP_005393269;XP_005393270 MODEL 8787900 protein-coding Poc1b POC1 centriolar protein B INVOLVED IN acrosome assembly (ortholog); cell morphogenesis (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH Childhood Schizophrenia (ortholog); cone-rod dystrophy (ortholog); cone-rod dystrophy 20 (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955405 26720279 26786385 - 102014527 AGCD01005204;GBDF01005071;XM_005374437;XM_013518180 XP_005374494;XP_013373634 MODEL 8710588 protein-coding Sez6l seizure related 6 homolog like INVOLVED IN activation of protein kinase C activity (ortholog); adult locomotory behavior (ortholog); cerebellar Purkinje cell layer development (ortholog); ASSOCIATED WITH cataract 23 (ortholog); prostate cancer (ortholog); FOUND IN endoplasmic reticulum (ortholog); glutamatergic synapse (ortholog); neuronal cell body (ortholog) NW_004955455 816129 992776 + 102013250 AGCD01045565;AGCD01045566;AGCD01045567;GBDF01112713;XM_005396140;XM_013520286 XP_005396197;XP_013375740 MODEL 8769524 pseudo LOC102005595 26S proteasome non-ATPase regulatory subunit 8 pseudogene NW_004955419 11675117 11798906 - 102005595 AGCD01019960;AGCD01019961 MODEL 8704248 protein-coding Ssbp2 single stranded DNA binding protein 2 ASSOCIATED WITH bipolar disorder (ortholog); Neurodevelopmental Disorders (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog) NW_004955418 28562735 28813541 + 102005473 AGCD01019442;AGCD01019443;AGCD01019444;AGCD01019445;GBDF01111104;XM_013512973 XP_013368427 MODEL 39133447 snorna SNORD96 Small nucleolar RNA SNORD96 family 9045863 pseudo LOC102008136 ras-related protein Rab-8B pseudogene NW_004955431 13166481 13167496 - 102008136 AGCD01030286 MODEL 10318582 ncrna LOC106149912 uncharacterized LOC106149912 NW_004955457 358067 371560 - 106149912 AGCD01046709;AGCD01046710;AGCD01046711;XR_001236377 MODEL 8826626 protein-coding LOC102010789 histone H1.0 ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN heterochromatin formation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adenylosuccinase lyase deficiency (ortholog); COVID-19 (ortholog); FOUND IN actin cytoskeleton (ortholog); chromatin (ortholog); euchromatin (ortholog) NW_004955413 24182547 24184588 + 102010789 AGCD01014355;GBBH01030914;XM_005379227 XP_005379284 MODEL 8782912 protein-coding Tle4 TLE family member 4, transcriptional corepressor ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN beta-catenin-TCF complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955530 3795336 3932596 - 102014942 AGCD01069963;AGCD01069964;GBCC01033359;GBDF01281043;XM_013507550 XP_013363004 MODEL 8954927 protein-coding LOC102024473 chromosome unknown open reading frame, human C11orf96 ASSOCIATED WITH intellectual disability (ortholog) NW_004955422 3639798 3641449 - 102024473 AGCD01022525;AGCD01022526;GBCQ01062880;GBDJ01000004;XM_005384081 XP_005384138 MODEL 8779020 protein-coding Ndufa6 NADH:ubiquinone oxidoreductase subunit A6 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Alzheimer's disease (ortholog); common variable immunodeficiency 4 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955413 27485678 27491757 - 102004371 AGCD01014509;GBCQ01011147;XM_005379396 XP_005379453 MODEL 8947804 protein-coding Rad23b RAD23 homolog B, nucleotide excision repair protein ENCODES a protein that exhibits DNA damage sensor activity (ortholog); polyubiquitin modification-dependent protein binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); DNA damage response (ortholog); embryonic organ development (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH Craniofacial Abnormalities (ortholog); male infertility (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955419 19428415 19473181 - 102024570 AGCD01020211;AGCD01020212;AGCD01020213;AGCD01020214;GBDF01262473;XM_005382764 XP_005382821 MODEL 9024104 pseudo LOC102012006 RWD domain-containing protein 1-like NW_004955502 2548815 2559921 - 102012006 AGCD01064301 MODEL 8920125 protein-coding Plcxd3 phosphatidylinositol specific phospholipase C X domain containing 3 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog) NW_004955426 25563222 25719939 - 102026768 AGCD01026723;AGCD01026724;AGCD01026725;AGCD01026726;AGCD01026727;AGCD01026728;GBCQ01014740;XM_005386247 XP_005386304 MODEL 8982443 ncrna LOC102011610 uncharacterized LOC102011610 NW_004955451 5820260 5823021 - 102011610 AGCD01043179;GBDJ01389060;XR_001236001;XR_001236002 MODEL 8846332 ncrna LOC102006682 uncharacterized LOC102006682 NW_004955423 21568062 21582267 + 102006682 AGCD01023945;GBDF01193731;XR_260985 MODEL 9020231 ncrna LOC102021734 uncharacterized LOC102021734 NW_004955407 40982526 40988715 + 102021734 AGCD01007854;GBCE01120715;XR_001231377;XR_001231379 MODEL 8958015 protein-coding Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); molecular condensate scaffold activity (ortholog); INVOLVED IN B cell homeostasis (ortholog); B cell receptor signaling pathway (ortholog); blood vessel morphogenesis (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; erythropoietin signaling pathway; Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrial heart septal defect (ortholog); Atrial Septal Defect, Secundum Type (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); GTPase complex (ortholog) NW_004955441 6649895 6724271 - 102013878 AGCD01036937;AGCD01036938;GBCB01041404;XM_005391044 XP_005391101 MODEL 8901837 protein-coding Tle5 TLE family member 5, transcriptional modulator ENCODES a protein that exhibits identical protein binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH colon cancer (ortholog); Myocardial Ischemia (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleus (ortholog) NW_004955495 5328299 5336195 + 102011556 AGCD01062000;GBCE01002154;GBDI01010761;XM_013505260 XP_013360714 MODEL 8856266 protein-coding Lipa lipase A, lysosomal acid type ENCODES a protein that exhibits lipase activity (ortholog); sterol ester esterase activity (ortholog); INVOLVED IN acute inflammatory response (ortholog); adaptive thermogenesis (ortholog); adipose tissue development (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; ASSOCIATED WITH autoimmune lymphoproliferative syndrome (ortholog); cholesterol ester storage disease (ortholog); coronary artery disease (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955425 3718291 3755942 + 102017893 AGCD01025295;AGCD01025296;GBDJ01138736;XM_005385854;XM_005385855 XP_005385911;XP_005385912 MODEL 39132845 snorna SNORA73 Small nucleolar RNA SNORA73 family 8738421 protein-coding Resp18 regulated endocrine specific protein 18 INVOLVED IN in utero embryonic development (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); autosomal recessive distal hereditary motor neuronopathy 5 (ortholog); cerebrotendinous xanthomatosis (ortholog); FOUND IN perikaryon (ortholog); rough endoplasmic reticulum lumen (ortholog); secretory granule (ortholog) NW_004955453 14106430 14111920 + 102008493 AGCD01044858;GBDI01385707;XM_005395532 XP_005395589 MODEL 8855709 protein-coding LOC102023438 olfactory receptor 6C2-like NW_004955458 2992715 2993662 + 102023438 AGCD01047264;XM_005397506 XP_005397563 MODEL 8961284 protein-coding Tle6 TLE family member 6, subcortical maternal complex member ENCODES a protein that exhibits structural constituent of cytoplasmic lattice (ortholog); INVOLVED IN actin filament organization (ortholog); embryonic process involved in female pregnancy (ortholog); endoplasmic reticulum localization (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Oocyte/Zygote/Embryo Maturation Arrest 15 (ortholog); progressive myoclonus epilepsy 9 (ortholog); FOUND IN cell cortex (ortholog); cytoplasm (ortholog); cytoplasmic lattice (ortholog) NW_004955495 5367237 5369601 - 102011885 AGCD01062002;GBDF01076043;XM_013505057 XP_013360511 MODEL 8852981 protein-coding LOC102018771 ETS translocation variant 3 NW_004955545 3146221 3160533 - 102018771 AGCD01071933;GBDK01237418;XM_005411739;XM_005411741 XP_005411796;XP_005411798 MODEL 8789252 protein-coding LOC102010431 olfactory receptor 13H1-like NW_004955580 1266092 1267030 - 102010431 AGCD01075652;XM_005414225 XP_005414282 MODEL 9052661 pseudo LOC102008949 tubulin alpha-1A chain-like NW_004955420 26771001 26771926 - 102008949 AGCD01021431 MODEL 8940184 ncrna LOC102010796 uncharacterized LOC102010796 NW_004955473 4935115 4942810 - 102010796 AGCD01053962;GBDK01418846;XR_001237109;XR_263580 MODEL 8881412 protein-coding Lipc lipase C, hepatic type ENCODES a protein that exhibits acetylesterase activity (ortholog); acyltransferase activity (ortholog); apolipoprotein binding (ortholog); INVOLVED IN aflatoxin metabolic process (ortholog); cellular response to cAMP (ortholog); cellular response to hormone stimulus (ortholog); PARTICIPATES IN D-glycericacidemia pathway; familial lipoprotein lipase deficiency pathway; glycerol kinase deficiency pathway; ASSOCIATED WITH Albuminuria (ortholog); Bloom syndrome (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cell surface (ortholog); early endosome (ortholog); extracellular space (ortholog) NW_004955450 15947869 16062449 - 102016439 AGCD01042826;AGCD01042827;AGCD01042828;AGCD01042829;GBCE01092534;XM_005393838;XM_005393839;XM_005393840 XP_005393895;XP_005393896;XP_005393897 MODEL 9057895 pseudo LOC102008535 plasma membrane calcium-transporting ATPase 1-like NW_004955483 8088963 8090785 + 102008535 AGCD01057826 MODEL 8879327 pseudo LOC102003785 translocation protein SEC62-like NW_004955426 65589 86951 + 102003785 AGCD01025993 MODEL 8959674 protein-coding Wdtc1 WD and tetratricopeptide repeats 1 ENCODES a protein that exhibits enzyme inhibitor activity (ortholog); histone binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); glucose metabolic process (ortholog); in utero embryonic development (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955452 6519628 6581333 + 102028819 AGCD01044114;AGCD01044115;AGCD01044116;AGCD01044117;GBDF01050605;XM_005394896;XM_005394898 XP_005394953;XP_005394955 MODEL 9026560 protein-coding LOC102018772 keratin, type II cytoskeletal 6C-like NW_004955547 2822399 2871054 - 102018772 AGCD01072294;AGCD01072295;AGCD01072296;AGCD01072297;AGCD01072298;AGCD01072299;GBDI01355999;XM_013508446 XP_013363900 MODEL 8910354 ncrna LOC102008951 uncharacterized LOC102008951 NW_004955420 29155972 29159064 - 102008951 AGCD01021493;GBCB01016080;XR_260771 MODEL 8752424 protein-coding Pxn paxillin ENCODES a protein that exhibits beta-catenin binding (ortholog); BH4 domain binding (ortholog); integrin binding (ortholog); INVOLVED IN branching morphogenesis of an epithelial tube (ortholog); cell migration (ortholog); cellular response to reactive oxygen species (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; insulin-like growth factor signaling pathway; integrin mediated signaling pathway; ASSOCIATED WITH Experimental Melanoma (ortholog); lung non-small cell carcinoma (ortholog); Neoplasm Metastasis (ortholog); FOUND IN cell leading edge (ortholog); cell-cell junction (ortholog); cytosol (ortholog) NW_004955455 11387140 11401178 + 102013905 AGCD01046003;GBDK01059902;XM_005396515;XM_013520331;XM_013520332 XP_005396572;XP_013375785;XP_013375786 MODEL 10207227 ncrna LOC106147078 uncharacterized LOC106147078 NW_004955408 33677059 33867164 + 106147078 AGCD01008879;AGCD01008880;AGCD01008881;AGCD01008882;AGCD01008883;AGCD01008884;AGCD01008885;AGCD01008886;AGCD01008887;GBDF01238133;XR_001231808 MODEL 8873619 pseudo LOC102008537 60S ribosomal protein L39 pseudogene NW_004955420 7015115 7015474 - 102008537 AGCD01020693;XM_005383030 MODEL 9061970 protein-coding Slc2a9 solute carrier family 2 member 9 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); fructose transmembrane transporter activity (ortholog); urate transmembrane transporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); fructose transmembrane transport (ortholog); urate metabolic process (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); attention deficit hyperactivity disorder (ortholog); Attention Deficit-Hyperactivity Disorder 7 (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955514 5479585 5625328 - 102029652 AGCD01067155;AGCD01067156;AGCD01067157;GBDI01170943;XM_005408843 XP_005408900 MODEL 8838388 pseudo LOC102017642 thioredoxin pseudogene NW_004955465 2024398 2024702 - 102017642 AGCD01050347 MODEL 9065673 protein-coding Ptchd1 patched domain containing 1 INVOLVED IN cognition (ortholog); excitatory chemical synaptic transmission (ortholog); inhibitory chemical synaptic transmission (ortholog); ASSOCIATED WITH amenorrhea (ortholog); attention deficit hyperactivity disorder (ortholog); autism spectrum disorder (ortholog); FOUND IN dendritic spine (ortholog); plasma membrane (ortholog); synapse (ortholog) NW_004955509 3716086 3767541 + 102013108 AGCD01066032;AGCD01066033;GBCE01090342;XM_005407829 XP_005407886 MODEL 8840746 protein-coding Plcz1 phospholipase C zeta 1 ENCODES a protein that exhibits phosphatidylinositol phospholipase C activity (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN calcium ion transport (ortholog); egg activation (ortholog); positive regulation of cytosolic calcium ion concentration (ortholog); ASSOCIATED WITH spermatogenic failure 17 (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955413 14791750 14846327 - 102011640 AGCD01014051;AGCD01014052;AGCD01014053;GBDF01083196;XM_005379040;XM_013511282;XR_001232940;XR_260080 XP_005379097;XP_013366736 MODEL 8959389 pseudo LOC102015743 mitochondrial dynamics protein MID51 pseudogene NW_004955424 14961240 14963238 + 102015743 AGCD01024669 MODEL 8705649 protein-coding Trappc10 trafficking protein particle complex subunit 10 INVOLVED IN intra-Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH agnathia-otocephaly complex (ortholog); Arsenic Poisoning (ortholog); autistic disorder (ortholog); FOUND IN TRAPP complex (ortholog) NW_004955407 41271526 41347850 - 102029827 AGCD01007863;AGCD01007864;GBCQ01072221;GBDF01089628;XM_005375874 XP_005375931 MODEL 8932588 protein-coding Sos2 SOS Ras/Rho guanine nucleotide exchange factor 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN B cell homeostasis (ortholog); insulin receptor signaling pathway (ortholog); lymphocyte homeostasis (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; insulin signaling pathway; interleukin-6 signaling pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Developmental Disease (ortholog); L-2-hydroxyglutaric aciduria (ortholog) NW_004955409 12542353 12622165 + 102029054 AGCD01009552;AGCD01009553;AGCD01009554;AGCD01009555;AGCD01009556;GBBH01006505;GBCE01103866;XM_013510338 XP_013365792 MODEL 39133737 snorna SNORD97 small nucleolar RNA, C/D box 97 8995918 ncrna LOC102017644 uncharacterized LOC102017644 NW_004955412 23698957 23719026 - 102017644 AGCD01013092;GBDF01274071;XR_001232911;XR_001232912;XR_001232913;XR_001232914;XR_001232915 MODEL 8741194 ncrna LOC102023440 uncharacterized LOC102023440 NW_004955409 35463032 35471967 - 102023440 AGCD01010424;GBDF01250217;XR_259804 MODEL 9045802 protein-coding Ret ret proto-oncogene ENCODES a protein that exhibits calcium ion binding (ortholog); transmembrane receptor protein tyrosine kinase activity (ortholog); INVOLVED IN cell surface receptor protein tyrosine kinase signaling pathway (ortholog); cellular response to retinoic acid (ortholog); embryonic epithelial tube formation (ortholog); ASSOCIATED WITH appendicitis (ortholog); Brain Injuries (ortholog); brain ischemia (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); early endosome (ortholog) NW_004955546 1221995 1252147 + 102005303 AGCD01072043;AGCD01072044;GBDF01009147;XM_005411762 XP_005411819 MODEL 8723546 protein-coding Tspan16 tetraspanin 16 ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog) NW_004955495 2234098 2249884 + 102018409 AGCD01061756;AGCD01061757;AGCD01061758;AGCD01061759;GBDF01001019;GBDF01058236;XM_005405647;XM_005405648 XP_005405704;XP_005405705 MODEL 8739026 protein-coding Rbbp9 RB binding protein 9, serine hydrolase ENCODES a protein that exhibits serine hydrolase activity (ortholog); INVOLVED IN positive regulation of gene expression (ortholog); regulation of cell population proliferation (ortholog); response to nematode (ortholog); ASSOCIATED WITH congenital dyserythropoietic anemia type II (ortholog); familial hyperinsulinemic hypoglycemia 1 (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955415 27037875 27044558 - 102017450 AGCD01016622;GBCQ01007300;XM_005380932 XP_005380989 MODEL 39133387 snrna U4 U4 spliceosomal RNA 8800706 protein-coding Prr11 proline rich 11 INVOLVED IN regulation of cell cycle (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Joubert syndrome 1 (ortholog); mulibrey nanism (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955451 3813617 3839521 - 102016335 AGCD01043074;AGCD01043075;GBDJ01400550;XM_005393991;XM_013519224;XM_013519225 XP_005394048;XP_013374678;XP_013374679 MODEL 8941921 protein-coding Pilra paired immunoglobin like type 2 receptor alpha INVOLVED IN signal transduction (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955573 553631 560301 - 102024516 AGCD01074991;GBDF01110644;GBDK01074242;XM_013509477 XP_013364931 MODEL 9021890 pseudo LOC102007053 protein kinase C iota type pseudogene NW_004955530 521029 523694 + 102007053 AGCD01069854;XM_005410110 MODEL 8860199 protein-coding Pgbd5 piggyBac transposable element derived 5 ENCODES a protein that exhibits transposase activity (ortholog); INVOLVED IN non-replicative DNA transposition (ortholog); ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); congenital disorder of glycosylation type IIq (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955492 8032220 8090898 + 102013621 AGCD01060808;GBBH01204516;GBCB01089036;XM_005404993 XP_005405050 MODEL 8792107 protein-coding Smim24 small integral membrane protein 24 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); RASopathy (ortholog) NW_004955495 5083596 5086321 + 102020683 AGCD01061973;GBDJ01166045;XM_005405837 XP_005405894 MODEL 8830862 protein-coding Eola1 endothelium and lymphocyte associated ASCH domain 1 INVOLVED IN regulation of gene expression (ortholog); regulation of interleukin-6 production (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN mitochondrion (ortholog) NW_004955498 1911103 1916645 + 102021893 AGCD01062753;GBDJ01129367;XM_005406399 XP_005406456 MODEL 8930669 protein-coding Pdk2 pyruvate dehydrogenase kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to nutrient (ortholog); cellular response to reactive oxygen species (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH cardiomyopathy (ortholog); hereditary breast ovarian cancer syndrome (ortholog); osteogenesis imperfecta type 1 (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955451 11547660 11559266 - 102016337 AGCD01043359;GBBH01142102;XM_005394182 XP_005394239 MODEL 8824623 protein-coding Pxt1 peroxisomal testis enriched protein 1 INVOLVED IN positive regulation of apoptotic process (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN nucleus (ortholog); peroxisome (ortholog) NW_004955437 4096740 4105794 - 102009986 AGCD01034360;GBDF01177457;XM_005389592;XM_005389593 XP_005389649;XP_005389650 MODEL 8804036 protein-coding Sez6l2 seizure related 6 homolog like 2 INVOLVED IN activation of protein kinase C activity (ortholog); adult locomotory behavior (ortholog); cerebellar Purkinje cell layer development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN endoplasmic reticulum (ortholog); neuronal cell body (ortholog) NW_004955493 7059865 7080524 + 102004291 AGCD01061154;GBCE01082309;XM_005405222;XM_005405223;XM_013504789;XM_013504790 XP_005405279;XP_005405280;XP_013360243;XP_013360244 MODEL 8885737 protein-coding Slc30a1 solute carrier family 30 member 1 ENCODES a protein that exhibits calcium channel inhibitor activity (ortholog); zinc ion transmembrane transporter activity (ortholog); zinc:proton antiporter activity (ortholog); INVOLVED IN cadmium ion transmembrane transport (ortholog); calcium ion import (ortholog); defense response to bacterium (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN basolateral plasma membrane (ortholog); cytoplasm (ortholog); cytoplasmic vesicle membrane (ortholog) NW_004955406 5662312 5668331 + 102014742 AGCD01005735;GBDF01051945;XM_013520219 XP_013375673 MODEL 8699639 protein-coding LOC102008539 sodium- and chloride-dependent transporter XTRP3A-like NW_004955420 26201378 26228005 + 102008539 AGCD01021392;AGCD01021393;AGCD01021394;AGCD01021395;GBCQ01102604;XM_013513346 XP_013368800 MODEL 9013244 pseudo LOC102008140 28S ribosomal protein S36, mitochondrial pseudogene NW_004955434 3982156 3983215 - 102008140 AGCD01032152 MODEL 9010718 protein-coding C1qtnf1 C1q and TNF related 1 ENCODES a protein that exhibits collagen binding (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of platelet activation (ortholog); negative regulation of platelet aggregation (ortholog); positive regulation of aldosterone secretion (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Idiopathic Generalized Epilepsy (ortholog); pityriasis rubra pilaris (ortholog); FOUND IN extracellular space (ortholog); plasma membrane (ortholog) NW_004955506 3680352 3700729 - 102026658 AGCD01065318;AGCD01065319;GBBH01050432;XM_005407346;XM_005407347;XM_013506098 XP_005407403;XP_005407404;XP_013361552 MODEL 8911397 protein-coding LOC102015749 uncharacterized LOC102015749 NW_004955506 1936669 1939131 + 102015749 AGCD01065277;GBDF01087684;XM_013505960 XP_013361414 MODEL 39131335 protein-coding SMIM27 small integral membrane protein 27 8913481 protein-coding Pcbp3 poly(rC) binding protein 3 ENCODES a protein that exhibits C-rich single-stranded DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN iron homeostasis pathway; ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); cataract 9 multiple types (ortholog) NW_004955407 42395149 42447312 + 102015175 AGCD01007891;AGCD01007892;GBDF01097466;XM_013505654;XM_013505656;XM_013505659;XM_013505661;XM_013505669;XM_013505674;XM_013505683 XP_013361108;XP_013361110;XP_013361113;XP_013361115;XP_013361123;XP_013361128;XP_013361137 MODEL 8769765 pseudo LOC102013205 DCN1-like protein 1 pseudogene NW_004955523 1164391 1165382 - 102013205 AGCD01068503 MODEL 9026912 protein-coding Ndufa7 NADH:ubiquinone oxidoreductase subunit A7 ASSOCIATED WITH autistic disorder (ortholog); mucolipidosis type IV (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955563 1074182 1080928 + 102015466 AGCD01074111;AGCD01074112;GBDK01044927;XM_005413133 XP_005413190 MODEL 8757580 protein-coding Pdk3 pyruvate dehydrogenase kinase 3 ENCODES a protein that exhibits ATP binding (ortholog); protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to fatty acid (ortholog); hypoxia-inducible factor-1alpha signaling pathway (ortholog); peptidyl-serine phosphorylation (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease X-linked dominant 6 (ortholog); FOUND IN mitochondrion (ortholog); nucleolus (ortholog) NW_004955509 4809422 4888802 + 102018120 AGCD01066089;AGCD01066090;GBCE01085761;XM_005407844;XM_005407845;XM_005407846;XM_005407847;XM_005407848 XP_005407901;XP_005407902;XP_005407903;XP_005407904;XP_005407905 MODEL 8897914 ncrna LOC102006684 uncharacterized LOC102006684 NW_004955497 7496522 7500425 - 102006684 AGCD01062678;GBDJ01389347;XR_001231425;XR_264211 MODEL 8884434 protein-coding Retn resistin INVOLVED IN fat cell differentiation (ortholog); negative regulation of feeding behavior (ortholog); positive regulation of collagen metabolic process (ortholog); ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Albuminuria (ortholog); chronic kidney disease (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog) NW_004955563 1607814 1609273 - 102028141 AGCD01074153;GBDK01016678;XM_005413172 XP_005413229 MODEL 8736878 protein-coding LOC102015752 olfactory receptor 8H1-like NW_004955511 1182402 1183361 + 102015752 AGCD01066359;XM_005408226 XP_005408283 MODEL 9037805 pseudo LOC102018774 epidermal growth factor receptor substrate 15-like NW_004955550 90761 93344 - 102018774 AGCD01072481 MODEL 39132850 snorna SNORA73 Small nucleolar RNA SNORA73 family 8985733 protein-coding Rbck1 RANBP2-type and C3HC4-type zinc finger containing 1 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); identical protein binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN defense response to bacterium (ortholog); negative regulation of necroptotic process (ortholog); negative regulation of NF-kappaB transcription factor activity (ortholog); PARTICIPATES IN nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 1 (ortholog); Cardiomegaly (ortholog); genetic disease (ortholog); FOUND IN LUBAC complex (ortholog) NW_004955597 272352 289348 + 102021192 AGCD01076553;AGCD01076554;GBBH01033064;XM_005414720;XM_005414721;XM_005414722 XP_005414777;XP_005414778;XP_005414779 MODEL 10367736 pseudo LOC106147079 high mobility group protein B1-like NW_004955516 4767150 4767759 + 106147079 AGCD01067536 MODEL 8888891 protein-coding Prr12 proline rich 12 ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 12 (ortholog); genetic disease (ortholog) NW_004955559 1253216 1279414 - 102011703 AGCD01073638;AGCD01073639;GBBH01228692;XM_005412863;XM_013508984 XP_005412920;XP_013364438 MODEL 8952691 protein-coding Tle7 TLE family member 7 NW_004955484 4138324 4150092 - 102009184 AGCD01058202;AGCD01058203;GBDF01074192;GBDJ01410386;NM_001370855;XM_013503981 NP_001357784;XP_013359435 VALIDATED 8803359 protein-coding Slc6a19 solute carrier family 6 member 19 ENCODES a protein that exhibits neutral L-amino acid transmembrane transporter activity (ortholog); INVOLVED IN neutral amino acid transport (ortholog); response to nutrient (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 2 (ortholog); dopamine transporter deficiency syndrome (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog) NW_004955504 617683 633594 + 102004299 AGCD01064824;GBCQ01005442;XM_005407040;XM_005407041 XP_005407097;XP_005407098 MODEL 8810968 protein-coding Rbfa ribosome binding factor A ASSOCIATED WITH Burn-McKeown syndrome (ortholog); chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog); FOUND IN mitochondrion (ortholog) NW_004955402 63213097 63224252 + 102028703 AGCD01001665;GBDF01126328;XM_005373124 XP_005373181 MODEL 8921307 ncrna LOC102008548 uncharacterized LOC102008548 NW_004955423 309053 319789 + 102008548 AGCD01023411;GBDF01260789;XR_260936 MODEL 8842261 pseudo LOC102008143 ras-related protein Rab-28 pseudogene NW_004955435 20586269 20586938 - 102008143 AGCD01033457 MODEL 8756295 protein-coding Rad50 RAD50 double strand break repair protein ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); ATP hydrolysis activity (ortholog); DNA binding (ortholog); INVOLVED IN chromosome organization (ortholog); chromosome organization involved in meiotic cell cycle (ortholog); DNA damage response (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; homologous recombination pathway of double-strand break repair; ASSOCIATED WITH asthma (ortholog); breast cancer (ortholog); Breast Cancer, Familial (ortholog); FOUND IN BRCA1-C complex (ortholog); chromatin (ortholog); chromosome, telomeric region (ortholog) NW_004955408 3953801 4035494 + 102015290 AGCD01008084;AGCD01008085;AGCD01008086;GBCQ01175938;GBDF01188235;XM_013508334;XM_013508338 XP_013363788;XP_013363792 MODEL 8788169 protein-coding Sf1 splicing factor 1 ENCODES a protein that exhibits identical protein binding (ortholog); RNA binding (ortholog); INVOLVED IN Leydig cell differentiation (ortholog); male sex determination (ortholog); negative regulation of smooth muscle cell proliferation (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog); intellectual disability (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); spliceosomal complex (ortholog) NW_004955422 20391340 20406555 + 102028550 AGCD01023078;AGCD01023079;GBCE01029052;GBDI01001163;XM_013514043;XM_013514044;XM_013514045;XM_013514046 XP_013369497;XP_013369498;XP_013369499;XP_013369500 MODEL 9036899 protein-coding Pacrg parkin coregulated ENCODES a protein that exhibits actin binding (ortholog); alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN flagellated sperm motility (ortholog); protein localization (ortholog); spermatid development (ortholog); ASSOCIATED WITH early-onset Parkinson's disease (ortholog); juvenile-onset Parkinson's disease (ortholog); lung adenocarcinoma (ortholog); FOUND IN axonemal B tubule inner sheath (ortholog); axonemal microtubule (ortholog); cell body (ortholog) NW_004955439 18152719 18664026 - 102009221 AGCD01036049;AGCD01036050;AGCD01036051;AGCD01036052;AGCD01036053;AGCD01036054;AGCD01036055;AGCD01036056;AGCD01036057;AGCD01036058;AGCD01036059;AGCD01036060;AGCD01036061;AGCD01036062;GBDI01262328;XM_005390691;XM_005390692;XM_005390693 XP_005390748;XP_005390749;XP_005390750 MODEL 8881396 protein-coding Tspan17 tetraspanin 17 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN establishment of protein localization to organelle (ortholog); protein maturation (ortholog); regulation of membrane protein ectodomain proteolysis (ortholog); ASSOCIATED WITH Chromosome 5, Trisomy 5q (ortholog); Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog) NW_004955408 28914392 28924352 + 102016239 AGCD01008734;GBCQ01039281;XM_005376397;XM_013509645;XM_013509648;XM_013509649 XP_005376454;XP_013365099;XP_013365102;XP_013365103 MODEL 8740323 pseudo LOC102005596 TCDD-inducible poly [ADP-ribose] polymerase pseudogene NW_004955483 1094919 1097507 - 102005596 AGCD01057640 MODEL 9059073 trna Trnai-uau transfer RNA isoleucine (anticodon UAU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955468;NW_004955465;NW_004955441;NW_004955483 149799;13289424;10151035;194221 149891;13289517;10151126;194314 +;+;+;- 101978796 AGCD01037076;AGCD01050597;AGCD01051684;AGCD01057602 MODEL 8956351 protein-coding Ssbp3 single stranded DNA binding protein 3 ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN head development (ortholog); head morphogenesis (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN protein-containing complex (ortholog); transcription regulator complex (ortholog) NW_004955464 4901150 5049341 + 102030505 AGCD01049997;AGCD01049998;GBCE01117941;GBCQ01040067;XM_005398528;XM_013521664 XP_005398585;XP_013377118 MODEL 8785185 protein-coding Pdk4 pyruvate dehydrogenase kinase 4 ENCODES a protein that exhibits ATP binding (ortholog); protein kinase activity (ortholog); pyruvate dehydrogenase (acetyl-transferring) kinase activity (ortholog); INVOLVED IN cellular response to fatty acid (ortholog); cellular response to starvation (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Experimental Diabetes Mellitus (ortholog); hepatocellular carcinoma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955432 12169548 12182064 - 102018631 AGCD01030969;GBDJ01083740;XM_005388066 XP_005388123 MODEL 8921146 protein-coding Pld1 phospholipase D1 ENCODES a protein that exhibits phospholipase D activity (ortholog); INVOLVED IN cellular response to nutrient (ortholog); defense response to Gram-positive bacterium (ortholog); phosphatidic acid biosynthetic process (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); developmental cardiac valvular defect (ortholog); Experimental Seizures (ortholog); FOUND IN apical plasma membrane (ortholog); cholinergic synapse (ortholog); endocytic vesicle (ortholog) NW_004955420 1697716 1892741 - 102026748 AGCD01020576;AGCD01020577;AGCD01020578;AGCD01020579;AGCD01020580;AGCD01020581;AGCD01020582;GBDI01326771;XM_005382998;XM_005382999;XM_005383000;XM_005383002;XM_013513558;XM_013513559;XM_013513560;XM_013513561 XP_005383055;XP_005383056;XP_005383057;XP_005383059;XP_013369012;XP_013369013;XP_013369014;XP_013369015 MODEL 9013400 protein-coding Pgc progastricsin ENCODES a protein that exhibits aspartic-type endopeptidase activity (ortholog); INVOLVED IN positive regulation of antibacterial peptide production (ortholog); ASSOCIATED WITH infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN extracellular space (ortholog) NW_004955437 8142523 8153044 - 102015240 AGCD01034479;GBDJ01263197;XM_005389695 XP_005389752 MODEL 8752348 ncrna LOC102010432 uncharacterized LOC102010432 NW_004955449 7929705 7955196 - 102010432 AGCD01042005;XR_262495 MODEL 9013478 protein-coding Eomes eomesodermin ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN anatomical structure morphogenesis (ortholog); astrocyte differentiation (ortholog); blastocyst development (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; ASSOCIATED WITH anxiety disorder (ortholog); autoimmune disease of the nervous system (ortholog); Colonic Neoplasms (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955430 19280460 19287060 - 102018517 AGCD01029712;GBDJ01152655;XM_005387507 XP_005387564 MODEL 8881253 pseudo LOC102010800 splicing regulatory glutamine/lysine-rich protein 1-like NW_004955479 4446160 4449021 - 102010800 AGCD01056323 MODEL 8751440 protein-coding Runx2 RUNX family transcription factor 2 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); chromatin binding (ortholog); chromatin DNA binding (ortholog); INVOLVED IN BMP signaling pathway (ortholog); bone mineralization (ortholog); cell maturation (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Bone Fractures (ortholog); breast cancer (ortholog); Breast Neoplasms (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955437 10598145 10885858 + 102025170 AGCD01034563;AGCD01034564;AGCD01034565;AGCD01034566;AGCD01034567;AGCD01034568;GBCE01001577;XM_005389822;XM_005389823;XM_005389831;XM_013516854;XM_013516855;XM_013516856;XM_013516857 XP_005389879;XP_005389880;XP_005389888;XP_013372308;XP_013372309;XP_013372310;XP_013372311 MODEL 8778321 pseudo LOC102011611 spliceosome-associated protein CWC15 homolog pseudogene NW_004955403 25832090 25832764 + 102011611 AGCD01002295 MODEL 9062973 ncrna LOC102012008 uncharacterized LOC102012008 NW_004955506 888972 890923 + 102012008 AGCD01065239;GBDF01266491;XR_264312 MODEL 8912217 ncrna LOC102021735 uncharacterized LOC102021735 NW_004955408 6117602 6136953 + 102021735 AGCD01008164;GBDF01095616;XR_001232266 MODEL 8876868 protein-coding C1qtnf12 C1q and TNF related 12 ENCODES a protein that exhibits hormone activity (ortholog); INVOLVED IN D-glucose import (ortholog); establishment of localization in cell (ortholog); gluconeogenesis (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog) NW_004955486 9541466 9545231 + 102028093 AGCD01059190;GBDF01279918;XM_005404246 XP_005404303 MODEL 8801184 pseudo LOC102008958 AN1-type zinc finger protein 3-like NW_004955497 478857 481296 + 102008958 AGCD01062416 MODEL 9044256 protein-coding Slc6a2 solute carrier family 6 member 2 ENCODES a protein that exhibits actin binding (ortholog); alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN monoamine transport (ortholog); neurotransmitter reuptake (ortholog); neurotransmitter transport (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH alcohol dependence (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); depressive disorder (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog); presynaptic membrane (ortholog) NW_004955433 13170986 13216270 + 102006271 AGCD01031679;AGCD01031680;AGCD01031681;GBDK01249946;XM_005388320;XM_005388321;XM_005388322 XP_005388377;XP_005388378;XP_005388379 MODEL 9051610 protein-coding Pcbp4 poly(rC) binding protein 4 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); RNA binding (ortholog); INVOLVED IN DNA damage response, signal transduction by p53 class mediator (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); negative regulation of DNA damage response, signal transduction by p53 class mediator (ortholog); PARTICIPATES IN iron homeostasis pathway; FOUND IN cytosol (ortholog) NW_004955532 3604720 3615112 - 102024048 AGCD01070289;AGCD01070290;GBDJ01187213;XM_005410335;XM_005410336;XM_005410337;XM_005410339 XP_005410392;XP_005410393;XP_005410394;XP_005410396 MODEL 39133389 snrna U4 U4 spliceosomal RNA 8735859 ncrna LOC102019247 uncharacterized LOC102019247 NW_004955458 10688241 10689288 + 102019247 AGCD01047701;GBCQ01143269;XR_262993 MODEL 8777213 protein-coding Tlk1 tousled like kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN intracellular protein transport (ortholog); intracellular signal transduction (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Neoplasm Recurrence, Local (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955449 3694624 3840468 + 102022033 AGCD01041863;AGCD01041864;AGCD01041865;AGCD01041866;AGCD01041867;AGCD01041868;GBDK01190119;XM_005393240 XP_005393297 MODEL 10186628 ncrna LOC106149913 uncharacterized LOC106149913 NW_004955457 2828070 2833723 + 106149913 AGCD01046751;XR_001236378 MODEL 8933336 protein-coding LOC102018778 tubulin alpha-3 chain NW_004955442 19231448 19233877 - 102018778 AGCD01038042;AGCD01038043;GBBH01211441;XM_005391874 XP_005391931 MODEL 8944585 protein-coding Retreg1 reticulophagy regulator 1 ENCODES a protein that exhibits endoplasmic reticulum-autophagosome adaptor activity (ortholog); INVOLVED IN autophagy (ortholog); collagen catabolic process (ortholog); endoplasmic reticulum organization (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); genetic disease (ortholog); hereditary sensory and autonomic neuropathy type 2 (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955426 5574207 5688236 - 102012106 AGCD01026130;AGCD01026131;AGCD01026132;AGCD01026133;AGCD01026134;AGCD01026135;AGCD01026136;AGCD01026137;AGCD01026138;GBCB01023016;XM_005386135;XM_005386136 XP_005386192;XP_005386193 MODEL 8762758 pseudo LOC102007056 protein CDV3 pseudogene NW_004955437 733515 734520 - 102007056 AGCD01034158 MODEL 9037256 protein-coding Rad51 RAD51 recombinase ENCODES a protein that exhibits ATP binding (ortholog); chromatin binding (ortholog); DNA polymerase binding (ortholog); INVOLVED IN cellular response to alkaloid (ortholog); cellular response to camptothecin (ortholog); cellular response to cisplatin (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH Bloom syndrome (ortholog); breast cancer (ortholog); Breast Cancer, Familial (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); chromosome, telomeric region (ortholog) NW_004955416 7566715 7590628 + 102024794 AGCD01016991;AGCD01016992;AGCD01016993;AGCD01016994;GBDF01087352;XM_005381253 XP_005381310 MODEL 8913704 protein-coding LOC102024476 melanoma-associated antigen 10-like NW_004955498 4679377 4680138 + 102024476 AGCD01063015;XM_005406485 XP_005406542 MODEL 8864750 protein-coding Trappc11 trafficking protein particle complex subunit 11 INVOLVED IN constitutive secretory pathway (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); Golgi organization (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); Autosomal Recessive Limb-Girdle Muscular Dystrophy Type 23 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2S (ortholog); FOUND IN Golgi apparatus (ortholog); TRAPP complex (ortholog) NW_004955403 25168212 25211344 - 102008808 AGCD01002283;GBCQ01149377;XM_005373500;XR_001233561 XP_005373557 MODEL 8704538 protein-coding Pxylp1 2-phosphoxylose phosphatase 1 ENCODES a protein that exhibits phosphatase activity (ortholog); INVOLVED IN chondroitin sulfate proteoglycan biosynthetic process (ortholog); glycosaminoglycan biosynthetic process (ortholog); positive regulation of heparan sulfate proteoglycan biosynthetic process (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955508 4390647 4449782 - 102020038 AGCD01065866;GBDJ01388065;XM_005407772;XM_005407773;XM_013506265;XM_013506266;XM_013506267;XM_013506268;XM_013506269;XM_013506270;XM_013506271;XM_013506272;XM_013506273;XM_013506274;XM_013506275;XM_013506276;XM_013506277 XP_005407829;XP_005407830;XP_013361719;XP_013361720;XP_013361721;XP_013361722;XP_013361723;XP_013361724;XP_013361725;XP_013361726;XP_013361727;XP_013361728;XP_013361729;XP_013361730;XP_013361731 MODEL 8779976 ncrna LOC102012811 uncharacterized LOC102012811 NW_004955559 2195047 2205058 - 102012811 AGCD01073700;AGCD01073701;GBBH01056100;XR_265004 MODEL 8786017 pseudo LOC102024477 serine/threonine-protein kinase Nek2 pseudogene NW_004955424 14868186 14869112 + 102024477 AGCD01024661 MODEL 8876489 protein-coding LOC102010434 small proline-rich protein 3-like NW_004955592 374906 377181 - 102010434 AGCD01076311;GBDI01016407;XM_005414613;XM_005414614 XP_005414670;XP_005414671 MODEL 8971957 protein-coding Prr13 proline rich 13 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); lung non-small cell carcinoma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955458 730805 735528 + 102021208 AGCD01047151;AGCD01047152;GBDF01003931;XM_005397178 XP_005397235 MODEL 8958203 protein-coding Lipe lipase E, hormone sensitive type ENCODES a protein that exhibits diacylglycerol lipase activity (ortholog); hydrolase activity, acting on ester bonds (ortholog); monoacylglycerol lipase activity (ortholog); INVOLVED IN cellular response to cold (ortholog); diacylglycerol catabolic process (ortholog); ether lipid metabolic process (ortholog); ASSOCIATED WITH arteriosclerosis (ortholog); Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); FOUND IN cytosol (ortholog); extracellular space (ortholog); lipid droplet (ortholog) NW_004955555 511085 531165 + 102019855 AGCD01073035;GBDF01048257;XM_005412353;XM_013508677;XM_013508678;XM_013508679 XP_005412410;XP_013364131;XP_013364132;XP_013364133 MODEL 8736095 protein-coding Ripor1 RHO family interacting cell polarization regulator 1 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); INVOLVED IN cellular response to chemokine (ortholog); cellular response to starvation (ortholog); establishment of Golgi localization (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN cell leading edge (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955484 9110208 9119678 - 102028755 AGCD01058406;GBDI01045086;XM_005403641 XP_005403698 MODEL 8954543 protein-coding Pld2 phospholipase D2 ENCODES a protein that exhibits phospholipase D activity (ortholog); protein kinase C binding (ortholog); INVOLVED IN cellular response to phorbol 13-acetate 12-myristate (ortholog); G protein-coupled receptor internalization (ortholog); neuron projection development (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; glycerophospholipid metabolic pathway; mTOR signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); congestive heart failure (ortholog); Experimental Seizures (ortholog); FOUND IN brush border membrane (ortholog); caveola (ortholog); lamellipodium (ortholog) NW_004955467 10239177 10250516 + 102016147 AGCD01051558;GBBH01166668;XM_005399602;XM_013522221;XM_013522222 XP_005399659;XP_013377675;XP_013377676 MODEL 8716117 pseudo LOC102008549 nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 pseudogene NW_004955495 3015938 3016703 + 102008549 AGCD01061815 MODEL 8805324 pseudo LOC102021737 eukaryotic initiation factor 4A-I-like NW_004955408 16045127 16045682 + 102021737 AGCD01008432 MODEL 8884224 protein-coding Poc5 POC5 centriolar protein INVOLVED IN centriole elongation (ortholog); negative regulation of centriole elongation (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); Neurodevelopmental Disorders (ortholog); optic atrophy (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog) NW_004955425 25055259 25092101 + 102022720 AGCD01025908;AGCD01025909;GBCB01111720;GBDF01187988;XM_013514890;XM_013514891;XM_013514892 XP_013370344;XP_013370345;XP_013370346 MODEL 8729342 protein-coding Pacrgl parkin coregulated like NW_004955480 3911746 3925095 - 102029860 AGCD01056631;GBCQ01129150;XM_005402474;XM_013503328;XM_013503329 XP_005402531;XP_013358782;XP_013358783 MODEL 9044402 protein-coding Ndufa8 NADH:ubiquinone oxidoreductase subunit A8 ENCODES a protein that exhibits protein-containing complex binding (ortholog); ASSOCIATED WITH Nuclear Type Mitochondrial Complex I Deficiency 37 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955419 5903392 5917045 + 102011317 AGCD01019843;GBDJ01082304;XM_005382541 XP_005382598 MODEL 8902409 protein-coding Pim1 Pim-1 proto-oncogene, serine/threonine kinase ENCODES a protein that exhibits ATP binding (ortholog); manganese ion binding (ortholog); protein serine/threonine kinase activator activity (ortholog); INVOLVED IN cellular detoxification (ortholog); cellular response to type II interferon (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN granulocyte-macrophage colony-stimulating factor signaling pathway; interleukin-3 signaling pathway; interleukin-5 signaling pathway; ASSOCIATED WITH allergic contact dermatitis (ortholog); Animal Disease Models (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955437 5940825 5945367 - 102015767 AGCD01034406;GBCB01094638;GBDJ01275927;XM_013517117 XP_013372571 MODEL 8944247 protein-coding C1qtnf2 C1q and TNF related 2 ENCODES a protein that exhibits identical protein binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN positive regulation of D-glucose import (ortholog); positive regulation of fatty acid oxidation (ortholog); positive regulation of glycogen biosynthetic process (ortholog); FOUND IN extracellular space (ortholog); protein-containing complex (ortholog) NW_004955408 14219263 14266832 - 102026189 AGCD01008389;AGCD01008390;AGCD01008391;GBDI01008429;XM_005376261;XM_005376262;XM_005376264;XM_013508952;XM_013508968 XP_005376318;XP_005376319;XP_005376321;XP_013364406;XP_013364422 MODEL 8923858 pseudo LOC102005598 pre-mRNA-splicing factor SLU7 pseudogene NW_004955419 21338887 21343992 - 102005598 AGCD01020272 MODEL 8757300 protein-coding Ripor2 RHO family interacting cell polarization regulator 2 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); cellular response to chemokine (ortholog); cellular response to mechanical stimulus (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 21 (ortholog); autosomal recessive nonsyndromic deafness 104 (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog) NW_004955483 2048236 2257078 + 102006249 AGCD01057666;AGCD01057667;AGCD01057668;AGCD01057669;AGCD01057670;AGCD01057671;GBCQ01033241;XM_005403354;XM_005403355;XM_005403356;XM_005403357;XM_013503808;XM_013503809 XP_005403411;XP_005403412;XP_005403413;XP_005403414;XP_013359262;XP_013359263 MODEL 8804447 protein-coding LOC102019249 olfactory receptor 6C6-like NW_004955458 2636013 2646641 - 102019249 AGCD01047240;XM_005397498;XM_013520811 XP_005397555;XP_013376265 MODEL 8979819 ncrna LOC102011164 uncharacterized LOC102011164 NW_004955403 2029851 2035069 + 102011164 AGCD01001728;GBDF01163401;XR_001233149;XR_001233150 MODEL 8986029 protein-coding Slc30a10 solute carrier family 30 member 10 ENCODES a protein that exhibits calcium:manganese antiporter activity (ortholog); manganese ion transmembrane transporter activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN cellular response to angiotensin (ortholog); epidermal growth factor receptor signaling pathway (ortholog); intracellular copper ion homeostasis (ortholog); ASSOCIATED WITH cholestasis (ortholog); dystonia (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN early endosome (ortholog); early endosome membrane (ortholog); Golgi apparatus (ortholog) NW_004955520 3631192 3641595 + 102004311 AGCD01068107;AGCD01068108;XM_005409285 XP_005409342 MODEL 8750916 protein-coding Sost sclerostin ENCODES a protein that exhibits carbohydrate binding (ortholog); DNA-binding transcription factor binding (ortholog); molecular function inhibitor activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); canonical Wnt signaling pathway (ortholog); cellular response to parathyroid hormone stimulus (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH autosomal dominant craniodiaphyseal dysplasia (ortholog); bone development disease (ortholog); genetic disease (ortholog); FOUND IN extracellular space (ortholog); Golgi apparatus (ortholog); protein-containing complex (ortholog) NW_004955451 17054939 17058027 - 102004446 AGCD01043715;AGCD01043716;GBCE01062769;XM_005394641 XP_005394698 MODEL 8708340 protein-coding Pcca propionyl-CoA carboxylase subunit alpha ENCODES a protein that exhibits enzyme binding (ortholog); propionyl-CoA carboxylase activity (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); genetic disease (ortholog); FOUND IN catalytic complex (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955404 10317640 10719148 - 102009676 AGCD01003378;AGCD01003379;AGCD01003380;AGCD01003381;AGCD01003382;AGCD01003383;AGCD01003384;AGCD01003385;AGCD01003386;AGCD01003387;AGCD01003388;AGCD01003389;AGCD01003390;AGCD01003391;GBCE01030421;XM_005374053;XM_005374054;XM_005374058;XM_013516015 XP_005374110;XP_005374111;XP_005374115;XP_013371469 MODEL 8826508 protein-coding Pdlim1 PDZ and LIM domain 1 ENCODES a protein that exhibits actin binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); establishment or maintenance of actin cytoskeleton polarity (ortholog); fibroblast migration (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog) NW_004955507 1499223 1525924 - 102007254 AGCD01065563;GBCB01057305;XM_005407537 XP_005407594 MODEL 9042078 protein-coding Retreg2 reticulophagy regulator family member 2 ENCODES a protein that exhibits endoplasmic reticulum-autophagosome adaptor activity (ortholog); INVOLVED IN collagen catabolic process (ortholog); endoplasmic reticulum organization (ortholog); reticulophagy (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); myofibrillar myopathy 1 (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955453 14258523 14263573 - 102021839 AGCD01044860;GBCQ01006315;XM_005395587 XP_005395644 MODEL 8976681 ncrna LOC102003787 uncharacterized LOC102003787 NW_004955505 1073276 1075559 - 102003787 AGCD01064967;GBDF01042900;XR_264300 MODEL 8714818 ncrna LOC102019251 uncharacterized LOC102019251 NW_004955409 23260141 23267863 - 102019251 AGCD01010059;GBBH01137462;XR_259787 MODEL 8977712 protein-coding Smim29 small integral membrane protein 29 ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog) NW_004955437 2486918 2489003 - 102015344 AGCD01034271;GBDJ01187266;XM_005389519;XM_013517077;XM_013517078;XM_013517079;XM_013517080;XM_013517081;XM_013517082;XM_013517083 XP_005389576;XP_013372531;XP_013372532;XP_013372533;XP_013372534;XP_013372535;XP_013372536;XP_013372537 MODEL 8836659 protein-coding LOC102012009 ferritin-1 heavy chain-like NW_004955427 216126 219395 - 102012009 AGCD01026814;XM_005386602 XP_005386659 MODEL 8926148 pseudo LOC102008145 kinesin-associated protein 3 pseudogene NW_004955436 21887648 21900523 - 102008145 AGCD01034080 MODEL 8906269 protein-coding LOC102006686 granulocyte-macrophage colony-stimulating factor receptor subunit alpha NW_004955499 987241 1000290 + 102006686 AGCD01063304;AGCD01063305;GBCE01182198;XM_005406506;XM_005406507 XP_005406563;XP_005406564 MODEL 8875871 protein-coding Rbfox1 RNA binding fox-1 homolog 1 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); RNA binding (ortholog); INVOLVED IN neuromuscular process controlling balance (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); regulation of skeletal muscle cell differentiation (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); nuclear stress granule (ortholog) NW_004955442 10345261 10694602 - 102021179 AGCD01037701;AGCD01037702;AGCD01037703;AGCD01037704;AGCD01037705;AGCD01037706;AGCD01037707;AGCD01037708;GBCB01001044;XM_005391225;XM_005391226;XM_005391227;XM_005391228;XM_005391229;XM_005391230;XM_005391232;XM_005391233;XM_005391235;XM_005391236;XM_005391238;XM_013517915;XM_013517916;XM_013517917;XM_013517918;XM_013517919;XR_001235411 XP_005391282;XP_005391283;XP_005391284;XP_005391285;XP_005391286;XP_005391287;XP_005391289;XP_005391290;XP_005391292;XP_005391293;XP_005391295;XP_013373369;XP_013373370;XP_013373371;XP_013373372;XP_013373373 MODEL 8868094 protein-coding Sf3a1 splicing factor 3a subunit 1 ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN mRNA processing (ortholog); mRNA splicing, via spliceosome (ortholog); U2-type prespliceosome assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH diffuse large B-cell lymphoma (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955455 4579153 4601942 - 102020308 AGCD01045681;GBBH01034806;XM_005396258 XP_005396315 MODEL 8812233 pseudo LOC102019253 grpE protein homolog 2, mitochondrial pseudogene NW_004955460 9887916 9888533 - 102019253 AGCD01048560 MODEL 8920972 protein-coding LOC102015754 spermatogenesis-associated protein 31E1-like NW_004955515 2468254 2473814 - 102015754 AGCD01067250;GBDF01046133;XM_005408874 XP_005408931 MODEL 10368629 ncrna LOC106147080 uncharacterized LOC106147080 NW_004955408 35085904 35095761 + 106147080 AGCD01008930;GBDF01166002;XR_001231809 MODEL 39132853 snorna SNORA73 Small nucleolar RNA SNORA73 family 8828266 protein-coding Pld3 phospholipase D family member 3 ENCODES a protein that exhibits phospholipase D activity (ortholog); single-stranded DNA 5'-3' DNA exonuclease activity (ortholog); INVOLVED IN myotube differentiation (ortholog); regulation of cytokine production involved in inflammatory response (ortholog); ASSOCIATED WITH Alzheimer's disease 19 (ortholog); Carpenter syndrome 2 (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN early endosome membrane (ortholog); endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog) NW_004955578 884700 905426 - 102016536 AGCD01075500;GBCE01000031;XM_005414062;XM_005414063;XM_005414064;XM_005414066;XM_013509653;XM_013509654 XP_005414119;XP_005414120;XP_005414121;XP_005414123;XP_013365107;XP_013365108 MODEL 8781257 protein-coding Ssbp4 single stranded DNA binding protein 4 ASSOCIATED WITH Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog) NW_004955524 3101935 3109178 - 102010194 AGCD01068856;AGCD01068857;GBBH01030747;GBDK01006965;XM_005409701 XP_005409758 MODEL 8894513 protein-coding Tlk2 tousled like kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to gamma radiation (ortholog); chromosome segregation (ortholog); DNA damage response (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal dominant intellectual developmental disorder 57 (ortholog); Developmental Disease (ortholog); FOUND IN intermediate filament (ortholog); nucleus (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955478 9100863 9229448 - 102007009 AGCD01056054;AGCD01056055;GBDF01084206;GBDK01189111;XM_013503135 XP_013358589 MODEL 9011784 protein-coding Podn podocan ENCODES a protein that exhibits collagen binding (ortholog); INVOLVED IN negative regulation of cell migration (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog) NW_004955464 6070842 6084463 - 102013705 AGCD01050017;GBBH01062255;GBDK01075021;XM_013521746 XP_013377200 MODEL 8981616 protein-coding Pgcka1 PDCD10 and GCKIII kinases associated 1 INVOLVED IN regulation of cell cycle (ortholog); ASSOCIATED WITH cholestasis (ortholog); FOUND IN cell periphery (ortholog) NW_004955443 9540047 9628483 - 102010528 AGCD01038357;AGCD01038358;GBDI01328203;XM_005392012;XM_005392013 XP_005392069;XP_005392070 MODEL 8801495 protein-coding Ppfia3 PTPRF interacting protein alpha 3 INVOLVED IN neurotransmitter secretion (ortholog); regulation of short-term neuronal synaptic plasticity (ortholog); synaptic vesicle docking (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); genetic disease (ortholog); progressive familial heart block type IB (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); epididymosome (ortholog) NW_004955559 1587633 1610065 - 102022974 AGCD01073652;AGCD01073653;GBCQ01152568;XM_005412904;XM_013508999;XM_013509000;XM_013509001 XP_005412961;XP_013364453;XP_013364454;XP_013364455 MODEL 8753807 protein-coding Wee1 WEE1 G2 checkpoint kinase ENCODES a protein that exhibits protein kinase activity (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN establishment of cell polarity (ortholog); microtubule cytoskeleton organization (ortholog); negative regulation of G2/M transition of mitotic cell cycle (ortholog); ASSOCIATED WITH head and neck squamous cell carcinoma (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955414 25281725 25299242 + 102030298 AGCD01015590;AGCD01015591;GBDF01053736;GBDI01132275;XM_005380269 XP_005380326 MODEL 8932351 ncrna LOC102011165 uncharacterized LOC102011165 NW_004955403 10472232 10477715 + 102011165 AGCD01001922;GBDF01249569;XR_259169 MODEL 8810267 protein-coding C1qtnf3 C1q and TNF related 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN ERK1 and ERK2 cascade (ortholog); fat cell differentiation (ortholog); glucose homeostasis (ortholog); ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog); protein-containing complex (ortholog) NW_004955426 19588637 19606557 - 102028440 AGCD01026549;GBCB01010684;XM_005386168;XM_005386169 XP_005386225;XP_005386226 MODEL 8971667 ncrna LOC102010804 uncharacterized LOC102010804 NW_004955417 3968290 4005083 + 102010804 AGCD01017933;AGCD01017934;GBCB01092654;XR_001233425;XR_001233426;XR_001233427;XR_001233428;XR_001233429 MODEL 8916792 protein-coding Trappc12 trafficking protein particle complex subunit 12 INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); Golgi organization (ortholog); metaphase chromosome alignment (ortholog); ASSOCIATED WITH Diamond-Blackfan anemia 8 (ortholog); ENCEPHALOPATHY, PROGRESSIVE, EARLY-ONSET, WITH BRAIN ATROPHY AND SPASTICITY (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog); kinetochore (ortholog) NW_004955487 3824872 3863859 - 102019177 AGCD01059294;AGCD01059295;GBDF01120062;XM_005404378 XP_005404435 MODEL 9006577 ncrna LOC102024478 uncharacterized LOC102024478 NW_004955502 1117433 1121988 + 102024478 AGCD01064258;GBDF01193812;XR_001231533 MODEL 9038956 pseudo LOC102010436 centromere protein L-like NW_004955402 50936205 51007657 + 102010436 AGCD01001288;AGCD01001289 MODEL 8927319 ncrna LOC102008960 uncharacterized LOC102008960 NW_004955500 4757497 4758238 - 102008960 AGCD01063810;XR_264224 MODEL 8811239 ncrna LOC102010807 uncharacterized LOC102010807 NW_004955419 24809478 24811822 + 102010807 AGCD01020356;GBCE01047588;XR_001233558;XR_260656 MODEL 8775071 protein-coding Slc6a3 solute carrier family 6 member 3 ENCODES a protein that exhibits amine binding (ortholog); dopamine binding (ortholog); dopamine:sodium symporter activity (ortholog); INVOLVED IN adenohypophysis development (ortholog); cognition (ortholog); dopamine biosynthetic process (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH alcohol use disorder (ortholog); Alcohol Withdrawal Delirium (ortholog); Alcohol Withdrawal Seizures (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cell surface (ortholog) NW_004955504 721470 747553 - 102008439 AGCD01064826;AGCD01064827;AGCD01064828;GBDI01327941;XM_005407057 XP_005407114 MODEL 8762757 pseudo LOC102006688 actin-related protein 2/3 complex subunit 1A pseudogene NW_004955426 11475451 11481911 - 102006688 AGCD01026317 MODEL 8864150 pseudo LOC102017645 cyclin-G1 pseudogene NW_004955466 9212833 9213709 + 102017645 AGCD01051031 MODEL 10157374 ncrna LOC106147081 uncharacterized LOC106147081 NW_004955517 995794 1004546 + 106147081 AGCD01067588;GBCE01159944;XR_001231810;XR_001231811 MODEL 8988487 pseudo LOC102019256 R3H and coiled-coil domain-containing protein 1-like NW_004955413 632082 634543 - 102019256 AGCD01013482 MODEL 8875310 protein-coding Rad51ap1 RAD51 associated protein 1 ENCODES a protein that exhibits D-loop DNA binding (ortholog); DNA binding (ortholog); DNA secondary structure binding (ortholog); INVOLVED IN cellular response to ionizing radiation (ortholog); DNA damage response (ortholog); DNA recombination (ortholog); ASSOCIATED WITH episodic ataxia type 1 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); nucleus (ortholog) NW_004955413 2335431 2362781 + 102004153 AGCD01013544;XM_005378737;XM_013511568 XP_005378794;XP_013367022 MODEL 39132856 snorna SNORA73 Small nucleolar RNA SNORA73 family 8902892 ncrna LOC102012812 uncharacterized LOC102012812 NW_004955446 2324596 2337167 - 102012812 AGCD01039981;GBDF01040343;XR_001235685 MODEL 8803581 protein-coding LOC102011614 translation initiation factor IF-2-like NW_004955451 13182675 13184330 - 102011614 AGCD01043458;GBDK01206490;XM_005394257;XR_001235982 XP_005394314 MODEL 8918307 protein-coding Ssc4d scavenger receptor cysteine rich family member with 4 domains ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955456 14993250 15005664 - 102014535 AGCD01046659;AGCD01046660;AGCD01046661;GBDK01306473;XM_005396898 XP_005396955 MODEL 9065643 protein-coding Pdlim2 PDZ and LIM domain 2 ENCODES a protein that exhibits alpha-actinin binding (ortholog); filamin binding (ortholog); muscle alpha-actinin binding (ortholog); INVOLVED IN protein catabolic process (ortholog); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); FOUND IN cortical actin cytoskeleton (ortholog); stress fiber (ortholog) NW_004955403 46006255 46019865 + 102011939 AGCD01002847;AGCD01002848;GBDK01117944;XM_005373679;XM_005373680;XM_005373681;XM_013513882 XP_005373736;XP_005373737;XP_005373738;XP_013369336 MODEL 8778506 protein-coding Pccb propionyl-CoA carboxylase subunit beta ENCODES a protein that exhibits propionyl-CoA carboxylase activity (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN catalytic complex (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955501 2474330 2563107 - 102018112 AGCD01064082;AGCD01064083;AGCD01064084;AGCD01064085;AGCD01064086;GBCQ01010782;XM_005406779 XP_005406836 MODEL 8775706 ncrna LOC102012010 uncharacterized LOC102012010 NW_004955506 6455233 6469865 - 102012010 AGCD01065423;AGCD01065424;AGCD01065425;AGCD01065426;GBDF01119360;XR_264363 MODEL 8809253 protein-coding Prr14 proline rich 14 ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); dilated cardiomyopathy (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955493 7512420 7518310 + 102016718 AGCD01061196;GBDF01043185;XM_005405264;XM_005405266;XM_013504762 XP_005405321;XP_005405323;XP_013360216 MODEL 9065298 protein-coding Lipf lipase F, gastric type ENCODES a protein that exhibits malate dehydrogenase activity (ortholog); triacylglycerol lipase activity (ortholog); INVOLVED IN malate metabolic process (ortholog); ASSOCIATED WITH autoimmune lymphoproliferative syndrome (ortholog); PTEN hamartoma tumor syndrome (ortholog); FOUND IN extracellular region (ortholog); mitochondrion (ortholog) NW_004955425 4267977 4284996 - 102022515 AGCD01025310;GBBH01000444;XM_005385871;XM_005385872;XM_013514778 XP_005385928;XP_005385929;XP_013370232 MODEL 8766278 pseudo LOC102008146 DNA damage-regulated autophagy modulator protein 1 pseudogene NW_004955536 576531 579612 - 102008146 AGCD01070732 MODEL 8711058 ncrna LOC102007057 uncharacterized LOC102007057 NW_004955439 18083547 18090067 + 102007057 AGCD01036049;GBDK01269094;XR_001235223;XR_001235224 MODEL 8917569 protein-coding Pacs1 phosphofurin acidic cluster sorting protein 1 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN lymphocyte homeostasis (ortholog); positive regulation of protein binding (ortholog); protein localization to Golgi apparatus (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN COPI-coated vesicle (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955422 19070369 19240424 - 102018194 AGCD01022974;AGCD01022975;AGCD01022976;AGCD01022977;AGCD01022978;AGCD01022979;AGCD01022980;AGCD01022981;AGCD01022982;AGCD01022983;AGCD01022984;AGCD01022985;AGCD01022986;AGCD01022987;AGCD01022988;GBBH01092799;GBDI01083534;XM_005384427 XP_005384484 MODEL 8978744 protein-coding Sf3a2 splicing factor 3a subunit 2 INVOLVED IN mRNA processing (ortholog); mRNA splicing, via spliceosome (ortholog); positive regulation of neuron projection development (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955495 5896648 5904287 - 102016929 AGCD01062043;GBDF01008843;XM_005405914;XM_005405915 XP_005405971;XP_005405972 MODEL 8936850 pseudo LOC102005606 eukaryotic translation initiation factor 5A-2 pseudogene NW_004955422 22271814 22272275 - 102005606 AGCD01023153 MODEL 8714909 protein-coding Pdlim3 PDZ and LIM domain 3 ENCODES a protein that exhibits actinin binding (ortholog); cytoskeletal protein binding (ortholog); structural constituent of muscle (ortholog); INVOLVED IN actin filament organization (ortholog); heart development (ortholog); skeletal muscle tissue development (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); autistic disorder (ortholog); cardiomyopathy (ortholog); FOUND IN actin cytoskeleton (ortholog); cytosol (ortholog); Z disc (ortholog) NW_004955403 23546291 23579975 + 102023423 AGCD01002248;GBCB01003860;XM_005373451;XM_005373453;XM_005373455 XP_005373508;XP_005373510;XP_005373512 MODEL 8852732 protein-coding Slc30a2 solute carrier family 30 member 2 ENCODES a protein that exhibits identical protein binding (ortholog); zinc ion transmembrane transporter activity (ortholog); zinc:proton antiporter activity (ortholog); INVOLVED IN intracellular zinc ion homeostasis (ortholog); zinc export across plasma membrane (ortholog); zinc ion import into lysosome (ortholog); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); genetic disease (ortholog); Neonatal Zinc Deficiency due to Low Breast Milk Zinc (ortholog); FOUND IN cytoplasm (ortholog); endosome membrane (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955452 5507614 5515669 - 102012051 AGCD01044037;GBDI01355605;XM_005394839 XP_005394896 MODEL 8793884 protein-coding Rbfox2 RNA binding fox-1 homolog 2 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); mRNA binding (ortholog); RNA binding (ortholog); INVOLVED IN cellular response to angiotensin (ortholog); cellular response to endothelin (ortholog); cellular response to hydrogen peroxide (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); adenylosuccinase lyase deficiency (ortholog); congenital heart disease (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955413 22034048 22288430 - 102008713 AGCD01014279;AGCD01014280;AGCD01014281;AGCD01014282;AGCD01014283;AGCD01014284;AGCD01014285;AGCD01014286;AGCD01014287;AGCD01014288;GBBH01172118;GBDJ01174673;XM_005379131;XM_005379139;XM_005379140;XM_005379141;XM_013511499;XM_013511500;XM_013511501;XM_013511502;XM_013511503;XM_013511504;XM_013511505 XP_005379188;XP_005379196;XP_005379197;XP_005379198;XP_013366953;XP_013366954;XP_013366955;XP_013366956;XP_013366957;XP_013366958;XP_013366959 MODEL 8717689 protein-coding Pld4 phospholipase D family member 4 ENCODES a protein that exhibits phospholipase D activity (ortholog); single-stranded DNA 5'-3' DNA exonuclease activity (ortholog); INVOLVED IN establishment of localization in cell (ortholog); hematopoietic progenitor cell differentiation (ortholog); phagocytosis (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); Experimental Liver Cirrhosis (ortholog); focal segmental glomerulosclerosis 5 (ortholog); FOUND IN early endosome (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955538 3296581 3303187 + 102029444 AGCD01071157;GBDJ01237040;XM_005410848 XP_005410905 MODEL 8714139 protein-coding LOC102017650 Fc receptor-like protein 3 NW_004955468 9539939 9611259 - 102017650 AGCD01052049;AGCD01052050;GBDI01278495;XM_005400124;XM_005400128;XM_013522495;XM_013522496;XM_013522497 XP_005400181;XP_005400185;XP_013377949;XP_013377950;XP_013377951 MODEL 8826414 protein-coding Ptchd3 patched domain containing 3 FOUND IN endoplasmic reticulum (ortholog); sperm midpiece (ortholog) NW_004955476 11870822 11895903 - 102004160 AGCD01055475;GBDF01052329;XM_005401894 XP_005401951 MODEL 8966936 protein-coding Retreg3 reticulophagy regulator family member 3 ENCODES a protein that exhibits endoplasmic reticulum-autophagosome adaptor activity (ortholog); INVOLVED IN collagen catabolic process (ortholog); endoplasmic reticulum organization (ortholog); endoplasmic reticulum tubular network organization (ortholog); ASSOCIATED WITH complex cortical dysplasia with other brain malformations 4 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum tubular network (ortholog); protein-containing complex (ortholog) NW_004955451 16468845 16486773 - 102020406 AGCD01043679;AGCD01043680;GBBH01145983;XM_005394466 XP_005394523 MODEL 39133391 snrna U4 U4 spliceosomal RNA 8853652 protein-coding Wee2 WEE2 oocyte meiosis inhibiting kinase INVOLVED IN female meiotic nuclear division (ortholog); female pronucleus assembly (ortholog); negative regulation of cyclin-dependent protein serine/threonine kinase activity (ortholog); ASSOCIATED WITH Oocyte Maturation Defect 5 (ortholog); RASopathy (ortholog); Sengers syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955494 1836909 1869384 - 102015022 AGCD01061424;GBDJ01283231;XM_013505022 XP_013360476 MODEL 8822491 ncrna LOC102008554 uncharacterized LOC102008554 NW_004955425 10486431 10493561 + 102008554 AGCD01025446;GBDF01209722;XR_261137 MODEL 8830548 protein-coding C1qtnf4 C1q and TNF related 4 INVOLVED IN cell surface receptor signaling pathway via STAT (ortholog); gene expression (ortholog); positive regulation of interleukin-6 production (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIc (ortholog); intellectual disability (ortholog); FOUND IN extracellular space (ortholog) NW_004955422 705165 709261 + 102006787 AGCD01022431;AGCD01022432;GBCE01179740;GBDK01218895;XM_013514050 XP_013369504 MODEL 10163428 ncrna LOC106149914 uncharacterized LOC106149914 NW_004955457 351907 353877 + 106149914 AGCD01046708;XR_001236379 MODEL 8912303 pseudo LOC102024482 lymphoid-restricted membrane protein-like NW_004955504 5887375 5889998 - 102024482 AGCD01064907;XM_005407090 MODEL 8902881 protein-coding LOC102010437 vomeronasal type-1 receptor 4-like NW_004955603 500248 501171 - 102010437 AGCD01076850;XM_005414846 XP_005414903 MODEL 8756488 protein-coding Ssc5d scavenger receptor cysteine rich family member with 5 domains ENCODES a protein that exhibits extracellular matrix binding (ortholog); fibronectin binding (ortholog); laminin binding (ortholog); INVOLVED IN defense response (ortholog); defense response to Gram-negative bacterium (ortholog); defense response to Gram-positive bacterium (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular space (ortholog) NW_004955567 789396 809597 - 102021609 AGCD01074433;GBDJ01132647;XM_005413315;XM_005413316;XM_005413317;XM_005413318;XM_013509236;XM_013509237;XM_013509238 XP_005413372;XP_005413373;XP_005413374;XP_005413375;XP_013364690;XP_013364691;XP_013364692 MODEL 8794080 ncrna LOC102012013 uncharacterized LOC102012013 NW_004955431 310644 317292 - 102012013 AGCD01029865;GBDK01414667;XR_261437 MODEL 8817914 protein-coding Podnl1 podocan like 1 FOUND IN collagen-containing extracellular matrix (ortholog) NW_004955415 32683256 32688736 - 102007425 AGCD01016730;GBDI01215428;XM_005381073;XM_013512208;XM_013512209;XM_013512210;XM_013512211 XP_005381130;XP_013367662;XP_013367663;XP_013367664;XP_013367665 MODEL 10074625 ncrna LOC106147082 uncharacterized LOC106147082 NW_004955517 975901 994521 + 106147082 AGCD01067588;GBCE01037720;XR_001231812 MODEL 9055831 protein-coding LOC102019258 uncharacterized LOC102019258 NW_004955413 23007320 23038825 - 102019258 AGCD01014323;AGCD01014324;GBDK01319843;XM_013511689;XR_001233057;XR_001233058;XR_001233059;XR_001233060;XR_260095 XP_013367143 MODEL 39132859 snorna SNORA73 Small nucleolar RNA SNORA73 family 8881260 protein-coding LOC102011167 glycosyltransferase-like protein LARGE1 NW_004955650 55837 106695 - 102011167 AGCD01077795;AGCD01077796;AGCD01077797;AGCD01077798;AGCD01077799;GBDF01278631;GBDI01324495;XM_005415053 XP_005415110 MODEL 8994981 protein-coding Smim3 small integral membrane protein 3 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955415 3789462 3817117 - 102011760 AGCD01015952;AGCD01015953;GBCE01152699;XM_005380563;XM_013512224;XM_013512225;XM_013512226 XP_005380620;XP_013367678;XP_013367679;XP_013367680 MODEL 8902042 protein-coding Slc30a3 solute carrier family 30 member 3 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN positive regulation of transport (ortholog); zinc ion import into lysosome (ortholog); zinc ion import into synaptic vesicle (ortholog); ASSOCIATED WITH Febrile Seizures (ortholog); Tatton-Brown-Rahman syndrome (ortholog); Zinc Deficiency (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); hippocampal mossy fiber (ortholog) NW_004955469 9235159 9254291 - 102025675 AGCD01052497;AGCD01052498;GBDF01003772;XM_005400475;XM_005400476;XM_005400477;XM_013522596;XM_013522597;XM_013522598 XP_005400532;XP_005400533;XP_005400534;XP_013378050;XP_013378051;XP_013378052 MODEL 9042548 pseudo LOC102012813 general transcription factor IIH subunit 2-like NW_004955446 10843415 10844092 + 102012813 AGCD01040191 MODEL 8960870 protein-coding LOC102021740 olfactory receptor 49-like NW_004955409 37585637 37645425 - 102021740 AGCD01010530;AGCD01010531;AGCD01010532;AGCD01010533;XM_005377184 XP_005377241 MODEL 8867796 pseudo LOC102017656 phosphatase and actin regulator 2 pseudogene NW_004955475 5638964 5641638 - 102017656 AGCD01054924 MODEL 8729759 protein-coding LOC102018782 zinc finger protein 709-like NW_004955569 1517762 1537562 + 102018782 AGCD01074661;AGCD01074662;AGCD01074663;AGCD01074664;GBDF01080575;XM_013509365 XP_013364819 MODEL 9000811 ncrna LOC102008961 uncharacterized LOC102008961 NW_004955500 7699030 7703323 + 102008961 AGCD01063941;GBDF01005578;XR_001231468 MODEL 8850595 protein-coding Ndufa9 NADH:ubiquinone oxidoreductase subunit A9 ENCODES a protein that exhibits NADH dehydrogenase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN circadian rhythm (ortholog); response to glucose (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2J (ortholog); congenital myopathy 5 (ortholog); episodic ataxia type 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrial membrane (ortholog) NW_004955413 2435717 2475158 + 102005918 AGCD01013546;AGCD01013547;AGCD01013548;AGCD01013549;AGCD01013550;GBDF01045939;XM_005378740 XP_005378797 MODEL 8889872 ncrna LOC102015755 uncharacterized LOC102015755 NW_004955517 1389838 1403846 - 102015755 AGCD01067597;GBCQ01153942;XR_001231819;XR_264541;XR_264542 MODEL 8734106 ncrna LOC102006691 uncharacterized LOC102006691 NW_004955506 1675374 1677648 - 102006691 AGCD01065272;GBDI01279025;XR_264324 MODEL 10309232 ncrna LOC106149915 uncharacterized LOC106149915 NW_004955457 14777601 14826076 + 106149915 AGCD01047083;AGCD01047084;XR_001236380 MODEL 9046093 protein-coding Ep300 E1A binding protein p300 ENCODES a protein that exhibits acetylation-dependent protein binding (ortholog); acetyltransferase activity (ortholog); acyltransferase activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); apoptotic process (ortholog); B cell differentiation (ortholog); PARTICIPATES IN androgen signaling pathway; cortisol signaling pathway; estrogen signaling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); adenylosuccinase lyase deficiency (ortholog); Agenesis of Corpus Callosum (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955413 26647553 26727875 + 102015395 AGCD01014465;AGCD01014466;AGCD01014467;GBBH01093312;GBDF01017704;XM_005379339 XP_005379396 MODEL 8979331 protein-coding Prr14l proline rich 14 like ASSOCIATED WITH familial focal epilepsy with variable foci (ortholog) NW_004955455 5802877 5875442 - 102015282 AGCD01045753;AGCD01045754;AGCD01045755;AGCD01045756;AGCD01045757;GBDF01253157;XM_005396334;XM_005396335;XM_013520339;XM_013520340;XM_013520341;XM_013520342;XM_013520343;XM_013520344 XP_005396391;XP_005396392;XP_013375793;XP_013375794;XP_013375795;XP_013375796;XP_013375797;XP_013375798 MODEL 8995558 protein-coding C1qtnf5 C1q and TNF related 5 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN inner ear development (ortholog); protein secretion (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN apical plasma membrane (ortholog); bicellular tight junction (ortholog); cell projection (ortholog) NW_004955412 20419754 20421541 - 102006558 AGCD01013008;GBDI01171673;XM_005378334 XP_005378391 MODEL 8877326 protein-coding Runx3 RUNX family transcription factor 3 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN axon guidance (ortholog); cell maturation (ortholog); chondrocyte differentiation (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); adenocarcinoma (ortholog); ankylosing spondylitis (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955452 4580444 4606820 - 102015800 AGCD01043986;GBDI01170141;GBDI01227289;XM_013519718 XP_013375172 MODEL 8973019 ncrna LOC102010438 uncharacterized LOC102010438 NW_004955649 5929 9935 + 102010438 AGCD01077777;AGCD01077778;GBDJ01151562;XR_265178 MODEL 8866976 protein-coding LOC102003791 olfactory receptor 5D18-like NW_004955511 564979 565959 - 102003791 AGCD01066333;XM_005408200 XP_005408257 MODEL 8910566 protein-coding Pgd phosphogluconate dehydrogenase ENCODES a protein that exhibits carbohydrate binding (ortholog); carboxylic acid binding (ortholog); NADP binding (ortholog); INVOLVED IN D-gluconate metabolic process (ortholog); NADP metabolic process (ortholog); NADPH regeneration (ortholog); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - oxidative phase; ribose 5-phosphate isomerase deficiency pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); COVID-19 (ortholog); FOUND IN cytosol (ortholog) NW_004955486 3344705 3356906 - 102017025 AGCD01059023;AGCD01059024;GBDF01003677;XM_005404019 XP_005404076 MODEL 8820198 protein-coding Ppfia4 PTPRF interacting protein alpha 4 ASSOCIATED WITH atrial fibrillation (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN glutamatergic synapse (ortholog); parallel fiber to Purkinje cell synapse (ortholog); presynapse (ortholog) NW_004955406 39047069 39094663 + 102006420 AGCD01006618;GBCE01131582;XM_013522498;XM_013522500;XM_013522503;XM_013522514;XR_001236928;XR_001236930;XR_001236934 XP_013377952;XP_013377954;XP_013377957;XP_013377968 MODEL 8719892 protein-coding Tll1 tolloid like 1 ENCODES a protein that exhibits collagen binding (ortholog); ASSOCIATED WITH atrial heart septal defect 6 (ortholog); congenital heart disease (ortholog); coronary artery disease (ortholog) NW_004955403 39299461 39491638 - 102011072 AGCD01002627;AGCD01002628;AGCD01002629;AGCD01002630;GBCE01123233;GBCQ01016540;XM_005373585 XP_005373642 MODEL 10289125 protein-coding Tspan18 tetraspanin 18 INVOLVED IN calcium-ion regulated exocytosis (ortholog); establishment of localization in cell (ortholog); hemostasis (ortholog); ASSOCIATED WITH intellectual disability (ortholog); schizophrenia (ortholog) NW_004955422 2833124 2871460 - 106146238 AGCD01022495;XM_013514197;XM_013514198 XP_013369651;XP_013369652 MODEL 8772909 protein-coding Pld5 phospholipase D family member 5 ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 54 (ortholog); fumarase deficiency (ortholog) NW_004955406 5810286 5994601 - 102027264 AGCD01005742;AGCD01005743;AGCD01005744;GBBH01226778;XM_013520242;XM_013520247 XP_013375696;XP_013375701 MODEL 8709743 trna Trnak-cuu transfer RNA lysine (anticodon CUU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978827 AGCD01037806;AGCD01051106;AGCD01057606;AGCD01069830;AGCD01074502 MODEL 8838948 ncrna LOC102010442 uncharacterized LOC102010442 NW_004955452 2929736 2933649 - 102010442 AGCD01043906;GBDF01177228;XR_262642 MODEL 9012887 pseudo LOC102023445 probable ATP-dependent RNA helicase DDX41 pseudogene NW_004955460 12857980 12860166 + 102023445 AGCD01048664 MODEL 39133393 snrna U4 U4 spliceosomal RNA 8699697 pseudo LOC102010809 protein FAM161A pseudogene NW_004955419 28597487 28599260 - 102010809 AGCD01020469 MODEL 9047660 protein-coding Wfdc1 WAP four-disulfide core domain 1 INVOLVED IN negative regulation of epithelial cell proliferation (ortholog); negative regulation of inflammatory response (ortholog); negative regulation of wound healing (ortholog); ASSOCIATED WITH COVID-19 (ortholog); melanoma (ortholog); persistent fetal circulation syndrome (ortholog); FOUND IN extracellular space (ortholog) NW_004955564 22536 38091 - 102017517 AGCD01074187;GBDK01412209;XM_005413214;XM_005413215;XM_013509194;XM_013509195 XP_005413271;XP_005413272;XP_013364648;XP_013364649 MODEL 8934957 protein-coding LOC102024487 melanoma-associated antigen B5-like NW_004955509 6427045 6430028 + 102024487 AGCD01066122;GBDF01213466;XM_013506290 XP_013361744 MODEL 9012535 pseudo LOC102012815 poly(rC)-binding protein 2 pseudogene NW_004955576 1428099 1429219 + 102012815 AGCD01075376 MODEL 8865990 ncrna LOC102021742 uncharacterized LOC102021742 NW_004955410 19646329 19650590 + 102021742 AGCD01011025;AGCD01011026;GBDF01304716;XR_001232689;XR_001232690;XR_001232691;XR_001232692 MODEL 8706896 protein-coding Pycr1 pyrroline-5-carboxylate reductase 1 ENCODES a protein that exhibits identical protein binding (ortholog); pyrroline-5-carboxylate reductase activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); L-proline biosynthetic process (ortholog); negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH Autosomal Recessive Cutis Laxa (ortholog); autosomal recessive cutis laxa type IIB (ortholog); autosomal recessive cutis laxa type IIIB (ortholog); FOUND IN mitochondrion (ortholog) NW_004955506 1231874 1236550 + 102023056 AGCD01065251;GBCB01119841;XM_005407242;XM_005407244;XM_013506062;XM_013506063 XP_005407299;XP_005407301;XP_013361516;XP_013361517 MODEL 8807516 protein-coding LOC102015757 acyl-coenzyme A thioesterase 4 NW_004955523 1778663 1781028 - 102015757 AGCD01068542;GBBH01187375;XM_013507141;XM_013507142 XP_013362595;XP_013362596 MODEL 8993297 protein-coding LOC102007058 keratin, type II cuticular Hb5 NW_004955547 2711781 2718828 - 102007058 AGCD01072294;GBCB01095717;XM_005411935 XP_005411992 MODEL 8989751 protein-coding Ssh1 slingshot protein phosphatase 1 ENCODES a protein that exhibits actin binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cell morphogenesis (ortholog); cellular response to ATP (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH Neointima (ortholog); primary ovarian insufficiency (ortholog); FOUND IN cell leading edge (ortholog); cell projection (ortholog); cytoplasm (ortholog) NW_004955455 10019992 10077485 - 102027716 AGCD01045935;AGCD01045936;GBCE01085173;GBDF01016189;XM_013520441 XP_013375895 MODEL 8778156 protein-coding LOC102005607 uncharacterized protein C7orf34 homolog NW_004955494 875367 876635 + 102005607 AGCD01061387;GBDF01006174;XM_005405389;XM_005405390 XP_005405446;XP_005405447 MODEL 8922641 protein-coding Trappc13 trafficking protein particle complex subunit 13 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955446 3433675 3467539 - 102019448 AGCD01040017;AGCD01040018;GBDF01158421;XM_013518409;XM_013518410 XP_013373863;XP_013373864 MODEL 8938549 protein-coding Pdlim4 PDZ and LIM domain 4 ENCODES a protein that exhibits actinin binding (ortholog); alpha-actinin binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); excitatory chemical synaptic transmission (ortholog); positive regulation of stress fiber assembly (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Lung Neoplasms (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog) NW_004955408 3638264 3647792 + 102027382 AGCD01008068;GBDI01120451;GBDJ01024225;XM_013508295 XP_013363749 MODEL 8838828 pseudo LOC102003793 R-spondin-3 pseudogene NW_004955514 156613 206653 - 102003793 AGCD01066997;AGCD01066998;AGCD01066999;AGCD01067000;AGCD01067001 MODEL 8902891 pseudo LOC102011168 telomeric repeat-binding factor 1 pseudogene NW_004957891 76 1145 - 102011168 AGCD01081287 MODEL 8822290 protein-coding Pim2 Pim-2 proto-oncogene, serine/threonine kinase ENCODES a protein that exhibits protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN apoptotic mitochondrial changes (ortholog); apoptotic process (ortholog); G1/S transition of mitotic cell cycle (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog) NW_004955543 444314 449201 - 102028018 AGCD01071585;GBDJ01088625;XM_005411290;XM_005411291 XP_005411347;XP_005411348 MODEL 9022747 protein-coding Ssh2 slingshot protein phosphatase 2 ENCODES a protein that exhibits actin binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); positive regulation of cell migration (ortholog); protein dephosphorylation (ortholog); ASSOCIATED WITH neurofibromatosis 1 (ortholog) NW_004955481 3380212 3633074 + 102008314 AGCD01056903;AGCD01056904;AGCD01056905;AGCD01056906;AGCD01056907;AGCD01056908;AGCD01056909;GBDF01161851;XM_005402672;XM_005402673;XM_013503356 XP_005402729;XP_005402730;XP_013358810 MODEL 39131372 protein-coding SMIM30 small integral membrane protein 30 8885081 protein-coding LOC102023450 acid ceramidase-like NW_004955411 35205669 35207222 + 102023450 AGCD01012421;GBDF01118993;XM_005377888 XP_005377945 MODEL 8877912 pseudo LOC102009712 olfactory receptor 2S2-like NW_004955472 459622 466367 + 102009712 AGCD01053339 MODEL 8800821 protein-coding LOC102018784 arylacetamide deacetylase-like NW_004955448 2910775 2917084 - 102018784 AGCD01041293;GBDJ01157315;XM_013518615 XP_013374069 MODEL 8940370 protein-coding Tll2 tolloid like 2 INVOLVED IN negative regulation of skeletal muscle tissue growth (ortholog); ASSOCIATED WITH spinal muscular atrophy (ortholog) NW_004955507 2591619 2718161 - 102017483 AGCD01065591;AGCD01065592;GBBH01045943;XM_005407577 XP_005407634 MODEL 8909495 protein-coding Slc6a4 solute carrier family 6 member 4 ENCODES a protein that exhibits actin filament binding (ortholog); antiporter activity (ortholog); cocaine binding (ortholog); INVOLVED IN behavioral response to cocaine (ortholog); brain morphogenesis (ortholog); cellular response to cGMP (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH AIDS Dementia Complex (ortholog); alcohol dependence (ortholog); alcohol use disorder (ortholog); FOUND IN endomembrane system (ortholog); focal adhesion (ortholog); membrane raft (ortholog) NW_004955481 3088440 3122421 + 102005469 AGCD01056893;AGCD01056894;GBDK01358674;XM_005402661;XM_005402662;XM_005402663;XM_005402664;XM_013503528 XP_005402718;XP_005402719;XP_005402720;XP_005402721;XP_013358982 MODEL 8807017 protein-coding Slc30a4 solute carrier family 30 member 4 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN lactation (ortholog); response to toxic substance (ortholog); response to vitamin A (ortholog); ASSOCIATED WITH AGAT deficiency (ortholog); Alzheimer's disease (ortholog); Bloom syndrome (ortholog); FOUND IN cytoplasm (ortholog); endosome membrane (ortholog); late endosome (ortholog) NW_004955409 7963454 7991600 + 102024771 AGCD01009371;GBCE01097726;GBDF01000969;XM_005377147 XP_005377204 MODEL 8880492 protein-coding Pacs2 phosphofurin acidic cluster sorting protein 2 INVOLVED IN autophagosome assembly (ortholog); endoplasmic reticulum calcium ion homeostasis (ortholog); mitochondrion-endoplasmic reticulum membrane tethering (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); developmental and epileptic encephalopathy 1 (ortholog); developmental and epileptic encephalopathy 66 (ortholog); FOUND IN endoplasmic reticulum (ortholog); mitochondrion (ortholog) NW_004955538 3559738 3616862 + 102006820 AGCD01071172;GBBH01140227;GBCQ01092841;XM_005410865;XM_013507854;XM_013507855;XM_013507856;XM_013507858;XM_013507859;XM_013507860;XM_013507861 XP_005410922;XP_013363308;XP_013363309;XP_013363310;XP_013363312;XP_013363313;XP_013363314;XP_013363315 MODEL 8709564 protein-coding LOC102024488 olfactory receptor 1020-like NW_004955511 1747705 1751671 + 102024488 AGCD01066378;XM_005408242 XP_005408299 MODEL 10246395 ncrna LOC106149916 uncharacterized LOC106149916 NW_004955457 515882 533018 - 106149916 AGCD01046711;XR_001236381 MODEL 39131555 protein-coding PIM3 Pim-3 proto-oncogene, serine/threonine kinase 8922337 ncrna LOC102021744 uncharacterized LOC102021744 NW_004955466 3543674 3550573 + 102021744 AGCD01050796;GBDF01211120;XR_263286;XR_263287 MODEL 8896653 protein-coding LOC102019261 taste receptor type 2 member 10-like NW_004955413 6981018 6981974 + 102019261 AGCD01013788;XM_005379615 XP_005379672 MODEL 8964918 protein-coding LOC102012015 carboxylesterase 1D-like NW_004955433 13630963 13654307 - 102012015 AGCD01031696;GBDF01156979;XM_013516095;XM_013516096 XP_013371549;XP_013371550 MODEL 8917398 protein-coding Podxl podocalyxin like INVOLVED IN cell migration (ortholog); epithelial tube formation (ortholog); leukocyte migration (ortholog); ASSOCIATED WITH carotid artery disease (ortholog); genetic disease (ortholog); Hemorrhage (ortholog); FOUND IN apical plasma membrane (ortholog); cell body (ortholog); centriolar satellite (ortholog) NW_004955410 36191797 36239970 + 102007635 AGCD01011422;GBBH01063522;GBCB01119929;XM_005377546 XP_005377603 MODEL 8754799 protein-coding Rusc1 RUN and SH3 domain containing 1 ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN protein polyubiquitination (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955545 1765364 1773889 + 102006825 AGCD01071869;GBDK01118008;XM_013508229;XM_013508230;XM_013508231;XM_013508232;XM_013508233 XP_013363683;XP_013363684;XP_013363685;XP_013363686;XP_013363687 MODEL 8920943 protein-coding Ptchd4 patched domain containing 4 NW_004955437 12253731 12423865 - 102014709 AGCD01034603;AGCD01034604;AGCD01034605;AGCD01034606;AGCD01034607;AGCD01034608;GBDF01162944;XM_005389880 XP_005389937 MODEL 8888967 protein-coding Lipg lipase G, endothelial type ENCODES a protein that exhibits phospholipase A1 activity (ortholog); phospholipase activity (ortholog); triacylglycerol lipase activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); high-density lipoprotein particle remodeling (ortholog); phospholipid homeostasis (ortholog); ASSOCIATED WITH arteriosclerosis (ortholog); cardiovascular system disease (ortholog); cerebral infarction (ortholog); FOUND IN cell surface (ortholog); early endosome (ortholog); extracellular space (ortholog) NW_004955402 34666757 34689726 + 102013987 AGCD01000868;GBDJ01313997;XM_005372911 XP_005372968 MODEL 8721160 protein-coding LOC102013213 uncharacterized LOC102013213 NW_004955538 373207 647107 + 102013213 AGCD01070995;AGCD01070996;AGCD01070997;AGCD01070998;AGCD01070999;AGCD01071000;AGCD01071001;AGCD01071002;AGCD01071003;AGCD01071004;AGCD01071005;AGCD01071006;AGCD01071007;AGCD01071008;AGCD01071009;AGCD01071010;AGCD01071011;AGCD01071012;AGCD01071013;AGCD01071014;AGCD01071015;AGCD01071016;AGCD01071017;AGCD01071018;AGCD01071019;AGCD01071020;AGCD01071021;AGCD01071022;AGCD01071023;AGCD01071024;AGCD01071025;AGCD01071026;AGCD01071027;AGCD01071028;AGCD01071029;AGCD01071030;AGCD01071031;AGCD01071032;GBDF01017551;XM_005410885 XP_005410942 MODEL 8724654 protein-coding LOC102008964 zinc finger CCHC-type and RNA-binding motif-containing protein 1 NW_004955426 18643581 18647670 - 102008964 AGCD01026526;AGCD01026527;GBCC01039405;XM_005386263 XP_005386320 MODEL 8934344 protein-coding Ptcra pre T cell antigen receptor alpha INVOLVED IN alpha-beta T cell differentiation (ortholog); negative regulation of thymocyte apoptotic process (ortholog); thymocyte apoptotic process (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH Immunodeficiency 126 (ortholog); infantile Refsum disease (ortholog); polycystic ovary syndrome (ortholog); FOUND IN plasma membrane (ortholog) NW_004955437 8920997 8927354 + 102025508 AGCD01034507;GBCQ01091734;XM_005389728;XM_005389729;XM_005389730;XM_005389731;XM_005389732;XM_013516772 XP_005389785;XP_005389786;XP_005389787;XP_005389788;XP_005389789;XP_013372226 MODEL 8758594 ncrna LOC102023451 uncharacterized LOC102023451 NW_004955465 5552993 5555587 + 102023451 AGCD01050431;GBDF01260515;XR_263236 MODEL 39131316 protein-coding WFDC1 WAP four-disulfide core domain 1 9058472 protein-coding LOC102006693 cytochrome P450 2C26-like NW_004955507 1438970 1475012 + 102006693 AGCD01065558;AGCD01065559;AGCD01065560;AGCD01065561;GBDJ01058629;XM_013506234 XP_013361688 MODEL 8792398 protein-coding C1qtnf6 C1q and TNF related 6 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); middle cerebral artery infarction (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog); protein-containing complex (ortholog) NW_004955413 23661788 23669793 - 102008523 AGCD01014333;GBDK01025155;XM_013511301 XP_013366755 MODEL 39132863 snorna SNORA73 Small nucleolar RNA SNORA73 family 10285825 ncrna LOC106149917 uncharacterized LOC106149917 NW_004955457 780625 801104 - 106149917 AGCD01046714;AGCD01046715;GBDF01099763;XR_001236382 MODEL 9014762 protein-coding Prr15 proline rich 15 ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955410 31012402 31016035 + 102016140 AGCD01011313;GBCQ01093607;XM_005377484;XR_001232750;XR_001232751 XP_005377541 MODEL 8735131 protein-coding Pgf placental growth factor ENCODES a protein that exhibits growth factor activity (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); branching involved in ureteric bud morphogenesis (ortholog); cellular response to hormone stimulus (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); amyotrophic lateral sclerosis (ortholog); ankylosing spondylitis (ortholog); FOUND IN extracellular space (ortholog) NW_004955523 616196 627055 + 102015139 AGCD01068471;AGCD01068472;GBBH01120043;GBDI01060117;XM_005409381 XP_005409438 MODEL 8738003 ncrna LOC102008558 uncharacterized LOC102008558 NW_004955430 15103778 15104993 + 102008558 AGCD01029588;GBDF01089462;XR_261428 MODEL 9038065 protein-coding LOC102005611 bcl-2-like protein 13 NW_004955423 25019836 25046086 + 102005611 AGCD01024050;AGCD01024051;XM_013514366 XP_013369820 MODEL 9014495 protein-coding LOC102024494 chromosome unknown open reading frame, human C9orf153 NW_004955432 1362227 1386118 + 102024494 AGCD01030592;GBDF01124972;XM_005387917;XM_005387918;XM_005387920;XM_013515949 XP_005387974;XP_005387975;XP_005387977;XP_013371403 MODEL 8888481 protein-coding Pld6 phospholipase D family member 6 ENCODES a protein that exhibits cardiolipin hydrolase activity (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN meiotic cell cycle (ortholog); mitochondrial fusion (ortholog); P granule organization (ortholog); PARTICIPATES IN mitochondria fusion pathway; ASSOCIATED WITH autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); common variable immunodeficiency 2 (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955577 698741 702977 + 102025634 AGCD01075411;AGCD01075412;GBCB01110589;XM_013509636 XP_013365090 MODEL 8812521 protein-coding Tspan2 tetraspanin 2 INVOLVED IN astrocyte development (ortholog); axon development (ortholog); inflammatory response (ortholog); ASSOCIATED WITH RASopathy (ortholog); Stroke (ortholog); FOUND IN myelin sheath (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955435 18344320 18371248 - 102003689 AGCD01033403;GBCB01057093;XM_013516547;XM_013516548 XP_013372001;XP_013372002 MODEL 8978301 protein-coding LOC102008154 fMet-Leu-Phe receptor NW_004955558 805352 810836 + 102008154 AGCD01073392;GBDK01070147;XM_005412671 XP_005412728 MODEL 9013841 protein-coding Pcdh1 protocadherin 1 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cell junction (ortholog); intracellular membrane-bounded organelle (ortholog); nucleolus (ortholog) NW_004955415 11916095 11934658 + 102030413 AGCD01016181;GBCQ01098063;GBDK01229393;XM_005380718 XP_005380775 MODEL 8807755 protein-coding Sostdc1 sclerostin domain containing 1 ENCODES a protein that exhibits BMP binding (ortholog); BMP receptor activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); canonical Wnt signaling pathway (ortholog); cell fate commitment (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A7 (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN extracellular space (ortholog) NW_004955410 19657805 19662121 - 102022057 AGCD01011027;GBDI01025966;XM_005377334 XP_005377391 MODEL 8740399 protein-coding Pdlim5 PDZ and LIM domain 5 ENCODES a protein that exhibits actin binding (ortholog); actinin binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN cell growth involved in cardiac muscle cell development (ortholog); regulation of dendritic spine morphogenesis (ortholog); regulation of postsynapse assembly (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Crohn's disease (ortholog); dilated cardiomyopathy (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955405 5109778 5312192 + 102011944 AGCD01004674;AGCD01004675;AGCD01004676;AGCD01004677;AGCD01004678;AGCD01004679;GBCE01117951;XM_005374259;XM_005374260;XM_005374261;XM_005374262;XM_005374263;XM_005374265;XM_005374266;XM_013517363;XM_013517385 XP_005374316;XP_005374317;XP_005374318;XP_005374319;XP_005374320;XP_005374322;XP_005374323;XP_013372817;XP_013372839 MODEL 8758181 protein-coding Rusc2 RUN and SH3 domain containing 2 ENCODES a protein that exhibits small GTPase binding (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog) NW_004955472 698021 742966 - 102011981 AGCD01053351;AGCD01053352;AGCD01053353;AGCD01053354;GBBH01088464;GBDI01256209;XM_013522959 XP_013378413 MODEL 8922785 ncrna LOC102008965 uncharacterized LOC102008965 NW_004955508 2550384 2643799 + 102008965 AGCD01065788;AGCD01065789;AGCD01065790;AGCD01065791;GBDF01249960;XR_264386 MODEL 8764433 protein-coding LOC102012817 histone H2B type 3-B NW_004955581 91596 93803 - 102012817 AGCD01075657;XM_005414232 XP_005414289 MODEL 8704693 protein-coding Ssh3 slingshot protein phosphatase 3 ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); immunodeficiency 90 (ortholog); intellectual disability (ortholog) NW_004955422 18149846 18158257 - 102023610 AGCD01022938;GBBH01118306;XM_005384351;XM_005384352;XM_005384353 XP_005384408;XP_005384409;XP_005384410 MODEL 10328605 ncrna LOC106147083 uncharacterized LOC106147083 NW_004955517 2189871 2202540 + 106147083 AGCD01067619;GBDF01072356;XR_001231813;XR_001231814;XR_001231815;XR_001231816 MODEL 8981221 protein-coding Rbfox3 RNA binding fox-1 homolog 3 ENCODES a protein that exhibits DNA binding (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); brain infarction (ortholog); generalized epilepsy (ortholog); FOUND IN neuronal cell body (ortholog); nucleus (ortholog); perikaryon (ortholog) NW_004955506 3243637 3646789 + 102024144 AGCD01065315;AGCD01065316;AGCD01065317;AGCD01065318;GBDK01028890;XM_005407339;XM_005407340;XM_005407342;XM_013506116;XM_013506117;XM_013506118 XP_005407396;XP_005407397;XP_005407399;XP_013361570;XP_013361571;XP_013361572 MODEL 8960196 pseudo LOC102021745 28S ribosomal protein S36, mitochondrial pseudogene NW_004955412 24132530 24132928 - 102021745 AGCD01013110;XM_005378380 MODEL 8998604 protein-coding Retsat retinol saturase ENCODES a protein that exhibits all-trans-retinol 13,14-reductase activity (ortholog); INVOLVED IN retinoid metabolic process (ortholog); retinol metabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH Simpson-Golabi-Behmel syndrome type 1 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); nuclear membrane (ortholog); nuclear outer membrane (ortholog) NW_004955424 2107602 2122029 + 102004946 AGCD01024262;AGCD01024263;GBDF01226131;XM_005385436 XP_005385493 MODEL 8815909 protein-coding Pacsin1 protein kinase C and casein kinase substrate in neurons 1 ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); identical protein binding (ortholog); phospholipid binding (ortholog); INVOLVED IN cytoskeleton organization (ortholog); negative regulation of endocytosis (ortholog); neuron projection morphogenesis (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN axon terminus (ortholog); COPI-coated vesicle (ortholog); cytoplasm (ortholog) NW_004955437 2621013 2665194 + 102017500 AGCD01034282;AGCD01034283;AGCD01034284;GBBH01183696;XM_005389526;XM_013516920 XP_005389583;XP_013372374 MODEL 8741107 protein-coding LOC102019266 translation initiation factor IF-2-like NW_004955414 19651075 19652661 + 102019266 AGCD01015327;GBCB01111580;GBDK01347780;XM_013511755 XP_013367209 MODEL 8845315 protein-coding Ripor3 RIPOR family member 3 ASSOCIATED WITH prostate cancer (ortholog) NW_004955445 7685898 7753370 + 102025299 AGCD01039550;AGCD01039551;GBCQ01098176;XM_005392313;XM_013518352;XM_013518353;XM_013518354;XM_013518355;XM_013518356 XP_005392370;XP_013373806;XP_013373807;XP_013373808;XP_013373809;XP_013373810 MODEL 39132866 snorna SNORA73 Small nucleolar RNA SNORA73 family 8938032 ncrna LOC102003796 uncharacterized LOC102003796 NW_004955433 12458790 12516903 - 102003796 AGCD01031664;GBBH01126520;XR_001234747;XR_001234748;XR_001234749;XR_001234750;XR_001234751;XR_001234752;XR_261587 MODEL 10214953 ncrna LOC106147084 uncharacterized LOC106147084 NW_004955402 10998277 11036252 + 106147084 AGCD01000295;XR_001231833 MODEL 9019891 pseudo LOC102011172 translationally-controlled tumor protein pseudogene NW_004955405 31816779 31817304 - 102011172 AGCD01005306;XM_005374671 MODEL 8995090 protein-coding LOC102017662 histone H4 NW_004955483 846605 850748 + 102017662 AGCD01057634;XM_013503799 XP_013359253 MODEL 8773692 protein-coding Rad51ap2 RAD51 associated protein 2 FOUND IN protein-containing complex (ortholog) NW_004955469 312601 320227 - 102025563 AGCD01052219;AGCD01052220;GBDF01078994;XM_005415294 XP_005415351 MODEL 8895369 pseudo LOC102009713 tubulin alpha-1 chain-like NW_004955415 27942717 27943523 - 102009713 AGCD01016636 MODEL 8846431 protein-coding LOC102010812 zinc finger protein 35 NW_004955420 26847358 26895078 - 102010812 AGCD01021434;AGCD01021435;GBCB01086637;XM_013513410;XM_013513411;XM_013513412;XM_013513413;XM_013513414;XM_013513415 XP_013368864;XP_013368865;XP_013368866;XP_013368867;XP_013368868;XP_013368869 MODEL 8866538 protein-coding Sf3a3 splicing factor 3a subunit 3 INVOLVED IN mRNA processing (ortholog); mRNA splicing, via spliceosome (ortholog); U2-type prespliceosome assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955452 15691729 15715782 - 102016339 AGCD01044494;AGCD01044495;GBCB01056221;XM_005395224 XP_005395281 MODEL 8870362 protein-coding LOC102011176 keratin-associated protein 20-2-like NW_004955407 30259322 30259501 + 102011176 AGCD01007630;XM_005375653 XP_005375710 MODEL 8882801 protein-coding Slc6a5 solute carrier family 6 member 5 ENCODES a protein that exhibits glycine transmembrane transporter activity (ortholog); glycine:sodium symporter activity (ortholog); INVOLVED IN glycine import across plasma membrane (ortholog); glycine transport (ortholog); neurotransmitter reuptake (ortholog); ASSOCIATED WITH Apnea (ortholog); brain disease (ortholog); Cryopyrin-Associated Periodic Syndromes (ortholog); FOUND IN dense core granule (ortholog); endosome (ortholog); glycinergic synapse (ortholog) NW_004955476 1380869 1433005 + 102007333 AGCD01055205;GBDF01078637;XM_013502900 XP_013358354 MODEL 8707427 protein-coding Ep400 E1A binding protein p400 ENCODES a protein that exhibits chromatin binding (ortholog); protein antigen binding (ortholog); INVOLVED IN positive regulation of double-strand break repair via homologous recombination (ortholog); regulation of cell cycle (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH colorectal cancer (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nuclear speck (ortholog); nucleosome (ortholog) NW_004955482 639316 746331 - 102022599 AGCD01057180;AGCD01057181;AGCD01057182;AGCD01057183;AGCD01057184;AGCD01057185;AGCD01057186;GBCQ01006240;XM_005402961;XM_013503598;XM_013503599;XM_013503600;XM_013503601;XM_013503602;XM_013503603;XM_013503604;XM_013503605;XM_013503606;XM_013503607;XM_013503608 XP_005403018;XP_013359052;XP_013359053;XP_013359054;XP_013359055;XP_013359056;XP_013359057;XP_013359058;XP_013359059;XP_013359060;XP_013359061;XP_013359062 MODEL 8763827 ncrna LOC102015771 uncharacterized LOC102015771 NW_004955439 4407806 4419003 + 102015771 AGCD01035709;GBBH01021909;XR_261971 MODEL 8992688 protein-coding Tspan3 tetraspanin 3 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); schizophrenia (ortholog) NW_004955450 1916067 1937364 - 102020506 AGCD01042371;GBCB01005521;XM_005393482 XP_005393539 MODEL 8902761 protein-coding Ptdss1 phosphatidylserine synthase 1 ENCODES a protein that exhibits L-serine-phosphatidylcholine phosphatidyltransferase activity (ortholog); L-serine-phosphatidylethanolamine phosphatidyltransferase activity (ortholog); INVOLVED IN phosphatidylserine biosynthetic process (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); Klippel-Feil syndrome 1 (ortholog); Lenz-Majewski hyperostotic dwarfism (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955417 12268908 12327127 + 102005804 AGCD01018160;AGCD01018161;AGCD01018162;GBDF01049061;XM_005381833 XP_005381890 MODEL 8848885 ncrna LOC102007060 uncharacterized LOC102007060 NW_004955554 703446 714957 + 102007060 AGCD01072953;GBDF01082739;XR_001232295;XR_264946 MODEL 8897077 protein-coding LOC102006694 olfactory receptor 13A1-like NW_004955507 6424542 6432509 + 102006694 AGCD01065716;XM_005407723 XP_005407780 MODEL 8731343 protein-coding Wfdc2 WAP four-disulfide core domain 2 ENCODES a protein that exhibits aspartic-type endopeptidase inhibitor activity (ortholog); serine-type endopeptidase inhibitor activity (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); Bronchiectasis and Nasal Polyposis (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955445 11723634 11730304 - 102004654 AGCD01039714;GBDF01122565;XM_005392423;XM_013518349 XP_005392480;XP_013373803 MODEL 8911275 protein-coding Trappc14 trafficking protein particle complex subunit 14 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); INVOLVED IN cilium assembly (ortholog); regulation of cell population proliferation (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); primary autosomal recessive microcephaly 25 (ortholog); FOUND IN centriolar satellite (ortholog); intracellular membrane-bounded organelle (ortholog); midbody (ortholog) NW_004955573 644907 649363 + 102011708 AGCD01074995;AGCD01074996;GBCE01135187;XM_013509467 XP_013364921 MODEL 8926611 protein-coding LOC102008966 olfactory receptor 1030-like NW_004955511 1700555 1701493 - 102008966 AGCD01066377;XM_005407972 XP_005408029 MODEL 8931334 protein-coding Podxl2 podocalyxin like 2 INVOLVED IN leukocyte tethering or rolling (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); immunodeficiency 21 (ortholog); Primary Lymphedema with Myelodysplasia (ortholog) NW_004955429 15968877 15995617 - 102028778 AGCD01028824;GBCE01187822;XM_013515485 XP_013370939 MODEL 8729475 protein-coding Prr15l proline rich 15 like ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog) NW_004955451 13180880 13182035 + 102010857 AGCD01043458;GBBH01032907;GBDI01064474;XM_013519364 XP_013374818 MODEL 8869541 protein-coding Liph lipase H ENCODES a protein that exhibits heparin binding (ortholog); phospholipase activity (ortholog); INVOLVED IN lipid catabolic process (ortholog); ASSOCIATED WITH Currarino syndrome (ortholog); familial woolly hair syndrome (ortholog); genetic disease (ortholog); FOUND IN extracellular space (ortholog); plasma membrane (ortholog) NW_004955420 22015254 22049508 + 102010908 AGCD01021178;AGCD01021179;AGCD01021180;GBBH01172461;XM_005383294 XP_005383351 MODEL 8883672 protein-coding LOC102005616 cytochrome P450 2C18-like NW_004955507 1041847 1146933 + 102005616 AGCD01065501;AGCD01065502;AGCD01065503;AGCD01065504;AGCD01065505;AGCD01065506;AGCD01065507;AGCD01065508;AGCD01065509;AGCD01065510;AGCD01065511;AGCD01065512;AGCD01065513;AGCD01065514;AGCD01065515;AGCD01065516;GBDF01111538;XM_013506232 XP_013361686 MODEL 8948395 protein-coding LOC102019268 cytoskeleton-associated protein 2-like NW_004955475 12067113 12069248 - 102019268 AGCD01055178;GBDI01308945;XM_013502802 XP_013358256 MODEL 39132875 snorna SNORA73 Small nucleolar RNA SNORA73 family 9035453 ncrna LOC102018786 uncharacterized LOC102018786 NW_004955589 799399 809196 + 102018786 AGCD01076183;GBCQ01013843;XR_001232533;XR_001232534 MODEL 8996269 pseudo LOC102003803 calmodulin-like NW_004955437 19660488 19661153 + 102003803 AGCD01034865 MODEL 8825508 protein-coding Tln1 talin 1 ENCODES a protein that exhibits integrin binding (ortholog); LIM domain binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN cell-substrate junction assembly (ortholog); cortical actin cytoskeleton organization (ortholog); cortical microtubule organization (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; integrin mediated signaling pathway; ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN adherens junction (ortholog); focal adhesion (ortholog) NW_004955472 568939 603676 + 102007109 AGCD01053341;GBCB01022575;XM_005401002;XM_005401004;XM_013522935 XP_005401059;XP_005401061;XP_013378389 MODEL 8871370 protein-coding Sowaha sosondowah ankyrin repeat domain family member A ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955408 4187724 4189059 + 102015929 AGCD01008091;GBCQ01088487;GBDI01055419;XM_005376574 XP_005376631 MODEL 8772282 protein-coding Pim3 Pim-3 proto-oncogene, serine/threonine kinase ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to forskolin (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog); FOUND IN cytosol (ortholog) NW_004955413 33068033 33071344 + 102014345 AGCD01014655;AGCD01014656;GBCB01038423;GBCE01052937;XM_013511307 XP_013366761 MODEL 8700975 protein-coding LOC102005618 UPF0061 protein ETA_18310-like NW_004955429 2822671 2866918 + 102005618 AGCD01028439;AGCD01028440;AGCD01028441;AGCD01028442;AGCD01028443;GBBH01006669;GBCQ01067969;XM_005386894 XP_005386951 MODEL 9051895 protein-coding Pycr2 pyrroline-5-carboxylate reductase 2 ENCODES a protein that exhibits pyrroline-5-carboxylate reductase activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); proline biosynthetic process (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955489 138600 143112 - 102008736 AGCD01059778;GBBH01031760;GBDJ01018987;XM_005404488 XP_005404545 MODEL 39131539 protein-coding C1QTNF6 C1q and TNF related 6 8900040 pseudo LOC102012019 RNA-binding motif protein, X chromosome-like NW_004955436 8932484 8933843 - 102012019 AGCD01033755;XR_261778 MODEL 8958053 protein-coding Ssmem1 serine rich single-pass membrane protein 1 ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955479 10864515 10875033 + 102014896 AGCD01056563;AGCD01056564;GBDF01049460;XM_005402430;XM_005402431;XM_005402432 XP_005402487;XP_005402488;XP_005402489 MODEL 39133395 snrna U4 U4 spliceosomal RNA 39131577 protein-coding SMIM32 small integral membrane protein 32 8771372 protein-coding Ndufaf1 NADH:ubiquinone oxidoreductase complex assembly factor 1 INVOLVED IN chaperone-mediated protein complex assembly (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); COVID-19 (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955416 8210198 8222986 - 102007427 AGCD01017037;GBBH01126304;XM_005381284 XP_005381341 MODEL 8756518 protein-coding Pof1b POF1B actin binding protein ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); bicellular tight junction assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN actin filament (ortholog); adherens junction (ortholog); bicellular tight junction (ortholog) NW_004955529 4137746 4224542 - 102024377 AGCD01069818;AGCD01069819;AGCD01069820;GBCC01000347;XM_005410090;XM_013507535;XM_013507536 XP_005410147;XP_013362989;XP_013362990 MODEL 8866396 protein-coding LOC102013215 olfactory receptor 12-like NW_004955542 1185898 1186848 - 102013215 AGCD01071490;XM_005411242 XP_005411299 MODEL 8789487 protein-coding Trappc2 trafficking protein particle complex subunit 2 ENCODES a protein that exhibits transcription corepressor binding (ortholog); transcription regulator inhibitor activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN positive regulation of gene expression (ortholog); skeletal system development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); connective tissue disease (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); intracellular membrane-bounded organelle (ortholog); nuclear outer membrane (ortholog) NW_004955519 4470906 4485969 + 102024944 AGCD01067983;GBDK01393820;XM_005409200 XP_005409257 MODEL 9053511 protein-coding Pacsin2 protein kinase C and casein kinase substrate in neurons 2 ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); identical protein binding (ortholog); lipid binding (ortholog); INVOLVED IN caveola assembly (ortholog); caveolin-mediated endocytosis (ortholog); cell migration involved in sprouting angiogenesis (ortholog); ASSOCIATED WITH Developmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities (ortholog); intellectual disability (ortholog); juvenile rheumatoid arthritis (ortholog); FOUND IN adherens junction (ortholog); caveola (ortholog); cell-cell junction (ortholog) NW_004955413 28119769 28209258 - 102014343 AGCD01014552;GBDK01079688;XM_013511482;XM_013511483 XP_013366936;XP_013366937 MODEL 8975398 protein-coding Slc30a5 solute carrier family 30 member 5 ENCODES a protein that exhibits cadmium ion transmembrane transporter activity (ortholog); zinc efflux transmembrane transporter activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN cobalt ion transport (ortholog); GPI anchor biosynthetic process (ortholog); intracellular zinc ion homeostasis (ortholog); ASSOCIATED WITH Bradycardia (ortholog); hypertrophic cardiomyopathy (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN apical plasma membrane (ortholog); endoplasmic reticulum membrane (ortholog); ER to Golgi transport vesicle membrane (ortholog) NW_004955446 158843 196275 - 102009893 AGCD01039930;AGCD01039931;GBBH01087914;XM_005392594;XM_013518421 XP_005392651;XP_013373875 MODEL 10088056 protein-coding Prr16 proline rich 16 INVOLVED IN positive regulation of cell size (ortholog); positive regulation of translation (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955408 40118918 40251144 + 106147119 AGCD01009120;AGCD01009121;AGCD01009122;AGCD01009123;AGCD01009124;AGCD01009125;GBDF01210195;GBDJ01048148;XM_013507054 XP_013362508 MODEL 8850074 ncrna LOC102019271 uncharacterized LOC102019271 NW_004955480 8712236 8827968 - 102019271 AGCD01056730;AGCD01056731;AGCD01056732;AGCD01056733;GBBH01073803;XR_001230895;XR_001230896;XR_001230897;XR_001230899;XR_263747 MODEL 8840785 protein-coding LOC102013216 uncharacterized LOC102013216 NW_004955438 14271926 14297748 + 102013216 AGCD01035336;AGCD01035337;GBDF01294416;XM_005390442 XP_005390499 MODEL 8998006 ncrna LOC102011177 uncharacterized LOC102011177 NW_004955408 10359375 10380970 - 102011177 AGCD01008267;AGCD01008268;GBDF01237961;XR_259677 MODEL 8714476 protein-coding Slc6a6 solute carrier family 6 member 6 ENCODES a protein that exhibits alanine transmembrane transporter activity (ortholog); amino acid transmembrane transporter activity (ortholog); amino acid:sodium symporter activity (ortholog); INVOLVED IN alanine transport (ortholog); amino acid import across plasma membrane (ortholog); beta-alanine transport (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); fundus dystrophy (ortholog); Hypertaurinuric Cardiomyopathy (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); dendrite (ortholog) NW_004955429 17097753 17130079 + 102004955 AGCD01028845;AGCD01028846;GBBH01032840;XM_005387062;XM_005387064 XP_005387119;XP_005387121 MODEL 8788406 protein-coding Tspan31 tetraspanin 31 ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); diffuse pediatric-type high-grade glioma, H3-wildtype and IDH-wildtype (ortholog) NW_004955458 5455012 5457912 + 102010452 AGCD01047493;GBDI01358535;XM_005397412 XP_005397469 MODEL 8959727 protein-coding Rad51b RAD51 paralog B ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); double-stranded DNA binding (ortholog); four-way junction DNA binding (ortholog); INVOLVED IN blastocyst growth (ortholog); double-strand break repair via homologous recombination (ortholog); in utero embryonic development (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH Breast Cancer, Familial (ortholog); Breast Neoplasms (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN Rad51B-Rad51C-Rad51D-XRCC2 complex (ortholog); replication fork (ortholog) NW_004955466 1686472 2388146 - 102006230 AGCD01050717;AGCD01050718;AGCD01050719;AGCD01050720;AGCD01050721;AGCD01050722;AGCD01050723;AGCD01050724;AGCD01050725;AGCD01050726;AGCD01050727;AGCD01050728;AGCD01050729;AGCD01050730;AGCD01050731;AGCD01050732;AGCD01050733;AGCD01050734;AGCD01050735;AGCD01050736;GBBH01025954;XM_005399051;XM_005399052;XM_013521905;XM_013521906;XM_013521907;XM_013521908;XM_013521909;XM_013521910;XM_013521912;XM_013521913;XM_013521914;XM_013521915;XM_013521916;XM_013521917;XR_001236784;XR_001236785;XR_001236786;XR_001236787;XR_001236788;XR_001236789;XR_001236790;XR_001236791 XP_005399108;XP_005399109;XP_013377359;XP_013377360;XP_013377361;XP_013377362;XP_013377363;XP_013377364;XP_013377366;XP_013377367;XP_013377368;XP_013377369;XP_013377370;XP_013377371 MODEL 8935685 protein-coding LOC102007062 S-phase kinase-associated protein 1-like NW_004955445 2496144 2496743 - 102007062 AGCD01039356;XM_005392261 XP_005392318 MODEL 8890908 protein-coding LOC102024496 zinc finger protein 709-like NW_004955432 4600161 4605984 + 102024496 AGCD01030730;AGCD01030731;GBDF01262659;XM_013515925 XP_013371379 MODEL 8965069 protein-coding Rbis ribosomal biogenesis factor INVOLVED IN ribosome biogenesis (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955417 3155852 3162925 - 102003236 AGCD01017905;GBCC01008391;XM_005381739 XP_005381796 MODEL 8780262 protein-coding Ripply1 ripply transcriptional repressor 1 INVOLVED IN bone morphogenesis (ortholog); Notch signaling pathway (ortholog); regulation of gene expression (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Charcot-Marie-Tooth disease type X (ortholog) NW_004955490 9167071 9172101 + 102021676 AGCD01060306;XM_005404707 XP_005404764 MODEL 9003366 protein-coding LOC102021746 leucine-rich repeat-containing protein 9 NW_004955466 9624286 9721243 - 102021746 AGCD01051047;AGCD01051048;AGCD01051049;AGCD01051050;AGCD01051051;GBDK01266613;XM_013522015 XP_013377469 MODEL 8812616 protein-coding LOC102008157 vomeronasal type-2 receptor 116-like NW_004955563 100634 120790 - 102008157 AGCD01074043;AGCD01074044;AGCD01074045;AGCD01074046;GBDF01162776;XM_013509122 XP_013364576 MODEL 8784868 protein-coding Wfdc3 WAP four-disulfide core domain 3 ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog) NW_004955445 11501044 11512109 + 102029675 AGCD01039697;AGCD01039698;GBDF01119525;XM_005392415;XM_005392416;XM_005392418;XM_013518337;XM_013518339 XP_005392472;XP_005392473;XP_005392475;XP_013373791;XP_013373793 MODEL 8904957 protein-coding Ssna1 SS nuclear autoantigen 1 ENCODES a protein that exhibits identical protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN axon arborization (ortholog); axon extension (ortholog); axonogenesis (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN axon (ortholog); axoneme (ortholog); centriole (ortholog) NW_004955513 5194308 5195721 + 102004413 AGCD01066961;GBCQ01066502;XM_005408581 XP_005408638 MODEL 39131377 protein-coding SMIM33 small integral membrane protein 33 8811617 protein-coding LOC102023452 40S ribosomal protein S27-like NW_004955465 9447585 9447842 - 102023452 AGCD01050492;XM_005398988 XP_005399045 MODEL 8705508 protein-coding Pcdh10 protocadherin 10 INVOLVED IN cell adhesion (ortholog); homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic membrane (ortholog) NW_004955428 9433478 9495260 - 102026240 AGCD01027836;AGCD01027837;GBDF01264237;XM_005386714;XM_005386716;XM_005386717;XR_261296;XR_261297 XP_005386771;XP_005386773;XP_005386774 MODEL 8894931 protein-coding Ppfibp1 PPFIA binding protein 1 INVOLVED IN cortical microtubule organization (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cell cortex (ortholog); plasma membrane (ortholog) NW_004955505 7191751 7394506 - 102021579 AGCD01065201;AGCD01065202;AGCD01065203;AGCD01065204;GBCQ01071728;XM_005407163;XM_005407168;XM_005407169;XM_013505927;XM_013505928;XM_013505929;XM_013505930;XM_013505931;XM_013505932;XM_013505933 XP_005407220;XP_005407225;XP_005407226;XP_013361381;XP_013361382;XP_013361383;XP_013361384;XP_013361385;XP_013361386;XP_013361387 MODEL 39132880 snorna SNORA73 Small nucleolar RNA SNORA73 family 9013490 protein-coding LOC102018787 uncharacterized LOC102018787 NW_004955450 3641318 3645239 + 102018787 AGCD01042439;GBDJ01361209;XM_005393575 XP_005393632 MODEL 8780599 protein-coding Lipi lipase I ENCODES a protein that exhibits heparin binding (ortholog); phospholipase activity (ortholog); INVOLVED IN lipid catabolic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Hypertriglyceridemia (ortholog); HYPERTRIGLYCERIDEMIA 1 (ortholog); FOUND IN extracellular space (ortholog); plasma membrane (ortholog) NW_004955407 16013285 16071187 - 102004244 AGCD01007202;AGCD01007203;AGCD01007204;AGCD01007205;GBDF01049474;GBDJ01190261;XM_013503778 XP_013359232 MODEL 8737297 protein-coding LOC102012822 sulfotransferase family cytosolic 2B member 1-like NW_004955804 1914 12609 + 102012822 AGCD01078378;AGCD01078379;GBCE01003625;XM_005415116 XP_005415173 MODEL 10135424 ncrna LOC106149918 uncharacterized LOC106149918 NW_004955457 611440 618723 - 106149918 AGCD01046712;XR_001236383 MODEL 8812103 protein-coding Sowahb sosondowah ankyrin repeat domain family member B NW_004955433 1537658 1541574 - 102015040 AGCD01031361;GBDI01052984;XM_005388187 XP_005388244 MODEL 8757276 ncrna LOC102005620 uncharacterized LOC102005620 NW_004955430 3876763 3953407 + 102005620 AGCD01029230;AGCD01029231;AGCD01029232;AGCD01029233;AGCD01029234;AGCD01029235;AGCD01029236;AGCD01029237;AGCD01029238;AGCD01029239;GBDF01177758;XR_001234564;XR_261415 MODEL 8977296 protein-coding Pgghg protein-glucosylgalactosylhydroxylysine glucosidase ENCODES a protein that exhibits protein-glucosylgalactosylhydroxylysine glucosidase activity (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); immunodeficiency 39 (ortholog); osteogenesis imperfecta (ortholog); FOUND IN cytosol (ortholog) NW_004955476 11749483 11754008 - 102027522 AGCD01055474;GBCE01030057;XM_013502909;XM_013502910;XM_013502911;XM_013502912;XM_013502913;XM_013502914 XP_013358363;XP_013358364;XP_013358365;XP_013358366;XP_013358367;XP_013358368 MODEL 8967431 protein-coding Epas1 endothelial PAS domain protein 1 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); cobalt ion binding (ortholog); DNA binding (ortholog); INVOLVED IN angiogenesis (ortholog); blood vessel remodeling (ortholog); cell differentiation (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH acute kidney failure (ortholog); azoospermia (ortholog); Brain Injuries (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955441 13244626 13328220 + 102011250 AGCD01037146;AGCD01037147;AGCD01037148;GBBH01002906;XM_005390973 XP_005391030 MODEL 8957487 ncrna LOC102019274 uncharacterized LOC102019274 NW_004955482 9786132 9790762 - 102019274 AGCD01057583;XR_263854 MODEL 8764888 protein-coding LOC102006696 olfactory receptor 1038-like NW_004955511 1584309 1585274 + 102006696 AGCD01066372;XM_005407966 XP_005408023 MODEL 8742333 protein-coding C1qtnf7 C1q and TNF related 7 ENCODES a protein that exhibits identical protein binding (ortholog); FOUND IN extracellular space (ortholog) NW_004955480 8546222 8644361 - 102018493 AGCD01056729;AGCD01056730;GBDJ01388679;XM_005402531;XM_005402532;XM_005402533 XP_005402588;XP_005402589;XP_005402590 MODEL 39133396 snrna U4 U4 spliceosomal RNA 9011629 protein-coding LOC102005621 olfactory receptor 5B3-like NW_004955511 3197583 3200113 - 102005621 AGCD01066448;XM_013506384 XP_013361838 MODEL 8935287 pseudo LOC102009717 cyclin-C-like NW_004955416 11195941 11196968 + 102009717 AGCD01017180;XR_260457 MODEL 9063495 protein-coding Pdlim7 PDZ and LIM domain 7 INVOLVED IN actin cytoskeleton organization (ortholog); positive regulation of osteoblast differentiation (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN actin cytoskeleton (ortholog); adherens junction (ortholog); cytoplasm (ortholog) NW_004955408 29718830 29734085 - 102028503 AGCD01008768;AGCD01008769;GBDI01008588;XM_005376443;XM_005376444;XM_005376445;XM_005376446;XM_013506529 XP_005376500;XP_005376501;XP_005376502;XP_005376503;XP_013361983 MODEL 8809823 pseudo LOC102010813 60S ribosomal protein L7-like 1 pseudogene NW_004955421 23607848 23608582 + 102010813 AGCD01022191 MODEL 8874428 protein-coding Rusf1 RUS family member 1 ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); familial renal glucosuria (ortholog); genetic disease (ortholog) NW_004955493 8329618 8341009 - 102008546 AGCD01061291;GBCE01000932;XM_005405326 XP_005405383 MODEL 8820164 pseudo LOC102003804 thyrotropin-releasing hormone receptor-like NW_004955541 2505471 2509425 - 102003804 AGCD01071413 MODEL 8986678 protein-coding Pacsin3 protein kinase C and casein kinase substrate in neurons 3 ENCODES a protein that exhibits calcium channel inhibitor activity (ortholog); cytoskeletal protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of calcium ion transport (ortholog); negative regulation of endocytosis (ortholog); plasma membrane tubulation (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIc (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955422 989605 995140 + 102028546 AGCD01022444;GBCE01077101;XM_005383998 XP_005384055 MODEL 8932453 pseudo LOC102015773 something about silencing protein 10-like NW_004955440 3836822 3839886 + 102015773 AGCD01036249 MODEL 8825298 trna Trnak-uuu transfer RNA lysine (anticodon UUU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978826 AGCD01006660;AGCD01022734;AGCD01040255;AGCD01042735;AGCD01050592;AGCD01050596;AGCD01050635;AGCD01051475;AGCD01054570;AGCD01066489;AGCD01066490 MODEL 8763213 protein-coding Prr19 proline rich 19 ASSOCIATED WITH Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog); FOUND IN chromosome (ortholog); nucleus (ortholog) NW_004955555 605333 610104 - 102024386 AGCD01073039;GBBH01137288;XM_005412367;XM_005412368;XM_005412369;XM_005412370;XM_005412371;XM_005412372 XP_005412424;XP_005412425;XP_005412426;XP_005412427;XP_005412428;XP_005412429 MODEL 8960217 protein-coding Ptdss2 phosphatidylserine synthase 2 ENCODES a protein that exhibits CDP-diacylglycerol-serine O-phosphatidyltransferase activity (ortholog); L-serine-phosphatidylethanolamine phosphatidyltransferase activity (ortholog); INVOLVED IN phosphatidylserine biosynthetic process (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955476 11554962 11585574 - 102022914 AGCD01055466;GBDJ01080587;XM_005401863;XM_013502927;XM_013502928;XM_013502929;XM_013502930;XM_013502931;XM_013502932 XP_005401920;XP_013358381;XP_013358382;XP_013358383;XP_013358384;XP_013358385;XP_013358386 MODEL 8896652 protein-coding LOC102018789 protocadherin alpha-10-like NW_004955611 330456 333750 - 102018789 AGCD01077163;XM_013510124 XP_013365578 MODEL 8796164 protein-coding LOC102013217 solute carrier family 22 member 1 NW_004955439 20691662 20716577 - 102013217 AGCD01036124;GBDI01310983;XM_005390705;XM_013517430 XP_005390762;XP_013372884 MODEL 8702178 ncrna LOC102003807 uncharacterized LOC102003807 NW_004955546 1036841 1042659 - 102003807 AGCD01072038;GBDF01208163;XR_264887 MODEL 9034745 protein-coding Plec plectin ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); ankyrin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); actomyosin contractile ring assembly actin filament organization (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular dysplasia 1 (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2Q (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); basal plasma membrane (ortholog) NW_004955454 2583138 2644308 - 102016445 AGCD01045025;AGCD01045026;GBCE01030252;XM_005395823;XM_005395824;XM_005395825;XM_005395826;XM_005395827;XM_005395828;XM_005395829;XM_005395830;XM_005395832;XM_013520104 XP_005395880;XP_005395881;XP_005395882;XP_005395883;XP_005395884;XP_005395885;XP_005395886;XP_005395887;XP_005395889;XP_013375558 MODEL 8977027 protein-coding LOC102015774 olfactory receptor 13A1 NW_004955546 2478051 2479302 - 102015774 AGCD01072092;XM_005411791;XM_013508416 XP_005411848;XP_013363870 MODEL 8780924 pseudo LOC102017663 nuclear receptor-binding factor 2 pseudogene NW_004955419 27290865 27292952 + 102017663 AGCD01020429 MODEL 8706988 protein-coding Pten phosphatase and tensin homolog ENCODES a protein that exhibits anaphase-promoting complex binding (ortholog); beta-catenin binding (ortholog); enzyme binding (ortholog); INVOLVED IN adult behavior (ortholog); angiogenesis (ortholog); apoptotic process (ortholog); PARTICIPATES IN altered phosphatidylinositol 3-kinase signaling pathway; altered phosphatidylinositol 3-kinase-Akt signaling pathway; endometrial cancer pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute megakaryocytic leukemia (ortholog); acute myocardial infarction (ortholog); FOUND IN apical plasma membrane (ortholog); cell projection (ortholog); cytoplasm (ortholog) NW_004955425 5007811 5091829 - 102026655 AGCD01025329;AGCD01025330;AGCD01025331;AGCD01025332;GBDJ01081006;XM_013514767 XP_013370221 MODEL 8889248 protein-coding Pggt1b protein geranylgeranyltransferase type I subunit beta ENCODES a protein that exhibits CAAX-protein geranylgeranyltransferase activity (ortholog); heterocyclic compound binding (ortholog); peptide binding (ortholog); INVOLVED IN positive regulation of cell cycle (ortholog); positive regulation of cell population proliferation (ortholog); protein geranylgeranylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN CAAX-protein geranylgeranyltransferase complex (ortholog) NW_004955408 34994545 35049037 - 102022470 AGCD01008927;AGCD01008928;AGCD01008929;GBDI01357863;XM_005376520 XP_005376577 MODEL 8955068 protein-coding Ndufaf2 NADH:ubiquinone oxidoreductase complex assembly factor 2 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN cilium assembly (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH Cockayne syndrome (ortholog); Cockayne syndrome A (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955446 7345467 7439885 - 102003186 AGCD01040112;AGCD01040113;GBDF01049272;XM_013518417;XM_013518418;XR_001235670;XR_001235671 XP_013373871;XP_013373872 MODEL 39133399 snrna U4 U4 spliceosomal RNA 9019007 ncrna LOC102021747 uncharacterized LOC102021747 NW_004955467 2672508 2696145 - 102021747 AGCD01051319;GBDF01160694;XR_001236840;XR_001236841 MODEL 10076501 protein-coding C1qtnf8 C1q and TNF related 8 INVOLVED IN positive regulation of cell motility (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog) NW_004955442 16159901 16162152 + 106149289 AGCD01037893;XM_013517653 XP_013373107 MODEL 8936878 protein-coding Trappc2l trafficking protein particle complex subunit 2L ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 4 (ortholog); Fanconi anemia (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); TRAPP complex (ortholog) NW_004955541 2711051 2715458 + 102005968 AGCD01071423;GBDF01224055;XM_005411023;XM_013507981 XP_005411080;XP_013363435 MODEL 8888036 protein-coding Pofut1 protein O-fucosyltransferase 1 ENCODES a protein that exhibits peptide-O-fucosyltransferase activity (ortholog); INVOLVED IN angiogenesis (ortholog); heart development (ortholog); nervous system development (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH Dowling-Degos disease (ortholog); Dowling-Degos Disease 2 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); membrane (ortholog) NW_004955422 28809901 28833186 - 102010377 AGCD01023370;AGCD01023371;GBCQ01062176;XM_005384876 XP_005384933 MODEL 8917369 protein-coding Sspn sarcospan ENCODES a protein that exhibits protein-containing complex binding (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Familial Natural Short Sleep 1 (ortholog); FOUND IN plasma membrane (ortholog); sarcolemma (ortholog); transport vesicle (ortholog) NW_004955413 21174242 21212813 + 102004591 AGCD01014247;AGCD01014248;GBCB01003015;XM_013511398 XP_013366852 MODEL 39131480 protein-coding SMIM35 small integral membrane protein 35 8813480 pseudo LOC102010817 60S ribosomal protein L9 pseudogene NW_004955424 4777949 4778494 + 102010817 AGCD01024365 MODEL 9014651 ncrna LOC102009719 uncharacterized LOC102009719 NW_004955482 6560784 6566698 + 102009719 AGCD01057403;GBDF01126264;XR_001230965 MODEL 39132883 snorna SNORA73 Small nucleolar RNA SNORA73 family 8933218 protein-coding Rev1 REV1 DNA directed polymerase ENCODES a protein that exhibits deoxycytidyl transferase activity (ortholog); INVOLVED IN DNA repair (ortholog); error-prone translesion synthesis (ortholog); response to UV (ortholog) NW_004955470 5677222 5738362 - 102013164 AGCD01052758;AGCD01052759;GBDJ01313280;XM_005400749;XM_005400750;XM_005400751 XP_005400806;XP_005400807;XP_005400808 MODEL 9035198 protein-coding Pycr3 pyrroline-5-carboxylate reductase 3 ENCODES a protein that exhibits pyrroline-5-carboxylate reductase activity (ortholog); INVOLVED IN L-proline biosynthetic process (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); FOUND IN cytosol (ortholog); intercellular bridge (ortholog); mitotic spindle (ortholog) NW_004955454 2305485 2311280 - 102007405 AGCD01045015;GBCB01101013;XM_005395787 XP_005395844 MODEL 9014656 protein-coding LOC102009720 olfactory receptor 2AJ1-like NW_004955418 30036459 30037427 - 102009720 AGCD01019499;XM_005382364 XP_005382421 MODEL 9059601 pseudo LOC102024497 translocation protein SEC62 pseudogene NW_004955518 4379872 4381320 + 102024497 AGCD01067828 MODEL 9033918 pseudo LOC102013218 spindle and kinetochore-associated protein 2-like NW_004955440 2553852 2554722 + 102013218 AGCD01036210 MODEL 9052930 protein-coding Ripply2 ripply transcriptional repressor 2 INVOLVED IN axis specification (ortholog); bone morphogenesis (ortholog); determination of left/right symmetry (ortholog); ASSOCIATED WITH Klippel-Feil syndrome 2 (ortholog); spondylocostal dysostosis (ortholog); spondylocostal dysostosis 1 (ortholog) NW_004955411 11418744 11422766 + 102016142 AGCD01011819;GBDK01103623;XM_005377933 XP_005377990 MODEL 8907098 protein-coding Wfdc5 WAP four-disulfide core domain 5 ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog) NW_004955445 12279799 12284819 + 102013123 AGCD01039749;GBDJ01360367;XM_005392453 XP_005392510 MODEL 8707197 protein-coding LOC102008559 olfactory receptor 1440-like NW_004955511 3846306 3866765 - 102008559 AGCD01066478;AGCD01066479;XM_013506388 XP_013361842 MODEL 8886087 protein-coding Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit INVOLVED IN DNA repair (ortholog); error-prone translesion synthesis (ortholog); ASSOCIATED WITH colon carcinoma (ortholog); genetic disease (ortholog); FOUND IN nucleolus (ortholog); zeta DNA polymerase complex (ortholog) NW_004955411 36068248 36246607 - 102029601 AGCD01012464;AGCD01012465;AGCD01012466;AGCD01012467;AGCD01012468;AGCD01012469;GBDK01092750;XM_005377901;XM_005377902;XM_005377904;XM_005377905;XM_013510833;XM_013510834 XP_005377958;XP_005377959;XP_005377961;XP_005377962;XP_013366287;XP_013366288 MODEL 39131378 protein-coding NDUFAF2 NADH:ubiquinone oxidoreductase complex assembly factor 2 8947979 protein-coding Pimreg PICALM interacting mitotic regulator ASSOCIATED WITH cone-rod dystrophy 5 (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955467 11967986 11972049 + 102006114 AGCD01051621;GBDF01160170;XM_013522225 XP_013377679 MODEL 8960200 protein-coding LOC102021748 putative olfactory receptor 10D4 NW_004955412 24699372 24700304 + 102021748 AGCD01013121;XM_005378634 XP_005378691 MODEL 9005202 protein-coding Wfdc8 WAP four-disulfide core domain 8 ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog) NW_004955445 11666987 11682180 + 102030679 AGCD01039712;XM_013518242 XP_013373696 MODEL 10294489 ncrna LOC106149919 uncharacterized LOC106149919 NW_004955457 8893976 8911353 - 106149919 AGCD01046920;AGCD01046921;GBDJ01352635;XR_001236394;XR_001236395;XR_001236396;XR_001236397 MODEL 8992459 ncrna LOC102012023 uncharacterized LOC102012023 NW_004955437 2178719 2183875 + 102012023 AGCD01034261;AGCD01034262;GBDF01160448;XR_001235086;XR_001235087;XR_001235088 MODEL 8777040 pseudo LOC102011616 transcription termination factor 2 pseudogene NW_004955403 54518608 54521373 - 102011616 AGCD01003099 MODEL 10301986 ncrna LOC106147085 uncharacterized LOC106147085 NW_004955517 1045333 1049530 + 106147085 AGCD01067588;GBCE01129533;XR_001231820 MODEL 8768556 protein-coding Slc6a7 solute carrier family 6 member 7 ENCODES a protein that exhibits L-proline transmembrane transporter activity (ortholog); proline:sodium symporter activity (ortholog); INVOLVED IN proline transmembrane transport (ortholog); proline transport (ortholog); protein catabolic process (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN glutamatergic synapse (ortholog); presynaptic membrane (ortholog); Schaffer collateral - CA1 synapse (ortholog) NW_004955415 4314090 4332659 - 102017863 AGCD01015968;GBDJ01406870;XM_005380583;XM_005380584 XP_005380640;XP_005380641 MODEL 8727354 protein-coding Sowahc sosondowah ankyrin repeat domain family member C NW_004955470 12699007 12702332 + 102007004 AGCD01052937;GBDF01250483;GBDK01218176;XM_013522810 XP_013378264 MODEL 39132828 snorna SNORA73 Small nucleolar RNA SNORA73 family 8836743 protein-coding LOC102007067 laminin subunit alpha-3-like NW_004955402 12016293 12019255 + 102007067 AGCD01000337;XM_005372709 XP_005372766 MODEL 10353116 ncrna LOC106149920 uncharacterized LOC106149920 NW_004955457 8966562 9000955 - 106149920 AGCD01046924;AGCD01046925;GBDF01305887;XR_001236398 MODEL 8720381 protein-coding LOC102006698 olfactory receptor 1020-like NW_004955511 682056 682990 + 102006698 AGCD01066337;XM_013506361 XP_013361815 MODEL 8992308 ncrna LOC102005624 uncharacterized LOC102005624 NW_004955518 1052939 1058556 - 102005624 AGCD01067755;GBDF01055606;XR_001231850;XR_264561;XR_264562 MODEL 8905494 protein-coding Tln2 talin 2 INVOLVED IN presynaptic actin cytoskeleton organization (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN fascia adherens (ortholog); presynapse (ortholog); synapse (ortholog) NW_004955450 12391049 12740232 - 102004540 AGCD01042701;AGCD01042702;AGCD01042703;AGCD01042704;AGCD01042705;AGCD01042706;AGCD01042707;AGCD01042708;GBCQ01035607;GBDJ01088994;XM_005393813 XP_005393870 MODEL 8713662 pseudo LOC102023454 ferritin heavy chain-like NW_004955466 10676155 10735470 - 102023454 AGCD01051071;AGCD01051072;AGCD01051073;XR_263303 MODEL 8833975 protein-coding Ripply3 ripply transcriptional repressor 3 INVOLVED IN cell population proliferation (ortholog); heart development (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); epilepsy (ortholog) NW_004955407 36101206 36108808 + 102018471 AGCD01007757;AGCD01007758;GBBH01010607;GBDK01324835;XM_013504657 XP_013360111 MODEL 8984108 protein-coding Pdp1 pyruvate dehydrogenase phosphatase catalytic subunit 1 ENCODES a protein that exhibits [pyruvate dehydrogenase (acetyl-transferring)]-phosphatase activity (ortholog); calcium ion binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN peptidyl-threonine dephosphorylation (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); Joubert syndrome 1 (ortholog); obesity (ortholog); FOUND IN mitochondrion (ortholog) NW_004955417 10219096 10227483 + 102022287 AGCD01018070;AGCD01018071;GBDF01053364;XM_005381799;XM_005381800;XM_005381801 XP_005381856;XP_005381857;XP_005381858 MODEL 8942984 ncrna LOC102011178 uncharacterized LOC102011178 NW_004955457 13088413 13091964 + 102011178 AGCD01047037;GBBH01088650;XR_262949 MODEL 8935083 protein-coding Pter phosphotriesterase related ENCODES a protein that exhibits N-acetyltaurine hydrolase activity (ortholog); INVOLVED IN epithelial cell differentiation (ortholog); regulation of appetite (ortholog); taurine metabolic process (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog); Liver Neoplasms (ortholog); FOUND IN cytosol (ortholog) NW_004955429 11296833 11356082 - 102030449 AGCD01028686;AGCD01028687;GBDK01220368;XM_005386971;XM_013515555;XM_013515556;XM_013515557 XP_005387028;XP_013371009;XP_013371010;XP_013371011 MODEL 8705121 protein-coding LOC102012823 inositol-3-phosphate synthase 1-like NW_004958180 30 610 + 102012823 AGCD01081576;GBBH01061916;XM_005415238 XP_005415295 MODEL 8927055 protein-coding Pcdh11x protocadherin 11 X-linked ASSOCIATED WITH Alzheimer's disease (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog) NW_004955525 2982220 3919729 + 102022631 AGCD01069115;AGCD01069116;AGCD01069117;AGCD01069118;AGCD01069119;AGCD01069120;AGCD01069121;AGCD01069122;AGCD01069123;AGCD01069124;AGCD01069125;AGCD01069126;AGCD01069127;AGCD01069128;AGCD01069129;AGCD01069130;AGCD01069131;AGCD01069132;AGCD01069133;AGCD01069134;AGCD01069135;AGCD01069136;AGCD01069137;AGCD01069138;AGCD01069139;AGCD01069140;AGCD01069141;AGCD01069142;AGCD01069143;AGCD01069144;AGCD01069145;AGCD01069146;AGCD01069147;AGCD01069148;AGCD01069149;AGCD01069150;AGCD01069151;AGCD01069152;AGCD01069153;AGCD01069154;AGCD01069155;AGCD01069156;AGCD01069157;AGCD01069158;AGCD01069159;AGCD01069160;AGCD01069161;AGCD01069162;AGCD01069163;AGCD01069164;GBDJ01223652;XM_013507344 XP_013362798 MODEL 8782306 protein-coding Lipj lipase family member J ASSOCIATED WITH autoimmune lymphoproliferative syndrome (ortholog); end stage renal disease (ortholog); PTEN hamartoma tumor syndrome (ortholog) NW_004955425 4337718 4368577 - 102023497 AGCD01025312;GBDF01225245;XM_005385874;XM_005385875;XM_013514896;XM_013514897;XM_013514898;XM_013514899;XM_013514900 XP_005385931;XP_005385932;XP_013370350;XP_013370351;XP_013370352;XP_013370353;XP_013370354 MODEL 9014511 protein-coding Ruvbl1 RuvB like AAA ATPase 1 ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); ADP binding (ortholog); ATP binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); positive regulation of DNA repair (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH alkaptonuria (ortholog); Common Variable Immunodeficiency 15 (ortholog); genetic disease (ortholog); FOUND IN ciliary basal body (ortholog); cytosol (ortholog); Ino80 complex (ortholog) NW_004955429 15598465 15632290 + 102026554 AGCD01028810;AGCD01028811;GBDF01010843;XM_005387045 XP_005387102 MODEL 39131576 protein-coding SMIM36 small integral membrane protein 36 8893738 protein-coding Tspan32 tetraspanin 32 INVOLVED IN blood coagulation (ortholog); cytoskeleton organization (ortholog); defense response to protozoan (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN cell surface (ortholog); integrin alphaIIb-beta3 complex (ortholog) NW_004955422 14101833 14121784 + 102008544 AGCD01022852;GBDK01393243;XM_005384201;XM_005384202 XP_005384258;XP_005384259 MODEL 8788629 pseudo LOC102018791 zinc finger and BTB domain-containing protein 16-like NW_004955670 20782 22615 - 102018791 AGCD01077935 MODEL 8987205 pseudo LOC102021750 40S ribosomal protein S15a pseudogene NW_004955469 6142084 6142956 + 102021750 AGCD01052365 MODEL 8855346 protein-coding LOC102010819 lariat debranching enzyme NW_004955501 832433 846485 + 102010819 AGCD01064041;AGCD01064042;GBDF01305392;XM_005406750 XP_005406807 MODEL 39131387 protein-coding WFDC8 WAP four-disulfide core domain 8 8919708 protein-coding LOC102012027 uncharacterized LOC102012027 NW_004955438 16193937 16196191 - 102012027 AGCD01035397;GBDI01015943;XM_013517279 XP_013372733 MODEL 8717592 protein-coding Slc30a6 solute carrier family 30 member 6 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); zinc:proton antiporter activity (ortholog); INVOLVED IN Golgi to endosome transport (ortholog); regulation of zinc ion transport (ortholog); zinc ion import into Golgi lumen (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Autoinflammation with Infantile Enterocolitis (ortholog); familial cold autoinflammatory syndrome 4 (ortholog); FOUND IN Golgi apparatus (ortholog); trans-Golgi network membrane (ortholog) NW_004955441 528256 567382 + 102021600 AGCD01036710;AGCD01036711;AGCD01036712;GBDF01128354;XM_005390837;XM_013517595 XP_005390894;XP_013373049 MODEL 8816883 protein-coding Epb41 erythrocyte membrane protein band 4.1 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); actin binding (ortholog); phosphoprotein binding (ortholog); INVOLVED IN positive regulation of protein localization to cell cortex (ortholog); protein-containing complex assembly (ortholog); regulation of calcium ion transport (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH Elliptocytosis 1 (ortholog); genetic disease (ortholog); hemolytic anemia (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell cortex (ortholog); cell junction (ortholog) NW_004955452 7930095 8123165 + 102021512 AGCD01044202;AGCD01044203;AGCD01044204;AGCD01044205;AGCD01044206;AGCD01044207;AGCD01044208;AGCD01044209;GBBH01033044;XM_005394970;XM_013519473;XM_013519474;XM_013519475;XM_013519476;XM_013519477;XM_013519478 XP_005395027;XP_013374927;XP_013374928;XP_013374929;XP_013374930;XP_013374931;XP_013374932 MODEL 8947834 protein-coding Sf3b1 splicing factor 3b subunit 1 ENCODES a protein that exhibits chromatin binding (ortholog); RNA binding (ortholog); splicing factor binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); blastocyst formation (ortholog); mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); chronic myelogenous leukemia, BCR-ABL1 positive (ortholog); FOUND IN B-WICH complex (ortholog); catalytic step 2 spliceosome (ortholog); chromatin (ortholog) NW_004955403 3134960 3163395 + 102025074 AGCD01001754;GBCC01000595;XM_005373873 XP_005373930 MODEL 8854636 protein-coding LOC102015779 sialic acid-binding Ig-like lectin 5 NW_004955558 1125684 1129673 - 102015779 AGCD01073417;GBBH01003390;GBDK01081187;XM_013508886 XP_013364340 MODEL 8768942 protein-coding Sowahd sosondowah ankyrin repeat domain family member D ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); COVID-19 (ortholog) NW_004955534 220999 222550 - 102008980 AGCD01070441;GBBH01135014;XM_005410434 XP_005410491 MODEL 8940884 pseudo LOC102017664 HAUS augmin-like complex subunit 2 pseudogene NW_004955419 29773998 29774848 - 102017664 AGCD01020502 MODEL 8905108 protein-coding LOC102013220 olfactory receptor 4N5 NW_004955550 102932 103858 - 102013220 AGCD01072481;XM_005412027 XP_005412084 MODEL 39133401 snrna U4 U4 spliceosomal RNA 8830696 pseudo LOC102012028 pre-mRNA 3' end processing protein WDR33 pseudogene NW_004955439 20471999 20472958 - 102012028 AGCD01036114 MODEL 8706351 ncrna LOC102005629 uncharacterized LOC102005629 NW_004955526 3115354 3136784 + 102005629 AGCD01069328;XR_264659 MODEL 9018476 trna Trnal-aag transfer RNA leucine (anticodon AAG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955493;NW_004955465;NW_004955550;NW_004955550 931996;13766471;1486047;1410172 932077;13766552;1486128;1410253 +;-;-;+ 101978790 AGCD01050622;AGCD01060872;AGCD01072566;AGCD01072577 MODEL 8921322 protein-coding Pofut2 protein O-fucosyltransferase 2 ENCODES a protein that exhibits fucosyltransferase activity (ortholog); peptide-O-fucosyltransferase activity (ortholog); INVOLVED IN fucosylation (ortholog); mesoderm formation (ortholog); positive regulation of protein folding (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); cataract 9 multiple types (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955407 41972833 41984095 - 102012501 AGCD01007884;GBCQ01098842;XM_005375911 XP_005375968 MODEL 8883750 pseudo LOC102008560 cell division control protein 42 homolog pseudogene NW_004955430 16590042 16591833 - 102008560 AGCD01029642 MODEL 8980039 protein-coding Sspo SCO-spondin PARTICIPATES IN Hedgehog signaling pathway; mTOR signaling pathway; Notch signaling pathway; FOUND IN cytoplasm (ortholog) NW_004955491 4840657 4889060 + 102016717 AGCD01060464;AGCD01060465;GBDK01109654;XM_005404761 XP_005404818 MODEL 8798244 protein-coding Ndufaf3 NADH:ubiquinone oxidoreductase complex assembly factor 3 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); carnitine-acylcarnitine translocase deficiency (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955532 1045854 1046738 + 102007054 AGCD01070164;GBBH01035419;GBDI01069498;XM_013507583 XP_013363037 MODEL 8739736 protein-coding Prr22 proline rich 22 NW_004955495 3660380 3662642 + 102022615 AGCD01061874;GBDJ01128662;XM_005405753;XM_013505196 XP_005405810;XP_013360650 MODEL 9007323 protein-coding Lipk lipase family member K ASSOCIATED WITH autoimmune lymphoproliferative syndrome (ortholog); PTEN hamartoma tumor syndrome (ortholog) NW_004955425 4215214 4247584 - 102021147 AGCD01025310;GBCC01021426;XM_005385864;XM_005385865;XM_005385866;XM_005385868;XM_013514918;XM_013514919 XP_005385921;XP_005385922;XP_005385923;XP_005385925;XP_013370372;XP_013370373 MODEL 8982136 protein-coding Ssr1 signal sequence receptor subunit 1 FOUND IN endoplasmic reticulum (ortholog) NW_004955465 6540509 6557402 + 102029059 AGCD01050444;AGCD01050445;GBDF01043529;XM_005398857;XM_005398858 XP_005398914;XP_005398915 MODEL 8863517 pseudo LOC102023840 syntaxin-12 pseudogene NW_004955524 561800 563436 - 102023840 AGCD01068683;AGCD01068684 MODEL 8993397 protein-coding Tspan33 tetraspanin 33 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN pore complex assembly (ortholog); protein localization to plasma membrane (ortholog); protein maturation (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog); pore complex (ortholog) NW_004955479 9920192 9941395 + 102007766 AGCD01056508;AGCD01056509;GBCQ01004646;XM_005402406;XM_005402407 XP_005402463;XP_005402464 MODEL 8822421 protein-coding Ppfibp2 PPFIA binding protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Familial Prostate Cancer (ortholog); Prostatic Neoplasms (ortholog); FOUND IN presynapse (ortholog) NW_004955414 23269050 23418804 + 102007883 AGCD01015496;AGCD01015497;GBDF01003858;XM_005380195;XM_005380196;XM_005380198;XM_013511943;XM_013511944;XM_013511945;XM_013511946;XM_013511948;XM_013511949;XM_013511950;XM_013511951;XM_013511952;XM_013511953 XP_005380252;XP_005380253;XP_005380255;XP_013367397;XP_013367398;XP_013367399;XP_013367400;XP_013367402;XP_013367403;XP_013367404;XP_013367405;XP_013367406;XP_013367407 MODEL 10289397 ncrna LOC106149921 uncharacterized LOC106149921 NW_004955457 9000284 9008289 + 106149921 AGCD01046925;GBDJ01393429;XR_001236399 MODEL 8964043 protein-coding Slc30a7 solute carrier family 30 member 7 ENCODES a protein that exhibits identical protein binding (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN intracellular zinc ion homeostasis (ortholog); zinc ion import into Golgi lumen (ortholog); zinc ion transport (ortholog); ASSOCIATED WITH Esophageal Neoplasms (ortholog); Hypogonadism and Testicular Atrophy (ortholog); maple syrup urine disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); Golgi apparatus (ortholog) NW_004955435 5530591 5609613 + 102007585 AGCD01032891;AGCD01032892;GBBH01036681;XM_005388805 XP_005388862 MODEL 8797768 ncrna LOC102015781 uncharacterized LOC102015781 NW_004955443 15377430 15386722 + 102015781 AGCD01038538;GBDF01225293;XR_262208 MODEL 8782305 pseudo LOC102023455 peroxiredoxin-6-like NW_004955466 13303704 13320547 + 102023455 AGCD01051156 MODEL 8872090 protein-coding LOC102008968 olfactory receptor-like protein OLF2 NW_004955511 826804 827742 + 102008968 AGCD01066344;XM_005408212 XP_005408269 MODEL 9007772 protein-coding Rex1bd required for excision 1-B domain containing ASSOCIATED WITH Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog) NW_004955524 3003820 3005677 - 102009210 AGCD01068848;GBCE01001434;GBDJ01073176;XM_013507290 XP_013362744 MODEL 8943694 ncrna LOC102013232 uncharacterized LOC102013232 NW_004955449 2499555 2513694 - 102013232 AGCD01041828;GBDF01307257;XR_262485 MODEL 9026647 protein-coding Epb41l1 erythrocyte membrane protein band 4.1 like 1 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN regulation of exocytic insertion of neurotransmitter receptor to postsynaptic membrane (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 11 (ortholog); intellectual disability (ortholog); FOUND IN parallel fiber to Purkinje cell synapse (ortholog); plasma membrane (ortholog); postsynapse (ortholog) NW_004955422 25338135 25456376 - 102028431 AGCD01023248;AGCD01023249;AGCD01023250;GBCE01186960;XM_005384755;XM_005384756;XM_005384758;XM_005384760;XM_013514214;XM_013514215;XM_013514216 XP_005384812;XP_005384813;XP_005384815;XP_005384817;XP_013369668;XP_013369669;XP_013369670 MODEL 8828295 protein-coding Rad51c RAD51 paralog C ENCODES a protein that exhibits crossover junction DNA endonuclease activity (ortholog); four-way junction DNA binding (ortholog); INVOLVED IN DNA recombination (ortholog); DNA repair (ortholog); double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); breast carcinoma (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955451 4053195 4178226 - 102017412 AGCD01043089;AGCD01043090;AGCD01043091;AGCD01043092;AGCD01043093;AGCD01043094;AGCD01043095;AGCD01043096;GBDF01190598;XM_005393995;XM_005393996;XM_005393997;XM_013519222;XM_013519223;XR_001235967 XP_005394052;XP_005394053;XP_005394054;XP_013374676;XP_013374677 MODEL 8771718 ncrna LOC102005636 uncharacterized LOC102005636 NW_004955542 148238 153369 + 102005636 AGCD01071458;AGCD01071459;GBDF01025206;XR_264850 MODEL 8935392 protein-coding LOC102019275 histone H2A type 1 NW_004955483 901347 913474 - 102019275 AGCD01057637;GBCQ01010632;XM_005403303;XM_005403304 XP_005403360;XP_005403361 MODEL 9030452 protein-coding Rit1 Ras like without CAAX 1 ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN Ras protein signal transduction (ortholog); ASSOCIATED WITH brain disease (ortholog); cardiofaciocutaneous syndrome (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955545 2089530 2099404 - 102011362 AGCD01071884;GBDK01092159;XM_005411618;XM_005411619;XM_005411622 XP_005411675;XP_005411676;XP_005411679 MODEL 8825629 protein-coding LOC102008160 zinc finger protein 709-like NW_004955569 1635173 1644301 + 102008160 AGCD01074673;GBDF01011195;XM_005413505 XP_005413562 MODEL 9029843 protein-coding Rbks ribokinase ENCODES a protein that exhibits identical protein binding (ortholog); ribokinase activity (ortholog); INVOLVED IN pentose-phosphate shunt (ortholog); PARTICIPATES IN pentose phosphate pathway; ribose 5-phosphate isomerase deficiency pathway; transaldolase deficiency pathway; ASSOCIATED WITH Tatton-Brown-Rahman syndrome (ortholog) NW_004955469 9734551 9831397 - 102010685 AGCD01052516;AGCD01052517;GBDF01085787;XM_005400521;XM_013522606;XM_013522607;XR_001236972 XP_005400578;XP_013378060;XP_013378061 MODEL 8754107 protein-coding Pygb glycogen phosphorylase B ENCODES a protein that exhibits carbohydrate binding (ortholog); glycogen phosphorylase activity (ortholog); identical protein binding (ortholog); INVOLVED IN glycogen catabolic process (ortholog); glycogen metabolic process (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Dwarfism (ortholog); Myocardial Ischemia (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog) NW_004955415 31254240 31283651 + 102011761 AGCD01016672;GBBH01062054;XM_005380992 XP_005381049 MODEL 9013610 pseudo LOC102021752 histone acetyltransferase type B catalytic subunit pseudogene NW_004955471 1960041 1961237 - 102021752 AGCD01052994 MODEL 8956205 protein-coding Ruvbl2 RuvB like AAA ATPase 2 ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN cellular response to estradiol stimulus (ortholog); cellular response to UV (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH progressive familial heart block type IB (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955559 1657241 1674272 - 102026269 AGCD01073658;AGCD01073659;GBDF01009024;XM_005412916 XP_005412973 MODEL 8981138 protein-coding Plek pleckstrin ENCODES a protein that exhibits phosphatase activator activity (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cell projection organization (ortholog); cortical actin cytoskeleton organization (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 58 (ortholog); Experimental Liver Cirrhosis (ortholog); osteoporosis (ortholog); FOUND IN cytoplasm (ortholog); ruffle membrane (ortholog) NW_004955424 16494052 16524790 - 102022101 AGCD01024743;AGCD01024744;GBDK01147367;XM_005385668 XP_005385725 MODEL 8979961 protein-coding Slc6a8 solute carrier family 6 member 8 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); creatine transmembrane transporter activity (ortholog); creatine:sodium symporter activity (ortholog); INVOLVED IN creatine transmembrane transport (ortholog); embryonic brain development (ortholog); nitrogen compound transport (ortholog); PARTICIPATES IN creatine metabolic pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN apical plasma membrane (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955580 419696 426727 + 102013885 AGCD01075606;GBCB01006312;GBDI01117556;XM_005414132 XP_005414189 MODEL 8931908 pseudo LOC102006699 acyl-protein thioesterase 1 pseudogene NW_004955430 12369664 12370317 + 102006699 AGCD01029499 MODEL 39131448 protein-coding WFDC9 WAP four-disulfide core domain 9 8935413 protein-coding Ndufaf4 NADH:ubiquinone oxidoreductase complex assembly factor 4 INVOLVED IN defense response to virus (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); NADH dehydrogenase complex assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); mitochondrial complex I deficiency (ortholog); nuclear type mitochondrial complex I deficiency 1 (ortholog); FOUND IN cytosol (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955411 22878031 22882723 - 102019785 AGCD01012099;GBDI01324089;XM_005377790 XP_005377847 MODEL 9023657 pseudo LOC102017668 zinc finger and BTB domain-containing protein 44 pseudogene NW_004955420 24964791 24968106 - 102017668 AGCD01021339 MODEL 8979294 protein-coding Ssr2 signal sequence receptor subunit 2 INVOLVED IN in utero embryonic development (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog) NW_004955545 2205906 2213780 - 102013874 AGCD01071888;GBCE01002063;XM_005411628;XM_013508268 XP_005411685;XP_013363722 MODEL 9026612 protein-coding Pdp2 pyruvate dehyrogenase phosphatase catalytic subunit 2 ENCODES a protein that exhibits [pyruvate dehydrogenase (acetyl-transferring)]-phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN peptidyl-threonine dephosphorylation (ortholog); response to starvation (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); cataract 5 multiple types (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN mitochondrion (ortholog) NW_004955433 23392193 23396229 + 102024498 AGCD01031959;GBCQ01062937;XM_005388477;XM_005388478;XM_005388479;XM_005388480 XP_005388534;XP_005388535;XP_005388536;XP_005388537 MODEL 10103369 ncrna LOC106149922 uncharacterized LOC106149922 NW_004955406 12451365 12453416 - 106149922 AGCD01005919;GBDF01009943;XR_001236400 MODEL 8762189 protein-coding LOC102012824 cytochrome c oxidase subunit 6B1-like NW_004955452 216986 217314 - 102012824 AGCD01043804;XM_005394661 XP_005394718 MODEL 8898079 pseudo LOC102011619 60S ribosomal protein L6-like NW_004955405 15379752 15381035 + 102011619 AGCD01004944 MODEL 8903922 ncrna LOC102008561 uncharacterized LOC102008561 NW_004955432 20882075 20884968 - 102008561 AGCD01031209;AGCD01031210;XR_261538 MODEL 39132829 snorna SNORA73 Small nucleolar RNA SNORA73 family 8758783 ncrna LOC102007069 uncharacterized LOC102007069 NW_004955402 22117994 22162557 - 102007069 AGCD01000599;AGCD01000600;AGCD01000601;AGCD01000602;GBBH01029920;XR_259062 MODEL 8912072 pseudo LOC102018795 aldose reductase-related protein 2 pseudogene NW_004955404 10139110 10140052 + 102018795 AGCD01003376 MODEL 8878648 protein-coding LOC102009721 chromosome unknown open reading frame, human C6orf62 NW_004955483 2346246 2358156 + 102009721 AGCD01057674;AGCD01057675;GBDF01209925;XM_005403364;XM_005403365 XP_005403421;XP_005403422 MODEL 9033653 protein-coding LOC102005637 cytochrome c oxidase subunit 8C, mitochondrial ASSOCIATED WITH achondrogenesis type IA (ortholog); DICER1 syndrome (ortholog); pleuropulmonary blastoma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955438 15480509 15481812 + 102005637 AGCD01035370;GBDF01049097;XM_005390345 XP_005390402 MODEL 8996451 ncrna LOC102012834 uncharacterized LOC102012834 NW_004955409 11180475 11194137 + 102012834 AGCD01009500;AGCD01009501;GBBH01138314;XR_001232647;XR_001232648 MODEL 9029465 ncrna LOC102010821 uncharacterized LOC102010821 NW_004955505 3545137 3556925 + 102010821 AGCD01065031;GBBH01131759;XR_264306 MODEL 8850080 pseudo LOC102019280 protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 pseudogene NW_004955420 1690583 1691948 - 102019280 AGCD01020576 MODEL 8762354 protein-coding Pgk1 phosphoglycerate kinase 1 ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); phosphoglycerate kinase activity (ortholog); INVOLVED IN canonical glycolysis (ortholog); cellular response to hypoxia (ortholog); epithelial cell differentiation (ortholog); PARTICIPATES IN gluconeogenesis pathway; glycolysis pathway; hypoxia inducible factor pathway; ASSOCIATED WITH alpha thalassemia-X-linked intellectual disability syndrome (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytosol (ortholog); extracellular space (ortholog); membrane raft (ortholog) NW_004955557 1566534 1584799 + 102021398 AGCD01073300;GBDJ01005368;XM_005412630 XP_005412687 MODEL 8998739 protein-coding LOC102008162 uncharacterized protein KIAA1211 NW_004955447 14674162 14715780 - 102008162 AGCD01041019;AGCD01041020;GBBH01097866;GBDI01055287;XM_013518481 XP_013373935 MODEL 8782082 protein-coding C1r complement C1r ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); molecular sequestering activity (ortholog); INVOLVED IN zymogen activation (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); Ehlers-Danlos syndrome (ortholog); Ehlers-Danlos syndrome periodontal type 1 (ortholog); FOUND IN extracellular space (ortholog) NW_004955413 4652156 4660897 - 102011752 AGCD01013623;GBCE01007078;XM_005378856 XP_005378913 MODEL 8762388 pseudo LOC102021755 ras-related protein Rab-5A pseudogene NW_004955475 1653809 1654446 + 102021755 AGCD01054757 MODEL 9027147 pseudo LOC102006703 cyclin-O pseudogene NW_004955515 1305213 1307829 + 102006703 AGCD01067223 MODEL 8982640 protein-coding Tlnrd1 talin rod domain containing 1 ENCODES a protein that exhibits actin binding (ortholog); identical protein binding (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); long QT syndrome (ortholog); FOUND IN stress fiber (ortholog) NW_004955416 11739879 11742381 + 102021877 AGCD01017190;AGCD01017191;GBBH01207356;GBDK01234268;XM_005381439 XP_005381496 MODEL 8852726 protein-coding Ptf1a pancreas associated transcription factor 1a ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); cell fate commitment (ortholog); central nervous system neuron differentiation (ortholog); ASSOCIATED WITH cerebellar disease (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Decreased Urinary Activity of Kallikrein (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955429 5807804 5809522 - 102011348 AGCD01028536;AGCD01028537;GBDF01208599;XM_005387232 XP_005387289 MODEL 8750099 protein-coding Pcdh12 protocadherin 12 INVOLVED IN calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); glycogen metabolic process (ortholog); homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); ASSOCIATED WITH Coats disease (ortholog); Diencephalic-Mesencephalic Junction Dysplasia Syndrome 1 (ortholog); Diencephalic-Mesencephalic Junction Dysplasia Syndromes (ortholog); FOUND IN cell-cell junction (ortholog) NW_004955415 11834007 11848032 + 102029505 AGCD01016178;GBDK01281483;XM_005380715 XP_005380772 MODEL 39131426 protein-coding SMIM39 small integral membrane protein 39 10127659 pseudo LOC106147086 zinc finger protein 583-like NW_004955517 510840 513782 + 106147086 AGCD01067578 MODEL 8742618 protein-coding Pogk pogo transposable element derived with KRAB domain ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955462 10075834 10089954 - 102028390 AGCD01049351;AGCD01049352;GBBH01101820;GBBH01101821;XM_005398238 XP_005398295 MODEL 9066282 protein-coding LOC102017670 zinc finger protein 709-like NW_004955421 8318637 8347417 - 102017670 AGCD01021806;AGCD01021807;GBDI01254648;XM_013513784;XM_013513785;XM_013513786;XM_013513787 XP_013369238;XP_013369239;XP_013369240;XP_013369241 MODEL 8712939 protein-coding Ssr3 signal sequence receptor subunit 3 ASSOCIATED WITH basal cell carcinoma (ortholog); congenital disorder of glycosylation (ortholog) NW_004955448 7554303 7569022 - 102019340 AGCD01041414;AGCD01041415;AGCD01041416;GBCE01031602;XM_005393079 XP_005393136 MODEL 8762799 protein-coding LOC102008562 carboxylesterase 1D-like NW_004955433 13405185 13440775 - 102008562 AGCD01031690;GBDJ01424046;XM_005388329;XM_005388330 XP_005388386;XP_005388387 MODEL 8925112 protein-coding Pdpk1 3-phosphoinositide dependent protein kinase 1 ENCODES a protein that exhibits 3-phosphoinositide-dependent protein kinase activity (ortholog); insulin receptor binding (ortholog); phospholipase activator activity (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); cell migration (ortholog); cellular response to brain-derived neurotrophic factor stimulus (ortholog); PARTICIPATES IN adenosine signaling pathway; angiotensin II signaling pathway; FasL mediated signaling pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); congestive heart failure (ortholog); developmental and epileptic encephalopathy 1 (ortholog); FOUND IN cell projection (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955442 14685089 14772870 - 102020615 AGCD01037832;AGCD01037833;AGCD01037834;AGCD01037835;AGCD01037836;AGCD01037837;AGCD01037838;AGCD01037839;GBCB01023925;XM_005391417;XM_005391418;XM_005391419;XM_005391420;XM_013517782;XM_013517783 XP_005391474;XP_005391475;XP_005391476;XP_005391477;XP_013373236;XP_013373237 MODEL 8737937 ncrna LOC102005638 uncharacterized LOC102005638 NW_004955439 17644083 17645810 + 102005638 AGCD01036042;GBDF01110804;XR_001235185;XR_261994 MODEL 8752163 protein-coding Syt17 synaptotagmin 17 INVOLVED IN positive regulation of dendrite extension (ortholog); regulation of postsynaptic neurotransmitter receptor internalization (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog); trans-Golgi network (ortholog) NW_004955442 2843143 2921627 - 102004205 AGCD01037482;AGCD01037483;AGCD01037484;AGCD01037485;AGCD01037486;GBCE01114097;GBCQ01058207;XM_005391093 XP_005391150 MODEL 9032743 protein-coding Rwdd1 RWD domain containing 1 INVOLVED IN androgen receptor signaling pathway (ortholog); cellular response to oxidative stress (ortholog); cellular response to testosterone stimulus (ortholog); ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog) NW_004955526 94518 120421 - 102027449 AGCD01069210;AGCD01069211;AGCD01069212;GBDJ01131321;XM_005409748 XP_005409805 MODEL 9011050 pseudo LOC102011180 multifunctional protein ADE2-like NW_004955458 11807530 11818009 - 102011180 AGCD01047760 MODEL 9005419 protein-coding Pgk2 phosphoglycerate kinase 2 ENCODES a protein that exhibits phosphoglycerate kinase activity (ortholog); INVOLVED IN flagellated sperm motility (ortholog); glycolytic process (ortholog); FOUND IN cilium (ortholog); sperm fibrous sheath (ortholog) NW_004955411 8216432 8218065 + 102005682 AGCD01011720;GBDF01002336;XM_005377668 XP_005377725 MODEL 8870043 protein-coding Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 ENCODES a protein that exhibits beta-catenin binding (ortholog); cis-trans isomerase activity (ortholog); cytoskeletal motor activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); microtubule polymerization (ortholog); negative regulation of amyloid-beta formation (ortholog); PARTICIPATES IN altered p53 signaling pathway; p53 signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); asthma (ortholog); autistic disorder (ortholog); FOUND IN ciliary basal body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955495 1250557 1261617 + 102025700 AGCD01061678;GBDF01008372;XM_005405574;XM_013505361 XP_005405631;XP_013360815 MODEL 9004427 ncrna LOC102003811 uncharacterized LOC102003811 NW_004955442 15113086 15113646 + 102003811 AGCD01037859;GBBH01035320;XR_262150 MODEL 8812503 protein-coding Pphln1 periphilin 1 INVOLVED IN constitutive heterochromatin formation (ortholog); negative regulation of gene expression, epigenetic (ortholog); protein localization to heterochromatin (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); nucleoplasm (ortholog) NW_004955500 1744968 1892056 + 102003041 AGCD01063681;AGCD01063682;AGCD01063683;AGCD01063684;AGCD01063685;AGCD01063686;AGCD01063687;AGCD01063688;GBBH01140452;GBDF01047222;XM_013505665;XM_013505666;XM_013505667;XM_013505668;XM_013505670;XM_013505671 XP_013361119;XP_013361120;XP_013361121;XP_013361122;XP_013361124;XP_013361125 MODEL 8890214 protein-coding Slc30a8 solute carrier family 30 member 8 ENCODES a protein that exhibits protein homodimerization activity (ortholog); zinc ion transmembrane transporter activity (ortholog); zinc:proton antiporter activity (ortholog); INVOLVED IN glucose homeostasis (ortholog); insulin processing (ortholog); insulin secretion (ortholog); ASSOCIATED WITH hereditary multiple exostoses (ortholog); maturity-onset diabetes of the young type 1 (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN cytoplasmic vesicle (ortholog); Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955417 23207146 23239170 + 102030631 AGCD01018434;GBDF01144404;XM_013512711 XP_013368165 MODEL 9044426 protein-coding C1rl complement C1r subcomponent like ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); Ehlers-Danlos syndrome periodontal type 1 (ortholog); Ehlers-Danlos syndrome periodontal type 2 (ortholog); FOUND IN extracellular space (ortholog) NW_004955413 4663643 4670454 - 102012081 AGCD01013623;GBDI01312342;XM_005378857;XM_005378858 XP_005378914;XP_005378915 MODEL 8967078 protein-coding Rexo1 RNA exonuclease 1 homolog ASSOCIATED WITH cyclic hematopoiesis (ortholog); Neurodevelopmental Disorders (ortholog); polycystic ovary syndrome (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog) NW_004955495 6194380 6219907 + 102025594 AGCD01062056;AGCD01062057;GBDF01010614;XM_005405946 XP_005406003 MODEL 10383557 ncrna LOC106149923 uncharacterized LOC106149923 NW_004955457 10005195 10025117 + 106149923 AGCD01046947;XR_001236402;XR_001236403 MODEL 9017209 protein-coding LOC102013233 late cornified envelope protein 1A NW_004955592 591385 593007 - 102013233 AGCD01076319;GBCE01061985;XM_005414620 XP_005414677 MODEL 9060906 protein-coding Smim4 small integral membrane protein 4 ENCODES a protein that exhibits mitochondrial ribosome binding (ortholog); INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); mitochondrial respiratory chain complex III assembly (ortholog); ASSOCIATED WITH congenital disorder of glycosylation In (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004956313 1988 5240 + 102016773 AGCD01079416;GBDI01135702;XM_005415191 XP_005415248 MODEL 8876350 pseudo LOC102007072 60S ribosomal protein L5-like NW_004955450 3079256 3080465 - 102007072 AGCD01042421 MODEL 8936504 protein-coding Lipm lipase family member M ASSOCIATED WITH autoimmune lymphoproliferative syndrome (ortholog); PTEN hamartoma tumor syndrome (ortholog) NW_004955425 4150780 4170912 - 102020139 AGCD01025310;GBCC01000396;XM_005385861 XP_005385918 MODEL 8937257 protein-coding Trappc3 trafficking protein particle complex subunit 3 INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN cytosol (ortholog); Golgi membrane (ortholog); TRAPP complex (ortholog) NW_004955452 14160612 14172896 - 102027140 AGCD01044453;AGCD01044454;GBCC01015358;XM_005395172;XM_005395173;XM_005395174;XM_005395175 XP_005395229;XP_005395230;XP_005395231;XP_005395232 MODEL 8901068 pseudo LOC102023841 ubiquitin-like modifier-activating enzyme 1 pseudogene NW_004955435 8791945 8792821 - 102023841 AGCD01033015 MODEL 8833633 protein-coding Tspan4 tetraspanin 4 ENCODES a protein that exhibits antigen binding (ortholog); integrin binding (ortholog); INVOLVED IN mitocytosis (ortholog); protein-containing complex assembly (ortholog); regulation of mitochondrial membrane potential (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN migrasome (ortholog); plasma membrane (ortholog); vesicle (ortholog) NW_004955476 11277881 11291008 - 102007656 AGCD01055446;AGCD01055447;GBDK01000814;XM_005401804;XM_005401805;XM_013502958 XP_005401861;XP_005401862;XP_013358412 MODEL 9044425 pseudo LOC102012045 chromobox protein homolog 3 pseudogene NW_004955402 54299108 54299688 - 102012045 AGCD01001394 MODEL 8763029 protein-coding Plek2 pleckstrin 2 ENCODES a protein that exhibits phosphatidylinositol-3,4-bisphosphate binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); positive regulation of cell projection organization (ortholog); positive regulation of plasma membrane bounded cell projection assembly (ortholog); ASSOCIATED WITH Leber congenital amaurosis 13 (ortholog); Prostatic Neoplasms (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog) NW_004955466 2818004 2836688 + 102016362 AGCD01050765;AGCD01050766;AGCD01050767;AGCD01050768;GBDF01147329;XM_005399083 XP_005399140 MODEL 8892956 ncrna LOC102008163 uncharacterized LOC102008163 NW_004955448 3515139 3550351 + 102008163 AGCD01041335;GBDF01279163;XR_262458 MODEL 8940122 protein-coding LOC102008972 uncharacterized LOC102008972 NW_004955515 4155520 4227819 - 102008972 AGCD01067316;AGCD01067317;GBCE01099088;XM_013506861 XP_013362315 MODEL 8712953 protein-coding Lipn lipase family member N ASSOCIATED WITH autoimmune lymphoproliferative syndrome (ortholog); autosomal recessive congenital ichthyosis 8 (ortholog); PTEN hamartoma tumor syndrome (ortholog) NW_004955425 4187537 4205066 - 102020818 AGCD01025310;GBDK01267087;XM_005385863;XM_013514915 XP_005385920;XP_013370369 MODEL 8852360 protein-coding LOC102005641 sialic acid-binding Ig-like lectin 13 NW_004955558 974508 988735 + 102005641 AGCD01073408;AGCD01073409;GBBH01177448;XM_013508883 XP_013364337 MODEL 8701340 protein-coding Tspan5 tetraspanin 5 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN positive regulation of Notch signaling pathway (ortholog); protein localization to plasma membrane (ortholog); protein maturation (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955405 8725761 8759784 - 102020520 AGCD01004751;GBCQ01094713;GBDF01221548;XM_013517460 XP_013372914 MODEL 9058587 protein-coding Pgls 6-phosphogluconolactonase ENCODES a protein that exhibits 6-phosphogluconolactonase activity (ortholog); monosaccharide binding (ortholog); INVOLVED IN pentose-phosphate shunt (ortholog); pentose-phosphate shunt, oxidative branch (ortholog); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - oxidative phase; ribose 5-phosphate isomerase deficiency pathway; ASSOCIATED WITH osteoporosis (ortholog) NW_004955524 797439 801070 - 102009981 AGCD01068709;GBDF01006033;XM_005409530;XR_001231947 XP_005409587 MODEL 9027259 pseudo LOC102011620 60S ribosomal protein L27 pseudogene NW_004955452 12777543 12777937 - 102011620 AGCD01044365 MODEL 8772304 protein-coding Prr29 proline rich 29 ASSOCIATED WITH hyperkalemic periodic paralysis (ortholog) NW_004955478 7851993 7857147 - 102016705 AGCD01055998;GBBH01063008;XM_013503227;XM_013503228 XP_013358681;XP_013358682 MODEL 8911182 protein-coding Pcdh15 protocadherin related 15 INVOLVED IN actin filament organization (ortholog); adult locomotory behavior (ortholog); adult walking behavior (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 23 (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog); photoreceptor outer segment (ortholog) NW_004955425 8443523 9203177 - 102007917 AGCD01025407;AGCD01025408;AGCD01025409;AGCD01025410;AGCD01025411;AGCD01025412;AGCD01025413;AGCD01025414;AGCD01025415;AGCD01025416;AGCD01025417;AGCD01025418;AGCD01025419;AGCD01025420;GBDF01277720;XM_013514752 XP_013370206 MODEL 9054534 protein-coding Padi1 peptidyl arginine deiminase 1 ENCODES a protein that exhibits calcium ion binding (ortholog); protein-arginine deiminase activity (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955527 1610643 1641953 - 102024159 AGCD01069411;GBDJ01003128;XM_005409818;XM_005409820;XM_013507413 XP_005409875;XP_005409877;XP_013362867 MODEL 8727583 protein-coding Pygl glycogen phosphorylase L ENCODES a protein that exhibits AMP binding (ortholog); ATP binding (ortholog); bile acid binding (ortholog); INVOLVED IN 5-phosphoribose 1-diphosphate biosynthetic process (ortholog); glucose homeostasis (ortholog); glycogen catabolic process (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; glycogen degradation pathway; glycogen metabolic pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); genetic disease (ortholog); glycogen storage disease (ortholog) NW_004955409 11970112 12007102 + 102014538 AGCD01009530;GBBH01062062;XM_005376795 XP_005376852 MODEL 8986111 protein-coding LOC102010825 olfactory receptor 4D6 ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog) NW_004955511 3967106 3968050 + 102010825 AGCD01066484;XM_005408062 XP_005408119 MODEL 9066615 ncrna LOC102019286 uncharacterized LOC102019286 NW_004955494 7882189 7889175 + 102019286 AGCD01061558;GBDF01308021;XR_264121 MODEL 8827830 protein-coding Ndufaf5 NADH:ubiquinone oxidoreductase complex assembly factor 5 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); Leber plus disease (ortholog); Leigh disease (ortholog); FOUND IN matrix side of mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955415 23221084 23263548 + 102003535 AGCD01016552;GBDF01053633;XM_005380887;XM_013512337;XM_013512338;XR_001233234 XP_005380944;XP_013367791;XP_013367792 MODEL 8756374 protein-coding Smim43 small integral membrane protein 43 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN mesendoderm development (ortholog); positive regulation of D-glucose transmembrane transport (ortholog); ASSOCIATED WITH neurodevelopmental disorder with hearing loss, seizures, and brain abnormalities (ortholog); Neurodevelopmental Disorders (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN plasma membrane (ortholog) NW_004955428 18789746 18797027 + 102018420 AGCD01028071;GBDK01348016;XM_013515253 XP_013370707 MODEL 8813947 protein-coding Wfikkn1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 ENCODES a protein that exhibits receptor antagonist activity (ortholog); transforming growth factor beta binding (ortholog); INVOLVED IN muscle cell development (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); roof of mouth development (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog); FOUND IN extracellular region (ortholog) NW_004955442 16573094 16577650 - 102024168 AGCD01037901;GBDK01343854;XM_005391633 XP_005391690 MODEL 8849987 ncrna LOC102015785 uncharacterized LOC102015785 NW_004955445 5422871 5426158 + 102015785 AGCD01039470;GBDF01074614;XR_001235565;XR_262304 MODEL 8809489 protein-coding LOC102023459 taste receptor type 2 member 14-like NW_004955413 8021256 8022194 - 102023459 AGCD01013841;XM_005379627 XP_005379684 MODEL 8797314 protein-coding Epb41l2 erythrocyte membrane protein band 4.1 like 2 ENCODES a protein that exhibits PH domain binding (ortholog); spectrin binding (ortholog); INVOLVED IN positive regulation of protein localization to cell cortex (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cell cortex (ortholog); cell junction (ortholog); COP9 signalosome (ortholog) NW_004955436 11650584 11805822 - 102030344 AGCD01033818;AGCD01033819;AGCD01033820;GBBH01093601;XM_013516681 XP_013372135 MODEL 8717173 protein-coding LOC102008165 filaggrin-2 NW_004955589 115942 127045 + 102008165 AGCD01076155;AGCD01076156;GBCC01029912;XM_005414527;XM_013509950;XM_013509951 XP_005414584;XP_013365404;XP_013365405 MODEL 8951421 protein-coding Ptgdr prostaglandin D2 receptor ENCODES a protein that exhibits prostaglandin D receptor activity (ortholog); prostaglandin J receptor activity (ortholog); INVOLVED IN adenosine metabolic process (ortholog); cellular response to prostaglandin D stimulus (ortholog); inflammatory response (ortholog); PARTICIPATES IN eicosanoid signaling pathway; prostaglandin D2 signaling pathway; ASSOCIATED WITH asthma (ortholog); COVID-19 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955409 10801370 10810161 - 102011282 AGCD01009485;GBDK01397856;XM_005376785 XP_005376842 MODEL 8702201 pseudo LOC102005642 T-complex protein 1 subunit theta pseudogene NW_004955443 13804351 13806658 - 102005642 AGCD01038484 MODEL 9057901 protein-coding Slc30a9 solute carrier family 30 member 9 ENCODES a protein that exhibits chromatin binding (ortholog); nuclear receptor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN intracellular zinc ion homeostasis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of mitochondrion organization (ortholog); ASSOCIATED WITH Birk-Landau-Perez Syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytoskeleton (ortholog); endoplasmic reticulum (ortholog) NW_004955443 5641372 5716188 - 102009766 AGCD01038243;GBDF01187667;XM_005391923 XP_005391980 MODEL 8988606 protein-coding Rit2 Ras like without CAAX 2 ENCODES a protein that exhibits calmodulin binding (ortholog); chromatin binding (ortholog); GTP binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); intracellular signal transduction (ortholog); maintenance of protein location in cell (ortholog); ASSOCIATED WITH acute myocardial infarction (ortholog); chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN cell body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955402 28737882 29137006 - 102021405 AGCD01000728;AGCD01000729;AGCD01000730;AGCD01000731;AGCD01000732;AGCD01000733;AGCD01000734;AGCD01000735;AGCD01000736;AGCD01000737;AGCD01000738;GBDI01042722;XM_005372848;XM_005372849 XP_005372905;XP_005372906 MODEL 8794239 ncrna LOC102018796 uncharacterized LOC102018796 NW_004955405 8543243 8547181 - 102018796 AGCD01004747;GBDF01238909;XR_259364 MODEL 39133403 snrna U4 U4 spliceosomal RNA 8788525 protein-coding Sox10 SRY-box transcription factor 10 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity (ortholog); INVOLVED IN cell differentiation (ortholog); cell maturation (ortholog); cellular response to progesterone stimulus (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Charcot-Marie-Tooth disease (ortholog); Deafness (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); mitochondrial outer membrane (ortholog) NW_004955413 24313311 24323112 - 102013710 AGCD01014360;GBBH01007145;XM_005379237 XP_005379294 MODEL 8974060 protein-coding LOC102013240 janus kinase and microtubule-interacting protein 2 NW_004956233 948 7905 - 102013240 AGCD01079289;XM_005415182 XP_005415239 MODEL 8935942 protein-coding Sf3b2 splicing factor 3b subunit 2 INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955422 19242041 19266479 - 102020130 AGCD01022989;AGCD01022990;GBBH01033396;GBDF01043546;XM_005384431 XP_005384488 MODEL 8946942 pseudo LOC102008563 60S ribosomal protein L39-like NW_004955520 1054945 1055417 - 102008563 AGCD01068042 MODEL 8800620 pseudo LOC102011623 60S ribosomal protein L21 pseudogene NW_004955453 11145197 11145736 + 102011623 AGCD01044801 MODEL 8908462 protein-coding Pdpn podoplanin ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); chemokine binding (ortholog); folic acid transmembrane transporter activity (ortholog); INVOLVED IN actin-mediated cell contraction (ortholog); amino acid transport (ortholog); cell adhesion (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Albuminuria (ortholog); bacterial pneumonia (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cell junction (ortholog) NW_004955527 4183639 4215200 - 102018128 AGCD01069499;AGCD01069500;GBCE01052774;XM_005409891 XP_005409948 MODEL 8852543 ncrna LOC102007073 uncharacterized LOC102007073 NW_004955450 13276074 13290515 - 102007073 AGCD01042733;GBDF01306692;XR_262551;XR_262552 MODEL 8813481 ncrna LOC102011190 uncharacterized LOC102011190 NW_004955413 27903491 27912153 + 102011190 AGCD01014537;GBDI01285497;XR_260120 MODEL 8976831 ncrna LOC102008564 uncharacterized LOC102008564 NW_004955523 46481 51442 + 102008564 AGCD01068431;GBBH01049104;XR_001231942;XR_264632 MODEL 8735754 pseudo LOC102011624 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955406 19815337 19816321 - 102011624 AGCD01006092 MODEL 8794086 protein-coding Rwdd2a RWD domain containing 2A ASSOCIATED WITH immunodeficiency 23 (ortholog) NW_004955411 10925958 10929340 + 102013151 AGCD01011798;GBDK01364773;XM_005377687;XM_005377688;XM_013510759 XP_005377744;XP_005377745;XP_013366213 MODEL 9021853 protein-coding Tlr1 toll like receptor 1 ENCODES a protein that exhibits identical protein binding (ortholog); lipopeptide binding (ortholog); Toll-like receptor 2 binding (ortholog); INVOLVED IN cellular response to triacyl bacterial lipopeptide (ortholog); defense response (ortholog); detection of triacyl bacterial lipopeptide (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH aspergillosis (ortholog); asthma (ortholog); Brain Injuries (ortholog); FOUND IN Golgi apparatus (ortholog); membrane raft (ortholog); receptor complex (ortholog) NW_004955443 8442419 8450318 + 102004332 AGCD01038326;GBBH01222008;GBCE01080086;XM_005391996 XP_005392053 MODEL 8819711 protein-coding LOC102019287 olfactory receptor 7E24-like NW_004955495 533469 599025 - 102019287 AGCD01061635;AGCD01061636;AGCD01061637;AGCD01061638;AGCD01061639;AGCD01061640;AGCD01061641;AGCD01061642;GBDF01039324;XM_005405558 XP_005405615 MODEL 8921351 ncrna LOC102015791 uncharacterized LOC102015791 NW_004955449 10622348 10629138 - 102015791 AGCD01042072;GBDI01352231;XR_262496 MODEL 9033835 protein-coding Rad51d RAD51 paralog D ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); ATP-dependent DNA damage sensor activity (ortholog); four-way junction DNA binding (ortholog); INVOLVED IN chromosome organization (ortholog); DNA damage response (ortholog); DNA strand invasion (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); breast carcinoma (ortholog); FOUND IN centrosome (ortholog); chromosome, telomeric region (ortholog); Rad51B-Rad51C-Rad51D-XRCC2 complex (ortholog) NW_004955481 9795102 9810426 - 102011205 AGCD01057117;AGCD01057118;GBDK01318937;XM_005402864;XM_005402867;XM_013503403 XP_005402921;XP_005402924;XP_013358857 MODEL 8858145 ncrna LOC102023460 uncharacterized LOC102023460 NW_004955414 18802615 18804119 - 102023460 AGCD01015287;GBDF01087275;XR_001233176;XR_001233177 MODEL 10114782 ncrna LOC106147087 uncharacterized LOC106147087 NW_004955408 35473043 35581443 + 106147087 AGCD01008946;AGCD01008947;AGCD01008948;AGCD01008949;AGCD01008950;AGCD01008951;AGCD01008952;AGCD01008953;AGCD01008954;AGCD01008955;AGCD01008956;AGCD01008957;XR_001231823;XR_001231824;XR_001231826 MODEL 8954683 protein-coding Poglut1 protein O-glucosyltransferase 1 ENCODES a protein that exhibits glucosyltransferase activity (ortholog); UDP-glucosyltransferase activity (ortholog); UDP-xylosyltransferase activity (ortholog); INVOLVED IN axial mesoderm development (ortholog); circulatory system development (ortholog); muscle tissue development (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2Z (ortholog); Dowling-Degos disease (ortholog); Dowling-Degos Disease 4 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog) NW_004955427 19188512 19206050 + 102018417 AGCD01027359;AGCD01027360;GBDJ01299744;XM_005386444 XP_005386501 MODEL 8999270 protein-coding Wfikkn2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 ENCODES a protein that exhibits receptor antagonist activity (ortholog); transforming growth factor beta binding (ortholog); INVOLVED IN muscle cell development (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); roof of mouth development (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog) NW_004955451 10976748 10982482 - 102029352 AGCD01043338;GBCB01111308;XM_005394122 XP_005394179 MODEL 10186633 ncrna LOC106149924 uncharacterized LOC106149924 NW_004955402 10356702 10388333 + 106149924 AGCD01000264;AGCD01000265;AGCD01000266;AGCD01000267;AGCD01000268;GBBH01124966;XR_001236409 MODEL 8780783 protein-coding C1s complement C1s ENCODES a protein that exhibits identical protein binding (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN glial cell differentiation (ortholog); response to cAMP (ortholog); ASSOCIATED WITH autoimmune disease (ortholog); autoimmune hepatitis (ortholog); Complement Component C1s Deficiency (ortholog); FOUND IN extracellular region (ortholog) NW_004955413 4620450 4630860 + 102011424 AGCD01013621;GBDF01017372;XM_005378855 XP_005378912 MODEL 9043830 ncrna LOC102012030 uncharacterized LOC102012030 NW_004955442 16080957 16097609 + 102012030 AGCD01037891;GBDF01225468;XR_262160;XR_262161 MODEL 9014812 protein-coding Ptgdr2 prostaglandin D2 receptor 2 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); prostaglandin D receptor activity (ortholog); prostaglandin F receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); calcium-mediated signaling (ortholog); chemotaxis (ortholog); ASSOCIATED WITH aspirin-induced respiratory disease (ortholog); asthma (ortholog); COVID-19 (ortholog) NW_004955511 5536602 5539944 - 102018518 AGCD01066567;AGCD01066568;GBDI01346045;XM_005408286 XP_005408343 MODEL 8811189 protein-coding Slc6a9 solute carrier family 6 member 9 ENCODES a protein that exhibits glycine transmembrane transporter activity (ortholog); glycine:sodium symporter activity (ortholog); INVOLVED IN glycine import across plasma membrane (ortholog); glycine secretion, neurotransmission (ortholog); glycine transport (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN apical plasma membrane (ortholog); asymmetric synapse (ortholog); basal plasma membrane (ortholog) NW_004955537 3520516 3549492 - 102009543 AGCD01070960;AGCD01070961;GBCE01066064;XM_005410695;XM_005410696;XM_005410698;XM_005410699;XM_005410700;XM_005410702;XM_005410704;XM_005410705;XM_013507775;XM_013507776;XM_013507777;XM_013507778;XM_013507779 XP_005410752;XP_005410753;XP_005410755;XP_005410756;XP_005410757;XP_005410759;XP_005410761;XP_005410762;XP_013363229;XP_013363230;XP_013363231;XP_013363232;XP_013363233 MODEL 8704128 protein-coding LOC102023842 zinc finger protein OZF-like NW_004955532 259427 307861 - 102023842 AGCD01070111;AGCD01070112;AGCD01070113;GBDF01011091;XM_005410144;XM_005410145;XM_013507658;XM_013507659;XM_013507660 XP_005410201;XP_005410202;XP_013363112;XP_013363113;XP_013363114 MODEL 8824404 protein-coding Trappc3l trafficking protein particle complex subunit 3L ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); intellectual disability (ortholog); FOUND IN TRAPP complex (ortholog) NW_004955526 120620 217855 + 102025940 AGCD01069212;AGCD01069213;AGCD01069214;AGCD01069215;GBCQ01154261;XM_005409744;XM_013507364;XM_013507365;XM_013507366;XM_013507367;XM_013507368 XP_005409801;XP_013362818;XP_013362819;XP_013362820;XP_013362821;XP_013362822 MODEL 8842486 pseudo LOC102013244 tetraspanin-7-like NW_004955452 10222211 10222773 - 102013244 AGCD01044271 MODEL 8838018 protein-coding LOC102006704 type-1 protein phosphatase inhibitor 4-like NW_004955516 5498178 5498969 + 102006704 AGCD01067562;GBDF01004265;XM_005409000 XP_005409057 MODEL 8888714 protein-coding Pcdh17 protocadherin 17 INVOLVED IN adult behavior (ortholog); negative regulation of synaptic transmission (ortholog); presynaptic active zone assembly (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); postsynaptic membrane (ortholog) NW_004955404 46795303 46886918 - 102006628 AGCD01004470;AGCD01004471;AGCD01004472;GBDI01105830;XM_013516708;XM_013516710;XM_013516713;XM_013516718;XM_013516720 XP_013372162;XP_013372164;XP_013372167;XP_013372172;XP_013372174 MODEL 9021298 ncrna LOC102012046 uncharacterized LOC102012046 NW_004955403 2740603 2756599 + 102012046 AGCD01001738;GBDF01080335;XR_259139 MODEL 9064039 protein-coding LOC102021758 tubulin polyglutamylase TTLL13 NW_004955416 15080728 15102506 - 102021758 AGCD01017299;AGCD01017300;GBDI01167579;XM_005381529;XM_013512473;XM_013512474 XP_005381586;XP_013367927;XP_013367928 MODEL 8875611 ncrna LOC102012033 uncharacterized LOC102012033 NW_004955444 1600025 1605604 + 102012033 AGCD01038732;GBDF01041654;XR_001235529 MODEL 9000083 pseudo LOC102008973 translationally-controlled tumor protein pseudogene NW_004955516 2157659 2158275 + 102008973 AGCD01067449 MODEL 8767931 protein-coding Plekha1 pleckstrin homology domain containing A1 ENCODES a protein that exhibits PDZ domain binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); INVOLVED IN androgen metabolic process (ortholog); B cell receptor signaling pathway (ortholog); cellular response to hydrogen peroxide (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH 2-Methylbutyryl-CoA Dehydrogenase Deficiency (ortholog); COVID-19 (ortholog); craniosynostosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955477 659640 730394 + 102020112 AGCD01055492;AGCD01055493;AGCD01055494;GBDF01226547;XM_005401937;XM_005401939;XM_005401940;XM_005401941;XM_005401942;XM_005401943;XM_005401945;XM_013503083;XM_013503084 XP_005401994;XP_005401996;XP_005401997;XP_005401998;XP_005401999;XP_005402000;XP_005402002;XP_013358537;XP_013358538 MODEL 8967426 ncrna LOC102011192 uncharacterized LOC102011192 NW_004955469 9744913 9758948 + 102011192 AGCD01052516;GBCB01088434;XR_263445 MODEL 8869791 protein-coding Ssr4 signal sequence receptor subunit 4 ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN endoplasmic reticulum (ortholog); Sec61 translocon complex (ortholog) NW_004955580 507672 511498 + 102018999 AGCD01075607;GBDF01005919;XM_005414152;XM_005414153;XM_005414154;XM_013509713 XP_005414209;XP_005414210;XP_005414211;XP_013365167 MODEL 8934931 protein-coding Trappc4 trafficking protein particle complex subunit 4 INVOLVED IN autophagy (ortholog); dendrite development (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN dendrite (ortholog); Golgi stack (ortholog); postsynaptic density membrane (ortholog) NW_004955412 20129154 20133043 + 102022576 AGCD01012994;GBDF01004559;XM_005378290 XP_005378347 MODEL 8835305 protein-coding LOC102009725 sperm motility kinase Z-like NW_004955421 18237422 18307124 + 102009725 AGCD01022039;AGCD01022040;AGCD01022041;AGCD01022042;GBBH01067465;XM_005383799;XM_005383800;XM_013513643;XR_001233830 XP_005383856;XP_005383857;XP_013369097 MODEL 8964625 protein-coding LOC102005646 zinc finger protein 136-like NW_004955569 1261038 1282057 - 102005646 AGCD01074645;GBDI01011361;XM_005413498;XM_013509376 XP_005413555;XP_013364830 MODEL 8727017 protein-coding Padi2 peptidyl arginine deiminase 2 ENCODES a protein that exhibits histone H3R26 arginine deiminase activity (ortholog); nuclear estrogen receptor binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); estrogen receptor signaling pathway (ortholog); negative regulation of chemokine-mediated signaling pathway (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); COVID-19 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (ortholog); euchromatin (ortholog) NW_004955527 1709307 1751332 + 102024948 AGCD01069414;GBCB01005607;XM_005409821 XP_005409878 MODEL 10328650 ncrna LOC106149925 uncharacterized LOC106149925 NW_004955457 13630497 13639479 + 106149925 AGCD01047049;XR_001236406;XR_001236407 MODEL 9029607 protein-coding Wfs1 wolframin ER transmembrane glycoprotein ENCODES a protein that exhibits ATPase binding (ortholog); calcium-dependent protein binding (ortholog); calmodulin binding (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); endoplasmic reticulum calcium ion homeostasis (ortholog); endoplasmic reticulum unfolded protein response (ortholog); ASSOCIATED WITH Auditory Neuropathy (ortholog); autistic disorder (ortholog); autosomal dominant nonsyndromic deafness (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); secretory granule (ortholog) NW_004955514 3902508 3924281 - 102020042 AGCD01067119;AGCD01067120;AGCD01067121;GBCB01055926;GBDK01133953;XM_013506848 XP_013362302 MODEL 8914975 protein-coding Ssrp1 structure specific recognition protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN nucleosome disassembly (ortholog); regulation of chromatin organization (ortholog); PARTICIPATES IN cisplatin drug pathway; histone modification pathway; RNA polymerase I transcription pathway; ASSOCIATED WITH intellectual disability (ortholog); FOUND IN FACT complex (ortholog); nucleus (ortholog) NW_004955511 2378720 2388201 - 102016405 AGCD01066400;AGCD01066401;GBCB01024236;XM_013506474;XM_013506475;XM_013506476;XM_013506477 XP_013361928;XP_013361929;XP_013361930;XP_013361931 MODEL 9000602 protein-coding Pygm glycogen phosphorylase, muscle associated ENCODES a protein that exhibits AMP binding (ortholog); carbohydrate binding (ortholog); glycogen phosphorylase activity (ortholog); INVOLVED IN glycogen catabolic process (ortholog); glycogen metabolic process (ortholog); intracellular calcium ion homeostasis (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); cholestasis (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN sarcoplasmic reticulum (ortholog) NW_004955422 20411480 20424676 + 102030205 AGCD01023079;GBBH01100132;XM_005384564 XP_005384621 MODEL 8789680 pseudo LOC102003813 small nuclear ribonucleoprotein Sm D2 pseudogene NW_004955561 1082911 1083548 - 102003813 AGCD01073830 MODEL 9028598 protein-coding Ndufaf6 NADH:ubiquinone oxidoreductase complex assembly factor 6 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH Fanconi renotubular syndrome 5 (ortholog); genetic disease (ortholog); Klippel-Feil syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955417 11159449 11180323 + 102003130 AGCD01018123;AGCD01018124;GBCC01035127;GBDF01252020;XM_013512780 XP_013368234 MODEL 10242450 ncrna LOC106149926 uncharacterized LOC106149926 NW_004955457 13617255 13630462 + 106149926 AGCD01047049;XR_001236408 MODEL 8911227 pseudo LOC102008568 ubiquitin-protein ligase E3C-like NW_004955532 1668535 1681482 + 102008568 AGCD01070197 MODEL 9046163 protein-coding Sstr1 somatostatin receptor 1 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); somatostatin receptor activity (ortholog); INVOLVED IN cellular response to estradiol stimulus (ortholog); cellular response to leukemia inhibitory factor (ortholog); cerebellum development (ortholog); PARTICIPATES IN somatostatin signaling pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Experimental Diabetes Mellitus (ortholog); neuroendocrine tumor (ortholog); FOUND IN cytoplasm (ortholog); G protein-coupled receptor heterodimeric complex (ortholog); G protein-coupled receptor homodimeric complex (ortholog) NW_004955409 22889800 22894480 - 102018062 AGCD01010047;GBDJ01336093;XM_005376892;XM_005376893 XP_005376949;XP_005376950 MODEL 8969024 protein-coding Rwdd2b RWD domain containing 2B NW_004955407 28363476 28371491 - 102024762 AGCD01007581;GBCB01076811;XM_005375609;XM_005375610;XM_005375611 XP_005375666;XP_005375667;XP_005375668 MODEL 8944727 ncrna LOC102015792 uncharacterized LOC102015792 NW_004955588 264857 272070 + 102015792 AGCD01076099;AGCD01076100;GBCB01027579;XR_265117 MODEL 8889132 protein-coding Tspan6 tetraspanin 6 INVOLVED IN negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of cytoplasmic pattern recognition receptor signaling pathway (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); developmental and epileptic encephalopathy 9 (ortholog) NW_004955503 6782264 6788533 - 102020466 AGCD01064769;AGCD01064770;GBBH01229992;XM_005406932 XP_005406989 MODEL 8790989 trna Trnal-caa transfer RNA leucine (anticodon CAA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955465;NW_004955418;NW_004955465;NW_004955465 13283889;29926451;13908819;13888432 13283993;29926556;13908923;13888537 -;+;+;- 101978789 AGCD01019491;AGCD01050597;AGCD01050633;AGCD01050634 MODEL 8933341 pseudo LOC102018802 UMP-CMP kinase pseudogene NW_004955407 36136514 36150095 + 102018802 AGCD01007758;AGCD01007759 MODEL 9041840 protein-coding Rita1 RBPJ interacting and tubulin associated 1 ENCODES a protein that exhibits tubulin binding (ortholog); INVOLVED IN negative regulation of Notch signaling pathway (ortholog); nuclear export (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955482 9510070 9514118 + 102014249 AGCD01057574;GBDI01294672;XM_005403213 XP_005403270 MODEL 8928053 protein-coding LOC102015798 DNA repair protein complementing XP-C cells-like NW_004956269 283 3940 + 102015798 AGCD01079352;XM_005415188 XP_005415245 MODEL 8888536 protein-coding Syt2 synaptotagmin 2 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); inositol 1,3,4,5 tetrakisphosphate binding (ortholog); INVOLVED IN calcium-dependent activation of synaptic vesicle fusion (ortholog); positive regulation of dendrite extension (ortholog); ASSOCIATED WITH axonal neuropathy (ortholog); congenital myasthenic syndrome (ortholog); congenital myasthenic syndrome 7 (ortholog); FOUND IN axon (ortholog); neuromuscular junction (ortholog); plasma membrane (ortholog) NW_004955406 38638192 38743077 - 102028056 AGCD01006609;GBDF01114073;XM_005375224;XM_005375225;XM_005375226 XP_005375281;XP_005375282;XP_005375283 MODEL 9018561 pseudo LOC102007074 60S ribosomal protein L27a pseudogene NW_004955450 9968147 9968719 + 102007074 AGCD01042602 MODEL 155888855 protein-coding SMIM45 small integral membrane protein 45 8901625 protein-coding Pdpr pyruvate dehydrogenase phosphatase regulatory subunit ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); Joubert syndrome 1 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955484 3007435 3044060 - 102027190 AGCD01058149;AGCD01058150;GBCQ01177188;GBDJ01186948;XM_005403465 XP_005403522 MODEL 8736669 protein-coding Ptgds prostaglandin D2 synthase ENCODES a protein that exhibits fatty acid binding (ortholog); prostaglandin-D synthase activity (ortholog); retinoid binding (ortholog); INVOLVED IN gene expression (ortholog); negative regulation of male germ cell proliferation (ortholog); prostaglandin biosynthetic process (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); arteriosclerosis (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog); Golgi apparatus (ortholog) NW_004955513 5009530 5012781 + 102028669 AGCD01066949;AGCD01066950;GBCQ01008032;XM_005408569 XP_005408626 MODEL 8966521 protein-coding Lipt1 lipoyltransferase 1 ENCODES a protein that exhibits N-acyltransferase activity (ortholog); INVOLVED IN protein lipoylation (ortholog); ASSOCIATED WITH Cardiovascular Abnormalities (ortholog); Failure to Thrive (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955470 5480279 5492259 + 102009933 AGCD01052751;GBDJ01048175;XM_005400739;XM_013522813 XP_005400796;XP_013378267 MODEL 8864864 pseudo LOC102011627 glyceraldehyde-3-phosphate dehydrogenase pseudogene NW_004955456 12484506 12486673 - 102011627 AGCD01046567 MODEL 9040876 protein-coding Whamm WASP homolog associated with actin, golgi membranes and microtubules ENCODES a protein that exhibits Arp2/3 complex binding (ortholog); microtubule binding (ortholog); small GTPase binding (ortholog); INVOLVED IN actin filament organization (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); focal adhesion assembly (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog); Golgi membrane (ortholog) NW_004955416 13825925 13849883 - 102005372 AGCD01017234;AGCD01017235;GBBH01172264;GBCB01026385;XM_013512488 XP_013367942 MODEL 8918972 protein-coding Rexo2 RNA exonuclease 2 ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); 3'-5'-DNA exonuclease activity (ortholog); 3'-5'-RNA exonuclease activity (ortholog); INVOLVED IN nucleobase-containing compound metabolic process (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); focal adhesion (ortholog); mitochondrial intermembrane space (ortholog) NW_004955412 16025304 16035925 + 102013269 AGCD01012891;GBCQ01066636;XM_005378159;XM_005378160 XP_005378216;XP_005378217 MODEL 9008055 protein-coding LOC102021762 uncharacterized LOC102021762 NW_004955417 27505855 27508890 + 102021762 AGCD01018558;GBDF01146423;XM_005381948;XM_005381949;XM_005381950 XP_005382005;XP_005382006;XP_005382007 MODEL 8826894 protein-coding Pglyrp1 peptidoglycan recognition protein 1 ENCODES a protein that exhibits Hsp70 protein binding (ortholog); molecular adaptor activity (ortholog); peptidoglycan binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); biological process involved in interaction with host (ortholog); defense response to Gram-positive bacterium (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); FOUND IN extracellular space (ortholog) NW_004955574 424046 427675 - 102024734 AGCD01075105;GBDK01185353;XM_005413825 XP_005413882 MODEL 8996270 ncrna LOC102003814 uncharacterized LOC102003814 NW_004955444 9445917 9463729 - 102003814 AGCD01038970;GBDF01128007;XR_262253;XR_262254 MODEL 8848102 pseudo LOC102008167 sorting nexin-2-like NW_004955402 45656377 45658152 - 102008167 AGCD01001141 MODEL 8905600 protein-coding Epb41l3 erythrocyte membrane protein band 4.1 like 3 INVOLVED IN axon development (ortholog); myelin maintenance (ortholog); neuron projection morphogenesis (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); chromosome 18p deletion syndrome (ortholog); esophagus squamous cell carcinoma (ortholog); FOUND IN axolemma (ortholog); cell junction (ortholog); cell-cell junction (ortholog) NW_004955402 5459586 5674745 + 102005981 AGCD01000136;AGCD01000137;GBDF01004195;XM_005372623;XM_005372625;XM_005372626;XM_005372627;XM_005372629;XM_005372630;XM_013516834;XM_013516878;XM_013516964;XM_013517037;XM_013517088;XM_013517123;XM_013517195;XM_013517228;XM_013517264;XM_013517295;XM_013517317;XM_013517351;XM_013517381;XM_013517413;XM_013517440 XP_005372680;XP_005372682;XP_005372683;XP_005372684;XP_005372686;XP_005372687;XP_013372288;XP_013372332;XP_013372418;XP_013372491;XP_013372542;XP_013372577;XP_013372649;XP_013372682;XP_013372718;XP_013372749;XP_013372771;XP_013372805;XP_013372835;XP_013372867;XP_013372894 MODEL 39131548 protein-coding LIPT2 lipoyl(octanoyl) transferase 2 10368634 ncrna LOC106147088 uncharacterized LOC106147088 NW_004955517 1480877 1499189 + 106147088 AGCD01067598;AGCD01067599;GBDI01195112;XR_001231822 MODEL 9014468 protein-coding LOC102023462 chromosome unknown open reading frame, human C11orf16 NW_004955414 24675240 24685494 - 102023462 AGCD01015552;AGCD01015553;GBBH01060385;XM_005380242;XM_005380243;XM_013512042;XM_013512043;XM_013512044 XP_005380299;XP_005380300;XP_013367496;XP_013367497;XP_013367498 MODEL 8818519 protein-coding Tlr10 toll like receptor 10 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH asthma (ortholog); Hyperglycinemia, Lactic Acidosis, and Seizures (ortholog); FOUND IN receptor complex (ortholog) NW_004955443 8442439 8468966 + 102004650 AGCD01038326;AGCD01038327;XM_005391997;XM_013518055 XP_005392054;XP_013373509 MODEL 8771073 protein-coding Rad52 RAD52 homolog, DNA repair protein ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); DNA double-strand break processing involved in repair via single-strand annealing (ortholog); DNA recombination (ortholog); ASSOCIATED WITH colon cancer (ortholog); colorectal cancer (ortholog); hepatocellular carcinoma (ortholog); FOUND IN nucleus (ortholog); protein-containing complex (ortholog); protein-DNA complex (ortholog) NW_004955454 6206195 6227859 + 102011082 AGCD01045225;GBDI01263386;XM_005396004;XM_005396005;XM_005396006;XM_005396007;XM_005396008;XM_005396009;XM_013520158;XM_013520160;XM_013520161 XP_005396061;XP_005396062;XP_005396063;XP_005396064;XP_005396065;XP_005396066;XP_013375612;XP_013375614;XP_013375615 MODEL 8968040 protein-coding Whr1 winged helix repair factor 1 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); double-stranded RNA binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN positive regulation of Ras protein signal transduction (ortholog); positive regulation of single strand break repair (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955437 485110 492493 + 102006607 AGCD01034137;GBDF01043359;XM_005389405 XP_005389462 MODEL 8701410 protein-coding Trappc5 trafficking protein particle complex subunit 5 ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 5 (ortholog); mucolipidosis type IV (ortholog); FOUND IN TRAPP complex (ortholog) NW_004955563 1600027 1601685 - 102026581 AGCD01074153;GBBH01000859;XM_005413166;XM_005413167;XM_005413168;XM_013509161 XP_005413223;XP_005413224;XP_005413225;XP_013364615 MODEL 8703550 ncrna LOC102005651 uncharacterized LOC102005651 NW_004955449 5758290 5762221 + 102005651 AGCD01041942;XR_262490 MODEL 8784600 protein-coding LOC102017677 olfactory receptor 18-like NW_004955495 442150 443091 - 102017677 AGCD01061630;XM_005405555 XP_005405612 MODEL 8739342 ncrna LOC102006708 uncharacterized LOC102006708 NW_004955437 17938818 17949903 - 102006708 AGCD01034764;AGCD01034765;XR_001235038;XR_261890 MODEL 8745538 pseudo LOC102013247 transmembrane protein 216-like NW_004955453 14243472 14246662 + 102013247 AGCD01044860 MODEL 8925029 pseudo LOC102015799 E3 ubiquitin-protein ligase RNF13 pseudogene NW_004955403 46343655 46345148 - 102015799 AGCD01002856 MODEL 8906727 protein-coding Slc7a1 solute carrier family 7 member 1 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); basic amino acid transmembrane transporter activity (ortholog); L-arginine transmembrane transporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); L-amino acid transport (ortholog); L-arginine import across plasma membrane (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Prostatic Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955431 16270648 16315280 + 102025151 AGCD01030377;GBDF01154497;XM_005387753;XM_013515883;XM_013515884 XP_005387810;XP_013371337;XP_013371338 MODEL 8865300 protein-coding Pcdh18 protocadherin 18 INVOLVED IN brain development (ortholog) NW_004955428 5846697 5859028 + 102025382 AGCD01027719;GBCE01170693;XM_005386711;XM_005386712;XM_013515332;XM_013515333 XP_005386768;XP_005386769;XP_013370786;XP_013370787 MODEL 8955374 pseudo LOC102019289 cysteine-rich protein 2-binding protein pseudogene NW_004955423 1306040 1307293 - 102019289 AGCD01023432 MODEL 8717808 pseudo LOC102008974 DNA primase small subunit pseudogene NW_004955434 12000624 12001975 + 102008974 AGCD01032382 MODEL 9010490 protein-coding Smim5 small integral membrane protein 5 NW_004955506 6595977 6607264 - 102014590 AGCD01065432;GBCQ01122299;XM_005407487;XM_013505978;XR_001231589 XP_005407544;XP_013361432 MODEL 8935205 pseudo LOC102008572 E3 ubiquitin-protein ligase RING2 pseudogene NW_004955439 2667966 2668976 - 102008572 AGCD01035656 MODEL 8769812 protein-coding Ptger1 prostaglandin E receptor 1 ENCODES a protein that exhibits D1 dopamine receptor binding (ortholog); prostaglandin E receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating dopamine receptor signaling pathway (ortholog); response to lipopolysaccharide (ortholog); response to prostaglandin E (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955415 33063052 33067580 - 102016702 AGCD01016748;GBDJ01401845;XM_005381104 XP_005381161 MODEL 9013716 protein-coding Slc31a1 solute carrier family 31 member 1 ENCODES a protein that exhibits copper ion binding (ortholog); copper ion transmembrane transporter activity (ortholog); identical protein binding (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to cisplatin (ortholog); copper ion import (ortholog); PARTICIPATES IN cisplatin drug pathway; cisplatin response pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Congenital Abnormalities (ortholog); Embryo Loss (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); early endosome membrane (ortholog) NW_004955419 14221258 14264288 - 102027189 AGCD01020015;GBDJ01239578;XM_005382690 XP_005382747 MODEL 8842458 pseudo LOC102011628 26S proteasome non-ATPase regulatory subunit 14-like NW_004955457 7388758 7389844 + 102011628 AGCD01046877 MODEL 9027605 protein-coding Poglut2 protein O-glucosyltransferase 2 ENCODES a protein that exhibits UDP-glucosyltransferase activity (ortholog); UDP-xylosyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation via serine (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Evans Syndrome, Immunodeficiency, and Premature Immunosenescence associated with Tripeptidyl-Peptidase II Deficiency (ortholog); holoprosencephaly 5 (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum lumen (ortholog); nucleoplasm (ortholog) NW_004955404 8358542 8374216 + 102030378 AGCD01003351;GBDJ01275469;XM_005374028 XP_005374085 MODEL 8955232 ncrna LOC102009731 uncharacterized LOC102009731 NW_004955495 6647375 6652586 + 102009731 AGCD01062086;GBDK01350689;XR_264167 MODEL 8885611 protein-coding LOC102010827 olfactory receptor 10V1 ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog) NW_004955511 4140948 4141914 - 102010827 AGCD01066493;XM_005408271 XP_005408328 MODEL 10347517 protein-coding LOC106147089 receptor-type tyrosine-protein phosphatase gamma-like NW_004955517 3563925 3619511 - 106147089 AGCD01067659;AGCD01067660;AGCD01067661;AGCD01067662;AGCD01067663;GBDF01090397;XM_013506947 XP_013362401 MODEL 9016846 protein-coding LOC102023464 olfactory receptor 51F2-like NW_004955414 20334900 20338787 - 102023464 AGCD01015368;XM_013511718 XP_013367172 MODEL 8735606 protein-coding Pglyrp2 peptidoglycan recognition protein 2 ENCODES a protein that exhibits N-acetylmuramoyl-L-alanine amidase activity (ortholog); peptidoglycan binding (ortholog); peptidoglycan immune receptor activity (ortholog); INVOLVED IN biological process involved in interaction with host (ortholog); defense response to Gram-positive bacterium (ortholog); detection of bacterium (ortholog) NW_004955495 7785398 7792158 + 102004616 AGCD01062164;GBDK01164575;XM_005406067 XP_005406124 MODEL 8964947 pseudo LOC102018807 BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 pseudogene NW_004955408 8524447 8526888 - 102018807 AGCD01008220 MODEL 8859730 protein-coding LOC102023843 HLA class II histocompatibility antigen, DM alpha chain ENCODES a protein that exhibits MHC class II protein complex binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); chaperone cofactor-dependent protein refolding (ortholog); ASSOCIATED WITH contact dermatitis (ortholog); Diabetic Nephropathies (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cell surface (ortholog); endosome membrane (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955437 1558806 1562294 - 102023843 AGCD01034217;GBCQ01154927;GBDJ01008419;XM_005389460 XP_005389517 MODEL 8813197 protein-coding Rad54b RAD54 homolog B ENCODES a protein that exhibits DNA translocase activity (ortholog); identical protein binding (ortholog); INVOLVED IN determination of adult lifespan (ortholog); DNA damage response (ortholog); double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH colon carcinoma (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955417 10598295 10685999 - 102026004 AGCD01018081;AGCD01018082;AGCD01018083;AGCD01018084;AGCD01018085;AGCD01018086;GBCQ01115191;XM_013512842 XP_013368296 MODEL 8973101 protein-coding LOC102012047 PRAME family member 9/15-like NW_004955618 227974 229557 - 102012047 AGCD01077320;XM_013510149 XP_013365603 MODEL 8730198 pseudo LOC102012039 creatine kinase U-type, mitochondrial pseudogene NW_004955447 18787639 18792112 - 102012039 AGCD01041191 MODEL 8908039 protein-coding Plekha2 pleckstrin homology domain containing A2 ENCODES a protein that exhibits fibronectin binding (ortholog); laminin binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN positive regulation of cell-matrix adhesion (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH hereditary spastic paraplegia 54 (ortholog); hypogonadotropic hypogonadism 2 with or without anosmia (ortholog); paraplegia (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); protein-containing complex (ortholog) NW_004955463 14462875 14525174 + 102027500 AGCD01049910;AGCD01049911;GBCE01011414;XM_005398458;XM_005398460;XM_005398461;XM_013521516;XM_013521517 XP_005398515;XP_005398517;XP_005398518;XP_013376970;XP_013376971 MODEL 8778166 protein-coding Ndufaf7 NADH:ubiquinone oxidoreductase complex assembly factor 7 ENCODES a protein that exhibits enzyme binding (ortholog); protein-arginine omega-N symmetric methyltransferase activity (ortholog); INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); peptidyl-arginine methylation, to symmetrical-dimethyl arginine (ortholog); ASSOCIATED WITH RASopathy (ortholog); FOUND IN mitochondrion (ortholog) NW_004955441 5033754 5051720 + 102005971 AGCD01036867;GBDF01044676;XM_005390873;XM_013517532;XM_013517533 XP_005390930;XP_013372986;XP_013372987 MODEL 8953683 protein-coding LOC102011194 cytochrome c oxidase assembly factor 4 homolog, mitochondrial ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog); FOUND IN mitochondrion (ortholog) NW_004955414 17658281 17661867 + 102011194 AGCD01015247;AGCD01015248;GBDF01220602;XM_005379932 XP_005379989 MODEL 8994994 pseudo LOC102012048 60S ribosomal protein L12-like NW_004955403 50676234 50697887 - 102012048 AGCD01002969 MODEL 8946485 protein-coding Sox11 SRY-box transcription factor 11 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN closure of optic fissure (ortholog); cornea development in camera-type eye (ortholog); embryonic digestive tract morphogenesis (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Coffin-Siris syndrome (ortholog); Coffin-Siris syndrome 9 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955487 2678961 2680869 - 102014907 AGCD01059264;XM_005404366 XP_005404423 MODEL 9049067 protein-coding Smim7 small integral membrane protein 7 NW_004955773 11432 22562 - 102008368 AGCD01078319;GBCB01023831;XM_005415106 XP_005415163 MODEL 8856318 protein-coding Rwdd3 RWD domain containing 3 INVOLVED IN negative regulation of NF-kappaB transcription factor activity (ortholog); positive regulation of hypoxia-inducible factor-1alpha signaling pathway (ortholog); positive regulation of protein sumoylation (ortholog) NW_004955435 398707 412476 + 102019947 AGCD01032725;AGCD01032726;GBCQ01096523;XM_005388762;XM_013516467 XP_005388819;XP_013371921 MODEL 9010888 protein-coding LOC102008168 vomeronasal type-1 receptor 2-like NW_004955603 429287 430189 - 102008168 AGCD01076845;XM_005414839 XP_005414896 MODEL 9001350 protein-coding C2 complement C2 INVOLVED IN complement activation (ortholog); positive regulation of apoptotic cell clearance (ortholog); response to nutrient (ortholog); ASSOCIATED WITH age related macular degeneration 14 (ortholog); Alzheimer's disease (ortholog); atypical hemolytic-uremic syndrome (ortholog) NW_004955437 449171 460898 + 102004317 AGCD01034137;GBCE01029038;XM_005389395 XP_005389452 MODEL 8799221 protein-coding Ppia peptidylprolyl isomerase A ENCODES a protein that exhibits cyclosporin A binding (ortholog); heparan sulfate binding (ortholog); integrin binding (ortholog); INVOLVED IN activation of protein kinase B activity (ortholog); apoptotic process (ortholog); cell adhesion molecule production (ortholog); ASSOCIATED WITH aggressive periodontitis (ortholog); atopic dermatitis (ortholog); Bell's palsy (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); extracellular space (ortholog) NW_004955456 7381923 7383203 - 102016448 AGCD01046413;GBBH01002379;GBCQ01008235;XM_005396653 XP_005396710 MODEL 8784137 protein-coding Tlr2 toll like receptor 2 ENCODES a protein that exhibits amyloid-beta binding (ortholog); diacyl lipopeptide binding (ortholog); identical protein binding (ortholog); INVOLVED IN cell surface pattern recognition receptor signaling pathway (ortholog); cellular response to bacterial lipopeptide (ortholog); cellular response to diacyl bacterial lipopeptide (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome 1 (ortholog); acne (ortholog); acute kidney failure (ortholog); FOUND IN cell body (ortholog); cell projection (ortholog); cell surface (ortholog) NW_004955471 8011710 8019063 + 102006336 AGCD01053173;AGCD01053174;GBDF01040609;XM_005400927;XM_013522906 XP_005400984;XP_013378360 MODEL 8802335 protein-coding Padi3 peptidyl arginine deiminase 3 ENCODES a protein that exhibits identical protein binding (ortholog); protein-arginine deiminase activity (ortholog); ASSOCIATED WITH Central Centrifugal Cicatricial Alopecia (ortholog); chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955527 1582065 1608455 - 102023070 AGCD01069410;AGCD01069411;GBDF01049983;XM_005409816;XM_013507408;XM_013507409;XM_013507410;XR_001231973 XP_005409873;XP_013362862;XP_013362863;XP_013362864 MODEL 8788689 protein-coding Pygo1 pygopus family PHD finger 1 ENCODES a protein that exhibits histone H3K4me3 reader activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); hematopoietic progenitor cell differentiation (ortholog); kidney development (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN nucleus (ortholog) NW_004955409 446548 459139 + 102020222 AGCD01009148;AGCD01009149;GBBH01036528;GBCB01072777;XM_013510021 XP_013365475 MODEL 8949303 protein-coding LOC102007080 uncharacterized LOC102007080 NW_004955452 2394438 2439074 + 102007080 AGCD01043895;GBDF01015522;XM_005394736;XM_005394737;XR_001236123 XP_005394793;XP_005394794 MODEL 8941091 ncrna LOC102023474 uncharacterized LOC102023474 NW_004955419 3480398 3524480 - 102023474 AGCD01019725;AGCD01019726;GBDK01002749;XR_001233578 MODEL 8957231 ncrna LOC102009732 uncharacterized LOC102009732 NW_004955424 3418563 3425506 - 102009732 AGCD01024310;GBDF01162625;XR_261036 MODEL 8853668 protein-coding Trappc6b trafficking protein particle complex subunit 6B ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); neurodevelopmental disorder with microcephaly, epilepsy, and brain atrophy (ortholog) NW_004955409 22117329 22131102 + 102015484 AGCD01010017;AGCD01010018;AGCD01010019;AGCD01010020;GBDF01086623;XM_005376885 XP_005376942 MODEL 39133405 snrna U4 U4 spliceosomal RNA 10251931 ncrna LOC106149927 uncharacterized LOC106149927 NW_004955406 12958083 12984947 - 106149927 AGCD01005929;AGCD01005930;GBDF01144794;XR_001236410 MODEL 8938864 protein-coding LOC102013249 short-chain dehydrogenase/reductase family 16C member 6-like NW_004955454 15372653 15401544 - 102013249 AGCD01045493;GBCC01001125;XM_005396086;XM_005396087 XP_005396143;XP_005396144 MODEL 39131455 protein-coding PYGO1 pygopus family PHD finger 1 8816853 pseudo LOC102021038 WD repeat-containing protein 20 pseudogene NW_004955521 639238 759184 + 102021038 AGCD01068140;AGCD01068141;AGCD01068142;AGCD01068143;AGCD01068144;AGCD01068145;AGCD01068146 MODEL 9048912 ncrna LOC102023482 uncharacterized LOC102023482 NW_004955421 1031449 1034746 - 102023482 AGCD01021587;GBBH01057690;XR_260783 MODEL 9066994 protein-coding Rexo4 REX4 homolog, 3'-5' exonuclease ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); double-stranded DNA binding (ortholog); endonuclease activity (ortholog); INVOLVED IN DNA catabolic process (ortholog); DNA repair (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); Habitual Abortions (ortholog); FOUND IN nuclear speck (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955513 2745220 2754927 - 102015878 AGCD01066888;GBBH01077836;XM_005408440;XM_005408443;XM_005408444;XM_005408445 XP_005408497;XP_005408500;XP_005408501;XP_005408502 MODEL 8856077 protein-coding LOC102008978 putative HLA class I histocompatibility antigen, alpha chain H NW_004955437 59805 63404 - 102008978 AGCD01034100;GBBH01004597;XM_013516921;XM_013516922;XM_013516923;XM_013516924;XR_001235068;XR_001235069 XP_013372375;XP_013372376;XP_013372377;XP_013372378 MODEL 8827232 protein-coding Pin4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 ENCODES a protein that exhibits bent DNA binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN rRNA processing (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN chromosome (ortholog); cytoplasm (ortholog); mitochondrial matrix (ortholog) NW_004955475 11563379 11577133 + 102013078 AGCD01055156;AGCD01055157;AGCD01055158;GBDI01136207;XM_005401685 XP_005401742 MODEL 8812534 protein-coding Sf3b3 splicing factor 3b subunit 3 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); negative regulation of protein catabolic process (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955484 3307794 3357600 + 102004819 AGCD01058172;AGCD01058173;AGCD01058174;AGCD01058175;AGCD01058176;GBDF01118268;XM_005403485 XP_005403542 MODEL 9045231 pseudo LOC102012050 protein regulator of cytokinesis 1-like NW_004955451 11417605 11442353 + 102012050 AGCD01043354 MODEL 8799087 protein-coding LOC102011197 vomeronasal type-1 receptor 90-like NW_004955414 14915467 14916408 - 102011197 AGCD01015162;XM_005380438 XP_005380495 MODEL 8814808 protein-coding Smim9 small integral membrane protein 9 ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog) NW_004955594 803406 816735 + 102029923 AGCD01076442;AGCD01076443;GBDK01096360;XM_005414667 XP_005414724 MODEL 8871379 protein-coding Rbl1 RB transcriptional corepressor like 1 ENCODES a protein that exhibits promoter-specific chromatin binding (ortholog); INVOLVED IN negative regulation of cellular senescence (ortholog); negative regulation of gene expression (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN G1/S transition pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 5 (ortholog); congenital disorder of glycosylation (ortholog); focal epilepsy (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955422 24620068 24695203 + 102016391 AGCD01023226;AGCD01023227;GBDF01252467;XM_005384716;XM_005384718;XM_013514137 XP_005384773;XP_005384775;XP_013369591 MODEL 39131363 protein-coding C20orf204 chromosome 20 open reading frame 204 10336146 ncrna LOC106147090 uncharacterized LOC106147090 NW_004955517 3738386 3760814 + 106147090 AGCD01067676;AGCD01067677;AGCD01067678;AGCD01067679;AGCD01067680;GBDF01155331;XR_001231825 MODEL 8742122 protein-coding Rwdd4 RWD domain containing 4 NW_004955403 25211506 25229830 + 102009136 AGCD01002283;AGCD01002284;AGCD01002285;GBDF01153464;XM_005373501;XM_005373502;XM_013513123;XM_013513131 XP_005373558;XP_005373559;XP_013368577;XP_013368585 MODEL 9047603 protein-coding Syt3 synaptotagmin 3 ENCODES a protein that exhibits calcium-dependent phospholipid binding (ortholog); clathrin binding (ortholog); identical protein binding (ortholog); INVOLVED IN positive regulation of dendrite extension (ortholog); positive regulation of vesicle fusion (ortholog); regulation of calcium ion-dependent exocytosis (ortholog); FOUND IN endosome (ortholog); postsynapse (ortholog); synaptic membrane (ortholog) NW_004955559 580453 591938 + 102016319 AGCD01073595;AGCD01073596;AGCD01073597;GBDF01249855;XM_005412775;XM_005412776;XM_013508925 XP_005412832;XP_005412833;XP_013364379 MODEL 8828318 ncrna LOC102017678 uncharacterized LOC102017678 NW_004955423 6813818 6814536 - 102017678 AGCD01023587;GBDK01199497;XR_260958 MODEL 8788360 pseudo LOC102006710 protein C3orf33 pseudogene NW_004955437 718511 719164 - 102006710 AGCD01034156 MODEL 8729775 pseudo LOC102019293 elongation factor 1-beta pseudogene NW_004955424 22092321 22093115 - 102019293 AGCD01024931 MODEL 9064773 protein-coding Tlr3 toll like receptor 3 ENCODES a protein that exhibits double-stranded RNA binding (ortholog); identical protein binding (ortholog); pattern recognition receptor activity (ortholog); INVOLVED IN cellular response to exogenous dsRNA (ortholog); cellular response to interferon-beta (ortholog); cellular response to mechanical stimulus (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH Acute-On-Chronic Liver Failure (ortholog); adult respiratory distress syndrome (ortholog); alcohol dependence (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); early endosome (ortholog) NW_004955403 22977882 23001392 - 102019229 AGCD01002237;AGCD01002238;GBDK01060740;XM_005373437;XM_005373438;XM_005373439;XM_005373440;XM_013512872 XP_005373494;XP_005373495;XP_005373496;XP_005373497;XP_013368326 MODEL 8768729 protein-coding Slc7a10 solute carrier family 7 member 10 ENCODES a protein that exhibits neutral L-amino acid transmembrane transporter activity (ortholog); INVOLVED IN D-alanine transmembrane transport (ortholog); D-serine transmembrane transport (ortholog); glycine transport (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN apical dendrite (ortholog); neuronal cell body (ortholog); plasma membrane (ortholog) NW_004955468 2968720 2984101 - 102025896 AGCD01051849;GBDI01219332;XM_005399981;XM_005399982 XP_005400038;XP_005400039 MODEL 9026956 pseudo LOC102017679 60S ribosomal protein L26 pseudogene NW_004955423 7248916 7249482 + 102017679 AGCD01023595 MODEL 8908424 protein-coding Sstr2 somatostatin receptor 2 ENCODES a protein that exhibits PDZ domain binding (ortholog); protein heterodimerization activity (ortholog); somatostatin receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); cellular response to estradiol stimulus (ortholog); cellular response to glucocorticoid stimulus (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); Experimental Diabetes Mellitus (ortholog); neuroendocrine tumor (ortholog); FOUND IN cytosol (ortholog); G protein-coupled receptor heterodimeric complex (ortholog); membrane (ortholog) NW_004955478 61126 123806 - 102017013 AGCD01055730;AGCD01055731;AGCD01055732;GBCE01034986;XM_005402090;XM_005402091;XR_263680;XR_263681;XR_263682;XR_263683 XP_005402147;XP_005402148 MODEL 8920730 protein-coding Litaf lipopolysaccharide induced TNF factor ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 1 (ortholog); FOUND IN cytoplasmic side of early endosome membrane (ortholog); cytoplasmic side of late endosome membrane (ortholog); cytoplasmic side of lysosomal membrane (ortholog) NW_004955442 7054418 7084973 + 102027463 AGCD01037613;GBBH01210558;XM_005391161;XM_013517903 XP_005391218;XP_013373357 MODEL 9019222 trna Trnal-cag transfer RNA leucine (anticodon CAG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955483;NW_004955433;NW_004955433;NW_004955462 363663;14941261;14940923;14719898 363745;14941343;14941005;14719980 -;-;+;+ 101978793 AGCD01031735;AGCD01049456;AGCD01057606 MODEL 8701528 protein-coding Rlbp1 retinaldehyde binding protein 1 ENCODES a protein that exhibits 11-cis retinal binding (ortholog); PARTICIPATES IN altered retinoid cycle metabolic pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH Alpers-Huttenlocher syndrome (ortholog); Bloom syndrome (ortholog); Bothnia retinal dystrophy (ortholog); FOUND IN cell body (ortholog); centrosome (ortholog); cytosol (ortholog) NW_004955416 15862510 15873261 + 102003653 AGCD01017346;GBDF01112309;XM_005381557;XM_005381558;XM_005381559 XP_005381614;XP_005381615;XP_005381616 MODEL 8845758 protein-coding LOC102011631 solute carrier family 40 member 1-like NW_004955410 25194888 25237636 - 102011631 AGCD01011145;GBDK01125549;XM_013510582 XP_013366036 MODEL 8826537 pseudo LOC102008170 40S ribosomal protein S18-like NW_004955617 165313 165780 + 102008170 AGCD01077271 MODEL 8962639 protein-coding Whrn whirlin ENCODES a protein that exhibits identical protein binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); cerebellar Purkinje cell layer formation (ortholog); detection of mechanical stimulus involved in sensory perception of sound (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Aland Island eye disease (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 31 (ortholog); FOUND IN actin filament (ortholog); apical dendrite (ortholog); axon collateral (ortholog) NW_004955419 13116001 13207266 + 102010486 AGCD01019996;AGCD01019997;GBDK01284958;XM_005382629;XM_005382630;XM_005382631;XM_005382633;XM_013513190;XM_013513191 XP_005382686;XP_005382687;XP_005382688;XP_005382690;XP_013368644;XP_013368645 MODEL 8927906 protein-coding LOC102005653 cytochrome c oxidase subunit 5A, mitochondrial ENCODES a protein that exhibits cytochrome-c oxidase activity (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); COVID-19 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955450 3036387 3049121 + 102005653 AGCD01042420;GBCQ01008019;XM_005393528;XM_005393529 XP_005393585;XP_005393586 MODEL 8806811 protein-coding Ppib peptidylprolyl isomerase B ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); RNA polymerase binding (ortholog); INVOLVED IN bone development (ortholog); chaperone-mediated protein folding (ortholog); neutrophil chemotaxis (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum chaperone complex (ortholog); nucleoplasm (ortholog) NW_004955450 11241279 11246628 + 102019007 AGCD01042652;GBCE01002181;XM_005393760 XP_005393817 MODEL 9037872 protein-coding LOC102023844 chromosome unknown open reading frame, human C6orf89 INVOLVED IN autophagy (ortholog); chromatin remodeling (ortholog); collagen metabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); Golgi membrane (ortholog); midbody (ortholog) NW_004955437 6087297 6124219 - 102023844 AGCD01034414;AGCD01034415;AGCD01034416;AGCD01034417;GBCE01052717;XM_005389633;XM_013517007;XM_013517008 XP_005389690;XP_013372461;XP_013372462 MODEL 8863316 ncrna LOC102015805 uncharacterized LOC102015805 NW_004955406 28240519 28241931 + 102015805 AGCD01006295;XR_259506 MODEL 10341818 protein-coding Smkr1 small lysine rich protein 1 ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955479 10288231 10288701 + 106146451 AGCD01056534;GBDF01008125;GBDI01069663;XM_013503303 XP_013358757 MODEL 9044392 protein-coding LOC102011198 signal-regulatory protein beta-1 NW_004955415 12897443 12955738 - 102011198 AGCD01016236;AGCD01016237;GBCE01043667;XM_013512246;XM_013512247;XM_013512248 XP_013367700;XP_013367701;XP_013367702 MODEL 8713342 ncrna LOC102012041 uncharacterized LOC102012041 NW_004955402 6962055 6984367 - 102012041 AGCD01000163;GBDF01177670;XR_001235410;XR_001235416;XR_001235420;XR_001235423;XR_259036 MODEL 8810849 protein-coding Rad54l RAD54 like ENCODES a protein that exhibits ATP-dependent DNA/DNA annealing activity (ortholog); INVOLVED IN chromosome organization (ortholog); determination of adult lifespan (ortholog); DNA damage response (ortholog); ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); breast ductal carcinoma (ortholog); FOUND IN nucleoplasm (ortholog); protein-containing complex (ortholog) NW_004955464 11996512 12033525 - 102020542 AGCD01050170;AGCD01050171;AGCD01050172;AGCD01050173;GBDI01210773;XM_005398677;XM_005398678;XM_005398680 XP_005398734;XP_005398735;XP_005398737 MODEL 10325184 ncrna LOC106147091 uncharacterized LOC106147091 NW_004955518 1027892 1038741 - 106147091 AGCD01067755;GBBH01168264;XR_001231831 MODEL 8775355 protein-coding Pcdh19 protocadherin 19 ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog) NW_004955503 6428894 6567253 - 102019412 AGCD01064758;AGCD01064759;AGCD01064760;AGCD01064761;GBDF01056580;XM_005406928;XM_005406929;XM_005406930;XM_013505862 XP_005406985;XP_005406986;XP_005406987;XP_013361316 MODEL 8742731 protein-coding LOC102003815 vomeronasal type-2 receptor 116-like NW_004955563 73850 94496 - 102003815 AGCD01074040;AGCD01074041;AGCD01074042;XM_005413096 XP_005413153 MODEL 10354886 ncrna LOC106149928 uncharacterized LOC106149928 NW_004955457 12921287 12930631 + 106149928 AGCD01047033;XR_001236411 MODEL 8712285 protein-coding LOC102023845 chromosome unknown open reading frame, human C14orf180 ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); hepatocellular carcinoma (ortholog); immunodeficiency 132A (ortholog); FOUND IN plasma membrane (ortholog) NW_004955538 3076578 3083867 + 102023845 AGCD01071145;GBDJ01239820;XM_005410829;XM_005410830;XM_005410831;XM_005410832;XM_005410833;XM_005410835;XM_013507905 XP_005410886;XP_005410887;XP_005410888;XP_005410889;XP_005410890;XP_005410892;XP_013363359 MODEL 9049626 protein-coding Ptger2 prostaglandin E receptor 2 ENCODES a protein that exhibits prostaglandin E receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cellular response to prostaglandin E stimulus (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH aspirin-induced respiratory disease (ortholog); asthma, nasal polyps, and aspirin intolerance (ortholog); endometriosis (ortholog); FOUND IN plasma membrane (ortholog) NW_004955409 10760801 10775197 - 102010556 AGCD01009482;AGCD01009483;GBDJ01164140;XM_005376782;XM_005376783;XM_013510326;XM_013510327 XP_005376839;XP_005376840;XP_013365780;XP_013365781 MODEL 9031589 pseudo LOC102003820 40S ribosomal protein S16 pseudogene NW_004955579 331808 332248 - 102003820 AGCD01075545 MODEL 9050628 ncrna LOC102018808 uncharacterized LOC102018808 NW_004955409 12167060 12175776 - 102018808 AGCD01009538;GBCE01171561;XR_001232649 MODEL 10201666 ncrna LOC106149929 uncharacterized LOC106149929 NW_004955457 12855868 12856884 + 106149929 AGCD01047028;GBCB01050707;XR_001236412 MODEL 8727505 protein-coding Pink1 PTEN induced kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); C3HC4-type RING finger domain binding (ortholog); kinase activity (ortholog); INVOLVED IN autophagy of mitochondrion (ortholog); catecholamine secretion (ortholog); cellular response to hydrogen sulfide (ortholog); PARTICIPATES IN altered mitochondrial autophagy pathway; mitochondria dynamics pathway; mitochondrial autophagy pathway; ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); cognitive disorder (ortholog); congenital disorder of glycosylation (ortholog); FOUND IN astrocyte projection (ortholog); axon (ortholog); cell body (ortholog) NW_004955452 1171115 1186338 + 102011271 AGCD01043834;AGCD01043835;GBBH01034979;GBDF01010551;XM_013519660 XP_013375114 MODEL 8964005 pseudo LOC102007082 plastin-3 pseudogene NW_004955452 11705919 11707877 + 102007082 AGCD01044343 MODEL 8906577 protein-coding Sf3b4 splicing factor 3b subunit 4 ENCODES a protein that exhibits splicing factor binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH cataract 46 juvenile-onset (ortholog); cervical cancer (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN nucleus (ortholog); spliceosomal complex (ortholog); U12-type spliceosomal complex (ortholog) NW_004955413 826190 830502 + 102021955 AGCD01013491;GBDF01082584;XM_005378708 XP_005378765 MODEL 8803441 protein-coding Rlf RLF zinc finger ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN negative regulation of heterochromatin formation (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog) NW_004955452 17588066 17687553 + 102005439 AGCD01044561;AGCD01044562;AGCD01044563;AGCD01044564;AGCD01044565;AGCD01044566;AGCD01044567;AGCD01044568;AGCD01044569;AGCD01044570;AGCD01044571;AGCD01044572;GBDF01188771;XM_005395279;XM_013519549 XP_005395336;XP_013375003 MODEL 9048480 protein-coding LOC102005656 retinol dehydrogenase 7-like NW_004955641 46039 49565 - 102005656 AGCD01077703;AGCD01077704;XM_005415046 XP_005415103 MODEL 8850193 protein-coding Padi4 peptidyl arginine deiminase 4 ENCODES a protein that exhibits calcium ion binding (ortholog); histone arginine deiminase activity (ortholog); histone H3R17 arginine deiminase activity (ortholog); INVOLVED IN chromatin organization (ortholog); chromatin remodeling (ortholog); nucleosome assembly (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); chromosome 1p36 deletion syndrome (ortholog); FOUND IN nucleus (ortholog); protein-containing complex (ortholog) NW_004955527 1536917 1560508 - 102022736 AGCD01069407;GBBH01115825;XM_005409815;XM_013507411;XM_013507412 XP_005409872;XP_013362865;XP_013362866 MODEL 8780185 ncrna LOC102018813 uncharacterized LOC102018813 NW_004955462 2479323 2494809 + 102018813 AGCD01049169;GBDJ01029436;XR_001236615 MODEL 8946513 protein-coding LOC102015807 40S ribosomal protein S2-like NW_004955407 42481379 42485367 + 102015807 AGCD01007892;GBDF01023024;XM_005375924 XP_005375981 MODEL 8987206 protein-coding Syt4 synaptotagmin 4 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); clathrin binding (ortholog); INVOLVED IN dense core granule cytoskeletal transport (ortholog); memory (ortholog); negative regulation of calcium ion-dependent exocytosis (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); Experimental Seizures (ortholog); intellectual disability (ortholog); FOUND IN astrocyte projection (ortholog); axon (ortholog); dendrite (ortholog) NW_004955402 29195124 29204816 - 102021928 AGCD01000738;GBDI01097828;XM_005372850;XM_005372851;XM_005372852 XP_005372907;XP_005372908;XP_005372909 MODEL 8732879 protein-coding Tspan7 tetraspanin 7 INVOLVED IN regulation of postsynaptic neurotransmitter receptor internalization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); intellectual disability (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN postsynapse (ortholog) NW_004955566 75576 203512 + 102007825 AGCD01074344;GBBH01119190;XM_005413275 XP_005413332 MODEL 8953689 pseudo LOC102011201 40S ribosomal protein S27-like pseudogene NW_004955477 3377398 3380933 - 102011201 AGCD01055553 MODEL 8888167 pseudo LOC102013252 ataxin-1-like NW_004955456 14143590 14145611 + 102013252 AGCD01046634 MODEL 8845162 protein-coding LOC102021041 melanoma-associated antigen B10-like NW_004955531 3152723 3156891 - 102021041 AGCD01070062;AGCD01070063;GBDF01042268;XM_005410141 XP_005410198 MODEL 8921312 protein-coding Ndufaf8 NADH:ubiquinone oxidoreductase complex assembly factor 8 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); mitochondrial metabolism disease (ortholog); nuclear type mitochondrial complex I deficiency 34 (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955506 1771044 1773471 - 102010605 AGCD01065273;GBDK01348130;XM_005407296 XP_005407353 MODEL 8745834 protein-coding Sox12 SRY-box transcription factor 12 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN positive regulation of regulatory T cell differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); spinal cord development (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN nucleoplasm (ortholog); protein-DNA complex (ortholog) NW_004955597 225796 229350 + 102026174 AGCD01076548;GBCB01087162;XM_013510026 XP_013365480 MODEL 8775748 protein-coding Poglut3 protein O-glucosyltransferase 3 ENCODES a protein that exhibits UDP-glucosyltransferase activity (ortholog); UDP-xylosyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation via serine (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); beta-ketothiolase deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog) NW_004955412 10582169 10598153 - 102014338 AGCD01012771;GBCE01045208;GBCE01045210;XM_013511000 XP_013366454 MODEL 9041710 ncrna LOC102010830 uncharacterized LOC102010830 NW_004955513 2631451 2640898 - 102010830 AGCD01066883;GBDF01209406;XR_264458 MODEL 8846598 protein-coding LOC102017681 microtubule-associated tumor suppressor candidate 2-like NW_004955497 8132720 8368038 + 102017681 AGCD01062697;AGCD01062698;AGCD01062699;AGCD01062700;AGCD01062701;AGCD01062702;AGCD01062703;AGCD01062704;GBDF01251346;XM_005406382 XP_005406439 MODEL 8950385 ncrna LOC102023846 uncharacterized LOC102023846 NW_004955540 1222373 1241453 - 102023846 AGCD01071297;GBDF01079077;XR_264817 MODEL 8833482 protein-coding Sstr3 somatostatin receptor 3 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN cellular response to estradiol stimulus (ortholog); cellular response to glucocorticoid stimulus (ortholog); cerebellum development (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Brain Injuries (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); FOUND IN ciliary membrane (ortholog); cilium (ortholog); neuron projection (ortholog) NW_004955413 23677693 23683939 - 102029066 AGCD01014333;GBDK01269462;XM_005379193;XM_005379194 XP_005379250;XP_005379251 MODEL 8877772 protein-coding Pglyrp4 peptidoglycan recognition protein 4 ENCODES a protein that exhibits peptidoglycan binding (ortholog); peptidoglycan immune receptor activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); biological process involved in interaction with host (ortholog); defense response to Gram-positive bacterium (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955592 100022 111609 + 102006519 AGCD01076300;GBDI01104792;XM_005414604;XM_013509967;XM_013509968;XM_013509969;XM_013509970;XM_013509971;XM_013509972;XM_013509973;XM_013509974 XP_005414661;XP_013365421;XP_013365422;XP_013365423;XP_013365424;XP_013365425;XP_013365426;XP_013365427;XP_013365428 MODEL 39131435 protein-coding C21orf62 chromosome 21 open reading frame 62 8962795 protein-coding Trappc8 trafficking protein particle complex subunit 8 INVOLVED IN collagen biosynthetic process (ortholog); Golgi organization (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN TRAPP complex (ortholog) NW_004955402 19130393 19223019 - 102019001 AGCD01000547;AGCD01000548;AGCD01000549;GBBH01193692;GBDK01235353;XM_005372745;XM_005372747;XR_001231969 XP_005372802;XP_005372804 MODEL 39133407 snrna U4 U4 spliceosomal RNA 8961829 protein-coding Rxfp1 relaxin family peptide receptor 1 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); hormone binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); extracellular matrix organization (ortholog); ASSOCIATED WITH endometriosis (ortholog); megacolon (ortholog) NW_004955471 8860906 8963016 - 102009710 AGCD01053196;GBDJ01229708;XM_005400936;XM_005400937;XM_005400938;XM_013522859;XM_013522860;XM_013522861 XP_005400993;XP_005400994;XP_005400995;XP_013378313;XP_013378314;XP_013378315 MODEL 9021064 protein-coding Slc31a2 solute carrier family 31 member 2 ENCODES a protein that exhibits copper ion transmembrane transporter activity (ortholog); INVOLVED IN copper ion import (ortholog); copper ion transmembrane transport (ortholog); copper ion transport (ortholog); FOUND IN late endosome (ortholog); late endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955419 14332749 14343363 - 102027749 AGCD01020016;GBCQ01036886;XM_005382692 XP_005382749 MODEL 39131382 protein-coding PYGO2 pygopus family PHD finger 2 8881808 ncrna LOC102005660 uncharacterized LOC102005660 NW_004955404 45053525 45082173 - 102005660 AGCD01004437;XR_001234995;XR_259339 MODEL 8890102 ncrna LOC102023487 uncharacterized LOC102023487 NW_004955493 6918924 6924538 + 102023487 AGCD01061147;AGCD01061148;GBDI01319978;XR_001231270 MODEL 9024007 pseudo LOC102008985 60S ribosomal protein L32 pseudogene NW_004955437 1108077 1108584 + 102008985 AGCD01034190 MODEL 10376168 ncrna LOC106147092 uncharacterized LOC106147092 NW_004955518 4747515 4749907 + 106147092 AGCD01067837;GBDJ01211909;XR_001231832 MODEL 15036851 trna Trnal-gag transfer RNA leucine (anticodon GAG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978791 8881977 protein-coding LOC102011202 circumsporozoite protein-like NW_004955478 6863782 6864540 - 102011202 AGCD01055921;AGCD01055922;XM_005402156;XM_013503235;XM_013503236;XM_013503237 XP_005402213;XP_013358689;XP_013358690;XP_013358691 MODEL 8867241 ncrna LOC102012054 uncharacterized LOC102012054 NW_004955405 38958635 38968152 + 102012054 AGCD01005493;GBDK01428567;XR_259444 MODEL 39131383 protein-coding PTGER3 prostaglandin E receptor 3 8724513 protein-coding Syt5 synaptotagmin 5 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); clathrin binding (ortholog); INVOLVED IN regulation of calcium ion-dependent exocytosis (ortholog); ASSOCIATED WITH hypertrophic cardiomyopathy (ortholog); nemaline myopathy 5A (ortholog); FOUND IN dense core granule (ortholog); neuron projection (ortholog); neuronal cell body (ortholog) NW_004955567 1018433 1024477 + 102003705 AGCD01074453;GBDF01243336;XM_005413351 XP_005413408 MODEL 9052842 protein-coding Ndufb1 NADH:ubiquinone oxidoreductase subunit B1 ASSOCIATED WITH achondrogenesis type IA (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nuclear speck (ortholog) NW_004955438 14443558 14449754 - 102013546 AGCD01035346;GBDF01084776;XM_005390443 XP_005390500 MODEL 8737194 protein-coding LOC102008576 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-like NW_004955546 1452766 1495831 + 102008576 AGCD01072068;AGCD01072069;GBBH01214822;GBDI01370020;XM_013508414 XP_013363868 MODEL 9018406 protein-coding Rbl2 RB transcriptional corepressor like 2 ENCODES a protein that exhibits promoter-specific chromatin binding (ortholog); INVOLVED IN negative regulation of gene expression (ortholog); regulation of lipid kinase activity (ortholog); PARTICIPATES IN G1/S transition pathway; ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); BRUNET-WAGNER NEURODEVELOPMENTAL SYNDROME (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytosol (ortholog) NW_004955433 11185726 11237645 + 102028222 AGCD01031649;GBDJ01191912;XM_005388302;XM_005388305;XM_005388307;XM_013516218 XP_005388359;XP_005388362;XP_005388364;XP_013371672 MODEL 8972043 protein-coding Plekha3 pleckstrin homology domain containing A3 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); ASSOCIATED WITH dilated cardiomyopathy 1G (ortholog); dystonia 16 (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955403 18347309 18366503 - 102025747 AGCD01002097;GBCE01098308;GBDK01139966;XM_013512613 XP_013368067 MODEL 8916035 pseudo LOC102011203 multifunctional protein ADE2 pseudogene NW_004955481 3893416 3894341 + 102011203 AGCD01056921;XR_263775 MODEL 8914120 protein-coding LOC102012056 basic proline-rich protein-like NW_004955406 37370333 37389779 + 102012056 AGCD01006576;GBDF01003978;XM_005375168;XR_001236862 XP_005375225 MODEL 8773654 protein-coding Ppic peptidylprolyl isomerase C ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); ASSOCIATED WITH Congenital Lower Urinary Tract Obstruction (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955521 1138779 1143345 - 102021698 AGCD01068173;AGCD01068174;GBCQ01070591;GBCQ01098286;XM_013507085 XP_013362539 MODEL 8755516 protein-coding Rlig1 RNA 5'-phosphate and 3'-OH ligase 1 ENCODES a protein that exhibits RNA ligase (ATP) activity (ortholog); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); response to reactive oxygen species (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 14 (ortholog); cone-rod dystrophy (ortholog) NW_004955405 25514644 25533520 + 102009679 AGCD01005177;GBDF01081483;XM_005374420 XP_005374477 MODEL 8777407 protein-coding Sf3b5 splicing factor 3b subunit 5 ENCODES a protein that exhibits RNA binding (ortholog); splicing factor binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 4 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); U12-type spliceosomal complex (ortholog) NW_004955436 16380412 16381373 + 102004851 AGCD01033915;GBBH01031902;XM_005389240 XP_005389297 MODEL 9012315 protein-coding Tlr4 toll like receptor 4 ENCODES a protein that exhibits identical protein binding (ortholog); lipopolysaccharide binding (ortholog); lipopolysaccharide immune receptor activity (ortholog); INVOLVED IN activation of innate immune response (ortholog); astrocyte development (ortholog); B cell proliferation (ortholog); PARTICIPATES IN titanium dioxide nanoparticle response pathway; Toll-like receptor signaling pathway; ASSOCIATED WITH Acanthamoeba Keratitis (ortholog); Acne Conglobata (ortholog); Acute Coronary Syndrome (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); endosome membrane (ortholog) NW_004955419 10190937 10201896 - 102030080 AGCD01019939;GBBH01209662;XM_005382606 XP_005382663 MODEL 39133408 snrna U4 U4 spliceosomal RNA 9064744 protein-coding Rad54l2 RAD54 like 2 ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); protein kinase binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog) NW_004955532 3177655 3271683 + 102017811 AGCD01070270;AGCD01070271;AGCD01070272;AGCD01070273;AGCD01070274;AGCD01070275;GBDF01252419;XM_005410317;XM_005410318 XP_005410374;XP_005410375 MODEL 8792663 protein-coding Trappc9 trafficking protein particle complex subunit 9 INVOLVED IN cerebral cortex development (ortholog); neuron differentiation (ortholog); positive regulation of NF-kappaB transcription factor activity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive intellectual developmental disorder 13 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); Golgi apparatus (ortholog) NW_004955461 13498088 14130159 - 102022477 AGCD01049041;AGCD01049042;AGCD01049043;AGCD01049044;AGCD01049045;AGCD01049046;GBCB01060669;XM_013521331;XM_013521332;XM_013521333;XM_013521334;XM_013521335 XP_013376785;XP_013376786;XP_013376787;XP_013376788;XP_013376789 MODEL 8808513 protein-coding Padi6 peptidyl arginine deiminase 6 ENCODES a protein that exhibits identical protein binding (ortholog); protein-arginine deiminase activity (ortholog); structural constituent of cytoplasmic lattice (ortholog); INVOLVED IN cytoplasm organization (ortholog); cytoskeleton organization (ortholog); embryonic cleavage (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); Oocyte/Zygote/Embryo Maturation Arrest 16 (ortholog); FOUND IN cortical granule (ortholog); cytoplasm (ortholog); cytoplasmic lattice (ortholog) NW_004955527 1515796 1531420 - 102022421 AGCD01069407;GBDF01211174;XM_013507407 XP_013362861 MODEL 39131458 protein-coding LITAFD LITAF domain containing 8926822 ncrna LOC102015808 uncharacterized LOC102015808 NW_004955408 11586604 11635608 - 102015808 AGCD01008312;AGCD01008313;AGCD01008314;XR_259679 MODEL 8849920 pseudo LOC102011632 dnaJ homolog subfamily B member 6-like NW_004955410 15884222 15890903 + 102011632 AGCD01010941 MODEL 8856231 protein-coding Rxfp2 relaxin family peptide receptor 2 ENCODES a protein that exhibits peptide hormone binding (ortholog); protein-hormone receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); male gonad development (ortholog); ASSOCIATED WITH cryptorchidism (ortholog); disorder of sexual development (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN plasma membrane (ortholog) NW_004955431 14050537 14105852 - 102016505 AGCD01030318;AGCD01030319;GBDF01231821;XM_013515731 XP_013371185 MODEL 10210988 protein-coding LOC106146824 multiple epidermal growth factor-like domains protein 6 NW_004955497 91307 115495 + 106146824 AGCD01062401;XM_013505447 XP_013360901 MODEL 8979708 protein-coding Tspan8 tetraspanin 8 ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN negative regulation of blood coagulation (ortholog); regulation of gene expression (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Arterial Occlusive Diseases (ortholog); breast ductal carcinoma (ortholog); FOUND IN cell surface (ortholog) NW_004955405 11200290 11233094 - 102030592 AGCD01004827;GBBH01001841;XM_005374318 XP_005374375 MODEL 8790356 protein-coding LOC102003821 HLA class I histocompatibility antigen, B-14 alpha chain-like NW_004955583 520916 524888 + 102003821 AGCD01075833;AGCD01075834;GBBH01118053;XM_013509777 XP_013365231 MODEL 8716337 pseudo LOC102017682 deoxynucleotidyltransferase terminal-interacting protein 2 pseudogene NW_004955498 2146251 2152131 + 102017682 AGCD01062766;AGCD01062767 MODEL 8868138 protein-coding Rad9a RAD9 checkpoint clamp component A ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); enzyme binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN cellular response to ionizing radiation (ortholog); DNA damage checkpoint signaling (ortholog); DNA damage response (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); immunodeficiency 90 (ortholog); intellectual disability (ortholog); FOUND IN checkpoint clamp complex (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955422 18079634 18146122 - 102021357 AGCD01022936;AGCD01022937;GBBH01142846;XM_005384341;XM_005384342;XM_005384343;XM_013513939;XM_013513940;XM_013513941;XM_013513942;XM_013513943 XP_005384398;XP_005384399;XP_005384400;XP_013369393;XP_013369394;XP_013369395;XP_013369396;XP_013369397 MODEL 9029822 protein-coding Wif1 WNT inhibitory factor 1 INVOLVED IN positive regulation of fat cell differentiation (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH breast cancer (ortholog); Colorectal Neoplasms (ortholog); Endometrioid Carcinomas (ortholog) NW_004955458 11755147 11834047 - 102009152 AGCD01047759;AGCD01047760;GBBH01163275;GBCE01002151;XM_013521009 XP_013376463 MODEL 8937013 protein-coding Sstr5 somatostatin receptor 5 ENCODES a protein that exhibits somatostatin receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); cellular response to glucocorticoid stimulus (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN bipolar disorder pathway; ASSOCIATED WITH bipolar disorder (ortholog); epilepsy (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN plasma membrane (ortholog) NW_004955442 16169069 16176054 - 102013221 AGCD01037893;XM_005391595 XP_005391652 MODEL 8773708 protein-coding Tspan9 tetraspanin 9 INVOLVED IN collagen-activated tyrosine kinase receptor signaling pathway (ortholog); mitocytosis (ortholog); neutrophil homeostasis (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN membrane (ortholog); migrasome (ortholog); plasma membrane (ortholog) NW_004955429 18696528 18772593 + 102026660 AGCD01028921;GBDF01307566;XM_005387133 XP_005387190 MODEL 9056748 protein-coding Bcl6 BCL6 transcription repressor ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); B cell differentiation (ortholog); B cell proliferation (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH B-cell lymphoma (ortholog); diffuse large B-cell lymphoma (ortholog); Gastrointestinal Hemorrhage (ortholog); FOUND IN Golgi apparatus (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955420 19998960 20021200 + 102023603 AGCD01021070;GBCQ01038861;XM_005383244;XM_005383245;XM_005383246;XM_005383247;XM_005383248;XM_013513551 XP_005383301;XP_005383302;XP_005383303;XP_005383304;XP_005383305;XP_013369005 MODEL 8738007 protein-coding LOC102008580 uncharacterized LOC102008580 NW_004955558 1650552 1710254 + 102008580 AGCD01073456;AGCD01073457;AGCD01073458;AGCD01073459;AGCD01073460;AGCD01073461;AGCD01073462;XM_013508849 XP_013364303 MODEL 8990779 protein-coding Spaca4 sperm acrosome associated 4 INVOLVED IN binding of sperm to zona pellucida (ortholog); fertilization (ortholog); FOUND IN inner acrosomal membrane (ortholog); outer acrosomal membrane (ortholog) NW_004955559 1937747 1938789 - 102008901 AGCD01073682;GBDF01009196;XM_005412948 XP_005413005 MODEL 9031797 protein-coding Pdrg1 p53 and DNA damage regulated 1 ASSOCIATED WITH Liver Neoplasms (ortholog); FOUND IN RPAP3/R2TP/prefoldin-like complex (ortholog) NW_004955422 29052599 29059727 + 102012214 AGCD01023378;GBDF01085394;XM_005384881;XM_013514201 XP_005384938;XP_013369655 MODEL 8857061 protein-coding LOC102018816 uncharacterized LOC102018816 NW_004955412 18081520 18091575 + 102018816 AGCD01012924;GBDF01160803;XM_013510954;XM_013510955;XM_013510956;XM_013510958;XM_013510959 XP_013366408;XP_013366409;XP_013366410;XP_013366412;XP_013366413 MODEL 8961285 ncrna LOC102013261 uncharacterized LOC102013261 NW_004955410 25529093 25547298 + 102013261 AGCD01011158;AGCD01011159;GBDJ01166591;XR_001232700;XR_259865 MODEL 8944716 protein-coding Prr3 proline rich 3 ASSOCIATED WITH megacolon (ortholog) NW_004955583 580630 584418 + 102015677 AGCD01075840;GBBH01187837;GBCQ01153159;XM_013509795;XR_001232500 XP_013365249 MODEL 8777601 pseudo LOC102008986 transcription elongation factor A N-terminal and central domain-containing protein-like NW_004955438 5285314 5286378 - 102008986 AGCD01035064 MODEL 8787254 protein-coding LOC102023492 interferon-induced guanylate-binding protein 1-like NW_004955423 5260597 5285902 + 102023492 AGCD01023558;XM_005385355 XP_005385412 MODEL 8873610 protein-coding LOC102008171 exonuclease 3'-5' domain-containing protein 1-like NW_004956095 1189 6900 - 102008171 AGCD01079041;AGCD01079042;AGCD01079043;GBDJ01296153;GBDK01051647;XM_005415168 XP_005415225 MODEL 39133410 snrna U4 U4 spliceosomal RNA 8998782 protein-coding LOC102009733 probable N-acetyltransferase CML1 NW_004955424 11899258 11900803 - 102009733 AGCD01024576;GBCQ01149453;XM_013514700 XP_013370154 MODEL 8930553 ncrna LOC102010832 uncharacterized LOC102010832 NW_004955437 2142308 2145021 + 102010832 AGCD01034260;GBDF01276932;XR_261830 MODEL 8778956 trna Trnal-uaa transfer RNA leucine (anticodon UAA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955465;NW_004955436;NW_004955465 13142581;16282643;13312190 13142663;16282725;13312272 -;-;- 101978788 AGCD01033911;AGCD01050590;AGCD01050597 MODEL 8882792 protein-coding LOC102006713 keratin, type II cuticular Hb1-like NW_004955547 2624360 2629144 + 102006713 AGCD01072287;GBDF01003670;XM_013508439 XP_013363893 MODEL 8848780 protein-coding Pgm1 phosphoglucomutase 1 ENCODES a protein that exhibits magnesium ion binding (ortholog); phosphoglucomutase activity (ortholog); INVOLVED IN cellular response to magnetism (ortholog); galactose catabolic process via UDP-galactose, Leloir pathway (ortholog); glucose metabolic process (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; fructose-1,6-bisphosphatase deficiency pathway; galactokinase deficiency pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Colorectal Neoplasms (ortholog); congenital disorder of glycosylation (ortholog); FOUND IN Z disc (ortholog) NW_004955423 26408775 26437527 - 102003887 AGCD01024096;GBBH01178702;XM_005385325 XP_005385382 MODEL 9046172 protein-coding Syt6 synaptotagmin 6 ENCODES a protein that exhibits calcium-dependent phospholipid binding (ortholog); calcium-dependent protein binding (ortholog); clathrin binding (ortholog); INVOLVED IN acrosomal vesicle exocytosis (ortholog); acrosome reaction (ortholog); postsynaptic dense core vesicle exocytosis (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); hereditary spastic paraplegia 47 (ortholog); invasive ductal carcinoma (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955435 17349971 17405526 - 102018218 AGCD01033352;AGCD01033353;AGCD01033354;GBDJ01026178;XM_005388999 XP_005389056 MODEL 8915616 pseudo LOC102017683 fatty acid-binding protein, liver-like NW_004955424 757151 760005 + 102017683 AGCD01024207 MODEL 9020423 protein-coding Rexo5 RNA exonuclease 5 FOUND IN nucleolus (ortholog) NW_004955493 103588 144412 + 102028764 AGCD01060838;AGCD01060839;GBDK01195535;XM_005405029;XM_005405030;XM_005405032;XM_005405033 XP_005405086;XP_005405087;XP_005405089;XP_005405090 MODEL 9052015 ncrna LOC102011204 uncharacterized LOC102011204 NW_004955418 503166 505034 - 102011204 AGCD01018678;GBDF01041809;XR_260531 MODEL 8918912 protein-coding Slc32a1 solute carrier family 32 member 1 ENCODES a protein that exhibits gamma-aminobutyric acid transmembrane transporter activity (ortholog); gamma-aminobutyric acid:proton antiporter activity (ortholog); glycine transmembrane transporter activity (ortholog); INVOLVED IN beta-alanine transport (ortholog); gamma-aminobutyric acid import (ortholog); gamma-aminobutyric acid transport (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); Developmental and Epileptic Encephalopathy 114 (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cell surface (ortholog); cell tip (ortholog); cone cell pedicle (ortholog) NW_004955445 18033128 18038002 - 102009772 AGCD01039898;XM_005392531 XP_005392588 MODEL 9019408 protein-coding Sox13 SRY-box transcription factor 13 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN gamma-delta T cell differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); familial adult myoclonic epilepsy 5 (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955406 39959458 39994214 + 102016667 AGCD01006649;AGCD01006650;GBCE01186528;XM_005375280;XM_005375281;XM_013522670 XP_005375337;XP_005375338;XP_013378124 MODEL 8977943 protein-coding Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component ENCODES a protein that exhibits chromatin binding (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); endodermal cell fate commitment (ortholog); mRNA 3'-end processing (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; ASSOCIATED WITH maturity-onset diabetes of the young type 1 (ortholog); peroxisome biogenesis disorder 1A (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN Cdc73/Paf1 complex (ortholog); cytoplasm (ortholog); fibrillar center (ortholog) NW_004955468 166477 172200 + 102023017 AGCD01051684;GBDF01010852;XM_005399775 XP_005399832 MODEL 8876895 protein-coding Trarg1 trafficking regulator of GLUT4 (SLC2A4) 1 INVOLVED IN cellular response to insulin stimulus (ortholog); endosome to plasma membrane protein transport (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH Bifid Femur with Monodactylous Ectrodactyly (ortholog); chromosome 17p13.3 duplication syndrome (ortholog); Split-Hand/Foot Malformation with Long Bone Deficiency 3 (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); perinuclear region of cytoplasm (ortholog); plasma membrane (ortholog) NW_004955481 2775426 2789929 + 102029742 AGCD01056884;GBCE01105605;XM_005402650 XP_005402707 MODEL 8882175 protein-coding Pogz pogo transposable element derived with ZNF domain INVOLVED IN double-strand break repair via homologous recombination (ortholog); kinetochore assembly (ortholog); mitotic sister chromatid cohesion (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Developmental Disabilities (ortholog); Dravet syndrome (ortholog); FOUND IN chromatin (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955589 920729 975242 + 102020969 AGCD01076184;AGCD01076185;GBCE01188432;XM_005414572;XM_005414573;XM_013509945;XM_013509946;XM_013509947;XM_013509948 XP_005414629;XP_005414630;XP_013365399;XP_013365400;XP_013365401;XP_013365402 MODEL 9010445 protein-coding Tlr5 toll like receptor 5 ENCODES a protein that exhibits interleukin-1 receptor binding (ortholog); pattern recognition receptor activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to mechanical stimulus (ortholog); male gonad development (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); alcohol use disorder (ortholog); ankylosing spondylitis (ortholog); FOUND IN plasma membrane (ortholog) NW_004955520 1544840 1562081 + 102013533 AGCD01068058;GBDI01310659;XM_013507068;XM_013507069;XM_013507070;XM_013507071;XM_013507073;XM_013507074;XR_001231877;XR_001231878;XR_001231879;XR_001231880 XP_013362522;XP_013362523;XP_013362524;XP_013362525;XP_013362527;XP_013362528 MODEL 8813158 protein-coding Pym1 PYM homolog 1, exon junction complex associated factor ENCODES a protein that exhibits ribosome binding (ortholog); INVOLVED IN exon-exon junction complex disassembly (ortholog); nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); positive regulation of translation (ortholog); FOUND IN cell junction (ortholog); cytosol (ortholog); exon-exon junction complex (ortholog) NW_004955458 3499217 3515108 - 102024190 AGCD01047310;AGCD01047311;AGCD01047312;AGCD01047313;AGCD01047314;GBBH01187590;GBDI01138449;XM_005397268 XP_005397325 MODEL 8716128 ncrna LOC102008990 uncharacterized LOC102008990 NW_004955549 117973 173721 + 102008990 AGCD01072419;GBDF01076042;XR_001232252;XR_264912 MODEL 8717155 pseudo LOC102007084 signal transducer CD24 pseudogene NW_004955406 23812162 23812599 - 102007084 AGCD01006185 MODEL 8765904 protein-coding Sik2 salt inducible kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN insulin receptor signaling pathway (ortholog); intracellular signal transduction (ortholog); negative regulation of glycolytic process (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); Carney-Stratakis syndrome (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog); nucleus (ortholog) NW_004955412 13342032 13458076 + 102017966 AGCD01012833;AGCD01012834;AGCD01012835;AGCD01012836;GBCB01023497;GBDK01238669;XM_005378076 XP_005378133 MODEL 9032128 protein-coding Smlr1 small leucine rich protein 1 NW_004955436 11639564 11647131 + 102029996 AGCD01033818;GBCQ01129815;XM_013516680 XP_013372134 MODEL 8914093 pseudo LOC102010833 ADP-ribosylation factor-like protein 2-binding protein pseudogene NW_004955532 3917497 3917975 - 102010833 AGCD01070305 MODEL 8921463 protein-coding Wipf1 WAS/WASL interacting protein family member 1 ENCODES a protein that exhibits cytoskeletal anchor activity (ortholog); protein folding chaperone (ortholog); SH3 domain binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament-based movement (ortholog); positive regulation of protein export from nucleus (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog) NW_004955449 760382 831007 + 102021190 AGCD01041772;AGCD01041773;AGCD01041774;GBBH01142069;GBDF01014452;XM_013518745 XP_013374199 MODEL 8699890 protein-coding Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase ENCODES a protein that exhibits RNA polymerase II CTD heptapeptide repeat phosphatase activity (ortholog); INVOLVED IN co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955486 9317078 9338414 + 102018734 AGCD01059176;GBDF01003615;XM_005404212 XP_005404269 MODEL 9040460 protein-coding Pyroxd1 pyridine nucleotide-disulphide oxidoreductase domain 1 ENCODES a protein that exhibits NAD(P)H oxidase H2O2-forming activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); ASSOCIATED WITH dilated cardiomyopathy 1O (ortholog); genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); sarcomere (ortholog) NW_004955413 17097859 17115148 + 102016905 AGCD01014129;GBDF01196381;XM_005379057 XP_005379114 MODEL 9067068 protein-coding Ppid peptidylprolyl isomerase D ENCODES a protein that exhibits cyclosporin A binding (ortholog); enzyme binding (ortholog); heat shock protein binding (ortholog); INVOLVED IN cellular response to UV-A (ortholog); chaperone-mediated protein folding (ortholog); lipid droplet organization (ortholog); PARTICIPATES IN estrogen signaling pathway; ASSOCIATED WITH brain ischemia (ortholog); megacolon (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955471 12309224 12323198 - 102018917 AGCD01053285;AGCD01053286;GBDI01137437;XM_005400965 XP_005401022 MODEL 9029011 ncrna LOC102021044 uncharacterized LOC102021044 NW_004955538 202245 253351 + 102021044 AGCD01070993;GBCB01132110;XR_001232103;XR_001232104;XR_001232105;XR_001232106;XR_001232107;XR_001232108;XR_001232109;XR_264790;XR_264791 MODEL 8759728 protein-coding Tspear thrombospondin type laminin G domain and EAR repeats INVOLVED IN hair cycle process (ortholog); Notch signaling pathway (ortholog); regulation of Notch signaling pathway (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autoimmune polyendocrine syndrome type 1 (ortholog); autosomal recessive nonsyndromic deafness 98 (ortholog); FOUND IN cell surface (ortholog); ciliary membrane (ortholog); stereocilium (ortholog) NW_004955407 41513538 41566931 - 102009147 AGCD01007870;GBDJ01386456;XM_013506099 XP_013361553 MODEL 8767783 ncrna LOC102015809 uncharacterized LOC102015809 NW_004955408 23149825 23157092 - 102015809 AGCD01008584;GBBH01141898;XR_001232380;XR_259702 MODEL 8823831 protein-coding Bcl6b BCL6B transcription repressor ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN nucleus (ortholog) NW_004955467 9900392 9906610 - 102006326 AGCD01051535;GBDJ01140936;XM_005399571;XM_013522100 XP_005399628;XP_013377554 MODEL 8817436 ncrna LOC102018823 uncharacterized LOC102018823 NW_004955472 1375543 1398861 - 102018823 AGCD01053390;GBDF01161710;XR_263542 MODEL 8882064 ncrna LOC102013262 uncharacterized LOC102013262 NW_004955462 13861908 13874784 + 102013262 AGCD01049434;GBDF01307845;XR_001236609 MODEL 9060697 protein-coding Lix1 limb and CNS expressed 1 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955418 15509586 15575059 + 102008727 AGCD01019106;AGCD01019107;GBBH01067993;XM_005382220;XM_013513047 XP_005382277;XP_013368501 MODEL 8853953 protein-coding LOC102023850 zinc finger protein 433-like NW_004955546 159991 288321 + 102023850 AGCD01071954;AGCD01071955;AGCD01071956;AGCD01071957;AGCD01071958;AGCD01071959;AGCD01071960;AGCD01071961;AGCD01071962;GBDJ01241204;XM_013508418 XP_013363872 MODEL 9064792 protein-coding LOC102019294 melanoma-associated antigen 10-like NW_004955498 2586214 2586879 - 102019294 AGCD01062811;XM_005406471 XP_005406528 MODEL 39131310 protein-coding TRAV22 T cell receptor alpha variable 22 8833132 ncrna LOC102013263 uncharacterized LOC102013263 NW_004955410 30910864 30939783 - 102013263 AGCD01011313;GBDJ01050962;XR_259888 MODEL 8800982 protein-coding Rxfp3 relaxin family peptide receptor 3 ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); INVOLVED IN phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); positive regulation of cytokinesis (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955426 19493990 19497074 + 102027551 AGCD01026547;XM_005386165 XP_005386222 MODEL 9012361 trna Trnal-uag transfer RNA leucine (anticodon UAG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955467;NW_004955550 8841723;1420231 8841804;1420312 +;+ 101978792 AGCD01051475;AGCD01072566 MODEL 9008565 protein-coding Plekha4 pleckstrin homology domain containing A4 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN positive regulation of canonical Wnt signaling pathway (ortholog); positive regulation of Wnt signaling pathway, planar cell polarity pathway (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN extrinsic component of cytoplasmic side of plasma membrane (ortholog) NW_004955559 1756695 1775558 + 102003593 AGCD01073666;GBCQ01039883;XM_005412930 XP_005412987 MODEL 8959207 protein-coding LOC102007088 uncharacterized LOC102007088 NW_004955459 3561454 3572591 - 102007088 AGCD01048015;GBDF01086912;XM_013521036 XP_013376490 MODEL 9042100 protein-coding Rad9b RAD9 checkpoint clamp component B ASSOCIATED WITH neural tube defect (ortholog); FOUND IN nucleus (ortholog) NW_004955482 7405520 7459240 + 102023472 AGCD01057466;AGCD01057467;AGCD01057468;GBDF01050748;XM_005403153;XM_005403154;XM_013503652;XM_013503653;XM_013503654;XM_013503655 XP_005403210;XP_005403211;XP_013359106;XP_013359107;XP_013359108;XP_013359109 MODEL 8833944 protein-coding Smndc1 survival motor neuron domain containing 1 ASSOCIATED WITH Cornelia de Lange syndrome 3 (ortholog) NW_004955485 1070596 1081979 + 102016920 AGCD01058470;GBCQ01149251;XM_005403757;XM_005403758 XP_005403814;XP_005403815 MODEL 153211019 protein-coding TRBV12-5 T cell receptor beta variable 12-5 8836279 protein-coding Spaca5 sperm acrosome associated 5 ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ortholog) NW_004955516 103674 106082 - 102012568 AGCD01067369;GBDF01189240;XM_005408932 XP_005408989 MODEL 10372034 ncrna LOC106149930 uncharacterized LOC106149930 NW_004955402 5747561 5749079 - 106149930 AGCD01000138;GBDF01196370;XR_001236414 MODEL 9066085 protein-coding Ssuh2 ssu-2 homolog INVOLVED IN odontogenesis (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); cardiomyopathy (ortholog); dentin dysplasia (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955561 254876 274581 - 102026579 AGCD01073819;GBDF01109495;XM_013509079 XP_013364533 MODEL 8825383 protein-coding Radil Rap associating with DIL domain INVOLVED IN substrate adhesion-dependent cell spreading (ortholog); ASSOCIATED WITH Baraitser-Winter syndrome 1 (ortholog); megacolon (ortholog); FOUND IN microtubule (ortholog); protein-containing complex (ortholog) NW_004955460 10906944 10990369 + 102005905 AGCD01048623;AGCD01048624;AGCD01048625;AGCD01048626;GBDF01126679;XM_005397849;XM_013521246 XP_005397906;XP_013376700 MODEL 8952253 protein-coding Pinlyp phospholipase A2 inhibitor and LY6/PLAUR domain containing ASSOCIATED WITH ethylmalonic encephalopathy (ortholog); schizophrenia (ortholog) NW_004955555 1316543 1322241 + 102016430 AGCD01073072;GBDF01268870;XM_005412532;XM_013508748 XP_005412589;XP_013364202 MODEL 8777927 pseudo LOC102023496 mortality factor 4-like protein 2 NW_004955424 12730315 12770211 - 102023496 AGCD01024618;AGCD01024619 MODEL 10085676 protein-coding LOC106146825 laminin subunit gamma-1-like NW_004955497 118560 126008 + 106146825 AGCD01062401;XM_013505448 XP_013360902 MODEL 8852868 protein-coding Tspo translocator protein ENCODES a protein that exhibits androgen binding (ortholog); benzodiazepine receptor activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN adrenal gland development (ortholog); behavioral response to pain (ortholog); cellular hypotonic response (ortholog); PARTICIPATES IN heme biosynthetic pathway; ASSOCIATED WITH cholesterol ester storage disease (ortholog); COVID-19 (ortholog); Developmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); mitochondrial outer membrane (ortholog) NW_004955413 28309105 28315075 + 102016254 AGCD01014556;GBDK01018713;XM_005379436;XM_005379437;XM_005379438 XP_005379493;XP_005379494;XP_005379495 MODEL 8742739 ncrna LOC102003823 uncharacterized LOC102003823 NW_004955403 768478 771303 + 102003823 AGCD01001708;GBDI01035702;XR_259130 MODEL 8755411 protein-coding Ptger3 prostaglandin E receptor 3 ENCODES a protein that exhibits prostaglandin E receptor activity (ortholog); INVOLVED IN adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); bicarbonate transport (ortholog); cAMP biosynthetic process (ortholog); ASSOCIATED WITH asthma (ortholog); Brain Injuries (ortholog); cicatricial pemphigoid (ortholog); FOUND IN brush border membrane (ortholog); cell surface (ortholog); neuronal cell body (ortholog) NW_004955423 21096926 21164435 + 102004944 AGCD01023935;GBDF01208544;XM_005385244 XP_005385301 MODEL 8949224 protein-coding Pcdh20 protocadherin 20 ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog) NW_004955404 43615300 43623119 + 102003406 AGCD01004390;GBDF01032942;XM_005374200;XR_259336;XR_259337 XP_005374257 MODEL 8881600 protein-coding Slc7a11 solute carrier family 7 member 11 ENCODES a protein that exhibits cystine:glutamate antiporter activity (ortholog); L-kynurenine transmembrane transporter activity (ortholog); INVOLVED IN adult behavior (ortholog); brain development (ortholog); cellular response to oxidative stress (ortholog); ASSOCIATED WITH contact dermatitis (ortholog); Hermansky-Pudlak syndrome (ortholog); Neoplasm Metastasis (ortholog); FOUND IN apical part of cell (ortholog); astrocyte projection (ortholog); brush border membrane (ortholog) NW_004955428 5238460 5309085 + 102024825 AGCD01027705;AGCD01027706;GBDK01303653;XM_005386709;XM_013515245 XP_005386766;XP_013370699 MODEL 8864704 pseudo LOC102006714 prostaglandin E synthase 3 pseudogene NW_004955441 1043090 1044707 - 102006714 AGCD01036746 MODEL 8976850 ncrna LOC102008991 uncharacterized LOC102008991 NW_004955551 215613 228844 - 102008991 AGCD01072651;GBDF01122997;XR_001232270;XR_001232271;XR_001232272;XR_001232273 MODEL 8724016 ncrna LOC102012057 uncharacterized LOC102012057 NW_004955406 39330833 39331560 + 102012057 AGCD01006626;GBDK01343682;XR_259526 MODEL 8999710 ncrna LOC102019297 uncharacterized LOC102019297 NW_004955427 11260026 11277529 - 102019297 AGCD01027179;AGCD01027180;AGCD01027181;GBBH01138238;XR_001234355;XR_261252 MODEL 8790384 protein-coding LOC102005661 hematopoietic prostaglandin D synthase-like NW_004955405 437618 453991 + 102005661 AGCD01004560;GBDK01126143;XM_005374245;XR_001235167;XR_001235168;XR_259351 XP_005374302 MODEL 8799360 protein-coding Rbm10 RNA binding motif protein 10 ENCODES a protein that exhibits identical protein binding (ortholog); miRNA binding (ortholog); single-stranded RNA binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); cardiac muscle cell myoblast differentiation (ortholog); mRNA stabilization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Cardiomegaly (ortholog); colorectal cancer (ortholog); FOUND IN nuclear speck (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955516 904852 934313 - 102022844 AGCD01067404;AGCD01067405;AGCD01067406;GBCE01095320;XM_005408964;XM_005408966;XM_013506926;XM_013506927 XP_005409021;XP_005409023;XP_013362380;XP_013362381 MODEL 8915463 pseudo LOC102011206 isochorismatase domain-containing protein 1 pseudogene NW_004955485 129742 131023 + 102011206 AGCD01058442;XM_005403914 MODEL 9003980 protein-coding Epb41l4a erythrocyte membrane protein band 4.1 like 4A ASSOCIATED WITH Failure to Thrive (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955418 2876345 3097365 + 102013606 AGCD01018777;AGCD01018778;AGCD01018779;GBCQ01099747;GBDF01195481;XM_005382155;XM_005382156;XM_005382157;XM_013513019 XP_005382212;XP_005382213;XP_005382214;XP_013368473 MODEL 9006013 trna Trnam-cau transfer RNA methionine (anticodon CAU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978797 AGCD01050592;AGCD01050595;AGCD01050596;AGCD01050607;AGCD01050636;AGCD01057602;AGCD01057629;AGCD01057630;AGCD01071784 MODEL 8728363 protein-coding Pyroxd2 pyridine nucleotide-disulphide oxidoreductase domain 2 INVOLVED IN mitochondrion organization (ortholog); ASSOCIATED WITH Leigh disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955507 4384626 4407603 - 102012985 AGCD01065648;GBDK01322816;XM_005407661;XM_005407662;XM_005407663 XP_005407718;XP_005407719;XP_005407720 MODEL 8852860 ncrna LOC102015810 uncharacterized LOC102015810 NW_004955458 7861529 7899431 + 102015810 AGCD01047592;AGCD01047593;AGCD01047594;GBDF01249843;XR_001236442;XR_262987 MODEL 8986245 protein-coding Ndufb10 NADH:ubiquinone oxidoreductase subunit B10 ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955442 15306688 15309281 - 102013454 AGCD01037865;GBDK01080205;XM_005391494 XP_005391551 MODEL 8828720 protein-coding Rbm11 RNA binding motif protein 11 ENCODES a protein that exhibits poly(U) RNA binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 16071186 16082332 + 102006210 AGCD01007205;GBDF01252713;XM_005375561 XP_005375618 MODEL 39133512 snrna U4 U4 spliceosomal RNA 10146797 ncrna LOC106149931 uncharacterized LOC106149931 NW_004955457 7882946 7885290 + 106149931 AGCD01046891;XR_001236413 MODEL 8752080 protein-coding Ssx2ip SSX family member 2 interacting protein ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN centrosome cycle (ortholog); cilium assembly (ortholog); intraciliary transport involved in cilium assembly (ortholog); FOUND IN adherens junction (ortholog); cell leading edge (ortholog); centriolar satellite (ortholog) NW_004955423 9249528 9296293 + 102028768 AGCD01023657;GBDF01001292;XM_005385153;XM_005385155;XR_260961 XP_005385210;XP_005385212 MODEL 8886319 protein-coding Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ENCODES a protein that exhibits dynein complex binding (ortholog); dynein intermediate chain binding (ortholog); identical protein binding (ortholog); INVOLVED IN acrosome assembly (ortholog); actin cytoskeleton organization (ortholog); adult locomotory behavior (ortholog); PARTICIPATES IN altered Reelin signaling pathway; Reelin signaling pathway; ASSOCIATED WITH Abnormal Cortical Gyration (ortholog); Carcinogenesis (ortholog); chromosome 15q11.2 deletion syndrome (ortholog); FOUND IN 1-alkyl-2-acetylglycerophosphocholine esterase complex (ortholog); astral microtubule (ortholog); axon (ortholog) NW_004955481 608897 686454 - 102006576 AGCD01056798;AGCD01056799;GBDF01010392;XM_005402577;XM_013503487;XM_013503488;XM_013503489;XM_013503490;XM_013503491;XM_013503492 XP_005402634;XP_013358941;XP_013358942;XP_013358943;XP_013358944;XP_013358945;XP_013358946 MODEL 8866999 protein-coding Rae1 ribonucleic acid export 1 ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN regulation of mitotic spindle organization (ortholog); FOUND IN fibrillar center (ortholog); mitotic spindle pole (ortholog); nuclear envelope (ortholog) NW_004955445 2069791 2084210 - 102005190 AGCD01039350;GBCE01074921;XM_005392255 XP_005392312 MODEL 8983008 pseudo LOC102013264 sorting nexin-1 pseudogene NW_004955410 705354 707003 + 102013264 AGCD01010596 MODEL 9012143 protein-coding Ptger4 prostaglandin E receptor 4 ENCODES a protein that exhibits prostaglandin E receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); Alzheimer's disease (ortholog); ankylosing spondylitis (ortholog); FOUND IN neuron projection terminus (ortholog); neuronal cell body (ortholog); nuclear membrane (ortholog) NW_004955426 24997811 25010822 + 102024139 AGCD01026701;GBDF01055599;XM_005386240 XP_005386297 MODEL 8764986 protein-coding Wipf2 WAS/WASL interacting protein family member 2 ASSOCIATED WITH hypertrophic cardiomyopathy 25 (ortholog) NW_004955451 14821924 14856304 + 102011269 AGCD01043575;AGCD01043576;AGCD01043577;AGCD01043578;GBDI01020357;XM_005394352 XP_005394409 MODEL 8849398 protein-coding Rlim ring finger protein, LIM domain interacting ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN negative regulation of DNA-binding transcription factor activity (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Developmental Disabilities (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955562 508723 531699 - 102024290 AGCD01073927;GBCQ01128280;XM_005413083;XM_005413084;XM_013509117;XM_013509118;XM_013509119 XP_005413140;XP_005413141;XP_013364571;XP_013364572;XP_013364573 MODEL 8808532 protein-coding Pds5a PDS5 cohesin associated factor A INVOLVED IN anterior/posterior pattern specification (ortholog); heart morphogenesis (ortholog); lens development in camera-type eye (ortholog); ASSOCIATED WITH Cornelia de Lange syndrome (ortholog); Hyperglycinemia, Lactic Acidosis, and Seizures (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955443 7475434 7603548 + 102022550 AGCD01038285;AGCD01038286;GBDF01192301;GBDF01192302;XM_005391971 XP_005392028 MODEL 8748413 ncrna LOC102021045 uncharacterized LOC102021045 NW_004955542 1395369 1398553 - 102021045 AGCD01071503;GBDF01251072;XR_264852 MODEL 8889839 ncrna LOC102013265 uncharacterized LOC102013265 NW_004955411 20689282 20717825 - 102013265 AGCD01012060;AGCD01012061;GBDF01278033;XR_001232800;XR_001232801;XR_001232802;XR_259939 MODEL 8767039 protein-coding Spaca7 sperm acrosome associated 7 INVOLVED IN cell adhesion (ortholog); negative regulation of cell adhesion (ortholog); single fertilization (ortholog); ASSOCIATED WITH factor X deficiency (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955404 1050098 1077184 - 102014315 AGCD01003217;AGCD01003218;GBDF01009174;XM_013515703;XM_013515707 XP_013371157;XP_013371161 MODEL 8786703 protein-coding Smo smoothened, frizzled class receptor ENCODES a protein that exhibits cAMP-dependent protein kinase inhibitor activity (ortholog); oxysterol binding (ortholog); patched binding (ortholog); INVOLVED IN alpha-tubulin acetylation (ortholog); anterior/posterior pattern specification (ortholog); apoptotic process (ortholog); PARTICIPATES IN altered Hedgehog signaling pathway; Hedgehog signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Adenomatous Polyps (ortholog); ameloblastoma (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); axonal growth cone (ortholog); caveola (ortholog) NW_004955479 9963377 9991670 + 102024563 AGCD01056511;AGCD01056512;AGCD01056513;GBBH01143091;GBDF01304674;XM_013503270 XP_013358724 MODEL 8881021 protein-coding LOC102008175 translation initiation factor IF-2-like NW_004955451 5786082 5786923 - 102008175 AGCD01043175;GBCQ01165193;GBDJ01098516;XM_013519403 XP_013374857 MODEL 8721033 ncrna LOC102009735 uncharacterized LOC102009735 NW_004955500 4775193 4791358 - 102009735 AGCD01063811;GBDF01219713;XR_001231484;XR_001231485;XR_001231486 MODEL 8927590 protein-coding Sox14 SRY-box transcription factor 14 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN entrainment of circadian clock (ortholog); regulation of neuron migration (ortholog); visual perception (ortholog); ASSOCIATED WITH syndromic microphthalmia 5 (ortholog); FOUND IN transcription regulator complex (ortholog) NW_004955501 1155920 1157870 - 102016077 AGCD01064045;XM_005406773 XP_005406830 MODEL 9054996 protein-coding Rln3 relaxin 3 ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); ASSOCIATED WITH Hyperplasia (ortholog); Myocardial Ischemia (ortholog) NW_004955415 32747362 32749338 + 102010155 AGCD01016732;GBBH01048357;XM_005381083 XP_005381140 MODEL 15036852 trna Trnan-auu transfer RNA asparagine (anticodon AUU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978824 8761762 protein-coding Pola1 DNA polymerase alpha 1, catalytic subunit ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN DNA biosynthetic process (ortholog); DNA repair (ortholog); DNA replication (ortholog); ASSOCIATED WITH aplastic anemia (ortholog); autistic disorder (ortholog); developmental and epileptic encephalopathy 1 (ortholog); FOUND IN alpha DNA polymerase:primase complex (ortholog); chromatin (ortholog); cytosol (ortholog) NW_004955509 5007385 5319683 + 102020470 AGCD01066094;AGCD01066095;AGCD01066096;AGCD01066097;AGCD01066098;AGCD01066099;AGCD01066100;GBBH01097790;XM_005407854;XM_013506296 XP_005407911;XP_013361750 MODEL 8844557 protein-coding Epb41l4b erythrocyte membrane protein band 4.1 like 4B INVOLVED IN actomyosin structure organization (ortholog); positive regulation of cell adhesion (ortholog); positive regulation of gene expression (ortholog); FOUND IN apical part of cell (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955419 17686096 17821884 + 102003658 AGCD01020161;AGCD01020162;AGCD01020163;AGCD01020164;GBCE01117906;GBCE01117907;XM_013513219;XM_013513220 XP_013368673;XP_013368674 MODEL 8927466 pseudo LOC102015066 tRNA pseudouridine(38/39) synthase pseudogene NW_004955402 1109388 1111146 - 102015066 AGCD01000048 MODEL 8709213 ncrna LOC102008177 uncharacterized LOC102008177 NW_004955404 49258791 49264921 - 102008177 AGCD01004518;GBCQ01074933;XR_259344 MODEL 9042421 ncrna LOC102009736 uncharacterized LOC102009736 NW_004955425 27635177 27653923 + 102009736 AGCD01025978;GBDJ01039065;XR_001234273;XR_261177 MODEL 8783810 protein-coding Ndufb11 NADH:ubiquinone oxidoreductase subunit B11 ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); genetic disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955516 934740 937207 + 102022320 AGCD01067406;GBDJ01023277;XM_005408963 XP_005409020 MODEL 8970404 protein-coding Syt7 synaptotagmin 7 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); calmodulin binding (ortholog); INVOLVED IN calcium ion regulated lysosome exocytosis (ortholog); calcium ion-regulated exocytosis of neurotransmitter (ortholog); calcium-dependent activation of synaptic vesicle fusion (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; insulin secretion pathway; ASSOCIATED WITH Hereditary Paraganglioma-Pheochromocytoma Syndromes (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN axon terminus (ortholog); dendrite (ortholog); dense core granule (ortholog) NW_004955511 6051392 6093651 + 102020828 AGCD01066596;GBDF01235443;XM_013506496;XM_013506497;XM_013506498;XM_013506499;XM_013506500;XM_013506501;XM_013506502;XM_013506503 XP_013361950;XP_013361951;XP_013361952;XP_013361953;XP_013361954;XP_013361955;XP_013361956;XP_013361957 MODEL 8978226 trna Trnan-guu transfer RNA asparagine (anticodon GUU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978825 AGCD01028556;AGCD01030347;AGCD01043507;AGCD01049456;AGCD01052199;AGCD01062085;AGCD01080156 MODEL 8743649 protein-coding Pcdh7 protocadherin 7 INVOLVED IN regulation of postsynapse assembly (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog); postsynaptic density (ortholog) NW_004955443 14765994 15160377 - 102014090 AGCD01038522;AGCD01038523;AGCD01038524;AGCD01038525;AGCD01038526;AGCD01038527;AGCD01038528;AGCD01038529;GBDJ01080930;XM_005392020;XM_005392021;XM_005392022;XM_005392023;XM_005392024;XM_005392025;XM_013518075;XM_013518076;XM_013518077;XM_013518078;XM_013518079 XP_005392077;XP_005392078;XP_005392079;XP_005392080;XP_005392081;XP_005392082;XP_013373529;XP_013373530;XP_013373531;XP_013373532;XP_013373533 MODEL 8858932 protein-coding Sf3b6 splicing factor 3b subunit 6 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN blastocyst formation (ortholog); mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN nucleoplasm (ortholog); nucleus (ortholog); U12-type spliceosomal complex (ortholog) NW_004955469 6275894 6286908 - 102024444 AGCD01052376;AGCD01052377;GBCE01001807;XM_005400375 XP_005400432 MODEL 8700689 protein-coding Slc33a1 solute carrier family 33 member 1 ENCODES a protein that exhibits acetyl-CoA transmembrane transporter activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN acetyl-CoA transmembrane transport (ortholog); ASSOCIATED WITH cataract (ortholog); Congenital Cataracts, Hearing Loss, and Neurodegeneration (ortholog); Developmental Disabilities (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955448 6885153 6905641 - 102016652 AGCD01041396;GBDI01172474;XM_005393070;XM_005393071 XP_005393127;XP_005393128 MODEL 8886301 ncrna LOC102005663 uncharacterized LOC102005663 NW_004955405 42749975 42752628 - 102005663 AGCD01005586;GBDF01179322;XR_259461 MODEL 39131441 protein-coding TRDC T cell receptor delta constant 8734707 protein-coding Ptges prostaglandin E synthase ENCODES a protein that exhibits glutathione binding (ortholog); glutathione peroxidase activity (ortholog); glutathione transferase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to resveratrol (ortholog); chronic inflammatory response (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Barrett's esophagus (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); nuclear envelope lumen (ortholog) NW_004955445 10053745 10056981 + 102028350 AGCD01039640;XM_005392576 XP_005392633 MODEL 8747188 protein-coding LOC102021049 beta-microseminoprotein-like NW_004955546 2858387 2870863 - 102021049 AGCD01072102;AGCD01072103;GBBH01135368;XM_005411812;XM_005411813 XP_005411869;XP_005411870 MODEL 10382536 protein-coding LOC106146826 uncharacterized LOC106146826 NW_004955497 1026944 1030867 - 106146826 AGCD01062446;GBDF01227044;GBDF01249337;XM_013505449 XP_013360903 MODEL 9030930 protein-coding Syt8 synaptotagmin 8 ENCODES a protein that exhibits calcium-dependent phospholipid binding (ortholog); calcium-dependent protein binding (ortholog); clathrin binding (ortholog); INVOLVED IN acrosome reaction (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN cytoplasm (ortholog); vesicle (ortholog) NW_004955422 13642933 13648351 + 102028979 AGCD01022837;GBDK01220202;XM_013514332;XM_013514333;XM_013514334 XP_013369786;XP_013369787;XP_013369788 MODEL 9043865 ncrna LOC102013267 uncharacterized LOC102013267 NW_004955464 13689362 13696059 + 102013267 AGCD01050291;GBCQ01087996;XR_001236689;XR_263217 MODEL 8866963 protein-coding Tlr6 toll like receptor 6 ENCODES a protein that exhibits diacyl lipopeptide binding (ortholog); identical protein binding (ortholog); lipopeptide binding (ortholog); INVOLVED IN cellular response to amyloid-beta (ortholog); cellular response to diacyl bacterial lipopeptide (ortholog); cellular response to oxidised low-density lipoprotein particle stimulus (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH alcohol use disorder (ortholog); aspergillosis (ortholog); asthma (ortholog); FOUND IN Golgi apparatus (ortholog); membrane raft (ortholog); receptor complex (ortholog) NW_004955443 8401461 8427175 + 102003592 AGCD01038323;AGCD01038324;AGCD01038325;AGCD01038326;GBDF01165081;XM_005391993;XM_005391995;XM_013518056;XM_013518057;XM_013518058;XM_013518059 XP_005392050;XP_005392052;XP_013373510;XP_013373511;XP_013373512;XP_013373513 MODEL 8907387 protein-coding Pinx1 PIN2 (TERF1) interacting telomerase inhibitor 1 ENCODES a protein that exhibits protein-containing complex binding (ortholog); telomerase inhibitor activity (ortholog); telomerase RNA binding (ortholog); INVOLVED IN mitotic metaphase chromosome alignment (ortholog); negative regulation of G2/M transition of mitotic cell cycle (ortholog); negative regulation of protein ubiquitination (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN chromosome, telomeric region (ortholog); kinetochore (ortholog); mitochondrion (ortholog) NW_004955403 52284378 52361924 - 102024413 AGCD01003003;GBCB01056282;XM_005373807;XM_005373809 XP_005373864;XP_005373866 MODEL 8951159 protein-coding Slc7a13 solute carrier family 7 member 13 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); L-cystine transport (ortholog); L-glutamate transmembrane transport (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955417 3882910 3897753 - 102005591 AGCD01017931;GBCB01068798;XM_005381746;XM_005381747 XP_005381803;XP_005381804 MODEL 10338856 protein-coding LOC106146827 uncharacterized LOC106146827 NW_004955497 5778937 5780866 + 106146827 AGCD01062614;GBDF01094347;GBDF01120964;XM_013505452 XP_013360906 MODEL 8968888 protein-coding Rxfp4 relaxin family peptide/INSL5 receptor 4 INVOLVED IN positive regulation of feeding behavior (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog) NW_004955545 2143832 2145939 + 102013548 AGCD01071886;XM_005411627 XP_005411684 MODEL 9009435 protein-coding LOC102007094 uncharacterized LOC102007094 NW_004955411 33570 60551 + 102007094 AGCD01011450;XM_013510711 XP_013366165 MODEL 9063119 protein-coding LOC102015067 myosin regulatory light polypeptide 9 NW_004955402 7255139 7264599 - 102015067 AGCD01000170;GBDI01010726;XM_005372653;XM_005372654 XP_005372710;XP_005372711 MODEL 9019866 pseudo LOC102009737 nucleophosmin pseudogene NW_004955503 3206385 3225585 - 102009737 AGCD01064619 MODEL 8890797 protein-coding LOC102018824 NACHT, LRR and PYD domains-containing protein 10 NW_004955414 23795260 23797298 - 102018824 AGCD01015525;GBDF01034039;XM_013512059 XP_013367513 MODEL 8900586 trna Trnap-agg transfer RNA proline (anticodon AGG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978806 AGCD01015187;AGCD01037806;AGCD01049336;AGCD01056483;AGCD01057606;AGCD01072566 MODEL 9008981 protein-coding Lix1l limb and CNS expressed 1 like INVOLVED IN actin cytoskeleton organization (ortholog); gene expression (ortholog); mitral valve development (ortholog); ASSOCIATED WITH cataract 46 juvenile-onset (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955568 136482 158531 + 102020853 AGCD01074503;AGCD01074504;GBBH01166392;GBDI01181571;XM_013509354 XP_013364808 MODEL 8937817 pseudo LOC102023856 speckle-type POZ protein pseudogene NW_004955560 87944 89059 + 102023856 AGCD01073707;AGCD01073708;XM_005412990 MODEL 9054560 protein-coding Slc34a1 solute carrier family 34 member 1 ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN arsenate ion transmembrane transport (ortholog); bone remodeling (ortholog); calcium ion homeostasis (ortholog); PARTICIPATES IN phosphate transport pathway; ASSOCIATED WITH Acidoses (ortholog); acute kidney failure (ortholog); anti-basement membrane glomerulonephritis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog) NW_004955408 29626775 29640811 + 102024651 AGCD01008765;GBCQ01005308;XM_005376430;XM_005376431;XM_005376432;XM_005376433 XP_005376487;XP_005376488;XP_005376489;XP_005376490 MODEL 8755658 ncrna LOC102015069 uncharacterized LOC102015069 NW_004955450 6656256 6664956 - 102015069 AGCD01042523;GBBH01039153;XR_001235837;XR_262534;XR_262535;XR_262537 MODEL 8839807 protein-coding Pds5b PDS5 cohesin associated factor B ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN lens development in camera-type eye (ortholog); mitotic sister chromatid cohesion (ortholog); negative regulation of cell population proliferation (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955431 13083229 13268680 - 102009532 AGCD01030281;AGCD01030282;AGCD01030283;AGCD01030284;AGCD01030285;AGCD01030286;AGCD01030287;AGCD01030288;AGCD01030289;AGCD01030290;AGCD01030291;AGCD01030292;AGCD01030293;GBCQ01010023;XM_005387707;XM_005387708;XM_005387709;XM_005387710;XM_013515891 XP_005387764;XP_005387765;XP_005387766;XP_005387767;XP_013371345 MODEL 8819354 protein-coding Tspo2 translocator protein 2 ENCODES a protein that exhibits 5-aminolevulinic acid transmembrane transporter activity (ortholog); cholesterol binding (ortholog); INVOLVED IN 5-aminolevulinic acid import across plasma membrane (ortholog); enucleate erythrocyte differentiation (ortholog); import across plasma membrane (ortholog); FOUND IN endoplasmic reticulum (ortholog); organelle membrane (ortholog); plasma membrane (ortholog) NW_004955437 7714107 7715796 + 102005506 AGCD01034465;GBBH01126606;XM_005389665;XM_005389666 XP_005389722;XP_005389723 MODEL 8703608 protein-coding Sox15 SRY-box transcription factor 15 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN cell differentiation (ortholog); myoblast development (ortholog); negative regulation of striated muscle tissue development (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); common variable immunodeficiency (ortholog); congenital disorder of glycosylation If (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955467 9333620 9335498 + 102008611 AGCD01051497;GBDI01384127;XM_005399474;XM_005399475 XP_005399531;XP_005399532 MODEL 9004087 pseudo LOC102019299 ferritin heavy chain pseudogene NW_004955506 5978894 5981769 + 102019299 AGCD01065396 MODEL 8895433 protein-coding LOC102010836 protein S100-A6-like NW_004955545 93760 170651 - 102010836 AGCD01071765;AGCD01071766;AGCD01071767;AGCD01071768;AGCD01071769;AGCD01071770;AGCD01071771;AGCD01071772;AGCD01071773;AGCD01071774;GBDJ01329857;XM_005411405;XR_001232180 XP_005411462 MODEL 8745584 ncrna LOC102015070 uncharacterized LOC102015070 NW_004955404 29399194 29405605 - 102015070 AGCD01003975;GBCQ01066578;XR_259326 MODEL 8887105 protein-coding LOC102012060 cytochrome c oxidase subunit 6A1, mitochondrial ASSOCIATED WITH Charcot-Marie-Tooth disease recessive intermediate D (ortholog); neuropathy (ortholog); peripheral nervous system disease (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955455 11201031 11203644 - 102012060 AGCD01045986;GBCQ01009037;XM_005396510 XP_005396567 MODEL 8709291 protein-coding Pola2 DNA polymerase alpha 2, accessory subunit ENCODES a protein that exhibits DNA-directed DNA polymerase activity (ortholog); INVOLVED IN DNA replication (ortholog); DNA replication initiation (ortholog); DNA replication, synthesis of primer (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog); FOUND IN alpha DNA polymerase:primase complex (ortholog); ciliary basal body (ortholog); cytosol (ortholog) NW_004955422 19939971 19963753 - 102012445 AGCD01023049;AGCD01023050;GBDF01279643;XM_005384504;XM_005384505;XM_005384506 XP_005384561;XP_005384562;XP_005384563 MODEL 8950182 protein-coding Epb41l5 erythrocyte membrane protein band 4.1 like 5 ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actomyosin structure organization (ortholog); apical constriction (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell leading edge (ortholog); cytosol (ortholog); focal adhesion (ortholog) NW_004955459 9641926 9783718 - 102017547 AGCD01048164;AGCD01048165;AGCD01048166;AGCD01048167;AGCD01048168;AGCD01048169;AGCD01048170;AGCD01048171;GBCE01115046;XM_005397654;XM_005397658;XM_005397659 XP_005397711;XP_005397715;XP_005397716 MODEL 8738183 protein-coding Ndufb2 NADH:ubiquinone oxidoreductase subunit B2 ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); RASopathy (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955494 2723740 2731054 - 102020259 AGCD01061448;GBDF01049094;XM_005405420;XM_005405421 XP_005405477;XP_005405478 MODEL 8739478 protein-coding Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); 1-phosphatidylinositol-5-phosphate 4-kinase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process (ortholog); autophagosome-lysosome fusion (ortholog); megakaryocyte development (ortholog); PARTICIPATES IN phosphoinositide metabolic pathway; ASSOCIATED WITH melanoma (ortholog); FOUND IN autophagosome (ortholog); cytosol (ortholog); lysosome (ortholog) NW_004955429 6231135 6399672 + 102012012 AGCD01028545;AGCD01028546;AGCD01028547;GBDF01014622;XM_005387233 XP_005387290 MODEL 8824113 pseudo LOC102011208 40S ribosomal protein S12 pseudogene NW_004955489 506441 506882 - 102011208 AGCD01059807 MODEL 8824114 protein-coding LOC102012063 NEDD4-binding protein 2-like 2 NW_004955407 28220425 28222169 + 102012063 AGCD01007577;XM_013505975 XP_013361429 MODEL 8788094 ncrna LOC102023499 uncharacterized LOC102023499 NW_004955426 18323676 18326033 + 102023499 AGCD01026520;GBDF01177224;XR_261201 MODEL 9003855 ncrna LOC102009738 uncharacterized LOC102009738 NW_004955504 990784 1006063 + 102009738 AGCD01064834;GBDI01386594;XR_001231555;XR_001231556;XR_001231557;XR_001231558;XR_001231559;XR_001231560;XR_001231561;XR_001231562;XR_001231563;XR_001231564;XR_001231565;XR_001231566;XR_001231567;XR_001231568;XR_264274;XR_264276 MODEL 9066864 protein-coding LOC102003827 beta-defensin 130-like NW_004955403 53263393 53266892 - 102003827 AGCD01003047;GBDF01142643;XM_005373831 XP_005373888 MODEL 8842262 protein-coding Pyurf PIGY upstream open reading frame INVOLVED IN protein stabilization (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); hyperphosphatasia with impaired intellectual development syndrome 6 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); mitochondrion (ortholog) NW_004955474 11944579 11945906 + 102008310 AGCD01054643;GBCE01000203;XM_013523090 XP_013378544 MODEL 39133513 snrna U4 U4 spliceosomal RNA 8813644 protein-coding LOC102017684 complement C1q-like protein 4 NW_004955500 8138111 8141865 - 102017684 AGCD01063981;GBDI01140203;XM_005415350 XP_005415407 MODEL 8872871 protein-coding LOC102012064 olfactory receptor 10C1-like NW_004955458 2337356 2338318 - 102012064 AGCD01047225;XM_005397239 XP_005397296 MODEL 8866196 trna Trnap-cgg transfer RNA proline (anticodon CGG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955467;NW_004955442;NW_004955465;NW_004955462 8707836;14202081;13093914;9311560 8707907;14202152;13093985;9311631 +;+;+;- 101978809 AGCD01037806;AGCD01049336;AGCD01050584;AGCD01051466 MODEL 9008735 protein-coding Pgm2 phosphoglucomutase 2 ENCODES a protein that exhibits phosphoglucomutase activity (ortholog); phosphopentomutase activity (ortholog); INVOLVED IN glucose metabolic process (ortholog); glycogen biosynthetic process (ortholog); glycogen catabolic process (ortholog); PARTICIPATES IN glycogen biosynthetic pathway; glycogen degradation pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytosol (ortholog) NW_004955443 9302011 9329631 - 102009429 AGCD01038347;AGCD01038348;GBCB01058679;GBDI01133806;XM_013518108;XM_013518109 XP_013373562;XP_013373563 MODEL 8893553 ncrna LOC102006718 uncharacterized LOC102006718 NW_004955443 8651958 8680827 - 102006718 AGCD01038333;GBDF01053223;XR_001235434;XR_001235435;XR_001235436;XR_001235437;XR_001235438;XR_001235439;XR_262189;XR_262190 MODEL 9054803 protein-coding Rfc1 replication factor C subunit 1 ENCODES a protein that exhibits DNA clamp unloader activity (ortholog); DNA-binding transcription factor binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN DNA-templated DNA replication (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN FasL mediated signaling pathway; mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH Bilateral Vestibulopathy (ortholog); cerebellar ataxia (ortholog); Cerebellar Ataxia, Neuropathy, and Vestibular Areflexia Syndrome (ortholog); FOUND IN DNA replication factor C complex (ortholog); Elg1 RFC-like complex (ortholog); nucleoplasm (ortholog) NW_004955443 7969117 8051734 + 102004016 AGCD01038305;AGCD01038306;AGCD01038307;AGCD01038308;GBBH01228492;GBDF01085359;XM_013518069;XM_013518070 XP_013373523;XP_013373524 MODEL 9062298 protein-coding Smoc1 SPARC related modular calcium binding 1 ENCODES a protein that exhibits extracellular matrix binding (ortholog); INVOLVED IN extracellular matrix organization (ortholog); eye development (ortholog); limb development (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); microphthalmia with limb anomalies (ortholog); FOUND IN basement membrane (ortholog) NW_004955466 378277 528260 - 102013810 AGCD01050660;AGCD01050661;AGCD01050662;GBDI01264757;GBDJ01174419;XM_005399241;XM_013521998;XM_013521999 XP_005399298;XP_013377452;XP_013377453 MODEL 8756274 ncrna LOC102013274 uncharacterized LOC102013274 NW_004955413 15656502 15680187 + 102013274 AGCD01014081;AGCD01014082;AGCD01014083;AGCD01014084;GBDI01191119;XR_001232941;XR_260081 MODEL 8893761 pseudo LOC102009739 ubiquitin-conjugating enzyme E2 E3 pseudogene NW_004955427 22033843 22034577 - 102009739 AGCD01027464 MODEL 8772615 pseudo LOC102012067 high mobility group protein B1 pseudogene NW_004955409 17116938 17117921 - 102012067 AGCD01009766;XR_259785 MODEL 8972223 protein-coding Raet1e retinoic acid early transcript 1E ENCODES a protein that exhibits natural killer cell lectin-like receptor binding (ortholog); INVOLVED IN natural killer cell mediated cytotoxicity (ortholog); positive regulation of natural killer cell mediated cytotoxicity (ortholog); T cell mediated cytotoxicity (ortholog) NW_004955439 11413978 11420902 + 102007593 AGCD01035906;GBDF01014346;XM_013517302 XP_013372756 MODEL 10167140 protein-coding LOC106146828 keratin-associated protein 10-2-like NW_004955407 41566895 41599145 + 106146828 AGCD01007870;AGCD01007871;XM_013505456 XP_013360910 MODEL 8877461 protein-coding Slc7a14 solute carrier family 7 member 14 ENCODES a protein that exhibits gamma-aminobutyric acid transmembrane transporter activity (ortholog); INVOLVED IN gamma-aminobutyric acid import (ortholog); ASSOCIATED WITH blindness (ortholog); Fanconi-Bickel syndrome (ortholog); fundus dystrophy (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); lysosomal membrane (ortholog) NW_004955420 624929 732108 - 102021769 AGCD01020550;AGCD01020551;GBCE01181118;XM_005382983 XP_005383040 MODEL 8924851 protein-coding LOC102007097 olfactory receptor 8B3-like NW_004955412 25257775 25259655 - 102007097 AGCD01013143;XM_005378418 XP_005378475 MODEL 9045916 protein-coding Bcl7a BAF chromatin remodeling complex subunit BCL7A INVOLVED IN motor behavior (ortholog); neuron projection arborization (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN SWI/SNF complex (ortholog) NW_004955482 6473535 6491398 - 102009180 AGCD01057398;GBBH01077232;GBDJ01230097;XM_005403103 XP_005403160 MODEL 8846362 protein-coding Pcdh8 protocadherin 8 INVOLVED IN chemical synaptic transmission (ortholog); modulation of chemical synaptic transmission (ortholog); morphogenesis of embryonic epithelium (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); Prostatic Neoplasms (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic membrane (ortholog); Schaffer collateral - CA1 synapse (ortholog) NW_004955404 50403752 50413264 - 102008687 AGCD01004530;AGCD01004531;GBDK01404906;XM_013516722;XR_001235026;XR_001235027;XR_001235028;XR_001235029;XR_001235030 XP_013372176 MODEL 8799856 pseudo LOC102008582 adiponectin receptor protein 1 pseudogene NW_004955446 6108606 6109553 - 102008582 AGCD01040087 MODEL 8849354 protein-coding Sik3 SIK family kinase 3 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cartilage development involved in endochondral bone morphogenesis (ortholog); endochondral ossification (ortholog); limb morphogenesis (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN cytoplasm (ortholog) NW_004955412 18177175 18280687 - 102023676 AGCD01012927;AGCD01012928;AGCD01012929;GBDK01233303;XM_005378194;XM_013511104;XM_013511105;XM_013511106;XM_013511107;XM_013511108 XP_005378251;XP_013366558;XP_013366559;XP_013366560;XP_013366561;XP_013366562 MODEL 8712506 ncrna LOC102007099 uncharacterized LOC102007099 NW_004955413 26714 54739 + 102007099 AGCD01013432;AGCD01013433;AGCD01013434;AGCD01013435;GBDF01192955;XR_001232930;XR_260037 MODEL 9021666 protein-coding Trdmt1 tRNA aspartic acid methyltransferase 1 ENCODES a protein that exhibits tRNA (cytidine-5-)-methyltransferase activity (ortholog); tRNA methyltransferase activity (ortholog); INVOLVED IN response to amphetamine (ortholog); tRNA methylation (ortholog); tRNA modification (ortholog); ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); Imerslund-Grasbeck Syndrome (ortholog); FOUND IN cytoplasm (ortholog) NW_004955429 10741512 10774268 + 102028115 AGCD01028679;GBCE01009529;XM_005386963;XM_005386964 XP_005387020;XP_005387021 MODEL 9026388 protein-coding Rmc1 regulator of MON1-CCZ1 INVOLVED IN regulation of autophagy (ortholog); ASSOCIATED WITH intellectual disability (ortholog); Niemann-Pick disease type C1 (ortholog); FOUND IN late endosome membrane (ortholog); Mon1-Ccz1 complex (ortholog) NW_004955402 11676883 11699715 + 102006514 AGCD01000305;GBDF01051835;XM_005372708 XP_005372765 MODEL 9004062 protein-coding LOC102018831 olfactory receptor 2T29-like NW_004955418 29690201 29788835 - 102018831 AGCD01019480;AGCD01019481;AGCD01019482;AGCD01019483;GBDJ01253002;XM_005382327;XR_001233550;XR_001233551;XR_001233552;XR_001233553;XR_001233554;XR_260594 XP_005382384 MODEL 9019350 protein-coding LOC102011211 cationic trypsin-3-like NW_004955494 1248108 1252850 + 102011211 AGCD01061393;XM_005405394 XP_005405451 MODEL 8762622 pseudo LOC102003830 lysophospholipid acyltransferase LPCAT4 pseudogene NW_004955404 19109521 19111476 - 102003830 AGCD01003637 MODEL 9064854 protein-coding Pafah1b2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); identical protein binding (ortholog); platelet-activating factor acetyltransferase activity (ortholog); INVOLVED IN positive regulation of macroautophagy (ortholog); spermatogenesis (ortholog); PARTICIPATES IN altered Reelin signaling pathway; Reelin signaling pathway; ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN 1-alkyl-2-acetylglycerophosphocholine esterase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955412 18471621 18494082 + 102023992 AGCD01012943;AGCD01012944;GBDF01120966;XM_005378195 XP_005378252 MODEL 8746465 protein-coding LOC102017688 olfactory receptor 8K3-like NW_004955511 1324682 1325641 + 102017688 AGCD01066365;XM_005408230 XP_005408287 MODEL 15036847 trna Trnap-ggg transfer RNA proline (anticodon GGG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978807 8700722 protein-coding Sike1 suppressor of IKBKE 1 ENCODES a protein that exhibits protein kinase binding (ortholog); protein-macromolecule adaptor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN negative regulation of hippo signaling (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 47 (ortholog); RASopathy (ortholog); FOUND IN FAR/SIN/STRIPAK complex (ortholog) NW_004955435 18066428 18076422 - 102022534 AGCD01033383;AGCD01033384;GBCQ01129412;XM_005389015;XM_013516466 XP_005389072;XP_013371920 MODEL 8982804 protein-coding Ppie peptidylprolyl isomerase E ENCODES a protein that exhibits mRNA binding (ortholog); peptidyl-prolyl cis-trans isomerase activity (ortholog); poly(A) binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); positive regulation of viral genome replication (ortholog); regulation of DNA-templated transcription (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955452 17242255 17256776 + 102028929 AGCD01044545;AGCD01044546;GBBH01228246;GBDJ01225065;XM_013519652 XP_013375106 MODEL 8973419 protein-coding LOC102019301 membrane-spanning 4-domains subfamily A member 6D-like NW_004955511 4880379 4889743 - 102019301 AGCD01066538;GBCQ01057843;XM_005408078;XM_005408079 XP_005408135;XP_005408136 MODEL 9037393 trna Trnap-ugg transfer RNA proline (anticodon UGG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955530;NW_004955449;NW_004955414;NW_004955442;NW_004955550 133690;1433235;15652077;14208532;1505328 133761;1433306;15652148;14208603;1505399 +;+;+;-;+ 101978808 AGCD01015187;AGCD01037806;AGCD01041800;AGCD01069830;AGCD01072578 MODEL 9010916 protein-coding Polb DNA polymerase beta ENCODES a protein that exhibits 5'-deoxyribose-5-phosphate lyase activity (ortholog); class I DNA-(apurinic or apyrimidinic site) endonuclease activity (ortholog); damaged DNA binding (ortholog); INVOLVED IN apoptotic process (ortholog); base-excision repair (ortholog); base-excision repair, gap-filling (ortholog); ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); Colonic Neoplasms (ortholog); IMMUNODEFICIENCY 15 (ortholog); FOUND IN cytoplasm (ortholog); microtubule (ortholog); nucleus (ortholog) NW_004955536 542179 595198 - 102008456 AGCD01070729;AGCD01070730;AGCD01070731;AGCD01070732;GBDF01009059;XM_005410509 XP_005410566 MODEL 8774794 pseudo LOC102023500 uncharacterized LOC102023500 NW_004955504 3937192 4025553 + 102023500 AGCD01064876 MODEL 9001480 protein-coding LOC102008992 collagen alpha-1(III) chain-like NW_004955442 14342214 14354918 - 102008992 AGCD01037812;AGCD01037813;GBDJ01377609;XM_013517858;XM_013517859;XM_013517860 XP_013373312;XP_013373313;XP_013373314 MODEL 8707425 protein-coding LOC102021052 olfactory receptor 4K5-like NW_004955550 475406 483319 - 102021052 AGCD01072506;AGCD01072507;XM_013508546 XP_013364000 MODEL 8766378 protein-coding St13 ST13 Hsp70 interacting protein ENCODES a protein that exhibits dATP binding (ortholog); Hsp70 protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN chaperone cofactor-dependent protein refolding (ortholog); negative regulation of protein refolding (ortholog); response to bacterium (ortholog); PARTICIPATES IN androgen signaling pathway; chaperone mediated autophagy pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Rubinstein-Taybi syndrome (ortholog); FOUND IN cytosol (ortholog); protein-containing complex (ortholog) NW_004955413 26478579 26507671 - 102014548 AGCD01014445;AGCD01014446;GBCB01001147;XM_005379336 XP_005379393 MODEL 8897527 ncrna LOC102023857 uncharacterized LOC102023857 NW_004955446 5212115 5220132 + 102023857 AGCD01040059;AGCD01040060;GBDF01084434;XR_262367 MODEL 8770324 protein-coding Plekha5 pleckstrin homology domain containing A5 ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN reproductive system development (ortholog); ASSOCIATED WITH BILATERAL CLEFT LIP (ortholog); cleft lip (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); nucleoplasm (ortholog) NW_004955413 15239070 15470137 + 102012418 AGCD01014067;AGCD01014068;AGCD01014069;AGCD01014070;AGCD01014071;AGCD01014072;AGCD01014073;GBBH01165630;GBDF01085078;XM_013511432;XM_013511433;XM_013511434;XM_013511435 XP_013366886;XP_013366887;XP_013366888;XP_013366889 MODEL 8942565 protein-coding Syt9 synaptotagmin 9 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); phosphatidylserine binding (ortholog); INVOLVED IN calcium-dependent activation of synaptic vesicle fusion (ortholog); positive regulation of calcium ion-dependent exocytosis (ortholog); regulation of calcium ion-dependent exocytosis (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; insulin secretion pathway; FOUND IN dense core granule (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); secretory granule (ortholog) NW_004955414 23061163 23221986 + 102006567 AGCD01015489;AGCD01015490;AGCD01015491;AGCD01015492;AGCD01015493;AGCD01015494;GBDF01051383;GBDK01324558;XM_005380184 XP_005380241 MODEL 39133515 snrna U4 U4 spliceosomal RNA 8982150 protein-coding Tlr7 toll like receptor 7 ENCODES a protein that exhibits double-stranded RNA binding (ortholog); single-stranded RNA binding (ortholog); siRNA binding (ortholog); INVOLVED IN canonical NF-kappaB signal transduction (ortholog); cellular response to mechanical stimulus (ortholog); cellular response to virus (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH alcohol use disorder (ortholog); allergic contact dermatitis (ortholog); anogenital venereal wart (ortholog); FOUND IN cytoplasm (ortholog); early phagosome (ortholog); endoplasmic reticulum (ortholog) NW_004955544 424897 443562 - 102029665 AGCD01071705;GBDJ01403647;XM_005411374 XP_005411431 MODEL 10211058 protein-coding Sox17 SRY-box transcription factor 17 ENCODES a protein that exhibits beta-catenin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN angiogenesis (ortholog); cardiac cell fate determination (ortholog); cardiogenic plate morphogenesis (ortholog); ASSOCIATED WITH biliary atresia (ortholog); cholangiocarcinoma (ortholog); Colorectal Neoplasms (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955454 13689403 13690019 + 106149834 AGCD01045450;GBCE01132570;GBDK01360915;XM_013520252 XP_013375706 MODEL 8858992 protein-coding Tspoap1 TSPO associated protein 1 ENCODES a protein that exhibits benzodiazepine receptor binding (ortholog); voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels (ortholog); INVOLVED IN regulation of neurotransmitter secretion (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); COVID-19 (ortholog); dystonia (ortholog); FOUND IN calyx of Held (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955451 4707440 4733179 + 102027599 AGCD01043140;GBDK01066816;XM_013519267;XM_013519268;XM_013519269;XM_013519270;XM_013519271;XM_013519272 XP_013374721;XP_013374722;XP_013374723;XP_013374724;XP_013374725;XP_013374726 MODEL 9038288 ncrna LOC102010838 uncharacterized LOC102010838 NW_004955440 18922189 18925290 - 102010838 AGCD01036623;GBDF01266858;XR_262046 MODEL 10192690 pseudo LOC102013279 Ig kappa chain V-IV region-like NW_004955470 81723 82368 + 102013279 AGCD01052599 MODEL 8732278 ncrna LOC102015071 uncharacterized LOC102015071 NW_004955405 26819065 26833342 + 102015071 AGCD01005205;GBDF01249980;XR_259397 MODEL 8786245 protein-coding Smoc2 SPARC related modular calcium binding 2 ENCODES a protein that exhibits calcium ion binding (ortholog); glycosaminoglycan binding (ortholog); heparin binding (ortholog); INVOLVED IN extracellular matrix organization (ortholog); positive regulation of angiogenesis (ortholog); positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH Dentin Dysplasia, Type 1 (ortholog); Experimental Liver Cirrhosis (ortholog); schizophrenia (ortholog); FOUND IN basement membrane (ortholog); cell periphery (ortholog); extracellular matrix (ortholog) NW_004955411 4729753 4822140 - 102010981 AGCD01011588;GBCE01004050;XM_005377922 XP_005377979 MODEL 39133517 snrna U4 U4 spliceosomal RNA 9065897 protein-coding Sox18 SRY-box transcription factor 18 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN angiogenesis (ortholog); blood vessel development (ortholog); blood vessel endothelial cell migration (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); autosomal dominant nocturnal frontal lobe epilepsy (ortholog); basal cell carcinoma (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955528 204729 206772 + 102009103 AGCD01069514;AGCD01069515;GBBH01064583;GBBH01064584;XM_013507511 XP_013362965 MODEL 8879177 protein-coding Spaca9 sperm acrosome associated 9 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN axoneme assembly (ortholog); flagellated sperm motility (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 14 (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN acrosomal vesicle (ortholog); axonemal microtubule (ortholog); axonemal microtubule doublet inner sheath (ortholog) NW_004955513 2184878 2196367 + 102028322 AGCD01066870;GBDF01222876;XM_005408384;XM_005408385;XM_005408386;XM_005408387;XM_005408388;XM_005408389 XP_005408441;XP_005408442;XP_005408443;XP_005408444;XP_005408445;XP_005408446 MODEL 8717966 protein-coding Ppif peptidylprolyl isomerase F ENCODES a protein that exhibits cyclosporin A binding (ortholog); peptide binding (ortholog); peptidyl-prolyl cis-trans isomerase activity (ortholog); INVOLVED IN apoptotic mitochondrial changes (ortholog); apoptotic process (ortholog); cellular response to arsenic-containing substance (ortholog); ASSOCIATED WITH COVID-19 (ortholog); intestinal disease (ortholog); Ulcer (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrial permeability transition pore complex (ortholog) NW_004955437 13295766 13301918 - 102018024 AGCD01034655;GBCQ01093166;XM_005389888 XP_005389945 MODEL 8850973 protein-coding Raf1 Raf-1 proto-oncogene, serine/threonine kinase ENCODES a protein that exhibits adenylate cyclase activator activity (ortholog); adenylate cyclase binding (ortholog); ATP binding (ortholog); INVOLVED IN cell differentiation (ortholog); death-inducing signaling complex assembly (ortholog); ERBB2-ERBB3 signaling pathway (ortholog); PARTICIPATES IN altered extracellular signal-regulated Raf/Mek/Erk signaling pathway; ceramide signaling pathway; endothelin signaling pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Cardiomegaly (ortholog); colorectal adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955429 17980956 18049723 + 102019518 AGCD01028872;AGCD01028873;AGCD01028874;GBDF01086292;XM_005387107;XM_005387108;XM_005387109;XM_013515404;XM_013515405 XP_005387164;XP_005387165;XP_005387166;XP_013370858;XP_013370859 MODEL 10221485 ncrna LOC106149932 uncharacterized LOC106149932 NW_004955458 15456971 15460710 - 106149932 AGCD01047892;GBDI01106016;XR_001236428 MODEL 8725629 protein-coding Ptges2 prostaglandin E synthase 2 ENCODES a protein that exhibits DNA binding (ortholog); lyase activity (ortholog); prostaglandin-E synthase activity (ortholog); INVOLVED IN lipid metabolic process (ortholog); positive regulation of DNA-templated transcription (ortholog); secretion (ortholog); PARTICIPATES IN prostaglandin biosynthetic pathway; type II interferon signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); congenital disorder of glycosylation Iu (ortholog); FOUND IN cytosol (ortholog); Golgi membrane (ortholog); mitochondrion (ortholog) NW_004955419 608313 612813 + 102017772 AGCD01019598;GBDF01127195;XM_005382381 XP_005382438 MODEL 8955375 protein-coding Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); ATP binding (ortholog); GTP binding (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process (ortholog); autophagosome-lysosome fusion (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); FOUND IN autophagosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955451 13842814 13856301 - 102020190 AGCD01043508;GBCE01135031;GBDK01143126;XM_013519273 XP_013374727 MODEL 8896297 protein-coding Pdss1 decaprenyl diphosphate synthase subunit 1 ENCODES a protein that exhibits all-trans-decaprenyl-diphosphate synthase activity (ortholog); all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN isoprenoid biosynthetic process (ortholog); ubiquinone biosynthetic process (ortholog); ASSOCIATED WITH coenzyme Q10 deficiency disease (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN heterotetrameric polyprenyl diphosphate synthase complex (ortholog); mitochondrion (ortholog); transferase complex (ortholog) NW_004955429 2783847 2818204 - 102004953 AGCD01028438;GBCC01032026;GBDI01106203;XM_013515433 XP_013370887 MODEL 8894866 protein-coding Slc34a2 solute carrier family 34 member 2 ENCODES a protein that exhibits phosphate ion binding (ortholog); protein domain specific binding (ortholog); sodium ion binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); intracellular phosphate ion homeostasis (ortholog); phosphate ion transport (ortholog); PARTICIPATES IN phosphate transport pathway; ASSOCIATED WITH Drug-Related Side Effects and Adverse Reactions (ortholog); genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog) NW_004955443 19452373 19467129 - 102019967 AGCD01038626;GBBH01022814;GBDF01193795;XM_013518107 XP_013373561 MODEL 8991337 protein-coding Trdn triadin ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN cytoplasmic microtubule organization (ortholog); endoplasmic reticulum membrane organization (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH catecholaminergic polymorphic ventricular tachycardia (ortholog); catecholaminergic polymorphic ventricular tachycardia 1 (ortholog); catecholaminergic polymorphic ventricular tachycardia 5 (ortholog); FOUND IN calcium channel complex (ortholog); cytosol (ortholog); junctional membrane complex (ortholog) NW_004955436 4963945 5266727 - 102027896 AGCD01033674;AGCD01033675;AGCD01033676;AGCD01033677;GBDI01303360;XM_005389153 XP_005389210 MODEL 8720420 ncrna LOC102008179 uncharacterized LOC102008179 NW_004955405 32467481 32489401 + 102008179 AGCD01005333;GBDF01013620;XR_001235728 MODEL 8922723 protein-coding Wipf3 WAS/WASL interacting protein family member 3 ENCODES a protein that exhibits SH3 domain binding (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN synapse (ortholog) NW_004955410 31166874 31227377 + 102027826 AGCD01011317;AGCD01011318;GBCQ01031184;XM_013510497 XP_013365951 MODEL 9058451 protein-coding Pgm2l1 phosphoglucomutase 2 like 1 ENCODES a protein that exhibits glucose-1,6-bisphosphate synthase activity (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; glycogen storage disease type III pathway; glycogen storage disease type IV pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); genetic disease (ortholog); intellectual disability (ortholog) NW_004955414 17240987 17310210 + 102006649 AGCD01015235;AGCD01015236;GBCB01005167;XM_005379916;XM_005379917 XP_005379973;XP_005379974 MODEL 8728534 protein-coding Rfc2 replication factor C subunit 2 ENCODES a protein that exhibits DNA clamp loader activity (ortholog); enzyme binding (ortholog); single-stranded DNA helicase activity (ortholog); INVOLVED IN DNA-templated DNA replication (ortholog); positive regulation of DNA-directed DNA polymerase activity (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); intestinal volvulus (ortholog); FOUND IN Ctf18 RFC-like complex (ortholog); DNA replication factor C complex (ortholog) NW_004955456 13659122 13671405 + 102018895 AGCD01046609;AGCD01046610;GBDK01239240;XM_005396752;XM_013520619 XP_005396809;XP_013376073 MODEL 8731927 protein-coding Sft2d3 SFT2 domain containing 3 ASSOCIATED WITH autosomal dominant thrombophilia due to protein C deficiency (ortholog) NW_004955459 2842452 2845045 - 102026837 AGCD01048003;GBDI01227745;XM_005397594 XP_005397651 MODEL 8863476 protein-coding St14 ST14 transmembrane serine protease matriptase ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); serine-type peptidase activity (ortholog); INVOLVED IN epithelial cell morphogenesis involved in placental branching (ortholog); keratinocyte differentiation (ortholog); neural tube closure (ortholog); ASSOCIATED WITH autosomal recessive congenital ichthyosis 11 (ortholog); Breast Neoplasms (ortholog); chromosome 11 partial duplication syndrome (ortholog); FOUND IN basolateral plasma membrane (ortholog); external side of plasma membrane (ortholog); extracellular space (ortholog) NW_004955412 31091313 31129050 + 102022066 AGCD01013325;GBDK01008740;XM_005378564;XM_013511160 XP_005378621;XP_013366614 MODEL 10340971 protein-coding LOC106146829 keratin-associated protein 10-12-like NW_004955407 41605571 41606619 + 106146829 AGCD01007871;XM_013505457 XP_013360911 MODEL 8928362 protein-coding Epb42 erythrocyte membrane protein band 4.2 INVOLVED IN cell morphogenesis (ortholog); hemoglobin metabolic process (ortholog); monoatomic ion homeostasis (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN ankyrin-1 complex (ortholog); cortical cytoskeleton (ortholog); membrane (ortholog) NW_004955416 9784211 9800453 - 102029963 AGCD01017099;GBBH01193362;XM_005381368 XP_005381425 MODEL 8908393 pseudo LOC102013280 olfactory receptor 502-like NW_004955414 23688282 23689224 - 102013280 AGCD01015516 MODEL 8946667 protein-coding Ndufb3 NADH:ubiquinone oxidoreductase subunit B3 ASSOCIATED WITH Alzheimer's disease (ortholog); autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955403 477138 483122 - 102024410 AGCD01001693;GBCB01001130;XM_005373215;XM_005373216;XM_005373217;XM_013511795 XP_005373272;XP_005373273;XP_005373274;XP_013367249 MODEL 8709359 protein-coding LOC102015072 hematopoietic prostaglandin D synthase NW_004955405 4958128 4976383 - 102015072 AGCD01004669;AGCD01004670;GBDI01323199;XM_013519363 XP_013374817 MODEL 8816792 protein-coding Rbm12b RNA binding motif protein 12B ASSOCIATED WITH myoepithelioma (ortholog) NW_004955417 10067672 10097381 - 102019913 AGCD01018065;AGCD01018066;GBDF01211556;XM_005381790;XM_005381796;XM_013512761;XM_013512762;XM_013512763;XM_013512764;XM_013512765;XM_013512766;XM_013512768;XM_013512769;XM_013512770;XM_013512771;XR_001233430;XR_001233431;XR_001233432 XP_005381847;XP_005381853;XP_013368215;XP_013368216;XP_013368217;XP_013368218;XP_013368219;XP_013368220;XP_013368222;XP_013368223;XP_013368224;XP_013368225 MODEL 8732258 pseudo LOC102013281 40S ribosomal protein SA pseudogene NW_004955472 1342714 1343590 + 102013281 AGCD01053388 MODEL 8851519 ncrna LOC102007102 uncharacterized LOC102007102 NW_004955468 7023137 7030091 + 102007102 AGCD01051993;GBDF01224168;XR_263396 MODEL 8990685 ncrna LOC102006003 uncharacterized LOC102006003 NW_004955409 4395307 4403847 + 102006003 AGCD01009288;XR_259753 MODEL 8905729 protein-coding LOC102008583 olfactory receptor 2J3-like NW_004955576 1306942 1307865 + 102008583 AGCD01075370;XM_005413944 XP_005414001 MODEL 9064120 protein-coding Ppig peptidylprolyl isomerase G ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN cytosol (ortholog); nuclear matrix (ortholog); nuclear speck (ortholog) NW_004955449 4915747 4958456 - 102027130 AGCD01041902;AGCD01041903;GBBH01033225;XM_005393254;XM_005393255;XM_005393256 XP_005393311;XP_005393312;XP_005393313 MODEL 8958562 protein-coding Ptges3 prostaglandin E synthase 3 ENCODES a protein that exhibits DNA polymerase binding (ortholog); enzyme binding (ortholog); Hsp90 protein binding (ortholog); INVOLVED IN chaperone cofactor-dependent protein refolding (ortholog); chaperone-mediated protein complex assembly (ortholog); fibroblast proliferation (ortholog); PARTICIPATES IN aldosterone signaling pathway; cortisol signaling pathway; estrogen signaling pathway; ASSOCIATED WITH atherosclerosis (ortholog); autism spectrum disorder (ortholog); breast cancer (ortholog); FOUND IN actin filament (ortholog); neuronal cell body (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955458 4203075 4209967 - 102013802 AGCD01047385;GBDI01002083;GBDJ01074687;XM_005397329 XP_005397386 MODEL 8934565 protein-coding Rmdn1 regulator of microtubule dynamics 1 ENCODES a protein that exhibits microtubule binding (ortholog); FOUND IN mitochondrion (ortholog); mitotic spindle pole (ortholog); spindle microtubule (ortholog) NW_004955417 4067981 4092421 - 102006772 AGCD01017937;GBBH01050987;GBDK01316896;XM_005381750 XP_005381807 MODEL 8799028 protein-coding Qars1 glutaminyl-tRNA synthetase 1 ENCODES a protein that exhibits glutamine-tRNA ligase activity (ortholog); protein kinase binding (ortholog); protein kinase inhibitor activity (ortholog); INVOLVED IN brain development (ortholog); glutaminyl-tRNA aminoacylation (ortholog); negative regulation of apoptotic signaling pathway (ortholog); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; glutamic acid/glutamate metabolic pathway; homocarnosinosis pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); attention deficit hyperactivity disorder (ortholog); autosomal dominant intellectual developmental disorder 43 (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955532 1093444 1100591 - 102008659 AGCD01070165;GBDF01001584;XM_005410187 XP_005410244 MODEL 9058373 protein-coding LOC102003832 UDP-glucuronosyltransferase 1-8-like NW_004955453 2647244 2648138 - 102003832 AGCD01044635;GBDJ01098935;XM_005395700 XP_005395757 MODEL 9058874 protein-coding Pafah1b3 platelet activating factor acetylhydrolase 1b catalytic subunit 3 ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); identical protein binding (ortholog); platelet-activating factor acetyltransferase activity (ortholog); INVOLVED IN spermatogenesis (ortholog); PARTICIPATES IN altered Reelin signaling pathway; Reelin signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 45 (ortholog); Carpenter syndrome 2 (ortholog); FOUND IN 1-alkyl-2-acetylglycerophosphocholine esterase complex (ortholog); cytoplasm (ortholog) NW_004955555 609925 612701 + 102024055 AGCD01073039;GBDF01051852;XM_005412366;XM_013508687 XP_005412423;XP_013364141 MODEL 9015681 pseudo LOC102009740 aldose reductase-related protein 2 pseudogene NW_004955428 145019 146060 + 102009740 AGCD01027566 MODEL 8999716 protein-coding LOC102019302 olfactory receptor 8K5-like NW_004955511 1415677 1416615 + 102019302 AGCD01066366;XM_005408231 XP_005408288 MODEL 8885480 protein-coding LOC102008182 glutathione S-transferase theta-1-like NW_004955455 8317663 8323287 - 102008182 AGCD01045886;GBBH01177305;XM_005396408 XP_005396465 MODEL 9060975 protein-coding Plekha6 pleckstrin homology domain containing A6 ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955406 40066260 40200629 - 102020415 AGCD01006653;AGCD01006654;GBDK01395763;XM_005375292;XM_005375295;XM_005375306;XM_013522685;XM_013522688;XM_013522690;XM_013522693;XM_013522695;XM_013522700;XM_013522703;XM_013522704;XM_013522706;XM_013522707;XM_013522709;XM_013522711;XM_013522720;XM_013522725;XM_013522731;XM_013522738;XM_013522746;XM_013522750;XM_013522753;XM_013522759;XR_001237018 XP_005375349;XP_005375352;XP_005375363;XP_013378139;XP_013378142;XP_013378144;XP_013378147;XP_013378149;XP_013378154;XP_013378157;XP_013378158;XP_013378160;XP_013378161;XP_013378163;XP_013378165;XP_013378174;XP_013378179;XP_013378185;XP_013378192;XP_013378200;XP_013378204;XP_013378207;XP_013378213 MODEL 8771236 protein-coding Lkaaear1 LKAAEAR motif containing 1 NW_004955528 175380 179265 + 102022957 AGCD01069513;GBDF01051163;XM_005409905;XM_013507519;XM_013507520;XM_013507521;XM_013507522 XP_005409962;XP_013362973;XP_013362974;XP_013362975;XP_013362976 MODEL 8728347 protein-coding Pgm3 phosphoglucomutase 3 ENCODES a protein that exhibits phosphoacetylglucosamine mutase activity (ortholog); INVOLVED IN hemopoiesis (ortholog); protein N-linked glycosylation (ortholog); protein O-linked glycosylation (ortholog); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; glycogen biosynthetic pathway; ASSOCIATED WITH cervical cancer (ortholog); genetic disease (ortholog); hyper IgE syndrome (ortholog) NW_004955411 10904022 10925613 - 102012839 AGCD01011796;AGCD01011797;GBDF01157543;GBDJ01317986;XM_013510758 XP_013366212 MODEL 8909409 trna Trnaq-cug transfer RNA glutamine (anticodon CUG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978823 AGCD01042594;AGCD01050595;AGCD01050600;AGCD01050634;AGCD01051475;AGCD01074498 MODEL 8762395 protein-coding Prr30 proline rich 30 ASSOCIATED WITH Tatton-Brown-Rahman syndrome (ortholog) NW_004955469 9103132 9105680 - 102022182 AGCD01052490;GBDK01061542;XM_005400462 XP_005400519 MODEL 39133518 snrna U4 U4 spliceosomal RNA 8848689 protein-coding Pcdh9 protocadherin 9 INVOLVED IN forebrain development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 13q14 deletion syndrome (ortholog); FOUND IN cell-cell contact zone (ortholog); glutamatergic synapse (ortholog); growth cone (ortholog) NW_004955404 38666480 39534211 + 102029695 AGCD01004260;AGCD01004261;AGCD01004262;AGCD01004263;AGCD01004264;AGCD01004265;AGCD01004266;AGCD01004267;AGCD01004268;AGCD01004269;AGCD01004270;AGCD01004271;AGCD01004272;AGCD01004273;AGCD01004274;AGCD01004275;GBBH01105470;XM_005374195;XM_005374196;XM_005374197;XM_005374198;XM_005374199 XP_005374252;XP_005374253;XP_005374254;XP_005374255;XP_005374256 MODEL 8763593 ncrna LOC102009741 uncharacterized LOC102009741 NW_004955509 2061123 2079468 + 102009741 AGCD01065988;XR_001231659;XR_264399 MODEL 8722920 ncrna LOC102021062 uncharacterized LOC102021062 NW_004955447 10776188 10778367 - 102021062 AGCD01040889;GBDF01017047;XR_262418 MODEL 10249118 ncrna LOC106149933 uncharacterized LOC106149933 NW_004955458 12709287 12721892 - 106149933 AGCD01047788;GBCB01068735;XR_001236429;XR_001236430 MODEL 8925580 ncrna LOC102013282 uncharacterized LOC102013282 NW_004955415 3826712 3849145 + 102013282 AGCD01015954;AGCD01015955;AGCD01015956;XR_001233214;XR_260262 MODEL 9051784 pseudo LOC102005667 uncharacterized LOC102005667 NW_004955454 13267651 13286711 + 102005667 AGCD01045432 MODEL 8906414 protein-coding Tspyl1 TSPY like 1 ENCODES a protein that exhibits enzyme binding (ortholog); identical protein binding (ortholog); ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); COVID-19 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955526 539178 552120 + 102011239 AGCD01069240;GBDI01081447;XM_013507351 XP_013362805 MODEL 8735666 ncrna LOC102006004 uncharacterized LOC102006004 NW_004955461 3891790 3962423 - 102006004 AGCD01048855;AGCD01048856;AGCD01048857;GBDK01220667;XR_263078 MODEL 39131551 protein-coding PTGES3L prostaglandin E synthase 3 like 8833508 protein-coding Sytl1 synaptotagmin like 1 ENCODES a protein that exhibits neurexin family protein binding (ortholog); INVOLVED IN exocytosis (ortholog); vesicle-mediated transport (ortholog); FOUND IN melanosome (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955452 6610089 6616869 + 102030379 AGCD01044117;GBBH01092720;XM_013519617 XP_013375071 MODEL 8909297 protein-coding Wipi1 WD repeat domain, phosphoinositide interacting 1 ENCODES a protein that exhibits nuclear androgen receptor binding (ortholog); nuclear estrogen receptor binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH Acrodysostosis 1, with or without Hormone Resistance (ortholog); cholestasis (ortholog); lipid storage disease (ortholog); FOUND IN autophagosome membrane (ortholog); cytoplasm (ortholog); endosome membrane (ortholog) NW_004955478 4309975 4341107 + 102028856 AGCD01055847;GBDF01159484;XM_013503209;XM_013503210;XM_013503211 XP_013358663;XP_013358664;XP_013358665 MODEL 8779950 protein-coding LOC102010839 cytochrome P450 2S1 ENCODES a protein that exhibits hydro-lyase activity (ortholog); monooxygenase activity (ortholog); thromboxane-A synthase activity (ortholog); INVOLVED IN icosanoid metabolic process (ortholog); prostaglandin metabolic process (ortholog); retinoic acid metabolic process (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955555 167634 183572 + 102010839 AGCD01073024;GBDK01317297;XM_005412321 XP_005412378 MODEL 8701648 protein-coding Rfc3 replication factor C subunit 3 ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); DNA binding (ortholog); DNA clamp loader activity (ortholog); INVOLVED IN DNA replication (ortholog); DNA-templated DNA replication (ortholog); positive regulation of DNA-directed DNA polymerase activity (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; FOUND IN Ctf18 RFC-like complex (ortholog); DNA replication factor C complex (ortholog) NW_004955431 12071465 12084570 - 102007456 AGCD01030254;GBCB01075231;XM_005387702 XP_005387759 MODEL 8767910 ncrna LOC102019303 uncharacterized LOC102019303 NW_004955513 1028739 1031639 - 102019303 AGCD01066838;GBCB01080479;XR_001231742 MODEL 8926598 gene LOC102008184 Ig lambda-2 chain V region-like NW_004955455 6522852 6523304 + 102008184 AGCD01045801;XM_005396573 MODEL 8942614 ncrna LOC102015076 uncharacterized LOC102015076 NW_004955454 16835868 16837506 + 102015076 AGCD01045529;GBDF01016923;XR_262801;XR_262802 MODEL 8843378 protein-coding Pold1 DNA polymerase delta 1, catalytic subunit ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); chromatin binding (ortholog); damaged DNA binding (ortholog); INVOLVED IN base-excision repair, gap-filling (ortholog); cellular response to UV (ortholog); DNA biosynthetic process (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH bile duct cancer (ortholog); breast cancer (ortholog); colon cancer (ortholog); FOUND IN aggresome (ortholog); chromosome, telomeric region (ortholog); cytosol (ortholog) NW_004955559 712375 730551 - 102020387 AGCD01073609;GBBH01102863;XM_005412790;XM_013509023;XM_013509024;XM_013509025;XM_013509026;XM_013509027 XP_005412847;XP_013364477;XP_013364478;XP_013364479;XP_013364480;XP_013364481 MODEL 8761883 protein-coding LOC102023860 zinc finger protein 264-like NW_004955584 166775 178268 - 102023860 AGCD01075920;AGCD01075921;AGCD01075922;AGCD01075923;GBBH01221998;GBCE01134653;XM_013509843 XP_013365297 MODEL 39133520 snrna U4 U4 spliceosomal RNA 8897145 pseudo LOC102009743 tubulin alpha-3E chain pseudogene NW_004955429 3059738 3060342 - 102009743 AGCD01028454 MODEL 8756941 protein-coding Pcdha1 protocadherin alpha 1 ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN endoplasmic reticulum (ortholog); membrane (ortholog) NW_004955611 363566 396184 - 102019455 AGCD01077164;AGCD01077165;AGCD01077166;AGCD01077167;AGCD01077168;AGCD01077169;AGCD01077170;GBBH01112798;XM_013510125 XP_013365579 MODEL 8721762 pseudo LOC102008585 U6 snRNA-associated Sm-like protein LSm3 pseudogene NW_004955583 83314 85152 - 102008585 AGCD01075793 MODEL 8798465 protein-coding Sfi1 SFI1 centrin binding protein ENCODES a protein that exhibits phosphatase binding (ortholog); FOUND IN centriole (ortholog) NW_004955455 5667105 5744878 + 102012729 AGCD01045746;AGCD01045747;AGCD01045748;AGCD01045749;AGCD01045750;AGCD01045751;GBDK01319767;XM_005396332;XM_013520407;XM_013520408;XM_013520409;XM_013520410;XM_013520412;XM_013520413;XM_013520414;XM_013520415;XM_013520416;XM_013520417 XP_005396389;XP_013375861;XP_013375862;XP_013375863;XP_013375864;XP_013375866;XP_013375867;XP_013375868;XP_013375869;XP_013375870;XP_013375871 MODEL 9027589 protein-coding Tlr8 toll like receptor 8 ENCODES a protein that exhibits DNA binding (ortholog); double-stranded RNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); defense response to virus (ortholog); negative regulation of interleukin-12 production (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH alcohol use disorder (ortholog); anogenital venereal wart (ortholog); autistic disorder (ortholog); FOUND IN external side of plasma membrane (ortholog) NW_004955544 302027 317110 - 102028898 AGCD01071699;GBDK01322932;XM_005411372;XM_005411373 XP_005411429;XP_005411430 MODEL 8840237 protein-coding Sil1 SIL1 nucleotide exchange factor ENCODES a protein that exhibits adenyl-nucleotide exchange factor activity (ortholog); identical protein binding (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); cataract (ortholog); COVID-19 (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955418 1322644 1583352 + 102022083 AGCD01018715;AGCD01018716;AGCD01018717;AGCD01018718;AGCD01018719;AGCD01018720;AGCD01018721;AGCD01018722;AGCD01018723;GBDF01053304;XM_005382084;XM_005382085;XM_005382087;XM_013512922;XM_013512923 XP_005382141;XP_005382142;XP_005382144;XP_013368376;XP_013368377 MODEL 8743504 protein-coding LOC102007103 cytochrome P450 2D17-like NW_004955413 27588186 27597795 - 102007103 AGCD01014517;GBCB01038107;XM_005379404;XM_013511460;XM_013511461 XP_005379461;XP_013366914;XP_013366915 MODEL 10097631 ncrna LOC106149934 uncharacterized LOC106149934 NW_004955458 12690350 12694313 - 106149934 AGCD01047788;XR_001236431 MODEL 8909255 protein-coding Bcl7b BAF chromatin remodeling complex subunit BCL7B ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); intestinal volvulus (ortholog); FOUND IN SWI/SNF complex (ortholog) NW_004955456 14149484 14166753 + 102027944 AGCD01046634;GBDK01074047;XM_005396784;XM_013520575;XR_262902 XP_005396841;XP_013376029 MODEL 8762158 protein-coding Pafah2 platelet activating factor acetylhydrolase 2 ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); platelet-activating factor acetyltransferase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); retinitis pigmentosa 59 (ortholog) NW_004955452 5440766 5474483 - 102011169 AGCD01044033;AGCD01044034;AGCD01044035;AGCD01044036;GBDK01171480;XM_005394836 XP_005394893 MODEL 8912687 ncrna LOC102007107 uncharacterized LOC102007107 NW_004955414 22942884 22992663 + 102007107 AGCD01015486;GBDF01051420;XR_260189 MODEL 10323357 ncrna LOC106146830 uncharacterized LOC106146830 NW_004955497 2290740 2360037 + 106146830 AGCD01062502;AGCD01062503;AGCD01062504;AGCD01062505;AGCD01062506;AGCD01062507;AGCD01081654;GBDF01110751;XR_001231431 MODEL 8931860 protein-coding Epc1 enhancer of polycomb homolog 1 ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); enzyme-substrate adaptor activity (ortholog); INVOLVED IN double-strand break repair via homologous recombination (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of gene expression, epigenetic (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH Neointima (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nuclear body (ortholog); nuclear membrane (ortholog) NW_004955429 23819261 23910279 - 102005825 AGCD01029081;AGCD01029082;AGCD01029083;GBCE01136615;XM_005387225;XM_013515434 XP_005387282;XP_013370888 MODEL 8934945 pseudo LOC102023506 transcription factor SPT20 homolog pseudogene NW_004955509 4726423 4729593 + 102023506 AGCD01066087;AGCD01066088;XM_005407860 MODEL 8701327 ncrna LOC102018834 uncharacterized LOC102018834 NW_004955485 1420370 1427704 - 102018834 AGCD01058479;GBCE01148220;XR_263904 MODEL 10335251 protein-coding Tlr9 toll like receptor 9 ENCODES a protein that exhibits interleukin-1 receptor binding (ortholog); pattern recognition receptor activity (ortholog); siRNA binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); canonical NF-kappaB signal transduction (ortholog); cellular response to chloroquine (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH Achlorhydria (ortholog); acute kidney failure (ortholog); acute necrotizing pancreatitis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cytoplasm (ortholog) NW_004955532 3828645 3832699 - 106146245 AGCD01070299;GBBH01177352;XM_005410346;XM_013507652;XM_013507653 XP_005410403;XP_013363106;XP_013363107 MODEL 8834409 protein-coding Prr34 PRR34 long non-coding RNA ASSOCIATED WITH intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog) NW_004955413 30237791 30247142 - 102006761 AGCD01014603;GBDI01370966;XM_013511589 XP_013367043 MODEL 8830025 ncrna LOC102017696 uncharacterized LOC102017696 NW_004955435 17195753 17201846 - 102017696 AGCD01033350;GBDF01052175;XR_001234878;XR_261720 MODEL 9063563 protein-coding Rag1 recombination activating 1 ENCODES a protein that exhibits endonuclease activity (ortholog); histone binding (ortholog); identical protein binding (ortholog); INVOLVED IN adaptive immune response (ortholog); B cell differentiation (ortholog); negative regulation of T cell apoptotic process (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); Albuminuria (ortholog); Alpha/Beta T-Cell Lymphopenia with Gamma/Delta T-Cell Expansion, Severe Cytomegalovirus Infection, and Autoimmunity (ortholog); FOUND IN nucleus (ortholog) NW_004955422 9891878 9928569 - 102004611 AGCD01022724;AGCD01022725;AGCD01022726;GBDF01299674;JN414958;KF590658;XM_005384104;XM_013514280 AEP18785;AGW05221;XP_005384161;XP_013369734 MODEL 8836600 protein-coding Rfc4 replication factor C subunit 4 ENCODES a protein that exhibits DNA clamp loader activity (ortholog); enzyme binding (ortholog); single-stranded DNA helicase activity (ortholog); INVOLVED IN DNA-templated DNA replication (ortholog); positive regulation of DNA-directed DNA polymerase activity (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH 3MC syndrome 1 (ortholog); Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); FOUND IN Ctf18 RFC-like complex (ortholog); DNA replication factor C complex (ortholog); Elg1 RFC-like complex (ortholog) NW_004955420 20948549 20967845 + 102028973 AGCD01021114;AGCD01021115;AGCD01021116;AGCD01021117;GBBH01051801;XM_005383263 XP_005383320 MODEL 8751388 protein-coding Rxra retinoid X receptor alpha ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA binding (ortholog); DNA binding domain binding (ortholog); INVOLVED IN axon regeneration (ortholog); camera-type eye development (ortholog); cardiac muscle cell proliferation (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH alcoholic cardiomyopathy (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); congenital heart disease (ortholog); FOUND IN axon (ortholog); chromatin (ortholog); nucleus (ortholog) NW_004955513 3313544 3386544 + 102024492 AGCD01066901;GBDJ01079793;XM_005408467;XM_013506714 XP_005408524;XP_013362168 MODEL 8746222 protein-coding Slc34a3 solute carrier family 34 member 3 ENCODES a protein that exhibits sodium:phosphate symporter activity (ortholog); INVOLVED IN intracellular phosphate ion homeostasis (ortholog); phosphate ion transport (ortholog); response to magnesium ion (ortholog); PARTICIPATES IN phosphate transport pathway; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog) NW_004955513 5228575 5233501 + 102010720 AGCD01066963;GBCQ01002877;XM_005408605;XM_005408606 XP_005408662;XP_005408663 MODEL 8934201 protein-coding LOC102015081 17-beta-hydroxysteroid dehydrogenase type 6-like NW_004955458 4337021 4399484 + 102015081 AGCD01047406;AGCD01047407;AGCD01047408;AGCD01047409;AGCD01047410;AGCD01047411;GBDF01118072;XM_013521022 XP_013376476 MODEL 9066675 pseudo LOC102021063 chromobox protein homolog 3 pseudogene NW_004955578 1108396 1109003 - 102021063 AGCD01075510 MODEL 8927331 protein-coding Ppih peptidylprolyl isomerase H ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN positive regulation of viral genome replication (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); glucose transporter type 1 deficiency syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); U4/U6 snRNP (ortholog) NW_004955537 2211566 2229444 + 102010198 AGCD01070919;GBDF01086103;XM_005410598 XP_005410655 MODEL 8961855 protein-coding LOC102009744 lipocalin-1-like NW_004955513 2591903 2597295 + 102009744 AGCD01066882;GBBH01003724;XM_005408420 XP_005408477 MODEL 9014846 protein-coding Rfc5 replication factor C subunit 5 ENCODES a protein that exhibits DNA clamp loader activity (ortholog); enzyme binding (ortholog); single-stranded DNA helicase activity (ortholog); INVOLVED IN DNA-templated DNA replication (ortholog); positive regulation of DNA-directed DNA polymerase activity (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; FOUND IN Ctf18 RFC-like complex (ortholog); DNA replication factor C complex (ortholog) NW_004955455 13325912 13337241 - 102020758 AGCD01046069;GBDF01300839;XM_005396539 XP_005396596 MODEL 8794768 protein-coding LOC102015082 olfactory receptor 2AP1-like NW_004955458 2261557 2262498 - 102015082 AGCD01047222;XM_005397493 XP_005397550 MODEL 8726959 protein-coding Sox2 SRY-box transcription factor 2 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN adenohypophysis development (ortholog); anatomical structure formation involved in morphogenesis (ortholog); cell fate commitment (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); amenorrhea (ortholog); aniridia (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955420 10671888 10674080 + 102023039 AGCD01020783;GBBH01034135;XM_005383075 XP_005383132 MODEL 8978167 protein-coding St18 ST18 C2H2C-type zinc finger transcription factor ENCODES a protein that exhibits DNA binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN interleukin-1-mediated signaling pathway (ortholog); interleukin-6-mediated signaling pathway (ortholog); negative regulation of cell population proliferation (ortholog); FOUND IN nucleus (ortholog); protein-DNA complex (ortholog) NW_004955454 11715538 12016396 - 102027811 AGCD01045395;AGCD01045396;AGCD01045397;AGCD01045398;AGCD01045399;AGCD01045400;AGCD01045401;AGCD01045402;AGCD01045403;GBDF01253942;XM_005396053;XM_005396055;XM_013520259;XM_013520260;XM_013520261;XM_013520262;XM_013520263 XP_005396110;XP_005396112;XP_013375713;XP_013375714;XP_013375715;XP_013375716;XP_013375717 MODEL 8868523 protein-coding Llcfc1 LLLL and CFNLAS motif containing 1 INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog) NW_004955494 688212 689634 - 102030644 AGCD01061383;GBCQ01060938;XM_005405379 XP_005405436 MODEL 8925172 protein-coding Ndufb4 NADH:ubiquinone oxidoreductase subunit B4 ASSOCIATED WITH Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955427 20117550 20124114 + 102024708 AGCD01027394;GBDJ01025734;XM_005386467 XP_005386524 MODEL 8834985 protein-coding Ppil1 peptidylprolyl isomerase like 1 ENCODES a protein that exhibits disordered domain specific binding (ortholog); peptidyl-prolyl cis-trans isomerase activity (ortholog); INVOLVED IN embryonic brain development (ortholog); mRNA splicing, via spliceosome (ortholog); protein peptidyl-prolyl isomerization (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH genetic disease (ortholog); microcephaly (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nucleus (ortholog); U2-type catalytic step 2 spliceosome (ortholog) NW_004955437 6131013 6143474 + 102024382 AGCD01034418;AGCD01034419;AGCD01034420;GBBH01121509;XM_005389635 XP_005389692 MODEL 8740356 protein-coding LOC102010840 serine protease 29-like NW_004955442 15998729 16000624 + 102010840 AGCD01037890;GBBH01115240;XM_005391588 XP_005391645 MODEL 9017592 ncrna LOC102008997 uncharacterized LOC102008997 NW_004955402 56853757 56893100 + 102008997 AGCD01001479;GBDF01111279;XR_001230748;XR_259106 MODEL 9039484 protein-coding Pag1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 ENCODES a protein that exhibits SH2 domain binding (ortholog); INVOLVED IN intracellular signal transduction (ortholog); negative regulation of T cell activation (ortholog); regulation of T cell activation (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); schizophrenia (ortholog); FOUND IN membrane raft (ortholog); plasma membrane (ortholog) NW_004955444 487028 636440 + 102008672 AGCD01038674;AGCD01038675;AGCD01038676;AGCD01038677;AGCD01038678;AGCD01038679;AGCD01038680;GBDK01282473;XM_005392057;XM_005392058;XM_013518187;XR_001235521 XP_005392114;XP_005392115;XP_013373641 MODEL 8980172 protein-coding Rbm15 RNA binding motif protein 15 ENCODES a protein that exhibits mRNA binding (ortholog); RNA binding (ortholog); INVOLVED IN branching involved in blood vessel morphogenesis (ortholog); dosage compensation by inactivation of X chromosome (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 32 (ortholog); hereditary spastic paraplegia 63 (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955435 13846297 13854639 + 102018321 AGCD01033212;GBDF01234226;XM_005388923 XP_005388980 MODEL 8858267 protein-coding Wipi2 WD repeat domain, phosphoinositide interacting 2 ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagosome maturation (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH Baraitser-Winter syndrome 1 (ortholog); INTELLECTUAL DEVELOPMENTAL DISORDER WITH SHORT STATURE AND VARIABLE SKELETAL ANOMALIES (ortholog); megacolon (ortholog); FOUND IN autophagosome (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955460 10090343 10132724 + 102026612 AGCD01048572;AGCD01048573;GBDF01050079;XM_005397828;XM_005397829;XM_005397830;XM_005397831;XM_005397833;XM_013521133;XM_013521134 XP_005397885;XP_005397886;XP_005397887;XP_005397888;XP_005397890;XP_013376587;XP_013376588 MODEL 8805875 protein-coding LOC102019312 zinc finger protein 627-like NW_004955524 331603 343440 - 102019312 AGCD01068675;GBDI01011137;XM_005409479 XP_005409536 MODEL 8933303 protein-coding Treh trehalase ENCODES a protein that exhibits alpha,alpha-trehalase activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); trehalose catabolic process (ortholog); PARTICIPATES IN trehalose degradation pathway; ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog) NW_004955412 19801153 19815394 - 102016901 AGCD01012978;GBCE01024811;XM_005378269;XM_005378270;XM_005378271;XM_005378273 XP_005378326;XP_005378327;XP_005378328;XP_005378330 MODEL 8802362 pseudo LOC102023508 olfactory receptor 5M10-like NW_004955511 1696693 1697564 + 102023508 AGCD01066377 MODEL 9050718 ncrna LOC102023863 uncharacterized LOC102023863 NW_004955403 52246156 52249056 - 102023863 AGCD01003003;GBDF01111470;XR_259261 MODEL 39133522 snrna U4 U4 spliceosomal RNA 8940992 protein-coding Tlx1 T cell leukemia homeobox 1 INVOLVED IN animal organ formation (ortholog); cell fate commitment (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); Aneuploidy (ortholog); Neoplastic Cell Transformation (ortholog) NW_004955485 9070601 9076063 - 102018292 AGCD01058744;GBCE01041371;XM_005403934 XP_005403991 MODEL 8897742 protein-coding Ppil2 peptidylprolyl isomerase like 2 ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-ubiquitin ligase activity (ortholog); INVOLVED IN protein localization to plasma membrane (ortholog); protein polyubiquitination (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955442 17426154 17449079 - 102014295 AGCD01037955;GBBH01166387;XM_005391698;XM_005391699;XM_013517867;XM_013517868;XM_013517869;XM_013517870;XM_013517871;XR_001235406 XP_005391755;XP_005391756;XP_013373321;XP_013373322;XP_013373323;XP_013373324;XP_013373325 MODEL 8781061 protein-coding Qdpr quinoid dihydropteridine reductase ENCODES a protein that exhibits 6,7-dihydropteridine reductase activity (ortholog); identical protein binding (ortholog); NADH binding (ortholog); INVOLVED IN cellular response to xenobiotic stimulus (ortholog); L-phenylalanine catabolic process (ortholog); liver development (ortholog); PARTICIPATES IN dopa responsive dystonia pathway; dopamine biosynthetic pathway; epinephrine biosynthetic pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); BH4-deficient hyperphenylalaninemia C (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog) NW_004955480 6646088 6666866 + 102024227 AGCD01056687;GBBH01163988;GBDF01119216;XM_005402546 XP_005402603 MODEL 8882384 protein-coding Rxrb retinoid X receptor beta ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); nuclear receptor activity (ortholog); INVOLVED IN cardiac muscle cell proliferation (ortholog); cellular response to retinoic acid (ortholog); in utero embryonic development (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); Breast Neoplasms (ortholog); Disease Progression (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955437 1767833 1774401 - 102028128 AGCD01034233;GBCE01004573;XM_005389474;XM_005389475;XM_005389477 XP_005389531;XP_005389532;XP_005389534 MODEL 8727485 protein-coding Tspyl2 TSPY like 2 INVOLVED IN negative regulation of cell growth (ortholog); negative regulation of DNA replication (ortholog); regulation of protein kinase activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Endometrial Neoplasms (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955475 160768 167359 + 102010477 AGCD01054680;GBBH01208279;XM_005401476 XP_005401533 MODEL 39131294 protein-coding PCDHA11 protocadherin alpha 11 8709027 protein-coding Smox spermine oxidase ENCODES a protein that exhibits polyamine oxidase activity (ortholog); INVOLVED IN polyamine catabolic process (ortholog); spermine catabolic process (ortholog); PARTICIPATES IN polyamine metabolic pathway; ASSOCIATED WITH Huntington's disease-like 1 (ortholog); Inosine Triphosphatase Deficiency (ortholog); middle cerebral artery infarction (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955415 14937438 14971874 + 102005704 AGCD01016319;AGCD01016320;GBDF01089694;XM_005380812;XM_005380813;XM_005380814;XM_005380815;XM_005380816;XM_013512389;XM_013512390 XP_005380869;XP_005380870;XP_005380871;XP_005380872;XP_005380873;XP_013367843;XP_013367844 MODEL 8949000 protein-coding Bcl7c BAF chromatin remodeling complex subunit BCL7C ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); dilated cardiomyopathy (ortholog); Ependymomas (ortholog); FOUND IN SWI/SNF complex (ortholog) NW_004955493 7728229 7733086 - 102022395 AGCD01061222;GBCC01020237;XM_005405278 XP_005405335 MODEL 9014562 trna Trnaq-uug transfer RNA glutamine (anticodon UUG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955483;NW_004955465;NW_004955465;NW_004955451 757927;13819250;13329350;12259037 757998;13819321;13329421;12259108 +;+;-;- 101978822 AGCD01043382;AGCD01050600;AGCD01050626;AGCD01057629 MODEL 8862503 protein-coding Pcdhac1 protocadherin alpha subfamily C, 1 ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955611 229711 242740 - 102017525 AGCD01077153;AGCD01077154;XM_005415307 XP_005415364 MODEL 8795159 protein-coding Epc2 enhancer of polycomb homolog 2 INVOLVED IN positive regulation of double-strand break repair via homologous recombination (ortholog); regulation of cell cycle (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 1 (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nucleosome (ortholog) NW_004955440 14573960 14645171 + 102026045 AGCD01036473;GBDK01240424;XM_005390801 XP_005390858 MODEL 8940206 protein-coding Ndufb5 NADH:ubiquinone oxidoreductase subunit B5 ASSOCIATED WITH acute myocardial infarction (ortholog); COVID-19 (ortholog); Currarino syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955420 8778271 8793634 + 102013175 AGCD01020732;AGCD01020733;GBBH01033131;GBDF01009190;XM_013513573 XP_013369027 MODEL 8951694 protein-coding Pold2 DNA polymerase delta 2, accessory subunit INVOLVED IN DNA biosynthetic process (ortholog); DNA replication (ortholog); DNA-templated DNA replication (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN delta DNA polymerase complex (ortholog); nucleoplasm (ortholog); zeta DNA polymerase complex (ortholog) NW_004955456 7853476 7860108 + 102021629 AGCD01046435;GBDF01080182;XM_005396671;XM_013520626 XP_005396728;XP_013376080 MODEL 8959521 protein-coding Sfta2 surfactant associated 2 ASSOCIATED WITH megacolon (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog) NW_004955583 865226 866360 - 102022442 AGCD01075871;GBDK01021573;XM_005414328 XP_005414385 MODEL 8933673 protein-coding LOC102017700 olfactory receptor 2D2-like NW_004955537 2595360 2596310 + 102017700 AGCD01070931;XM_005410720 XP_005410777 MODEL 9027756 pseudo LOC102013284 histone deacetylase 1 pseudogene NW_004955474 8472117 8474602 + 102013284 AGCD01054554 MODEL 8765177 pseudo LOC102019317 ubiquitin-like domain-containing CTD phosphatase 1 pseudogene NW_004955435 16026713 16028322 + 102019317 AGCD01033293 MODEL 8730422 pseudo LOC102023509 T-complex protein 1 subunit eta pseudogene NW_004955430 22329815 22331867 - 102023509 AGCD01029786 MODEL 10136071 ncrna LOC106149935 uncharacterized LOC106149935 NW_004955458 12708341 12709134 - 106149935 AGCD01047788;GBDF01013092;XR_001236432 MODEL 8739190 pseudo LOC102023868 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 pseudogene NW_004955452 15134132 15134925 + 102023868 AGCD01044480 MODEL 8742146 pseudo LOC102013288 T-cell activation inhibitor, mitochondrial-like NW_004955415 31054123 31073082 + 102013288 AGCD01016669 MODEL 8967823 protein-coding Sfmbt1 Scm like with four mbt domains 1 ENCODES a protein that exhibits histone binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of muscle organ development (ortholog); ASSOCIATED WITH congenital disorder of glycosylation In (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955430 2850149 3014859 - 102027772 AGCD01029182;AGCD01029183;AGCD01029184;AGCD01029185;AGCD01029186;AGCD01029187;GBBH01041099;GBDF01043456;XM_013515695;XM_013515696 XP_013371149;XP_013371150 MODEL 8966444 protein-coding Plekha7 pleckstrin homology domain containing A7 ENCODES a protein that exhibits delta-catenin binding (ortholog); INVOLVED IN cell-cell adhesion mediated by cadherin (ortholog); epithelial cell-cell adhesion (ortholog); pore complex assembly (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH angle-closure glaucoma (ortholog); Cardiac Fibrosis (ortholog); cleft lip (ortholog); FOUND IN cell junction (ortholog); cell-cell junction (ortholog); centrosome (ortholog) NW_004955414 31655391 31784009 - 102006236 AGCD01015759;AGCD01015760;GBCE01009822;XM_005380369;XM_013511964;XM_013511965;XM_013511966;XM_013511967 XP_005380426;XP_013367418;XP_013367419;XP_013367420;XP_013367421 MODEL 8855321 protein-coding Pgm5 phosphoglucomutase 5 ENCODES a protein that exhibits intramolecular phosphotransferase activity (ortholog); phosphoglucomutase activity (ortholog); ASSOCIATED WITH juvenile rheumatoid arthritis (ortholog); FOUND IN adherens junction (ortholog); cell-substrate junction (ortholog); costamere (ortholog) NW_004955434 4489054 4670879 - 102009869 AGCD01032163;AGCD01032164;AGCD01032165;AGCD01032166;GBBH01126452;GBCB01073451;XM_005388582 XP_005388639 MODEL 9034602 protein-coding Tspyl4 TSPY like 4 ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); melanoma (ortholog) NW_004955526 562891 567892 + 102011580 AGCD01069241;AGCD01069242;GBBH01061852;GBCB01020779;XM_005409782 XP_005409839 MODEL 8733767 protein-coding LOC102015083 uncharacterized LOC102015083 NW_004955409 29656707 29658949 + 102015083 AGCD01010278;GBCE01141162;GBDF01012029;XM_013510388 XP_013365842 MODEL 8872805 pseudo LOC102008185 ATP-dependent RNA helicase DDX3X-like NW_004955407 21081761 21090500 + 102008185 AGCD01007350 MODEL 9038899 protein-coding Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); identical protein binding (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); positive regulation of autophagosome assembly (ortholog); ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); familial melanoma (ortholog); FOUND IN autophagosome (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955458 5315083 5327617 + 102007087 AGCD01047474;AGCD01047475;AGCD01047476;GBDI01062171;GBDK01128471;XM_005397400 XP_005397457 MODEL 8964843 protein-coding Pdss2 decaprenyl diphosphate synthase subunit 2 ENCODES a protein that exhibits all-trans-decaprenyl-diphosphate synthase activity (ortholog); all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN cerebellum development (ortholog); isoprenoid biosynthetic process (ortholog); regulation of body fluid levels (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); coenzyme Q10 deficiency disease (ortholog); focal segmental glomerulosclerosis (ortholog); FOUND IN cytosol (ortholog); heterotetrameric polyprenyl diphosphate synthase complex (ortholog); mitochondrion (ortholog) NW_004955411 32426604 32714337 - 102009477 AGCD01012317;AGCD01012318;AGCD01012319;AGCD01012320;AGCD01012321;AGCD01012322;AGCD01012323;AGCD01012324;AGCD01012325;AGCD01012326;AGCD01012327;AGCD01012328;AGCD01012329;AGCD01012330;AGCD01012331;AGCD01012332;AGCD01012333;AGCD01012334;AGCD01012335;GBCQ01099837;XM_005377839 XP_005377896 MODEL 8802499 protein-coding Prr35 proline rich 35 ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog) NW_004955442 16639379 16644669 - 102025948 AGCD01037905;GBCQ01101664;XM_005391639;XM_005391640 XP_005391696;XP_005391697 MODEL 9036953 protein-coding Bcl9 BCL9 transcription coactivator ENCODES a protein that exhibits beta-catenin binding (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); myoblast differentiation (ortholog); myotube differentiation involved in skeletal muscle regeneration (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); cataract 1 multiple types (ortholog); cataract 46 juvenile-onset (ortholog); FOUND IN beta-catenin-TCF complex (ortholog); cis-Golgi network (ortholog); cytoplasm (ortholog) NW_004955568 785361 866986 - 102013353 AGCD01074525;AGCD01074526;GBCE01104993;XM_005413460;XM_005413462;XM_005413463;XM_013509351 XP_005413517;XP_005413519;XP_005413520;XP_013364805 MODEL 8982276 ncrna LOC102005668 uncharacterized LOC102005668 NW_004955408 4130103 4136421 + 102005668 AGCD01008089;GBDF01241145;XR_259658 MODEL 8728830 protein-coding Rmdn2 regulator of microtubule dynamics 2 ENCODES a protein that exhibits microtubule binding (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Lynch syndrome (ortholog); RASopathy (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); mitochondrion (ortholog) NW_004955441 5710487 5776351 + 102008032 AGCD01036882;AGCD01036883;AGCD01036884;AGCD01036885;AGCD01036886;GBBH01082805;XM_005390877;XM_005390880;XM_013517543;XM_013517544 XP_005390934;XP_005390937;XP_013372997;XP_013372998 MODEL 8881119 ncrna LOC102006005 uncharacterized LOC102006005 NW_004955462 6714177 6722753 - 102006005 AGCD01049288;GBDI01311251;XR_263100;XR_263101 MODEL 8980825 ncrna LOC102008587 uncharacterized LOC102008587 NW_004955450 5676012 5702239 + 102008587 AGCD01042508;AGCD01042509;GBDF01280526;XR_001235879;XR_262532 MODEL 8975974 protein-coding Wiz WIZ zinc finger ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); histone methyltransferase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN positive regulation of nuclear cell cycle DNA replication (ortholog); protein stabilization (ortholog); ASSOCIATED WITH atherosclerosis (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN midbody (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955495 7810145 7834908 + 102005610 AGCD01062166;AGCD01062167;AGCD01062168;GBBH01165686;GBDI01322868;XM_013505122 XP_013360576 MODEL 8958779 ncrna LOC102021064 uncharacterized LOC102021064 NW_004955402 8308752 8322315 + 102021064 AGCD01000193;GBCQ01085996;XR_001236468;XR_259044 MODEL 8735834 protein-coding Spacdr sperm acrosome developmental regulator INVOLVED IN spermatid development (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955410 31509985 31513231 - 102019038 AGCD01011327;GBDF01001669;XM_005377495;XM_005377496 XP_005377552;XP_005377553 MODEL 8888627 ncrna LOC102009749 uncharacterized LOC102009749 NW_004955519 2189856 2320813 - 102009749 AGCD01067917;AGCD01067918;AGCD01067919;AGCD01067920;AGCD01067921;AGCD01067922;AGCD01067923;AGCD01067924;GBDK01382059;XR_001231859;XR_001231860;XR_001231861 MODEL 8723248 ncrna LOC102006006 uncharacterized LOC102006006 NW_004955462 11471552 11476166 - 102006006 AGCD01049391;GBDF01209715;XR_001236585 MODEL 10093916 ncrna LOC106146831 uncharacterized LOC106146831 NW_004955497 2654789 2660147 - 106146831 AGCD01062512;GBDF01079595;XR_001231432 MODEL 8823307 pseudo LOC102012068 ribose-phosphate pyrophosphokinase 1-like NW_004955409 26469788 26470881 - 102012068 AGCD01010186 MODEL 8819623 protein-coding Wls Wnt ligand secretion mediator ENCODES a protein that exhibits identical protein binding (ortholog); mu-type opioid receptor binding (ortholog); Wnt-protein binding (ortholog); INVOLVED IN anterior/posterior axis specification (ortholog); cementum mineralization (ortholog); exocrine pancreas development (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); intellectual disability (ortholog); Zaki syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955423 23374401 23465308 + 102013625 AGCD01024005;GBDK01002213;XM_005385271 XP_005385328 MODEL 8983212 protein-coding LOC102019320 mamu class II histocompatibility antigen, DR alpha chain ENCODES a protein that exhibits peptide antigen binding (ortholog); polysaccharide binding (ortholog); T cell receptor binding (ortholog); INVOLVED IN antigen processing and presentation of endogenous peptide antigen via MHC class II (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); antigen processing and presentation of peptide or polysaccharide antigen via MHC class II (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; ASSOCIATED WITH allergic disease (ortholog); asthma (ortholog); Asthma and Nasal Polyps (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); immunological synapse (ortholog) NW_004955437 1109735 1114742 + 102019320 AGCD01034190;GBBH01030587;XM_005389449 XP_005389506 MODEL 8897463 protein-coding Llgl1 LLGL scribble cell polarity complex component 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); protein kinase binding (ortholog); small GTPase binding (ortholog); INVOLVED IN axonogenesis (ortholog); cortical actin cytoskeleton organization (ortholog); Golgi to plasma membrane transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); Breast Neoplasms (ortholog); FOUND IN axon (ortholog); basolateral plasma membrane (ortholog); cortical actin cytoskeleton (ortholog) NW_004955478 11075399 11089818 - 102021006 AGCD01056158;AGCD01056159;GBBH01126920;GBDJ01224920;XM_005402281 XP_005402338 MODEL 8958004 pseudo LOC102013293 60S ribosomal protein L12-like NW_004955418 2871913 2872420 + 102013293 AGCD01018776 MODEL 9048694 protein-coding St3gal1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 ENCODES a protein that exhibits beta-galactoside (CMP) alpha-2,3-sialyltransferase activity (ortholog); INVOLVED IN ganglioside biosynthetic process via lactosylceramide (ortholog); memory B cell differentiation (ortholog); N-acetylneuraminate metabolic process (ortholog); ASSOCIATED WITH Enterovirus Infections (ortholog); FOUND IN Golgi medial cisterna membrane (ortholog); Golgi trans cisterna membrane (ortholog); trans-Golgi network membrane (ortholog) NW_004955461 7960901 8036221 - 102016454 AGCD01048925;GBCB01003604;XM_005398028;XM_013521328;XM_013521329;XM_013521330 XP_005398085;XP_013376782;XP_013376783;XP_013376784 MODEL 8855712 protein-coding Slc7a2 solute carrier family 7 member 2 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); L-amino acid transmembrane transporter activity (ortholog); L-arginine transmembrane transporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); establishment of localization in cell (ortholog); L-alpha-amino acid transmembrane transport (ortholog); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; glutaric aciduria type I pathway; hyperlysinemia pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); hereditary spastic paraplegia 53 (ortholog); myoepithelioma (ortholog); FOUND IN cell junction (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955552 2117972 2141144 - 102023960 AGCD01072802;GBCB01039132;GBDK01322143;XM_013508606 XP_013364060 MODEL 8893947 protein-coding Rbm15b RNA binding motif protein 15B ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN dosage compensation by inactivation of X chromosome (ortholog); mRNA export from nucleus (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN nuclear envelope (ortholog); nuclear speck (ortholog); nucleolus (ortholog) NW_004955532 3080207 3082312 + 102017499 AGCD01070267;GBBH01230101;XM_005410316 XP_005410373 MODEL 9014572 protein-coding Rag2 recombination activating 2 ENCODES a protein that exhibits chromatin binding (ortholog); methylated histone binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN B cell differentiation (ortholog); B cell homeostatic proliferation (ortholog); B cell lineage commitment (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH adenosine deaminase deficiency (ortholog); combined cellular and humoral immune defects with granulomas (ortholog); common variable immunodeficiency (ortholog) NW_004955422 9867307 9869732 + 102003558 AGCD01022723;AY303201;GBDF01207383;XM_005384100 AAQ76995;XP_005384157 MODEL 8702337 protein-coding Pgp phosphoglycolate phosphatase ENCODES a protein that exhibits ADP phosphatase activity (ortholog); glycerol-3-phosphatase activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN glycerol biosynthetic process (ortholog); glycerophospholipid metabolic process (ortholog); negative regulation of gluconeogenesis (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); developmental and epileptic encephalopathy 1 (ortholog); endometrial carcinoma (ortholog) NW_004955442 15051149 15053123 + 102011702 AGCD01037855;AGCD01037856;GBBH01186797;GBDF01006244;XM_013517733 XP_013373187 MODEL 9010883 protein-coding Tspyl5 TSPY like 5 INVOLVED IN cellular response to gamma radiation (ortholog); positive regulation of cell population proliferation (ortholog); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog) NW_004955417 13133655 13136768 - 102008102 AGCD01018171;XM_005381841 XP_005381898 MODEL 39132451 snrna U6 U6 spliceosomal RNA 8827192 protein-coding Trem2 triggering receptor expressed on myeloid cells 2 ENCODES a protein that exhibits amyloid-beta binding (ortholog); apolipoprotein A-I binding (ortholog); apolipoprotein binding (ortholog); INVOLVED IN amyloid-beta clearance (ortholog); amyloid-beta clearance by cellular catabolic process (ortholog); apoptotic cell clearance (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Alzheimer's disease 17 (ortholog); dementia (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog); plasma membrane raft (ortholog) NW_004955437 7780886 7785597 - 102009649 AGCD01034467;GBCE01052348;XM_005389679 XP_005389736 MODEL 8958547 protein-coding LOC102013296 olfactory receptor 14A2-like NW_004955418 30355010 30355939 - 102013296 AGCD01019514;XM_005382373 XP_005382430 MODEL 8841448 protein-coding Ptgfr prostaglandin F receptor ENCODES a protein that exhibits prostaglandin F receptor activity (ortholog); INVOLVED IN cellular response to prostaglandin D stimulus (ortholog); negative regulation of apoptotic process (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH Airway Obstruction (ortholog); endometriosis (ortholog); myoepithelioma (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955423 14768208 14816462 - 102010499 AGCD01023777;AGCD01023778;AGCD01023779;GBCQ01179014;XM_005385183;XM_013514554;XM_013514555 XP_005385240;XP_013370008;XP_013370009 MODEL 8804625 protein-coding Sim1 SIM bHLH transcription factor 1 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); INVOLVED IN regulation of DNA-templated transcription (ortholog); ureteric bud development (ortholog); ASSOCIATED WITH brachydactyly (ortholog); Breast Neoplasms (ortholog); diabetes mellitus (ortholog); FOUND IN nucleus (ortholog) NW_004955411 26173009 26256545 - 102025885 AGCD01012174;AGCD01012175;GBDK01307262;XM_005377811 XP_005377868 MODEL 8877859 pseudo LOC102008588 tetratricopeptide repeat protein 14 pseudogene NW_004955402 62282155 62283653 - 102008588 AGCD01001640 MODEL 8714527 ncrna LOC102007111 uncharacterized LOC102007111 NW_004955415 1538810 1543595 + 102007111 AGCD01015868;GBDF01258856;XR_260258 MODEL 39132453 snrna U6 U6 spliceosomal RNA 9023522 protein-coding Pgpep1 pyroglutamyl-peptidase I ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN protein catabolic process (ortholog); ASSOCIATED WITH Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); prostate cancer (ortholog) NW_004955524 3138393 3148321 - 102010515 AGCD01068859;GBDF01083374;GBDK01021696;XM_013507332 XP_013362786 MODEL 8953998 protein-coding LOC102023511 lipocalin-1-like NW_004955513 2617713 2622926 - 102023511 AGCD01066883;GBBH01106908;XM_013506592 XP_013362046 MODEL 8929960 protein-coding LOC102009002 KN motif and ankyrin repeat domain-containing protein 2-like NW_004955774 14744 24159 - 102009002 AGCD01078322;AGCD01078323;AGCD01078324;GBCQ01009072;GBDJ01022892;XM_013510190 XP_013365644 MODEL 10359240 protein-coding Pagr1 PAXIP1 associated glutamate rich protein 1 ENCODES a protein that exhibits nuclear estrogen receptor binding (ortholog); INVOLVED IN chorion development (ortholog); DNA damage response (ortholog); positive regulation of cell cycle G1/S phase transition (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN histone methyltransferase complex (ortholog); MLL3/4 complex (ortholog); nucleus (ortholog) NW_004955493 7142048 7144836 - 106146246 AGCD01061156;GBDK01010121;XM_005405243 XP_005405300 MODEL 8839115 protein-coding Smpd1 sphingomyelin phosphodiesterase 1 ENCODES a protein that exhibits acid sphingomyelin phosphodiesterase activity (ortholog); sphingomyelin phosphodiesterase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); cellular response to UV (ortholog); ceramide biosynthetic process (ortholog); PARTICIPATES IN ceramide signaling pathway; FasL mediated signaling pathway; Trail mediated signaling pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); Gaucher's disease (ortholog); genetic disease (ortholog); FOUND IN endolysosome (ortholog); endosome (ortholog); extracellular space (ortholog) NW_004955414 22117929 22121744 + 102019263 AGCD01015443;GBDF01251766;XM_005380132;XM_005380133;XM_005380134 XP_005380189;XP_005380190;XP_005380191 MODEL 8911053 ncrna LOC102003836 uncharacterized LOC102003836 NW_004955407 41449979 41453452 + 102003836 AGCD01007866;XR_259639 MODEL 8887229 ncrna LOC102019322 uncharacterized LOC102019322 NW_004955539 512748 523203 + 102019322 AGCD01071185;GBDF01010156;XR_264813 MODEL 10195694 ncrna LOC106146832 uncharacterized LOC106146832 NW_004955497 3455501 3457442 - 106146832 AGCD01062541;GBDF01207264;XR_001231433 MODEL 8936649 protein-coding Pip4p1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 ENCODES a protein that exhibits phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity (ortholog); INVOLVED IN cholesterol metabolic process (ortholog); lysosome localization (ortholog); phosphatidylinositol dephosphorylation (ortholog); ASSOCIATED WITH purine nucleoside phosphorylase deficiency (ortholog); FOUND IN late endosome membrane (ortholog); lysosomal membrane (ortholog); phagocytic vesicle membrane (ortholog) NW_004955550 1275921 1279262 - 102025625 AGCD01072559;GBCE01055444;XM_005412063 XP_005412120 MODEL 8980956 protein-coding Ndufb6 NADH:ubiquinone oxidoreductase subunit B6 INVOLVED IN mitochondrial ATP synthesis coupled electron transport (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955472 3054026 3064530 + 102014446 AGCD01053499;AGCD01053500;GBBH01004455;GBCQ01007644;XM_013523044 XP_013378498 MODEL 9009914 protein-coding Prr36 proline rich 36 NW_004955563 1377887 1383597 + 102020851 AGCD01074144;AGCD01074145;GBBH01205771;XM_005413148 XP_005413205 MODEL 39133523 snrna U4 U4 spliceosomal RNA 9001794 protein-coding Bcl9l BCL9 like ENCODES a protein that exhibits beta-catenin binding (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); myoblast differentiation (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN beta-catenin-TCF complex (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955412 20029988 20059057 - 102018906 AGCD01012992;GBDI01119157;XM_005378276;XM_005378277;XM_005378278;XM_005378280;XM_005378281;XM_013511109;XM_013511110 XP_005378333;XP_005378334;XP_005378335;XP_005378337;XP_005378338;XP_013366563;XP_013366564 MODEL 8830541 ncrna LOC102005676 uncharacterized LOC102005676 NW_004955460 10833953 10838057 + 102005676 AGCD01048618;AGCD01048619;GBDI01033534;XR_263054 MODEL 8727192 protein-coding Ppil3 peptidylprolyl isomerase like 3 PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Pulmonary Arterial Hypertension (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog) NW_004955403 640956 648498 + 102029462 AGCD01001700;GBCQ01038792;XM_005373232;XM_005373233;XM_005373234;XM_005373235 XP_005373289;XP_005373290;XP_005373291;XP_005373292 MODEL 8758420 pseudo LOC102018835 transcription elongation factor B polypeptide 2-like NW_004955487 5499289 5500133 - 102018835 AGCD01059338 MODEL 8935934 protein-coding Ndufb7 NADH:ubiquinone oxidoreductase subunit B7 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); ASSOCIATED WITH depressive disorder (ortholog); mitochondrial metabolism disease (ortholog); Nuclear Type Mitochondrial Complex I Deficiency 39 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955415 33138888 33142663 - 102018088 AGCD01016752;GBDI01373385;XM_005381108 XP_005381165 MODEL 8704332 pseudo LOC102009750 H-2 class II histocompatibility antigen, E-S beta chain pseudogene NW_004955433 10616032 10617329 + 102009750 AGCD01031633 MODEL 8917357 protein-coding Ptgfrn prostaglandin F2 receptor inhibitor INVOLVED IN lipid droplet organization (ortholog); myoblast fusion involved in skeletal muscle regeneration (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955435 20046712 20092051 + 102004001 AGCD01033445;GBDJ01272892;XM_005389111 XP_005389168 MODEL 8767826 protein-coding Spag1 sperm associated antigen 1 ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); Cohen syndrome (ortholog); genetic disease (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955417 15417604 15482650 + 102017235 AGCD01018232;AGCD01018233;AGCD01018234;GBBH01219310;GBCE01023932;XM_013512759;XM_013512760 XP_013368213;XP_013368214 MODEL 8717841 gene LOC102010841 Ig lambda-2 chain C regions-like NW_004955442 17155684 17169023 - 102010841 AGCD01037943;AGCD01037944;XM_005391686;XM_005391687 MODEL 8726752 protein-coding Ppil4 peptidylprolyl isomerase like 4 FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955439 11705096 11745478 + 102012687 AGCD01035919;AGCD01035920;AGCD01035921;AGCD01035922;GBDF01189460;XM_005390608 XP_005390665 MODEL 8755527 pseudo LOC102009751 pre-mRNA-splicing factor RBM22 pseudogene NW_004955434 8957904 8962702 + 102009751 AGCD01032281;AGCD01032282 MODEL 8893173 protein-coding Epcam epithelial cell adhesion molecule ENCODES a protein that exhibits cadherin binding involved in cell-cell adhesion (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell-cell adhesion via plasma-membrane adhesion molecules (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of cell-cell adhesion mediated by cadherin (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); Breast Cancer, Familial (ortholog); carcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); bicellular tight junction (ortholog) NW_004955441 14155084 14167584 + 102018032 AGCD01037179;AGCD01037180;AGCD01037181;AGCD01037182;GBCE01007173;GBCQ01011851;XM_013517611 XP_013373065 MODEL 8703767 protein-coding LOC102010843 kallikrein-2-like NW_004955559 416199 433647 - 102010843 AGCD01073584;AGCD01073585;AGCD01073586;GBDJ01062263;GBDJ01062266;XM_005412758 XP_005412815 MODEL 8980648 protein-coding Pold3 DNA polymerase delta 3, accessory subunit ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN DNA biosynthetic process (ortholog); DNA-templated DNA replication (ortholog); error-prone translesion synthesis (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); Colorectal Neoplasms (ortholog); immunodeficiency 122 (ortholog); FOUND IN delta DNA polymerase complex (ortholog); nucleoplasm (ortholog); zeta DNA polymerase complex (ortholog) NW_004955414 17064379 17111946 - 102006120 AGCD01015233;AGCD01015234;GBDF01128109;XM_005379914;XM_005379915 XP_005379971;XP_005379972 MODEL 9050974 protein-coding Pah phenylalanine hydroxylase ENCODES a protein that exhibits amino acid binding (ortholog); identical protein binding (ortholog); iron ion binding (ortholog); INVOLVED IN L-phenylalanine metabolic process (ortholog); protein hydroxylation (ortholog); tyrosine biosynthetic process (ortholog); PARTICIPATES IN phenylketonuria pathway; tyrosinemia type II pathway; tyrosinemia type III pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); breast cancer (ortholog) NW_004955405 37848486 37909163 - 102005992 AGCD01005461;AGCD01005462;GBCQ01001898;XM_005374572 XP_005374629 MODEL 8891028 protein-coding Slc7a3 solute carrier family 7 member 3 ENCODES a protein that exhibits basic amino acid transmembrane transporter activity (ortholog); L-arginine transmembrane transporter activity (ortholog); L-lysine transmembrane transporter activity (ortholog); INVOLVED IN L-arginine import across plasma membrane (ortholog); L-arginine transmembrane transport (ortholog); L-lysine import across plasma membrane (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN plasma membrane (ortholog) NW_004955475 10457859 10463828 - 102026632 AGCD01055096;GBDJ01316302;XM_005401634 XP_005401691 MODEL 8834064 protein-coding Tlx2 T cell leukemia homeobox 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN enteric nervous system development (ortholog); mesoderm formation (ortholog); negative regulation of dendrite morphogenesis (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); intestinal pseudo-obstruction (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955424 11269426 11275200 - 102021364 AGCD01024559;AGCD01024560;GBDF01120108;XM_005385483 XP_005385540 MODEL 8915414 ncrna LOC102010844 uncharacterized LOC102010844 NW_004955443 5803759 5817261 + 102010844 AGCD01038244;GBBH01211346;XR_262178 MODEL 8872349 protein-coding Sox21 SRY-box transcription factor 21 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN hair cycle (ortholog); hair follicle development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly 5 (ortholog) NW_004955404 15181866 15184317 + 102020079 AGCD01003535;AGCD01003536;GBBH01186966;XM_005374233 XP_005374290 MODEL 8974066 ncrna LOC102013298 uncharacterized LOC102013298 NW_004955485 7764867 7771120 - 102013298 AGCD01058675;GBBH01203416;XR_001231069;XR_001231070;XR_001231071;XR_001231072;XR_001231073 MODEL 39133524 snrna U4 U4 spliceosomal RNA 8871207 protein-coding LOC102009752 glutathione S-transferase Mu 2 NW_004955435 13200085 13206236 + 102009752 AGCD01033197;GBCQ01122645;XM_013516459;XM_013516460 XP_013371913;XP_013371914 MODEL 8804203 ncrna LOC102015086 uncharacterized LOC102015086 NW_004955461 7750257 7757384 - 102015086 AGCD01048922;GBDF01276556;XR_001236574 MODEL 39132454 snrna U6 U6 spliceosomal RNA 8766488 protein-coding Sim2 SIM bHLH transcription factor 2 ENCODES a protein that exhibits DNA binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN embryonic pattern specification (ortholog); lung development (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); cleft palate (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 35828250 35869067 + 102018159 AGCD01007752;AGCD01007753;GBCE01094132;GBCQ01175819;XM_013504633 XP_013360087 MODEL 8877072 protein-coding LOC102008186 gamma-crystallin B NW_004955457 6977737 6979696 + 102008186 AGCD01046862;XM_005396970 XP_005397027 MODEL 39133525 snrna U4 U4 spliceosomal RNA 8983068 protein-coding Pdx1 pancreatic and duodenal homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); cell differentiation (ortholog); cell population proliferation (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); cerebral infarction (ortholog); diabetes mellitus (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955497 7281886 7307969 + 102016397 AGCD01062664;AGCD01062665;XM_013505455 XP_013360909 MODEL 8722047 protein-coding Tlx3 T cell leukemia homeobox 3 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN central nervous system development (ortholog); GABAergic neuron differentiation (ortholog); negative regulation of neuron differentiation (ortholog); ASSOCIATED WITH congenital central hypoventilation syndrome (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955408 24103123 24105292 + 102020767 AGCD01008594;XM_005376328 XP_005376385 MODEL 8816288 protein-coding Llgl2 LLGL scribble cell polarity complex component 2 ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN branching involved in labyrinthine layer morphogenesis (ortholog); establishment or maintenance of polarity of embryonic epithelium (ortholog); L-leucine transport (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); COVID-19 (ortholog); Neoplasm Metastasis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955553 2377640 2415152 + 102030244 AGCD01072935;GBDJ01082430;XM_005412308;XM_013508660;XM_013508661;XM_013508662 XP_005412365;XP_013364114;XP_013364115;XP_013364116 MODEL 9044218 protein-coding St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 ENCODES a protein that exhibits beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3- sialyltransferase (ortholog); beta-galactoside (CMP) alpha-2,3-sialyltransferase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN ganglioside biosynthetic process via lactosylceramide (ortholog); globoside biosynthetic process via lactosylceramide (ortholog); glycolipid biosynthetic process (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955484 3176214 3230433 - 102003137 AGCD01058158;AGCD01058159;AGCD01058160;AGCD01058161;AGCD01058162;AGCD01058163;GBBH01163789;GBDJ01188327;XM_005403478 XP_005403535 MODEL 8731185 protein-coding Sftpb surfactant protein B INVOLVED IN cellular response to mechanical stimulus (ortholog); cellular response to nitric oxide (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); adult respiratory distress syndrome (ortholog); asthma (ortholog); FOUND IN alveolar lamellar body (ortholog); cytoplasm (ortholog); extracellular space (ortholog) NW_004955424 1849313 1858087 + 102025136 AGCD01024248;GBDK01014342;XM_005385414;XM_005385415;XM_005385416;XM_005385417 XP_005385471;XP_005385472;XP_005385473;XP_005385474 MODEL 10325914 ncrna LOC106146833 uncharacterized LOC106146833 NW_004955497 3489444 3500439 - 106146833 AGCD01062542;GBDF01207265;XR_001231434 MODEL 8928099 protein-coding Epcip exosomal polycystin 1 interacting protein ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mitocytosis (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); Familial Platelet Disorder with Associated Myeloid Malignancy (ortholog); FOUND IN extracellular exosome (ortholog); migrasome (ortholog) NW_004955407 32229108 32249097 - 102017952 AGCD01007671;GBDJ01114206;XM_005375674 XP_005375731 MODEL 8993443 protein-coding Treml1 triggering receptor expressed on myeloid cells like 1 INVOLVED IN calcium-mediated signaling (ortholog); platelet activation (ortholog); ASSOCIATED WITH juvenile rheumatoid arthritis (ortholog); FOUND IN cell surface (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955437 7773279 7778197 - 102009104 AGCD01034467;GBDI01367631;XM_005389677;XM_005389678 XP_005389734;XP_005389735 MODEL 8853293 protein-coding Qki QKI, KH domain containing RNA binding ENCODES a protein that exhibits internal N(7)-methylguanine-containing RNA reader activity (ortholog); miRNA binding (ortholog); mRNA 3'-UTR binding (ortholog); INVOLVED IN axon ensheathment (ortholog); intracellular mRNA localization (ortholog); long-chain fatty acid biosynthetic process (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH demyelinating disease (ortholog); Experimental Autoimmune Encephalomyelitis (ortholog); high grade glioma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955439 17925205 18079727 - 102005844 AGCD01036045;AGCD01036046;AGCD01036047;AGCD01036048;AGCD01036049;GBDJ01179084;XM_013517307 XP_013372761 MODEL 9063415 protein-coding Prr5 proline rich 5 INVOLVED IN phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); positive regulation of protein phosphorylation (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); FOUND IN TORC2 complex (ortholog) NW_004955413 29360125 29379196 + 102024888 AGCD01014583;GBCQ01003901;GBCQ01003904;XM_013511543 XP_013366997 MODEL 8766597 ncrna LOC102023872 uncharacterized LOC102023872 NW_004955454 8131739 8161226 + 102023872 AGCD01045319;GBDF01221444;XR_001236208;XR_001236209;XR_001236210 MODEL 9020649 ncrna LOC102007113 uncharacterized LOC102007113 NW_004955415 15209941 15253124 + 102007113 AGCD01016333;AGCD01016334;AGCD01016335;GBDK01120163;XR_001233186 MODEL 8844673 protein-coding LOC102006008 cysteine-rich secretory protein 2 NW_004955411 8242364 8257545 + 102006008 AGCD01011720;GBDF01010088;XM_005377669;XM_005377670;XM_005377671;XM_013510701;XM_013510702 XP_005377726;XP_005377727;XP_005377728;XP_013366155;XP_013366156 MODEL 8976262 protein-coding Plekha8 pleckstrin homology domain containing A8 ENCODES a protein that exhibits ceramide binding (ortholog); glycolipid binding (ortholog); glycolipid transfer activity (ortholog); INVOLVED IN ER to Golgi ceramide transport (ortholog); lipid transport (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); Ehlers-Danlos syndrome kyphoscoliotic type 2 (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN Golgi apparatus (ortholog); nucleoplasm (ortholog); trans-Golgi network (ortholog) NW_004955410 31327015 31386671 + 102017751 AGCD01011321;AGCD01011322;AGCD01011323;GBDF01087012;XM_005377490;XM_013510617 XP_005377547;XP_013366071 MODEL 8809712 protein-coding Sfmbt2 Scm like with four mbt domains 2 ENCODES a protein that exhibits histone binding (ortholog); INVOLVED IN negative regulation of gene expression (ortholog); ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); FOUND IN aggresome (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955421 23691648 23913781 - 102006670 AGCD01022193;AGCD01022194;AGCD01022195;AGCD01022196;AGCD01022197;AGCD01022198;AGCD01022199;GBDI01384258;XM_005383870;XM_005383871;XM_013513767;XM_013513768;XM_013513769;XM_013513771;XM_013513772;XM_013513773 XP_005383927;XP_005383928;XP_013369221;XP_013369222;XP_013369223;XP_013369225;XP_013369226;XP_013369227 MODEL 8820774 protein-coding Slc35a1 solute carrier family 35 member A1 ENCODES a protein that exhibits antiporter activity (ortholog); CMP-N-acetylneuraminate transmembrane transporter activity (ortholog); INVOLVED IN CMP-N-acetylneuraminate biosynthetic process (ortholog); CMP-N-acetylneuraminate transmembrane transport (ortholog); N-acetylneuraminate metabolic process (ortholog); ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIf (ortholog); genetic disease (ortholog); FOUND IN Golgi membrane (ortholog); membrane (ortholog) NW_004955411 14443957 14469590 + 102027388 AGCD01011918;AGCD01011919;AGCD01011920;GBDF01017200;XM_005377728;XM_005377729;XM_013510792 XP_005377785;XP_005377786;XP_013366246 MODEL 8960211 protein-coding Sox3 SRY-box transcription factor 3 ENCODES a protein that exhibits DNA binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); face development (ortholog); forebrain development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955489 4817753 4819858 + 102021981 AGCD01059916;AGCD01059917;GBDJ01389993;XM_013504464 XP_013359918 MODEL 9001508 pseudo LOC102009753 ADP-ribosylation factor-like protein 15 pseudogene NW_004955436 1336836 1341038 - 102009753 AGCD01033575 MODEL 8715598 pseudo LOC102015088 eukaryotic translation initiation factor 5 pseudogene NW_004955411 11502058 11504279 + 102015088 AGCD01011822 MODEL 39132456 snrna U6 U6 spliceosomal RNA 8726546 protein-coding Rbm17 RNA binding motif protein 17 INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); schizophrenia (ortholog); Spinocerebellar Ataxias (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955421 22732757 22745926 + 102030537 AGCD01022147;AGCD01022148;GBDF01086381;XM_005383861 XP_005383918 MODEL 9068137 protein-coding Rfesd Rieske Fe-S domain containing ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955418 16897714 16900324 - 102015723 AGCD01019133;GBBH01113392;GBCB01057071;XM_013513067 XP_013368521 MODEL 8842406 protein-coding Tsr1 TSR1 ribosome maturation factor ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); primary microcephaly (ortholog) NW_004955481 907441 919613 + 102010367 AGCD01056816;GBDF01127365;XM_005402590 XP_005402647 MODEL 10238320 ncrna LOC106149936 uncharacterized LOC106149936 NW_004955458 13881726 13893278 + 106149936 AGCD01047815;GBDF01247795;XR_001236433;XR_001236434 MODEL 8774091 protein-coding Sox30 SRY-box transcription factor 30 ENCODES a protein that exhibits beta-catenin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); negative regulation of Wnt signaling pathway (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Liver Metastasis (ortholog); lung adenocarcinoma (ortholog); FOUND IN chromocenter (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955408 11790145 11830426 - 102016785 AGCD01008318;AGCD01008319;GBDF01000048;XM_005376239;XM_013508812 XP_005376296;XP_013364266 MODEL 8856369 protein-coding Pold4 DNA polymerase delta 4, accessory subunit INVOLVED IN DNA-templated DNA replication (ortholog); positive regulation of endothelial cell proliferation (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); immunodeficiency 90 (ortholog); intellectual disability (ortholog); FOUND IN delta DNA polymerase complex (ortholog); nucleus (ortholog) NW_004955422 18116604 18118280 + 102020020 AGCD01022937;GBDJ01139891;XM_005384335;XM_005384336 XP_005384392;XP_005384393 MODEL 8718319 protein-coding St3gal3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 ENCODES a protein that exhibits beta-galactoside (CMP) alpha-2,3-sialyltransferase activity (ortholog); INVOLVED IN ganglioside biosynthetic process via lactosylceramide (ortholog); protein glycosylation (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 12 (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog) NW_004955537 3258076 3458742 + 102005081 AGCD01070953;AGCD01070954;AGCD01070955;AGCD01070956;AGCD01070957;AGCD01070958;AGCD01070959;GBBH01076952;XM_005410678;XM_005410679 XP_005410735;XP_005410736 MODEL 8752224 ncrna LOC102005678 uncharacterized LOC102005678 NW_004955461 3800451 3869319 - 102005678 AGCD01048855;GBDF01224739;XR_001236555;XR_263076;XR_263077 MODEL 8847647 protein-coding Bclaf1 BCL2 associated transcription factor 1 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); DNA damage response (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Epidermolysis Bullosa Simplex 5D with Nail Dystrophy (ortholog); Familial Behcet-Like Autoinflammatory Syndrome (ortholog); Fraser syndrome 3 (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955439 608849 641005 + 102023745 AGCD01035590;AGCD01035591;GBDF01118482;XM_005390473;XM_005390474;XM_005390475;XM_005390476;XM_005390477;XM_005390478;XM_005390479;XM_013517364;XM_013517365 XP_005390530;XP_005390531;XP_005390532;XP_005390533;XP_005390534;XP_005390535;XP_005390536;XP_013372818;XP_013372819 MODEL 9036362 pseudo LOC102023513 intraflagellar transport protein 52 homolog pseudogene NW_004955432 3741438 3742765 + 102023513 AGCD01030676 MODEL 8926808 ncrna LOC102013303 uncharacterized LOC102013303 NW_004955421 26314686 26333180 - 102013303 AGCD01022259;AGCD01022260;GBDF01281827;XR_001233836;XR_001233837;XR_260829 MODEL 8825130 protein-coding Epdr1 ependymin related 1 ENCODES a protein that exhibits ganglioside GM1 binding (ortholog); identical protein binding (ortholog); phospholipid binding (ortholog); INVOLVED IN myofibroblast contraction (ortholog); ASSOCIATED WITH angle-closure glaucoma (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN extracellular region (ortholog); lysosome (ortholog) NW_004955460 5612589 5650222 - 102025881 AGCD01048455;AGCD01048456;GBDJ01134723;XM_005397745;XM_005397746 XP_005397802;XP_005397803 MODEL 8810394 ncrna LOC102007114 uncharacterized LOC102007114 NW_004955476 1399542 1400885 - 102007114 AGCD01055205;GBDF01224897;XR_001230779 MODEL 8964373 protein-coding LOC102023873 uncharacterized LOC102023873 NW_004955454 2526267 2531589 - 102023873 AGCD01045022;GBDF01241248;XM_013520106;XM_013520107 XP_013375560;XP_013375561 MODEL 8769138 protein-coding Sytl2 synaptotagmin like 2 ENCODES a protein that exhibits neurexin family protein binding (ortholog); phosphatase binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN exocytosis (ortholog); positive regulation of mucus secretion (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH angioedema (ortholog); COVID-19 (ortholog); exudative vitreoretinopathy 1 (ortholog); FOUND IN cytoplasm (ortholog); exocytic vesicle (ortholog); melanosome (ortholog) NW_004955414 7104239 7172791 + 102018280 AGCD01014947;AGCD01014948;GBCQ01034102;XM_005379769;XM_005379771;XM_005379773;XM_005379774;XM_005379775;XM_005379776;XM_005379777;XM_013511851;XM_013511852 XP_005379826;XP_005379828;XP_005379830;XP_005379831;XP_005379832;XP_005379833;XP_005379834;XP_013367305;XP_013367306 MODEL 9026225 protein-coding Smpd2 sphingomyelin phosphodiesterase 2 ENCODES a protein that exhibits phosphoric diester hydrolase activity (ortholog); sphingomyelin phosphodiesterase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); ceramide metabolic process (ortholog); intracellular signal transduction (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); FOUND IN caveola (ortholog); plasma membrane (ortholog) NW_004955411 34481431 34484423 + 102019678 AGCD01012401;AGCD01012402;GBCE01076449;GBDF01046449;XM_005377875 XP_005377932 MODEL 8735215 protein-coding LOC102019324 tubulin beta-3 chain NW_004955541 3390452 3401774 + 102019324 AGCD01071442;AGCD01071443;GBBH01225915;XM_005411071 XP_005411128 MODEL 8816627 protein-coding Tm2d1 TM2 domain containing 1 ENCODES a protein that exhibits amyloid-beta binding (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); ASSOCIATED WITH congenital disorder of glycosylation It (ortholog); intellectual disability (ortholog); FOUND IN plasma membrane (ortholog) NW_004955423 27639192 27669907 + 102013517 AGCD01024136;GBCB01002952;XM_013514531 XP_013369985 MODEL 8956722 protein-coding Ppil6 peptidylprolyl isomerase like 6 ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog) NW_004955411 34449508 34481370 - 102018067 AGCD01012401;GBDI01024216;XM_005377868;XM_005377869;XM_005377870;XM_005377871;XM_005377872;XM_005377873;XM_005377874;XM_013510822;XM_013510823 XP_005377925;XP_005377926;XP_005377927;XP_005377928;XP_005377929;XP_005377930;XP_005377931;XP_013366276;XP_013366277 MODEL 8724293 protein-coding Sfn stratifin ENCODES a protein that exhibits identical protein binding (ortholog); phosphoprotein binding (ortholog); phosphoserine residue binding (ortholog); INVOLVED IN cAMP/PKA signal transduction (ortholog); establishment of skin barrier (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; mTOR signaling pathway; phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH endometrial carcinoma (ortholog); Esophageal Neoplasms (ortholog); esophagus squamous cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955452 6217519 6218481 + 102024419 AGCD01044097;GBDJ01006661;XM_005394883 XP_005394940 MODEL 8889608 protein-coding Rxrg retinoid X receptor gamma ENCODES a protein that exhibits molecular condensate scaffold activity (ortholog); nuclear receptor activity (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); heart development (ortholog); neuron differentiation (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); lung non-small cell carcinoma (ortholog); Myocardial Ischemia (ortholog) NW_004955462 11238963 11281905 + 102005681 AGCD01049388;AGCD01049389;GBDK01322855;XM_005398248;XM_013521352;XM_013521353 XP_005398305;XP_013376806;XP_013376807 MODEL 8826377 protein-coding Pgpep1l pyroglutamyl-peptidase I like ASSOCIATED WITH chromosome 15q26-qter deletion syndrome (ortholog) NW_004955416 26069466 26094419 + 102029621 AGCD01017594;GBCE01023023;XM_005381617;XM_013512514 XP_005381674;XP_013367968 MODEL 9066355 pseudo LOC102018836 60S ribosomal protein L9 pseudogene NW_004955421 9029923 9030616 + 102018836 AGCD01021830 MODEL 8820526 protein-coding Treml2 triggering receptor expressed on myeloid cells like 2 ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN T cell activation (ortholog); ASSOCIATED WITH infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN cell surface (ortholog) NW_004955437 7812005 7824344 - 102017382 AGCD01034469;GBDI01279546;XM_013517049;XM_013517050;XM_013517051 XP_013372503;XP_013372504;XP_013372505 MODEL 8740892 protein-coding LOC102009003 glutamate receptor ionotropic, NMDA 2C NW_004956136 343 7674 - 102009003 AGCD01079116;GBCQ01125682;XM_005415170 XP_005415227 MODEL 8904930 pseudo LOC102003840 matrin-3 pseudogene NW_004955408 32750191 32754243 - 102003840 AGCD01008854 MODEL 8931069 protein-coding Rxylt1 ribitol xylosyltransferase 1 ENCODES a protein that exhibits ribitol beta-1,4-xylosyltransferase activity (ortholog); INVOLVED IN protein O-linked mannosylation (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A10 (ortholog); genetic disease (ortholog); mucopolysaccharidosis type IIID (ortholog); FOUND IN Golgi apparatus (ortholog); nucleoplasm (ortholog) NW_004955458 10649364 10674913 + 102007862 AGCD01047698;AGCD01047699;GBCQ01005457;GBDJ01181625;XM_013521008 XP_013376462 MODEL 8927081 ncrna LOC102023515 uncharacterized LOC102023515 NW_004955517 2388935 2391683 + 102023515 AGCD01067629;GBBH01024160;XR_264549 MODEL 9045398 protein-coding Spag16 sperm associated antigen 16 ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN axoneme assembly (ortholog); cerebrospinal fluid circulation (ortholog); cilium assembly (ortholog); ASSOCIATED WITH fetal akinesia deformation sequence syndrome 1 (ortholog); Neurodevelopmental Disorders (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN axonemal central apparatus (ortholog); axoneme (ortholog); sperm flagellum (ortholog) NW_004955457 1543946 2492686 - 102022257 AGCD01046727;AGCD01046728;AGCD01046729;AGCD01046730;AGCD01046731;AGCD01046732;AGCD01046733;AGCD01046734;AGCD01046735;AGCD01046736;AGCD01046737;AGCD01046738;AGCD01046739;AGCD01046740;AGCD01046741;AGCD01046742;AGCD01046743;AGCD01046744;AGCD01046745;GBDF01050344;XM_005396922;XM_005396923;XM_005396924;XM_005396927;XM_013520778;XM_013520779;XM_013520780;XM_013520781 XP_005396979;XP_005396980;XP_005396981;XP_005396984;XP_013376232;XP_013376233;XP_013376234;XP_013376235 MODEL 39133526 snrna U4 U4 spliceosomal RNA 9001166 protein-coding Rmdn3 regulator of microtubule dynamics 3 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN intracellular calcium ion homeostasis (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog); FOUND IN glutamatergic synapse (ortholog); intercellular bridge (ortholog); mitochondrial outer membrane (ortholog) NW_004955416 7591049 7610164 - 102025354 AGCD01016994;AGCD01016995;GBDI01223624;XM_005381256;XM_005381257 XP_005381313;XP_005381314 MODEL 8787920 protein-coding Rai1 retinoic acid induced 1 INVOLVED IN circadian regulation of gene expression (ortholog); negative regulation of multicellular organism growth (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH anxiety disorder (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955577 185404 296613 - 102015065 AGCD01075384;AGCD01075385;AGCD01075386;AGCD01075387;AGCD01075388;GBBH01207954;XM_005413962;XM_005413965;XM_005413966;XM_013509617;XM_013509618;XM_013509619;XR_265076 XP_005414019;XP_005414022;XP_005414023;XP_013365071;XP_013365072;XP_013365073 MODEL 8775747 pseudo LOC102013305 calcyclin-binding protein pseudogene NW_004955492 8003860 8004552 + 102013305 AGCD01060807 MODEL 8984425 pseudo LOC102007117 pre-mRNA-splicing factor 38A pseudogene NW_004955476 3480571 3481491 - 102007117 AGCD01055252 MODEL 9019223 trna Trnar-acg transfer RNA arginine (anticodon ACG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978835 AGCD01010511;AGCD01021398;AGCD01039089;AGCD01050591;AGCD01050597;AGCD01057606;AGCD01057629 MODEL 39132458 snrna U6 U6 spliceosomal RNA 39133527 snrna U4 U4 spliceosomal RNA 8865947 ncrna LOC102019329 uncharacterized LOC102019329 NW_004955441 8184704 8197646 + 102019329 AGCD01036977;AGCD01036978;GBDJ01402532;XR_262057 MODEL 9023420 protein-coding Paics phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase ENCODES a protein that exhibits identical protein binding (ortholog); phosphoribosylaminoimidazole carboxylase activity (ortholog); phosphoribosylaminoimidazolesuccinocarboxamide synthase activity (ortholog); INVOLVED IN 'de novo' AMP biosynthetic process (ortholog); 'de novo' IMP biosynthetic process (ortholog); 'de novo' XMP biosynthetic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH congenital disorder of glycosylation type IIk (ortholog); gastrointestinal stromal tumor (ortholog); PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE DEFICIENCY (ortholog); FOUND IN cytoplasm (ortholog) NW_004955447 14558468 14571081 - 102007482 AGCD01041014;AGCD01041015;GBDF01119964;GBDJ01005364;XM_013518500 XP_013373954 MODEL 10086772 ncrna LOC106146834 uncharacterized LOC106146834 NW_004955497 2598039 2612793 + 106146834 AGCD01062511;XR_001231435 MODEL 8721763 protein-coding LOC102008589 protein FAM170A-like NW_004955644 8842 16020 + 102008589 AGCD01077727;GBDF01075273;XM_005415048;XM_005415049 XP_005415105;XP_005415106 MODEL 8980809 protein-coding Smpd3 sphingomyelin phosphodiesterase 3 ENCODES a protein that exhibits identical protein binding (ortholog); neutral sphingomyelin phosphodiesterase activity (ortholog); phosphatidic acid binding (ortholog); INVOLVED IN artery smooth muscle contraction (ortholog); BMP signaling pathway (ortholog); bone development (ortholog); PARTICIPATES IN ceramide signaling pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi cis cisterna (ortholog); plasma membrane (ortholog) NW_004955484 8207686 8298164 + 102008416 AGCD01058372;AGCD01058373;AGCD01058374;GBCE01078867;XM_005403580;XM_013503919;XM_013503920 XP_005403637;XP_013359373;XP_013359374 MODEL 8703281 protein-coding Slc7a4 solute carrier family 7 member 4 ASSOCIATED WITH autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); chromosome 22q11.2 microduplication syndrome (ortholog) NW_004955442 19258901 19263317 + 102020617 AGCD01038045;GBDF01126826;XM_005391817;XM_005391818 XP_005391874;XP_005391875 MODEL 8856862 protein-coding LOC102010846 olfactory receptor 2W1-like NW_004955576 1239098 1240057 - 102010846 AGCD01075364;XM_005413951 XP_005414008 MODEL 8906302 protein-coding Wnk1 WNK lysine deficient protein kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); molecular condensate scaffold activity (ortholog); INVOLVED IN cell volume homeostasis (ortholog); cellular hyperosmotic response (ortholog); cellular response to calcium ion (ortholog); PARTICIPATES IN Erk5 MAPK signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); GABA-ergic synapse (ortholog) NW_004955454 6228492 6358690 - 102007507 AGCD01045225;AGCD01045226;AGCD01045227;AGCD01045228;AGCD01045229;AGCD01045230;GBDI01065217;XM_005395988;XM_005395991;XM_005395992;XM_005395993;XM_005395994;XM_005395996;XM_005395997;XM_005395999;XM_005396003;XM_013520148;XM_013520149;XM_013520150;XM_013520151;XM_013520152;XM_013520153;XM_013520155;XM_013520156;XM_013520157 XP_005396045;XP_005396048;XP_005396049;XP_005396050;XP_005396051;XP_005396053;XP_005396054;XP_005396056;XP_005396060;XP_013375602;XP_013375603;XP_013375604;XP_013375605;XP_013375606;XP_013375607;XP_013375609;XP_013375610;XP_013375611 MODEL 10366618 ncrna LOC106149937 uncharacterized LOC106149937 NW_004955458 6316072 6320403 + 106149937 AGCD01047557;GBBH01013693;XR_001236435;XR_001236436 MODEL 8793304 protein-coding LOC102017702 natural cytotoxicity triggering receptor 2 NW_004955437 7878039 7880780 + 102017702 AGCD01034470;XM_013516719 XP_013372173 MODEL 8927828 protein-coding Ptgir prostaglandin I2 receptor INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); negative regulation of platelet-derived growth factor receptor signaling pathway (ortholog); negative regulation of smooth muscle cell proliferation (ortholog); PARTICIPATES IN eicosanoid signaling pathway; prostaglandin I2 signaling pathway; ASSOCIATED WITH aspirin-induced respiratory disease (ortholog); heart disease (ortholog); long QT syndrome 1 (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955574 686156 690126 - 102028353 AGCD01075122;GBDK01305224;XM_005413837;XM_005413838;XM_013509573 XP_005413894;XP_005413895;XP_013365027 MODEL 9030070 ncrna LOC102018837 uncharacterized LOC102018837 NW_004955421 27841812 27860388 - 102018837 AGCD01022297;GBBH01162065;XR_001233833;XR_001233834 MODEL 8884648 protein-coding Simc1 SUMO interacting motifs containing 1 ENCODES a protein that exhibits peptidase inhibitor activity (ortholog); SUMO polymer binding (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Sotos syndrome (ortholog); FOUND IN cytoplasm (ortholog); PML body (ortholog); sarcomere (ortholog) NW_004955408 28562372 28630420 + 102009467 AGCD01008716;AGCD01008717;AGCD01008718;AGCD01008719;AGCD01008720;AGCD01008721;GBDF01002279;XM_005376371;XM_005376372 XP_005376428;XP_005376429 MODEL 9059192 protein-coding LOC102006012 C-type lectin domain family 10 member A NW_004955467 9788155 9791911 + 102006012 AGCD01051525;GBDK01397253;XM_005399570 XP_005399627 MODEL 9066198 ncrna LOC102009007 uncharacterized LOC102009007 NW_004955404 50480603 50488989 + 102009007 AGCD01004531;GBDF01057260;XR_259345 MODEL 9046474 pseudo LOC102003842 protein CASC4 pseudogene NW_004955459 21261 22548 - 102003842 AGCD01047923 MODEL 8940705 protein-coding LOC102009755 pre-mRNA-processing factor 6 NW_004955528 243869 278279 - 102009755 AGCD01069519;AGCD01069520;AGCD01069521;AGCD01069522;AGCD01069523;GBCQ01156965;XM_013507476;XM_013507477;XM_013507478;XM_013507479;XM_013507480;XM_013507481 XP_013362930;XP_013362931;XP_013362932;XP_013362933;XP_013362934;XP_013362935 MODEL 8842804 protein-coding Slc35a2 solute carrier family 35 member A2 ENCODES a protein that exhibits UDP-galactose transmembrane transporter activity (ortholog); INVOLVED IN UDP-galactose transmembrane transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIm (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955543 434265 443460 - 102027678 AGCD01071585;GBBH01185436;XM_005411289;XM_013508172;XM_013508173 XP_005411346;XP_013363626;XP_013363627 MODEL 8704678 protein-coding Llph LLP homolog, long-term synaptic facilitation factor ENCODES a protein that exhibits basal RNA polymerase II transcription machinery binding (ortholog); INVOLVED IN dendrite extension (ortholog); positive regulation of dendritic spine development (ortholog); ASSOCIATED WITH mucopolysaccharidosis type IIID (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog) NW_004955458 12785194 12791918 - 102023233 AGCD01047789;GBDF01120063;XM_005397449;XM_005397450;XM_005397451;XM_013520895 XP_005397506;XP_005397507;XP_005397508;XP_013376349 MODEL 8702184 protein-coding Sftpc surfactant protein C ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); cellular response to nitric oxide (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); asthma (ortholog); bacterial pneumonia (ortholog); FOUND IN alveolar lamellar body (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955403 45649149 45651421 + 102004547 AGCD01002825;GBDK01013470;XM_005373651;XM_005373652 XP_005373708;XP_005373709 MODEL 8768365 protein-coding Rbm18 RNA binding motif protein 18 FOUND IN cytosol (ortholog); intercellular bridge (ortholog); nucleoplasm (ortholog) NW_004955419 5800761 5822378 + 102009947 AGCD01019839;GBDF01122288;XM_005382536 XP_005382593 MODEL 9035824 protein-coding Tm2d2 TM2 domain containing 2 ASSOCIATED WITH hereditary spastic paraplegia 54 (ortholog); hypogonadotropic hypogonadism 2 with or without anosmia (ortholog); paraplegia (ortholog) NW_004955463 14537902 14545147 - 102028728 AGCD01049912;GBCC01027748;XM_005398462;XR_001236652 XP_005398519 MODEL 8750454 protein-coding Spag17 sperm associated antigen 17 INVOLVED IN axonemal central apparatus assembly (ortholog); epithelial cilium movement involved in extracellular fluid movement (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH cranioectodermal dysplasia 2 (ortholog); Idiopathic Short Stature, Autosomal (ortholog); Meniere's disease (ortholog); FOUND IN acrosomal vesicle (ortholog); axonemal central apparatus (ortholog); cytoplasm (ortholog) NW_004955435 21063005 21281997 - 102011581 AGCD01033468;AGCD01033469;AGCD01033470;AGCD01033471;AGCD01033472;AGCD01033473;AGCD01033474;GBDK01356416;XM_005389065;XM_013516482;XM_013516483;XM_013516484;XM_013516485;XM_013516486;XM_013516488;XR_001234871 XP_005389122;XP_013371936;XP_013371937;XP_013371938;XP_013371939;XP_013371940;XP_013371942 MODEL 10322056 protein-coding Sox4 SRY-box transcription factor 4 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN ascending aorta morphogenesis (ortholog); atrial septum primum morphogenesis (ortholog); cardiac right ventricle morphogenesis (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Asphyxia (ortholog); basal cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955483 5076664 5077059 - 106146545 AGCD01057752;GBDJ01023868;GBDJ01107737;XM_013503841 XP_013359295 MODEL 39133528 snrna U4 U4 spliceosomal RNA 9048878 protein-coding Sfpq splicing factor proline and glutamine rich ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); alternative mRNA splicing, via spliceosome (ortholog); chromatin remodeling (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN chromatin (ortholog); nuclear matrix (ortholog); nucleoplasm (ortholog) NW_004955452 13267968 13283823 - 102022877 AGCD01044397;AGCD01044398;GBBH01000997;GBCQ01037138;XM_005395311 XP_005395368 MODEL 9066134 ncrna LOC102005685 uncharacterized LOC102005685 NW_004955412 2045158 2062851 - 102005685 AGCD01012534;GBDF01262267;XR_259966 MODEL 8705741 protein-coding St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 ENCODES a protein that exhibits beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3- sialyltransferase (ortholog); beta-galactoside (CMP) alpha-2,3-sialyltransferase activity (ortholog); N-acetyllactosaminide alpha-2,3-sialyltransferase activity (ortholog); INVOLVED IN cognition (ortholog); glycolipid biosynthetic process (ortholog); glycoprotein biosynthetic process (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog) NW_004955412 27376270 27418770 + 102007098 AGCD01013236;AGCD01013237;AGCD01013238;GBBH01157473;XM_005378516;XM_005378517;XM_005378518;XM_005378519;XM_013511052;XM_013511053;XM_013511054 XP_005378573;XP_005378574;XP_005378575;XP_005378576;XP_013366506;XP_013366507;XP_013366508 MODEL 8789782 protein-coding LOC102008188 core histone macro-H2A.1 ENCODES a protein that exhibits ADP-D-ribose binding (ortholog); ADP-D-ribose modification-dependent protein binding (ortholog); chromatin binding (ortholog); INVOLVED IN DNA repair (ortholog); epigenetic regulation of gene expression (ortholog); establishment of protein localization to chromatin (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); myelodysplastic syndrome (ortholog); FOUND IN Barr body (ortholog); chromatin (ortholog); condensed chromosome (ortholog) NW_004955408 30497531 30550095 - 102008188 AGCD01008809;AGCD01008810;GBBH01000865;GBDK01090820;XM_005376471 XP_005376528 MODEL 8787312 protein-coding Slc7a5 solute carrier family 7 member 5 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); antiporter activity (ortholog); aromatic amino acid transmembrane transporter activity (ortholog); INVOLVED IN alanine transport (ortholog); amino acid import across plasma membrane (ortholog); cellular response to amino acid stimulus (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); adenoid cystic carcinoma (ortholog); allergic contact dermatitis (ortholog); FOUND IN amino acid transport complex (ortholog); apical plasma membrane (ortholog); basal plasma membrane (ortholog) NW_004955541 2103437 2129668 - 102024849 AGCD01071400;GBBH01118047;GBDF01126154;XM_013508008 XP_013363462 MODEL 8813104 protein-coding LOC102022800 lysine-rich coiled-coil protein 1-like NW_004955466 12652234 12652776 - 102022800 AGCD01051133;XM_013521888 XP_013377342 MODEL 8808089 protein-coding Wnk2 WNK lysine deficient protein kinase 2 INVOLVED IN monoatomic ion homeostasis (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); ASSOCIATED WITH genetic disease (ortholog); transient cerebral ischemia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955515 4730647 4852920 - 102010615 AGCD01067330;AGCD01067331;GBCB01002306;GBDK01219428;XM_013506886 XP_013362340 MODEL 8778667 ncrna LOC102023874 uncharacterized LOC102023874 NW_004955456 796593 798267 + 102023874 AGCD01046216;GBCQ01020310;XR_262867 MODEL 8829320 protein-coding Epg5 ectopic P-granules 5 autophagy tethering factor INVOLVED IN anatomical structure homeostasis (ortholog); apoptotic process (ortholog); autophagosome maturation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); cardiomyopathy (ortholog); chromosome 18q deletion syndrome (ortholog); FOUND IN lysosome (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955402 31422848 31532189 - 102025742 AGCD01000788;AGCD01000789;AGCD01000790;GBDF01280540;XM_005372862;XM_013510404 XP_005372919;XP_013365858 MODEL 8825057 protein-coding Sox5 SRY-box transcription factor 5 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN asymmetric neuroblast division (ortholog); cartilage condensation (ortholog); cartilage development (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); autism spectrum disorder (ortholog); Cerebral Visual Impairment and Intellectual Disability (ortholog); FOUND IN transcription regulator complex (ortholog) NW_004955413 18831931 19676371 - 102025340 AGCD01014193;AGCD01014194;AGCD01014195;AGCD01014196;AGCD01014197;AGCD01014198;AGCD01014199;AGCD01014200;AGCD01014201;GBDJ01347233;XM_005379082;XM_005379083;XM_005379084;XM_005379086;XM_005379087;XM_005379090;XM_005379093;XM_013511607;XM_013511608;XM_013511609 XP_005379139;XP_005379140;XP_005379141;XP_005379143;XP_005379144;XP_005379147;XP_005379150;XP_013367061;XP_013367062;XP_013367063 MODEL 9053040 protein-coding LOC102018844 neutrophil elastase ENCODES a protein that exhibits cytokine binding (ortholog); endopeptidase activity (ortholog); heparin binding (ortholog); INVOLVED IN acute inflammatory response to antigenic stimulus (ortholog); defense response to bacterium (ortholog); defense response to fungus (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); anthrax disease (ortholog); autosomal dominant severe congenital neutropenia (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular space (ortholog) NW_004955495 6964577 6967208 - 102018844 AGCD01062105;GBDF01239090;XM_005406018 XP_005406075 MODEL 8954285 pseudo LOC102006015 cysteine-rich PDZ-binding protein pseudogene NW_004955469 267316 267629 + 102006015 AGCD01052216;XR_263422 MODEL 8719140 pseudo LOC102007118 casein kinase I isoform alpha pseudogene NW_004955416 10129649 10130798 + 102007118 AGCD01017109 MODEL 8942995 ncrna LOC102012069 uncharacterized LOC102012069 NW_004955410 7679839 7699275 + 102012069 AGCD01010721;AGCD01010722;GBCE01185810;XR_259825 MODEL 8701549 pseudo LOC102003845 E3 ubiquitin-protein ligase XIAP pseudogene NW_004955462 10272846 10275300 + 102003845 AGCD01049360 MODEL 8752893 protein-coding Rffl ring finger and FYVE like domain containing E3 ubiquitin protein ligase ENCODES a protein that exhibits p53 binding (ortholog); protease binding (ortholog); protein kinase binding (ortholog); INVOLVED IN intracellular protein transport (ortholog); negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (ortholog); negative regulation of signal transduction by p53 class mediator (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH hypertension (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); endosome membrane (ortholog) NW_004955481 9718369 9788048 - 102008852 AGCD01057112;AGCD01057113;AGCD01057114;AGCD01057115;AGCD01057116;GBDF01089520;XM_005402854;XM_005402855;XM_005402858;XM_005402862 XP_005402911;XP_005402912;XP_005402915;XP_005402919 MODEL 8844691 protein-coding Qng1 Q-nucleotide N-glycosylase 1 INVOLVED IN nucleoside salvage (ortholog) NW_004955432 3273161 3284261 + 102006267 AGCD01030647;GBDF01126625;GBDF01126628;XM_013516079 XP_013371533 MODEL 39133035 snrna U6 U6 spliceosomal RNA 8860728 protein-coding LOC102008590 protocadherin gamma-B7-like NW_004957438 6 1466 - 102008590 AGCD01080834;GBCB01007960;XM_005415231 XP_005415288 MODEL 10092747 pseudo LOC106149938 nuclear receptor-binding factor 2-like NW_004955458 4313033 4317638 - 106149938 AGCD01047404;AGCD01047405 MODEL 8754794 ncrna LOC102005686 uncharacterized LOC102005686 NW_004955465 6940344 6948806 - 102005686 AGCD01050449;GBCB01122620;XR_263246 MODEL 8709430 ncrna LOC102017705 uncharacterized LOC102017705 NW_004955439 13711628 13716911 + 102017705 AGCD01035964;GBDF01041651;XR_261989 MODEL 9044789 ncrna LOC102023517 uncharacterized LOC102023517 NW_004955434 20459141 20481843 + 102023517 AGCD01032616;GBDF01086413;XR_261635 MODEL 8991305 protein-coding Sfr1 SWI5 dependent homologous recombination repair protein 1 ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN cellular response to estrogen stimulus (ortholog); double-strand break repair via homologous recombination (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); FOUND IN centrosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955485 6520747 6525359 - 102026429 AGCD01058621;GBDK01153601;XM_005403788;XM_005403789;XM_005403790;XM_005403791;XM_013504071;XM_013504072 XP_005403845;XP_005403846;XP_005403847;XP_005403848;XP_013359525;XP_013359526 MODEL 8861276 protein-coding Rmi1 RecQ mediated genome instability 1 INVOLVED IN double-strand break repair via homologous recombination (ortholog); glucose homeostasis (ortholog); multicellular organism growth (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); COVID-19 (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); RecQ family helicase-topoisomerase III complex (ortholog) NW_004955432 3215372 3241840 - 102003897 AGCD01030640;AGCD01030641;AGCD01030642;AGCD01030643;GBCE01037371;GBDF01118985;XM_013516017 XP_013371471 MODEL 8881152 protein-coding LOC102008593 cholesterol 7-alpha-monooxygenase ENCODES a protein that exhibits cholesterol 7-alpha-monooxygenase activity (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); cellular response to cholesterol (ortholog); cellular response to glucose stimulus (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; bile acid signaling pathway; cerebrotendinous xanthomatosis pathway; ASSOCIATED WITH alcoholic hepatitis (ortholog); autism spectrum disorder (ortholog); cholestasis (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog) NW_004955454 17035105 17078854 - 102008593 AGCD01045541;AGCD01045542;AGCD01045543;AGCD01045544;GBBH01001699;GBCQ01008759;XM_013520108 XP_013375562 MODEL 8742095 ncrna LOC102009009 uncharacterized LOC102009009 NW_004955452 14645767 14677079 + 102009009 AGCD01044474;AGCD01044475;AGCD01044476;GBDF01115467;XR_001236027 MODEL 8869911 protein-coding Tsr2 TSR2 ribosome maturation factor ASSOCIATED WITH Aarskog syndrome (ortholog); Atkin Syndrome (ortholog); autistic disorder (ortholog) NW_004955475 1698926 1703404 + 102022384 AGCD01054758;GBCQ01101886;XM_005401522;XM_013502825 XP_005401579;XP_013358279 MODEL 8924299 protein-coding Sin3a SIN3 transcription regulator family member A ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); cellular response to dopamine (ortholog); cellular response to glucose stimulus (ortholog); PARTICIPATES IN DNA modification pathway; Hedgehog signaling pathway; ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN chromatin (ortholog); histone deacetylase complex (ortholog); kinetochore (ortholog) NW_004955450 2804551 2870450 + 102027592 AGCD01042407;AGCD01042408;AGCD01042409;AGCD01042410;GBDI01010558;XM_005393507;XM_013518961 XP_005393564;XP_013374415 MODEL 8775681 protein-coding Ndufb8 NADH:ubiquinone oxidoreductase subunit B8 ASSOCIATED WITH acute kidney failure (ortholog); Alzheimer's disease (ortholog); Arsenic Poisoning (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955485 9607781 9613123 + 102008538 AGCD01058774;GBDF01007822;XM_005403905 XP_005403962 MODEL 8956377 protein-coding Slc35a3 solute carrier family 35 member A3 ENCODES a protein that exhibits UDP-galactose transmembrane transporter activity (ortholog); INVOLVED IN UDP-N-acetylglucosamine transmembrane transport (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); Arthrogryposis, Impaired Intellectual Development, and Seizures (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955435 4747981 4774250 + 102003058 AGCD01032850;AGCD01032851;GBDF01225369;XM_013516439 XP_013371893 MODEL 8914181 protein-coding Lman1 lectin, mannose binding 1 ENCODES a protein that exhibits identical protein binding (ortholog); metal ion binding (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); endoplasmic reticulum organization (ortholog); Golgi organization (ortholog); PARTICIPATES IN protein secretory pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); factor V deficiency (ortholog); factor XIII deficiency (ortholog); FOUND IN COPII-coated ER to Golgi transport vesicle (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955402 43465556 43495789 - 102014193 AGCD01001073;GBDI01115194;XM_005373001;XM_013511080 XP_005373058;XP_013366534 MODEL 39131484 protein-coding PGPEP1L pyroglutamyl-peptidase I like 9008903 pseudo LOC102019330 synphilin-1-like NW_004955441 17320061 17322072 + 102019330 AGCD01037288 MODEL 8735993 protein-coding Sox6 SRY-box transcription factor 6 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN astrocyte differentiation (ortholog); brain development (ortholog); cardiac muscle cell differentiation (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); Developmental Disease (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955414 30965626 31532473 - 102027517 AGCD01015742;AGCD01015743;AGCD01015744;AGCD01015745;AGCD01015746;AGCD01015747;AGCD01015748;AGCD01015749;AGCD01015750;AGCD01015751;AGCD01015752;AGCD01015753;AGCD01015754;GBDF01281648;XM_005380342;XM_005380343;XM_005380355;XM_005380356;XM_005380357;XM_013511913;XM_013511914;XM_013511915;XM_013511916;XM_013511917;XM_013511918;XM_013511919;XM_013511920;XM_013511921;XM_013511922;XM_013511923;XM_013511924;XM_013511925;XM_013511926;XM_013511927;XM_013511928;XM_013511929;XM_013511930;XM_013511931;XM_013511932;XM_013511933 XP_005380399;XP_005380400;XP_005380412;XP_005380413;XP_005380414;XP_013367367;XP_013367368;XP_013367369;XP_013367370;XP_013367371;XP_013367372;XP_013367373;XP_013367374;XP_013367375;XP_013367376;XP_013367377;XP_013367378;XP_013367379;XP_013367380;XP_013367381;XP_013367382;XP_013367383;XP_013367384;XP_013367385;XP_013367386;XP_013367387 MODEL 8993621 ncrna LOC102018845 uncharacterized LOC102018845 NW_004955499 7438345 7462684 - 102018845 AGCD01063587;GBCE01090104;XR_001231453;XR_264222 MODEL 8953547 protein-coding Treml4 triggering receptor expressed on myeloid cells like 4 INVOLVED IN phagocytosis, engulfment (ortholog); positive regulation of defense response to virus by host (ortholog); positive regulation of toll-like receptor 13 signaling pathway (ortholog); ASSOCIATED WITH infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955437 7827329 7846406 - 102010521 AGCD01034469;GBDK01021729;XM_005389682;XM_013517108;XM_013517109 XP_005389739;XP_013372562;XP_013372563 MODEL 8832104 protein-coding Bclaf3 BCLAF1 and THRAP3 family member 3 ASSOCIATED WITH autistic disorder (ortholog); Coffin-Lowry syndrome (ortholog); developmental and epileptic encephalopathy 2 (ortholog) NW_004955509 383083 435163 - 102004624 AGCD01065931;AGCD01065932;GBDK01028165;XM_005407799;XM_005407800;XM_005407801;XM_013506297;XM_013506298;XM_013506299 XP_005407856;XP_005407857;XP_005407858;XP_013361751;XP_013361752;XP_013361753 MODEL 8966735 protein-coding Plekhb1 pleckstrin homology domain containing B1 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN regulation of cell differentiation (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); Experimental Liver Cirrhosis (ortholog); intellectual disability (ortholog); FOUND IN membrane (ortholog) NW_004955414 17826812 17840988 - 102014039 AGCD01015256;GBDI01000683;XM_005379942;XM_005379943;XM_005379944;XM_005379945;XM_005379946;XM_005379947 XP_005379999;XP_005380000;XP_005380001;XP_005380002;XP_005380003;XP_005380004 MODEL 8952718 protein-coding Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 ENCODES a protein that exhibits phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity (ortholog); INVOLVED IN negative regulation of phagocytosis (ortholog); phosphatidylinositol dephosphorylation (ortholog); FOUND IN late endosome membrane (ortholog); lysosomal membrane (ortholog); phagocytic vesicle membrane (ortholog) NW_004955417 7769365 7825892 - 102013504 AGCD01018015;AGCD01018016;GBDF01209250;XM_013512854 XP_013368308 MODEL 8782591 protein-coding LOC102003846 aldose reductase NW_004955410 33554985 33569352 + 102003846 AGCD01011372;AGCD01011373;GBCQ01005098;XM_005377536 XP_005377593 MODEL 9022173 protein-coding Smpd4 sphingomyelin phosphodiesterase 4 ENCODES a protein that exhibits sphingomyelin phosphodiesterase activity (ortholog); sphingomyelin phosphodiesterase D activity (ortholog); INVOLVED IN cellular response to tumor necrosis factor (ortholog); ceramide biosynthetic process (ortholog); endoplasmic reticulum organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, ARTHROGRYPOSIS, AND STRUCTURAL BRAIN ANOMALIES (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); nuclear envelope (ortholog) NW_004955442 19184794 19210999 - 102018777 AGCD01038040;GBCQ01008827;XM_005391811;XM_005391812;XM_005391813 XP_005391868;XP_005391869;XP_005391870 MODEL 39133036 snrna U6 U6 spliceosomal RNA 8866341 protein-coding LOC102008192 60S ribosomal protein L37a-like NW_004955458 10729549 10729854 - 102008192 AGCD01047704;XM_005397532 XP_005397589 MODEL 8777260 pseudo LOC102023877 mortality factor 4-like protein 1 pseudogene NW_004955457 11471032 11474512 + 102023877 AGCD01046970 MODEL 9003770 protein-coding Bco1 beta-carotene oxygenase 1 ENCODES a protein that exhibits beta-carotene 15,15'-dioxygenase activity (ortholog); INVOLVED IN beta-carotene metabolic process (ortholog); carotene catabolic process (ortholog); retinal metabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); familial cold autoinflammatory syndrome 3 (ortholog); giant axonal neuropathy 1 (ortholog) NW_004955522 3985515 4018116 + 102004509 AGCD01068410;AGCD01068411;AGCD01068412;GBBH01095123;XM_005409358 XP_005409415 MODEL 8949400 protein-coding LOC102013310 regenerating islet-derived protein 3-beta-like NW_004955424 7346797 7348894 + 102013310 AGCD01024435;GBDF01033597;XM_005385457;XM_005385458 XP_005385514;XP_005385515 MODEL 9044812 protein-coding LOC102024829 acyl-CoA desaturase 1 NW_004955507 6226478 6241055 + 102024829 AGCD01065698;GBCQ01002197;XM_005407700 XP_005407757 MODEL 39132459 snrna U6 U6 spliceosomal RNA 8734097 protein-coding Epgn epithelial mitogen ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); growth factor activity (ortholog); receptor ligand activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell surface receptor signaling pathway (ortholog); epidermal growth factor receptor signaling pathway (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; FOUND IN extracellular space (ortholog); plasma membrane (ortholog) NW_004955474 564329 573014 + 102006240 AGCD01054223;XM_005401311;XM_013502765;XM_013502766 XP_005401368;XP_013358219;XP_013358220 MODEL 8838809 trna Trnar-ccg transfer RNA arginine (anticodon CCG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004957365;NW_004955442;NW_004955465 7;14214277;13880906 79;14214349;13880978 +;-;+ 101978836 AGCD01037806;AGCD01050633;AGCD01080761 MODEL 8942609 ncrna LOC102012071 uncharacterized LOC102012071 NW_004955463 1330958 1377220 - 102012071 AGCD01049509;AGCD01049510;AGCD01049511;AGCD01049512;GBDF01208723;XR_263140 MODEL 8814779 protein-coding Rfk riboflavin kinase ENCODES a protein that exhibits riboflavin kinase activity (ortholog); INVOLVED IN apoptotic process (ortholog); flavin adenine dinucleotide biosynthetic process (ortholog); positive regulation of NAD(P)H oxidase activity (ortholog); PARTICIPATES IN riboflavin metabolic pathway; ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955512 2889265 2898195 + 102029315 AGCD01066691;AGCD01066692;GBBH01065333;GBDF01001741;XM_005408308 XP_005408365 MODEL 8996687 ncrna LOC102021071 uncharacterized LOC102021071 NW_004955403 17031181 17056708 + 102021071 AGCD01002070;GBBH01058565;XR_001233332;XR_259180 MODEL 8837774 protein-coding LOC102024830 uncharacterized LOC102024830 NW_004955429 15317879 15326356 - 102024830 AGCD01028802;GBDK01318132;XM_013515502 XP_013370956 MODEL 8817050 protein-coding Sin3b SIN3 transcription regulator family member B ENCODES a protein that exhibits chromatin binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN cardiac muscle tissue development (ortholog); negative regulation of DNA-templated transcription (ortholog); skeletal muscle tissue development (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN autosome (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955524 1049828 1067637 - 102029111 AGCD01068733;AGCD01068734;GBBH01118323;XM_013507309 XP_013362763 MODEL 8864079 ncrna LOC102015089 uncharacterized LOC102015089 NW_004955464 6232396 6252099 - 102015089 AGCD01050019;XR_263206 MODEL 8943982 protein-coding Qpct glutaminyl-peptide cyclotransferase ENCODES a protein that exhibits glutaminyl-peptide cyclotransferase activity (ortholog); zinc ion binding (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); melanoma (ortholog) NW_004955441 5138477 5168056 + 102006286 AGCD01036870;AGCD01036871;GBCE01029735;XM_005390874;XM_013517539 XP_005390931;XP_013372993 MODEL 8976735 protein-coding Rybp RING1 and YY1 binding protein ENCODES a protein that exhibits DNA binding (ortholog); nucleic acid binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); PcG protein complex (ortholog) NW_004955421 15728778 15803150 + 102005268 AGCD01021991;AGCD01021992;GBDF01118383;GBDI01356522;XM_013513794 XP_013369248 MODEL 8906021 ncrna LOC102018850 uncharacterized LOC102018850 NW_004955427 23573541 23591628 - 102018850 AGCD01027486;XR_261286 MODEL 8990388 protein-coding St3gal5 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 ENCODES a protein that exhibits lactosylceramide alpha-2,3-sialyltransferase activity (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 31 (ortholog); immunodeficiency 116 (ortholog) NW_004955424 1692182 1729206 + 102024023 AGCD01024246;GBBH01140143;XM_005385412 XP_005385469 MODEL 8912936 protein-coding LOC102022807 taste receptor type 2 member 13-like NW_004955413 7975331 7976260 - 102022807 AGCD01013841;XM_013511294 XP_013366748 MODEL 8931047 protein-coding Rflnb refilin B ENCODES a protein that exhibits filamin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament bundle organization (ortholog); epithelial to mesenchymal transition (ortholog); ASSOCIATED WITH cholestasis (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament bundle (ortholog) NW_004955481 2102576 2107947 - 102006457 AGCD01056866;GBCB01008384;GBDK01281227;XM_013503522 XP_013358976 MODEL 8900944 protein-coding Plekhb2 pleckstrin homology domain containing B2 ENCODES a protein that exhibits phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); ASSOCIATED WITH schizophrenia (ortholog) NW_004955459 594794 661152 + 102016896 AGCD01047942;AGCD01047943;AGCD01047944;AGCD01047945;AGCD01047946;AGCD01047947;GBCQ01001045;GBDJ01009535;XM_013521055 XP_013376509 MODEL 8723191 protein-coding Prr5l proline rich 5 like ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); negative regulation of protein phosphorylation (ortholog); phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH intellectual disability (ortholog); FOUND IN TORC2 complex (ortholog) NW_004955422 9972588 10069411 - 102005481 AGCD01022726;AGCD01022727;AGCD01022728;AGCD01022729;AGCD01022730;GBDK01140964;XM_005384107;XM_005384108;XM_005384112;XM_005384114;XM_005384115;XM_005384116;XM_013514246;XM_013514247;XM_013514248;XM_013514249 XP_005384164;XP_005384165;XP_005384169;XP_005384171;XP_005384172;XP_005384173;XP_013369700;XP_013369701;XP_013369702;XP_013369703 MODEL 8986771 ncrna LOC102007121 uncharacterized LOC102007121 NW_004955482 3110012 3117667 + 102007121 AGCD01057259;GBDF01304912;XR_263825 MODEL 9009520 pseudo LOC102008594 eukaryotic translation initiation factor 2A-like NW_004955406 5948906 5974852 + 102008594 AGCD01005744 MODEL 9007412 protein-coding Sftpd surfactant protein D ENCODES a protein that exhibits identical protein binding (ortholog); lipopolysaccharide binding (ortholog); monosaccharide binding (ortholog); INVOLVED IN lung alveolus development (ortholog); negative regulation of interleukin-2 production (ortholog); negative regulation of phagocytosis (ortholog); PARTICIPATES IN forkhead class A signaling pathway; surfactant homeostasis pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); adult respiratory distress syndrome (ortholog); asthma (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog); multivesicular body (ortholog) NW_004955510 213468 226096 + 102025710 AGCD01066142;GBDK01010352;XM_005407866;XM_005407867;XM_013506331 XP_005407923;XP_005407924;XP_013361785 MODEL 8735085 ncrna LOC102013311 uncharacterized LOC102013311 NW_004955499 2225788 2230856 + 102013311 AGCD01063428;GBDK01220024;XR_001231465 MODEL 8949215 protein-coding Rmi2 RecQ mediated genome instability 2 INVOLVED IN double-strand break repair via homologous recombination (ortholog); regulation of sister chromatid segregation (ortholog); resolution of DNA recombination intermediates (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 1C (ortholog); Landau-Kleffner syndrome (ortholog); MHC class II deficiency (ortholog); FOUND IN cytosol (ortholog); nuclear speck (ortholog); RecQ family helicase-topoisomerase III complex (ortholog) NW_004955442 7262381 7266992 - 102029669 AGCD01037623;GBDJ01028580;XM_005391165 XP_005391222 MODEL 8957718 protein-coding Bco2 beta-carotene oxygenase 2 ENCODES a protein that exhibits beta,beta-carotene-9',10'-cleaving oxygenase activity (ortholog); oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (ortholog); INVOLVED IN carotene catabolic process (ortholog); carotene metabolic process (ortholog); carotenoid metabolic process (ortholog); ASSOCIATED WITH BH4-deficient hyperphenylalaninemia A (ortholog); chromosome 11 partial duplication syndrome (ortholog); hepatocellular carcinoma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955412 13838260 13872886 + 102029836 AGCD01012846;GBDF01116400;XM_005378119;XM_013511045 XP_005378176;XP_013366499 MODEL 8794629 protein-coding Spag4 sperm associated antigen 4 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); FOUND IN microtubule (ortholog) NW_004955422 25840302 25844787 - 102009071 AGCD01023269;GBDF01000367;XM_005384785;XM_005384788 XP_005384842;XP_005384845 MODEL 8881163 ncrna LOC102008595 uncharacterized LOC102008595 NW_004955455 5552047 5558107 + 102008595 AGCD01045738;GBDF01182597;XR_001236290;XR_001236291 MODEL 8782340 protein-coding Sox7 SRY-box transcription factor 7 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN endoderm formation (ortholog); negative regulation of DNA-templated transcription (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH congenital diaphragmatic hernia (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955403 52253816 52259884 - 102024079 AGCD01003003;GBDJ01190984;XM_005373806 XP_005373863 MODEL 8801845 protein-coding Rai14 retinoic acid induced 14 ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955426 19831811 19980717 + 102029537 AGCD01026554;AGCD01026555;AGCD01026556;AGCD01026557;AGCD01026558;AGCD01026559;AGCD01026560;GBBH01006738;XM_005386173;XM_005386174;XM_005386175;XM_013514963 XP_005386230;XP_005386231;XP_005386232;XP_013370417 MODEL 8777792 protein-coding Trerf1 transcriptional regulating factor 1 ENCODES a protein that exhibits nuclear progesterone receptor binding (ortholog); transcription coactivator activity (ortholog); transcription coactivator binding (ortholog); INVOLVED IN cellular response to progesterone stimulus (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955437 8411951 8600283 - 102018648 AGCD01034489;AGCD01034490;AGCD01034491;AGCD01034492;GBDF01084113;GBDK01059855;XM_013516789 XP_013372243 MODEL 8797383 protein-coding LOC102003847 NADH-cytochrome b5 reductase-like FOUND IN nucleoplasm (ortholog) NW_004955464 5065935 5087968 + 102003847 AGCD01049998;AGCD01049999;GBDJ01349008;XM_005398530;XM_005398531;XM_013521665 XP_005398587;XP_005398588;XP_013377119 MODEL 8724109 ncrna LOC102018853 uncharacterized LOC102018853 NW_004955433 21601809 21606853 + 102018853 AGCD01031928;GBDF01290084;XR_261604 MODEL 8897962 protein-coding Ppip5k1 diphosphoinositol pentakisphosphate kinase 1 ENCODES a protein that exhibits 5-diphosphoinositol pentakisphosphate 1-kinase activity (ortholog); inositol hexakisphosphate 5-kinase activity (ortholog); inositol hexakisphosphate kinase activity (ortholog); INVOLVED IN inositol metabolic process (ortholog); PARTICIPATES IN inositol phosphate metabolic pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness 16 (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955416 10074239 10113268 - 102008408 AGCD01017105;AGCD01017106;GBCB01060923;XM_005381392;XM_005381393;XM_005381402;XM_013512448;XM_013512449;XM_013512450;XM_013512451;XM_013512452;XM_013512453;XM_013512454;XM_013512455;XM_013512456 XP_005381449;XP_005381450;XP_005381459;XP_013367902;XP_013367903;XP_013367904;XP_013367905;XP_013367906;XP_013367907;XP_013367908;XP_013367909;XP_013367910 MODEL 8854423 protein-coding Poldip2 DNA polymerase delta interacting protein 2 INVOLVED IN error-free translesion synthesis (ortholog); mitochondrion organization (ortholog); mitotic spindle assembly (ortholog); ASSOCIATED WITH Neointima (ortholog); streptococcal meningitis (ortholog); FOUND IN cell-cell junction (ortholog); midbody (ortholog); mitochondrial matrix (ortholog) NW_004955481 4776721 4785817 + 102006912 AGCD01056952;GBDF01009609;GBDI01062561;XM_005402761 XP_005402818 MODEL 8880558 protein-coding LOC102008193 uncharacterized LOC102008193 NW_004955409 10334641 10336946 - 102008193 AGCD01009464;GBDK01043622;XM_005376774;XM_005376775 XP_005376831;XP_005376832 MODEL 39132460 snrna U6 U6 spliceosomal RNA 9033586 trna Trnar-ccu transfer RNA arginine (anticodon CCU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955553;NW_004955553;NW_004955442;NW_004955442;NW_004955494 1884364;1885977;14211807;14190493;3729252 1884436;1886049;14211879;14190565;3729324 +;+;-;-;- 101978840 AGCD01037805;AGCD01037806;AGCD01061481;AGCD01072903 MODEL 8871840 protein-coding Prr7 proline rich 7, synaptic ENCODES a protein that exhibits long-chain fatty acid binding (ortholog); protein tyrosine kinase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN alpha-beta T cell differentiation (ortholog); positive regulation of apoptotic process (ortholog); postsynapse to nucleus signaling pathway (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); neuron projection (ortholog) NW_004955408 29685254 29695113 + 102026192 AGCD01008766;GBBH01064463;XM_005376435;XM_013509844 XP_005376492;XP_013365298 MODEL 9002802 protein-coding Slc35a4 solute carrier family 35 member A4 INVOLVED IN positive regulation of cellular respiration (ortholog); positive regulation of translation in response to stress (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); mitochondrial inner membrane (ortholog) NW_004955418 114916 116878 - 102030308 AGCD01018668;GBDK01127414;XM_005382020 XP_005382077 MODEL 8759906 protein-coding LOC102019331 olfactory receptor 11H4 NW_004955550 1024441 1025403 + 102019331 AGCD01072541;XM_005412042 XP_005412099 MODEL 8924926 protein-coding Lman1l lectin, mannose binding 1 like ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); Brugada syndrome 8 (ortholog) NW_004955450 3111004 3123266 - 102009444 AGCD01042422;GBDJ01215387;XM_005393541;XM_005393542 XP_005393598;XP_005393599 MODEL 10120789 pseudo LOC106149939 small nuclear ribonucleoprotein E-like NW_004955458 975486 975893 - 106149939 AGCD01047160 MODEL 8869984 protein-coding LOC102024831 cyclin-Y-like protein 1 NW_004955510 39824 115590 - 102024831 AGCD01066132;AGCD01066133;AGCD01066134;AGCD01066135;AGCD01066136;AGCD01066137;AGCD01066138;GBDF01021192;XM_005407863 XP_005407920 MODEL 8762834 ncrna LOC102009756 uncharacterized LOC102009756 NW_004955437 596440 600236 + 102009756 AGCD01034150;AGCD01034151;GBDF01305486;XR_261820 MODEL 9037830 protein-coding Wnk3 WNK lysine deficient protein kinase 3 ENCODES a protein that exhibits molecular condensate scaffold activity (ortholog); protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cell volume homeostasis (ortholog); cellular hyperosmotic response (ortholog); maintenance of blood-brain barrier (ortholog); ASSOCIATED WITH Atkin Syndrome (ortholog); autistic disorder (ortholog); Cornelia de Lange syndrome 2 (ortholog); FOUND IN adherens junction (ortholog); bicellular tight junction (ortholog); cytoplasm (ortholog) NW_004955475 1441068 1641599 - 102020660 AGCD01054753;AGCD01054754;AGCD01054755;AGCD01054756;AGCD01054757;GBDF01016694;XM_013502857;XM_013502858;XM_013502859;XM_013502860;XM_013502861 XP_013358311;XP_013358312;XP_013358313;XP_013358314;XP_013358315 MODEL 9037931 protein-coding Pip5k1a phosphatidylinositol-4-phosphate 5-kinase type 1 alpha ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); kinase binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); activation of GTPase activity (ortholog); cell chemotaxis (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; E-cadherin signaling pathway; phosphoinositide metabolic pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 60 with seizures (ortholog); Dravet syndrome (ortholog); Experimental Neoplasms (ortholog); FOUND IN cytosol (ortholog); lamellipodium (ortholog); mRNA cleavage and polyadenylation specificity factor complex (ortholog) NW_004955588 555818 605459 + 102027700 AGCD01076115;AGCD01076116;AGCD01076117;GBBH01027015;XM_013509927;XM_013509928;XM_013509929;XM_013509930;XR_001232530 XP_013365381;XP_013365382;XP_013365383;XP_013365384 MODEL 9029478 protein-coding Sox8 SRY-box transcription factor 8 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN adipose tissue development (ortholog); astrocyte fate commitment (ortholog); cell fate commitment (ortholog); ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955442 16236286 16241093 - 102013559 AGCD01037893;GBBH01171342;XM_005391596 XP_005391653 MODEL 8954642 protein-coding Qpctl glutaminyl-peptide cyclotransferase like ENCODES a protein that exhibits glutaminyl-peptide cyclotransferase activity (ortholog); zinc ion binding (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955574 165031 172713 + 102017522 AGCD01075088;GBDF01222689;XM_005413799;XM_013509513;XM_013509514 XP_005413856;XP_013364967;XP_013364968 MODEL 9016843 protein-coding LOC102022809 olfactory receptor 51F2-like NW_004955414 20291389 20292339 - 102022809 AGCD01015367;XM_005380467 XP_005380524 MODEL 10297437 ncrna LOC106146835 uncharacterized LOC106146835 NW_004955497 6889254 6889959 + 106146835 AGCD01062651;GBDF01250985;XR_001231436 MODEL 8977235 protein-coding Ryk receptor like tyrosine kinase ENCODES a protein that exhibits frizzled binding (ortholog); protein tyrosine kinase activity (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN axon extension involved in axon guidance (ortholog); axon guidance (ortholog); axonogenesis (ortholog); ASSOCIATED WITH cleft palate (ortholog); Craniofacial Abnormalities (ortholog); orofacial cleft 1 (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); membrane (ortholog) NW_004955501 4360051 4419083 + 102024706 AGCD01064128;AGCD01064129;GBCE01055771;XM_005406801;XM_013505792;XM_013505793 XP_005406858;XP_013361246;XP_013361247 MODEL 9042475 protein-coding Tm2d3 TM2 domain containing 3 INVOLVED IN lateral inhibition (ortholog); ASSOCIATED WITH frontotemporal dementia (ortholog) NW_004955416 28499077 28507907 - 102011764 AGCD01017630;GBDK01009358;XM_005381648 XP_005381705 MODEL 8736405 protein-coding LOC102006019 olfactory receptor 51I2-like NW_004955414 21379795 21380742 - 102006019 AGCD01015417;XM_005380088 XP_005380145 MODEL 8806450 protein-coding Tsr3 TSR3 ribosome maturation factor ENCODES a protein that exhibits 18S rRNA aminocarboxypropyltransferase activity (ortholog); transferase activity (ortholog); INVOLVED IN enzyme-directed rRNA pseudouridine synthesis (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); Idiopathic Generalized Epilepsy (ortholog) NW_004955442 15881663 15884222 + 102007944 AGCD01037884;GBBH01118537;XM_005391578 XP_005391635 MODEL 39133529 snrna U4 U4 spliceosomal RNA 8867808 ncrna LOC102003849 uncharacterized LOC102003849 NW_004955412 914841 917029 + 102003849 AGCD01012505;GBDK01170246;XR_259961 MODEL 9019091 protein-coding Epha1 EPH receptor A1 ENCODES a protein that exhibits ephrin receptor activity (ortholog); fibronectin binding (ortholog); protein kinase activity (ortholog); INVOLVED IN cell surface receptor protein tyrosine kinase signaling pathway (ortholog); negative regulation of cell migration (ortholog); positive regulation of angiogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Alzheimer's disease (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); Colorectal Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955494 256008 268777 + 102024246 AGCD01061372;GBBH01102984;GBDI01325851;XM_005405360;XM_013504977 XP_005405417;XP_013360431 MODEL 8768017 ncrna LOC102021073 uncharacterized LOC102021073 NW_004955883 101 6586 - 102021073 AGCD01078572;AGCD01078573;AGCD01078574;GBDJ01114613;XR_001232602;XR_001232603 MODEL 8924950 ncrna LOC102012073 uncharacterized LOC102012073 NW_004955464 5894847 5895631 - 102012073 AGCD01050015;GBDF01046163;XR_001236693;XR_263202;XR_263203 MODEL 39133530 snrna U4 U4 spliceosomal RNA 8710924 protein-coding Schip1 schwannomin interacting protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN estrogen metabolic process (ortholog); face morphogenesis (ortholog); female gonad development (ortholog); ASSOCIATED WITH familial meningioma (ortholog); FOUND IN cell junction (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955448 10364261 10502799 + 102029245 AGCD01041490;AGCD01041491;AGCD01041492;AGCD01041493;GBDK01070603;XM_005393115;XM_005393116;XM_005393117 XP_005393172;XP_005393173;XP_005393174 MODEL 8853448 protein-coding Qprt quinolinate phosphoribosyltransferase ENCODES a protein that exhibits identical protein binding (ortholog); nicotinate-nucleotide diphosphorylase (carboxylating) activity (ortholog); INVOLVED IN NAD biosynthetic process (ortholog); quinolinate catabolic process (ortholog); quinolinate metabolic process (ortholog); PARTICIPATES IN de novo nicotinamide adenine dinucleotide biosynthetic pathway; niacin metabolic pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN catalytic complex (ortholog) NW_004955493 7225472 7243078 - 102011554 AGCD01061168;AGCD01061169;AGCD01061170;GBCQ01003527;XM_005405247 XP_005405304 MODEL 8881196 protein-coding Slc7a6 solute carrier family 7 member 6 ENCODES a protein that exhibits arginine binding (ortholog); basic amino acid transmembrane transporter activity (ortholog); L-arginine transmembrane transporter activity (ortholog); INVOLVED IN glycine betaine transport (ortholog); L-arginine transmembrane transport (ortholog); L-leucine transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog) NW_004955484 8335508 8383814 - 102009185 AGCD01058376;AGCD01058377;XM_005403582;XM_013503921;XM_013503922;XM_013503923;XM_013503924;XM_013503925;XM_013503926;XM_013503927;XM_013503928 XP_005403639;XP_013359375;XP_013359376;XP_013359377;XP_013359378;XP_013359379;XP_013359380;XP_013359381;XP_013359382 MODEL 8928663 protein-coding Sinhcaf SIN3-HDAC complex associated factor INVOLVED IN negative regulation of cell differentiation (ortholog); negative regulation of cell migration (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH pancreatic cancer (ortholog); FOUND IN Sin3-type complex (ortholog) NW_004955505 4344465 4377463 + 102012560 AGCD01065104;AGCD01065105;AGCD01065106;AGCD01065107;GBBH01186638;XM_005407132 XP_005407189 MODEL 8864084 protein-coding LOC102015092 antigen WC1.1-like NW_004955413 4930253 4971008 + 102015092 AGCD01013640;AGCD01013641;AGCD01013642;AGCD01013643;AGCD01013644;GBDK01258461;XM_005378866;XM_013511514 XP_005378923;XP_013366968 MODEL 8977656 protein-coding Epha10 EPH receptor A10 ENCODES a protein that exhibits transmembrane-ephrin receptor activity (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 88 (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog) NW_004955452 15510054 15547769 - 102014005 AGCD01044486;AGCD01044487;GBDF01009991;XM_013519462 XP_013374916 MODEL 8890396 protein-coding Prr9 proline rich 9 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog) NW_004955592 208102 209795 - 102008166 AGCD01076301;XM_005414607 XP_005414664 MODEL 8944025 ncrna LOC102012074 uncharacterized LOC102012074 NW_004955411 18978377 19015927 - 102012074 AGCD01012029;AGCD01012030;GBDF01115149;XR_259938 MODEL 8830875 protein-coding Rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ENCODES a protein that exhibits O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN negative regulation of Notch signaling pathway (ortholog); positive regulation of Notch signaling pathway (ortholog); regulation of Notch signaling pathway (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH Weight Gain (ortholog) NW_004955506 1110146 1113130 + 102022207 AGCD01065245;AGCD01065246;GBBH01119203;GBBH01119219;XM_005407503 XP_005407560 MODEL 8885335 protein-coding Rai2 retinoic acid induced 2 ASSOCIATED WITH autistic disorder (ortholog); Coffin-Lowry syndrome (ortholog); developmental and epileptic encephalopathy 2 (ortholog) NW_004955519 494463 553839 + 102030562 AGCD01067876;AGCD01067877;GBCE01153611;GBDJ01234060;XM_005409127 XP_005409184 MODEL 8726261 protein-coding Qrfp pyroglutamylated RFamide peptide ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); neuropeptide hormone activity (ortholog); orexigenic neuropeptide QRFP receptor binding (ortholog); INVOLVED IN grooming behavior (ortholog); locomotory behavior (ortholog); neuropeptide signaling pathway (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955513 802809 805835 - 102017901 AGCD01066832;GBCE01009059;XM_005408349 XP_005408406 MODEL 8941115 protein-coding LOC102024833 olfactory receptor 2G3-like NW_004955511 1772292 1773227 - 102024833 AGCD01066379;XM_005408243 XP_005408300 MODEL 10191111 pseudo LOC102018079 Ig heavy chain V-I region 5-like NW_004955470 851205 851707 - 102018079 AGCD01052624 MODEL 8876044 protein-coding Ppip5k2 diphosphoinositol pentakisphosphate kinase 2 ENCODES a protein that exhibits 5-diphosphoinositol pentakisphosphate 1-kinase activity (ortholog); ATP binding (ortholog); inositol hexakisphosphate kinase activity (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 100 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytosol (ortholog) NW_004955418 10822220 10898070 - 102026976 AGCD01018987;AGCD01018988;GBDF01157112;XM_005382192;XM_005382193;XM_005382195;XM_005382196;XM_005382197;XM_005382198;XM_005382199;XM_005382200;XM_005382201;XM_005382204;XM_013513002;XM_013513003;XM_013513004;XM_013513005;XM_013513006 XP_005382249;XP_005382250;XP_005382252;XP_005382253;XP_005382254;XP_005382255;XP_005382256;XP_005382257;XP_005382258;XP_005382261;XP_013368456;XP_013368457;XP_013368458;XP_013368459;XP_013368460 MODEL 10120727 protein-coding LOC106146837 phosphatidylinositol 4,5-bisphosphate 5-phosphatase A-like NW_004955497 1662397 1711799 + 106146837 AGCD01062467;AGCD01062468;AGCD01062469;GBDF01179482;GBDF01179483;XM_013505467 XP_013360921 MODEL 8832887 protein-coding LOC102007123 olfactory receptor 15-like NW_004955418 29652822 29653751 - 102007123 AGCD01019476;XM_005382358 XP_005382415 MODEL 8734265 protein-coding Sytl3 synaptotagmin like 3 ENCODES a protein that exhibits calcium-dependent phospholipid binding (ortholog); neurexin family protein binding (ortholog); phospholipid binding (ortholog); INVOLVED IN exocytosis (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); primary ciliary dyskinesia 32 (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog) NW_004955439 3740044 3825954 - 102010948 AGCD01035688;AGCD01035689;AGCD01035690;GBDJ01063769;XM_005390515;XM_005390516;XM_005390518;XM_013517357;XM_013517358;XM_013517359 XP_005390572;XP_005390573;XP_005390575;XP_013372811;XP_013372812;XP_013372813 MODEL 8833996 protein-coding Sox9 SRY-box transcription factor 9 ENCODES a protein that exhibits beta-catenin binding (ortholog); bHLH transcription factor binding (ortholog); chromatin binding (ortholog); INVOLVED IN anterior head development (ortholog); aortic valve morphogenesis (ortholog); apoptotic process (ortholog); ASSOCIATED WITH 46,XX sex reversal 2 (ortholog); 46,XY sex reversal 10 (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955478 941684 945563 - 102020005 AGCD01055751;GBDJ01031941;XM_005402098 XP_005402155 MODEL 9036351 protein-coding LOC102022812 spindlin-2B NW_004955475 3534147 3535736 + 102022812 AGCD01054843;GBBH01110817;GBDK01323412;XM_013502884 XP_013358338 MODEL 8943252 protein-coding Tssc4 tumor suppressing subtransferable candidate 4 ENCODES a protein that exhibits molecular sequestering activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN spliceosomal snRNP assembly (ortholog); spliceosomal tri-snRNP complex assembly (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); U5 snRNP (ortholog) NW_004955422 14175271 14178991 + 102014579 AGCD01022855;GBDF01024714;XM_013514301;XM_013514302 XP_013369755;XP_013369756 MODEL 9016007 protein-coding Sfxn1 sideroflexin 1 ENCODES a protein that exhibits L-alanine transmembrane transporter activity (ortholog); L-serine transmembrane transporter activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); iron ion transport (ortholog); L-alanine transport (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Colorectal Neoplasms (ortholog); lung adenocarcinoma (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955408 28054211 28105294 + 102006545 AGCD01008703;AGCD01008704;AGCD01008705;AGCD01008706;AGCD01008707;GBDK01358301;XM_005376362;XM_013509460 XP_005376419;XP_013364914 MODEL 8872071 ncrna LOC102005689 uncharacterized LOC102005689 NW_004955467 6901040 6907444 - 102005689 AGCD01051425;GBDF01303832;XR_263347 MODEL 9020113 pseudo LOC102017715 sialic acid-binding Ig-like lectin 13 NW_004955558 1206318 1210776 - 102017715 AGCD01073422 MODEL 39133531 snrna U4 U4 spliceosomal RNA 39133037 snrna U6 U6 spliceosomal RNA 9031253 protein-coding Sfrp1 secreted frizzled related protein 1 ENCODES a protein that exhibits cysteine-type endopeptidase activity (ortholog); frizzled binding (ortholog); heparin binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); BMP signaling pathway (ortholog); bone trabecula formation (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); diastolic heart failure (ortholog); FOUND IN cell surface (ortholog); collagen-containing extracellular matrix (ortholog); cytosol (ortholog) NW_004955536 1663721 1702678 + 102015981 AGCD01070766;GBCE01029787;XM_005410533 XP_005410590 MODEL 10373515 protein-coding LOC106149941 uncharacterized LOC106149941 NW_004955458 3649750 3653101 - 106149941 AGCD01047331;AGCD01047332;XM_013520803 XP_013376257 MODEL 9042589 protein-coding LOC102015093 olfactory receptor 1468-like NW_004955467 13347163 13348101 + 102015093 AGCD01051671;XM_005399764 XP_005399821 MODEL 8791067 protein-coding Slc7a6os solute carrier family 7 member 6 opposite strand INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); Myoclonic Epilepsies (ortholog) NW_004955484 8340059 8348776 + 102009505 AGCD01058376;GBDF01221281;XM_005403583 XP_005403640 MODEL 8836055 protein-coding Pgr progesterone receptor ENCODES a protein that exhibits ATPase binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to estrogen stimulus (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); cellular response to gonadotropin stimulus (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); ataxia telangiectasia (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); chromatin (ortholog) NW_004955412 4643839 4693478 - 102007639 AGCD01012599;AGCD01012600;AGCD01012601;GBCE01175276;GBDJ01419714;XM_005377963 XP_005378020 MODEL 8773163 protein-coding Rfpl4b ret finger protein like 4B ASSOCIATED WITH body dysmorphic disorder (ortholog) NW_004955526 4242108 4253095 - 102013207 AGCD01069364;XM_013507355 XP_013362809 MODEL 8938040 ncrna LOC102006020 uncharacterized LOC102006020 NW_004955414 22872844 22875573 - 102006020 AGCD01015483;GBCQ01017796;XR_260188 MODEL 8833772 protein-coding LOC102012075 cytochrome P450 4A6-like NW_004955464 11526301 11537560 + 102012075 AGCD01050155;GBBH01214054;XM_005398648;XM_013521715 XP_005398705;XP_013377169 MODEL 9060023 pseudo LOC102008195 40S ribosomal protein S14 pseudogene NW_004955409 22320691 22321337 + 102008195 AGCD01010034 MODEL 8882303 protein-coding LOC102024835 uncharacterized LOC102024835 NW_004955513 3906959 3909703 - 102024835 AGCD01066912;XM_005408645 XP_005408702 MODEL 8813936 protein-coding LOC102023518 vomeronasal type-2 receptor 116-like NW_004955524 544031 559678 + 102023518 AGCD01068682;AGCD01068683;GBDF01056480;XM_013507186 XP_013362640 MODEL 8953327 protein-coding Spag5 sperm associated antigen 5 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN chromosome segregation (ortholog); establishment of spindle orientation (ortholog); mitotic sister chromatid segregation (ortholog); ASSOCIATED WITH cervical cancer (ortholog); COVID-19 (ortholog); Spontaneous Abortions (ortholog); FOUND IN centriolar satellite (ortholog); ciliary basal body (ortholog); ciliary rootlet (ortholog) NW_004955481 4558748 4576320 + 102029625 AGCD01056944;GBDF01004685;XM_005402745;XM_005402746 XP_005402802;XP_005402803 MODEL 8881134 pseudo LOC102007124 allograft inflammatory factor 1 pseudogene NW_004955419 15234825 15235399 - 102007124 AGCD01020068;XR_260632 MODEL 9052250 protein-coding Rbm19 RNA binding motif protein 19 INVOLVED IN positive regulation of embryonic development (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955482 9930237 10032597 - 102019807 AGCD01057586;AGCD01057587;GBDI01262719;XM_005403230;XM_013503702 XP_005403287;XP_013359156 MODEL 9014292 protein-coding LOC102008596 keratin-associated protein 20-2-like NW_004955407 30188698 30188859 + 102008596 AGCD01007628;XM_005375645 XP_005375702 MODEL 8793967 ncrna LOC102009015 uncharacterized LOC102009015 NW_004955407 17180370 17193372 + 102009015 AGCD01007241;XR_259563 MODEL 8988706 protein-coding Trex1 three prime repair exonuclease 1 ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); 3'-5'-DNA exonuclease activity (ortholog); adenyl deoxyribonucleotide binding (ortholog); INVOLVED IN activation of immune response (ortholog); adaptive immune response (ortholog); apoptotic cell clearance (ortholog); PARTICIPATES IN DNA replication pathway; G2/M DNA damage checkpoint pathway; ASSOCIATED WITH Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 1 (ortholog); brain disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955532 533877 535767 + 102025941 AGCD01070130;GBBH01050782;XM_005410151 XP_005410208 MODEL 8733057 protein-coding Tssk2 testis specific serine kinase 2 ENCODES a protein that exhibits magnesium ion binding (ortholog); protein serine/threonine kinase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN peptidyl-serine phosphorylation (ortholog); protein autophosphorylation (ortholog); spermatid development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN acrosomal vesicle (ortholog); centriole (ortholog); cytoplasm (ortholog) NW_004955442 18846491 18847485 - 102012906 AGCD01038022;GBDF01236314;XM_005415367 XP_005415424 MODEL 8813157 pseudo LOC102023881 ubiquilin-4-like NW_004955410 25786570 25790499 - 102023881 AGCD01011174 MODEL 9056314 protein-coding LOC102010850 cytochrome P450 1A1 ENCODES a protein that exhibits arachidonate monooxygenase activity (ortholog); demethylase activity (ortholog); enzyme binding (ortholog); INVOLVED IN 9-cis-retinoic acid biosynthetic process (ortholog); amine metabolic process (ortholog); camera-type eye development (ortholog); PARTICIPATES IN gefitinib pharmacokinetics pathway; phase I biotransformation pathway via cytochrome P450; tamoxifen pharmacokinetics pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Lung Injury (ortholog); acute lymphoblastic leukemia (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955450 3183958 3189488 + 102010850 AGCD01042426;GBDK01432211;XM_005393546;XM_005393547 XP_005393603;XP_005393604 MODEL 9067386 protein-coding Ndufb9 NADH:ubiquinone oxidoreductase subunit B9 ASSOCIATED WITH nuclear type mitochondrial complex I deficiency 24 (ortholog); trichorhinophalangeal syndrome type I (ortholog); Weight Gain (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955540 3198140 3203470 + 102009218 AGCD01071336;GBBH01031574;XM_005410945;XM_005410946 XP_005411002;XP_005411003 MODEL 8914210 protein-coding Plekhd1 pleckstrin homology and coiled-coil domain containing D1 ASSOCIATED WITH Breast Neoplasms (ortholog) NW_004955466 853902 878813 - 102015091 AGCD01050680;GBCB01056747;GBCE01126830;XM_013521969 XP_013377423 MODEL 10177620 pseudo LOC106149942 uncharacterized LOC106149942 NW_004955458 4475421 4533274 - 106149942 AGCD01047416;AGCD01047417;AGCD01047418 MODEL 8872126 protein-coding Poldip3 DNA polymerase delta interacting protein 3 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN poly(A)+ mRNA export from nucleus (ortholog); positive regulation of translation (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH common variable immunodeficiency 4 (ortholog); Developmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities (ortholog); intellectual disability (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); nuclear speck (ortholog) NW_004955413 27944109 27968156 - 102011755 AGCD01014538;AGCD01014539;GBBH01060544;XM_005379420 XP_005379477 MODEL 39132461 snrna U6 U6 spliceosomal RNA 8700315 protein-coding Sfrp2 secreted frizzled related protein 2 ENCODES a protein that exhibits endopeptidase activator activity (ortholog); enzyme activator activity (ortholog); fibronectin binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); apoptotic process (ortholog); BMP signaling pathway (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); inflammatory bowel disease (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular space (ortholog) NW_004955471 8103937 8112596 - 102006653 AGCD01053178;AGCD01053179;GBBH01060570;GBDJ01000856;XM_005400928 XP_005400985 MODEL 8715218 protein-coding Rmnd1 required for meiotic nuclear division 1 homolog INVOLVED IN positive regulation of mitochondrial translation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); combined oxidative phosphorylation deficiency 11 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955439 10151357 10193765 + 102029902 AGCD01035858;GBDF01252199;XM_005390579;XM_005390581 XP_005390636;XP_005390638 MODEL 8711305 protein-coding Ryr1 ryanodine receptor 1 ENCODES a protein that exhibits calcium channel activity (ortholog); calcium-induced calcium release activity (ortholog); enzyme binding (ortholog); INVOLVED IN calcium ion transport (ortholog); cellular response to ATP (ortholog); cellular response to caffeine (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH ankyloglossia (ortholog); anterior segment dysgenesis (ortholog); anterior segment dysgenesis 7 (ortholog); FOUND IN cell cortex (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955468 879807 1000118 - 102016148 AGCD01051742;AGCD01051743;AGCD01051744;AGCD01051745;AGCD01051746;AGCD01051747;AGCD01051748;GBCB01005975;GBDI01002716;XM_013522408 XP_013377862 MODEL 9031681 protein-coding Slc7a7 solute carrier family 7 member 7 ENCODES a protein that exhibits basic amino acid transmembrane transporter activity (ortholog); INVOLVED IN L-arginine transmembrane transport (ortholog); L-leucine transport (ortholog); regulation of arginine metabolic process (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); Chediak-Higashi syndrome (ortholog); FOUND IN basolateral plasma membrane (ortholog) NW_004955409 37467151 37513533 + 102005677 AGCD01010521;AGCD01010522;AGCD01010523;GBBH01229030;XM_005377122;XM_005377123;XM_005377124;XM_005377126;XM_005377127;XM_013510452 XP_005377179;XP_005377180;XP_005377181;XP_005377183;XP_005377184;XP_013365906 MODEL 8984525 protein-coding Bcor BCL6 corepressor ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); heat shock protein binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); chromatin remodeling (ortholog); heart development (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adenoid cystic carcinoma (ortholog); anterior segment dysgenesis 8 (ortholog); FOUND IN BCOR complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955566 1412540 1510339 - 102008470 AGCD01074359;AGCD01074360;AGCD01074361;AGCD01074362;AGCD01074363;GBBH01126083;XM_005413277;XM_005413278;XM_005413279;XM_005413280;XM_005413281;XM_013509214;XM_013509215;XM_013509216;XM_013509217 XP_005413334;XP_005413335;XP_005413336;XP_005413337;XP_005413338;XP_013364668;XP_013364669;XP_013364670;XP_013364671 MODEL 8903669 protein-coding LOC102021075 beta-defensin 106A-like NW_004955403 53581580 53584377 + 102021075 AGCD01003064;XM_005373912 XP_005373969 MODEL 8952468 ncrna LOC102022815 uncharacterized LOC102022815 NW_004955416 15179301 15183923 - 102022815 AGCD01017306;AGCD01017307;GBDI01162836;XR_260387;XR_260388 MODEL 9026497 protein-coding Pgrmc1 progesterone receptor membrane component 1 ENCODES a protein that exhibits heme binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN associative learning (ortholog); axon guidance (ortholog); heme biosynthetic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cell body (ortholog); mitochondrial outer membrane (ortholog); neuron projection (ortholog) NW_004955534 698895 706586 - 102013446 AGCD01070467;GBBH01003936;XM_005410449 XP_005410506 MODEL 8974163 pseudo LOC102017725 prefoldin subunit 6 pseudogene NW_004955592 408866 409682 - 102017725 AGCD01076312 MODEL 8701106 protein-coding Scimp SLP adaptor and CSK interacting membrane protein ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN cellular response to molecule of fungal origin (ortholog); positive regulation of cytokine production involved in immune response (ortholog); positive regulation of dendritic cell cytokine production (ortholog); ASSOCIATED WITH COVID-19 (ortholog); head and neck cancer (ortholog); FOUND IN filopodium (ortholog); immunological synapse (ortholog); leading edge membrane (ortholog) NW_004955467 10547706 10578355 - 102012180 AGCD01051575;AGCD01051576;AGCD01051577;GBDI01384955;XM_013522267;XM_013522268 XP_013377721;XP_013377722 MODEL 8788880 protein-coding Wnk4 WNK lysine deficient protein kinase 4 ENCODES a protein that exhibits chloride ion binding (ortholog); ion channel inhibitor activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); aldosterone secretion (ortholog); calcium ion homeostasis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Gitelman syndrome (ortholog); hypertension (ortholog); FOUND IN bicellular tight junction (ortholog); cell body (ortholog); cytoplasm (ortholog) NW_004955451 16593840 16606817 + 102028924 AGCD01043695;AGCD01043696;GBBH01026714;GBDF01163377;XM_013519256 XP_013374710 MODEL 8733562 protein-coding LOC102009757 ubiquinol-cytochrome-c reductase complex assembly factor 2 INVOLVED IN mitochondrial respiratory chain complex III assembly (ortholog); positive regulation of mitochondrial translation (ortholog); regulation of insulin secretion (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); mitochondrial complex III deficiency nuclear type 1 (ortholog); mitochondrial complex III deficiency nuclear type 7 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial matrix (ortholog) NW_004955437 2107475 2119892 - 102009757 AGCD01034260;GBDF01065831;XM_005389507 XP_005389564 MODEL 8997545 pseudo LOC102021079 RNA-binding protein EWS-like NW_004955404 18511209 18513013 - 102021079 AGCD01003618 MODEL 8822882 pseudo LOC102022820 olfactory receptor 1N1-like NW_004955419 5426901 5427851 + 102022820 AGCD01019809 MODEL 8834455 protein-coding Pip5k1b phosphatidylinositol-4-phosphate 5-kinase type 1 beta ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); INVOLVED IN phosphatidylinositol biosynthetic process (ortholog); phosphatidylinositol metabolic process (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; FOUND IN cytosol (ortholog); uropod (ortholog) NW_004955434 4020219 4315072 - 102008762 AGCD01032154;AGCD01032155;AGCD01032156;AGCD01032157;GBCE01043004;XM_005388578;XM_013516346;XM_013516347;XM_013516348;XM_013516349 XP_005388635;XP_013371800;XP_013371801;XP_013371802;XP_013371803 MODEL 8920903 pseudo LOC102013317 eukaryotic initiation factor 4A-I-like NW_004955428 6591052 6624236 - 102013317 AGCD01027743;AGCD01027744 MODEL 8999334 protein-coding Epha2 EPH receptor A2 ENCODES a protein that exhibits growth factor binding (ortholog); molecular function activator activity (ortholog); transmembrane receptor protein tyrosine kinase activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); axial mesoderm formation (ortholog); blood vessel development (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH cataract (ortholog); cataract 6 multiple types (ortholog); chromosome 1p36 deletion syndrome (ortholog); FOUND IN cell surface (ortholog); focal adhesion (ortholog); lamellipodium (ortholog) NW_004955527 2120447 2151932 + 102004197 AGCD01069422;AGCD01069423;GBDI01327302;XM_005409845 XP_005409902 MODEL 9068178 pseudo LOC102018080 olfactory receptor 51F2-like NW_004955414 20321335 20322268 + 102018080 AGCD01015368 MODEL 8966122 ncrna LOC102015097 uncharacterized LOC102015097 NW_004955413 31164764 31170120 - 102015097 AGCD01014620;GBDF01223958;XR_001232954 MODEL 8944768 ncrna LOC102019332 uncharacterized LOC102019332 NW_004955442 5088498 5127744 + 102019332 AGCD01037552;GBDF01212046;XR_262114 MODEL 8844144 protein-coding Krt222 keratin 222 NW_004955451 15156315 15164607 - 102016874 AGCD01043598;GBDF01016890;XM_005394366;XM_013519399 XP_005394423;XP_013374853 MODEL 8951452 protein-coding Plekhf1 pleckstrin homology and FYVE domain containing 1 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog); INVOLVED IN endosome organization (ortholog); positive regulation of autophagy (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN endosome (ortholog); lysosome (ortholog) NW_004955468 7934024 7943499 - 102012182 AGCD01052017;GBBH01126266;XM_005400111 XP_005400168 MODEL 39132464 snrna U6 U6 spliceosomal RNA 9030246 protein-coding Ppl periplakin INVOLVED IN regulation of antibacterial peptide production (ortholog); response to mechanical stimulus (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); Rubinstein-Taybi syndrome (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); plasma membrane (ortholog) NW_004955442 12581918 12627407 + 102029011 AGCD01037740;AGCD01037741;GBCE01133637;XM_005391258 XP_005391315 MODEL 8999662 ncrna LOC102018084 uncharacterized LOC102018084 NW_004955414 33063328 33066744 - 102018084 AGCD01015795;GBCB01039007;XR_001233137 MODEL 8896000 protein-coding Lman2 lectin, mannose binding 2 ENCODES a protein that exhibits carbohydrate binding (ortholog); D-mannose binding (ortholog); heat shock protein binding (ortholog); INVOLVED IN positive regulation of phagocytosis (ortholog); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ortholog); ASSOCIATED WITH Chromosome 5, Trisomy 5q (ortholog); Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN cell surface (ortholog); COPI-coated vesicle (ortholog); cytoplasmic vesicle (ortholog) NW_004955408 29581737 29597240 - 102023778 AGCD01008764;AGCD01008765;GBDI01019724;XM_005376426 XP_005376483 MODEL 8829933 protein-coding St3gal6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 ENCODES a protein that exhibits N-acetyllactosaminide alpha-2,3-sialyltransferase activity (ortholog); INVOLVED IN cellular response to interleukin-6 (ortholog); glycolipid biosynthetic process (ortholog); protein glycosylation (ortholog) NW_004955427 397870 450187 + 102013314 AGCD01026833;AGCD01026834;GBBH01132102;GBCQ01116419;XM_013515120 XP_013370574 MODEL 39133532 snrna U4 U4 spliceosomal RNA 8971569 protein-coding LOC102007129 cyclic nucleotide-binding domain-containing protein 2-like NW_004955488 6614698 6616169 - 102007129 AGCD01059662;XM_013504412 XP_013359866 MODEL 8777928 protein-coding Spag6 sperm associated antigen 6 FOUND IN axoneme (ortholog); microtubule cytoskeleton (ortholog); sperm principal piece (ortholog) NW_004955429 625601 662804 - 102024259 AGCD01028369;GBDI01128056;XM_005386859;XM_005386860;XM_013515392 XP_005386916;XP_005386917;XP_013370846 MODEL 8892214 protein-coding Rbm20 RNA binding motif protein 20 ENCODES a protein that exhibits pre-mRNA intronic binding (ortholog); RNA binding (ortholog); splicing factor binding (ortholog); INVOLVED IN heart formation (ortholog); negative regulation of mRNA splicing, via spliceosome (ortholog); positive regulation of RNA splicing (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrial fibrillation (ortholog); cardiac arrest (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); nucleus (ortholog) NW_004955485 590094 769604 - 102014785 AGCD01058456;AGCD01058457;GBCB01023246;XM_005403751;XM_005403752;XM_005403753;XM_013504116 XP_005403808;XP_005403809;XP_005403810;XP_013359570 MODEL 8778498 protein-coding LOC102017726 chromosome unknown open reading frame, human C20orf202 NW_004955596 429206 445151 + 102017726 AGCD01076517;AGCD01076518;AGCD01076519;XM_005414711 XP_005414768 MODEL 8991063 protein-coding Ppm1a protein phosphatase, Mg2+/Mn2+ dependent 1A ENCODES a protein that exhibits calmodulin-dependent protein phosphatase activity (ortholog); phosphoprotein phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN cellular response to transforming growth factor beta stimulus (ortholog); dephosphorylation (ortholog); N-terminal protein myristoylation (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; FOUND IN cytosol (ortholog); membrane (ortholog); neuron projection (ortholog) NW_004955466 9315227 9331213 - 102018273 AGCD01051034;GBCQ01042357;GBDF01218126;XM_013521996 XP_013377450 MODEL 8865178 protein-coding Tm4sf1 transmembrane 4 L six family member 1 INVOLVED IN blastocyst formation (ortholog); ASSOCIATED WITH aceruloplasminemia (ortholog); basal cell carcinoma (ortholog); glycogen storage disease XV (ortholog); FOUND IN plasma membrane (ortholog) NW_004955448 608724 617189 - 102019652 AGCD01041235;GBBH01034830;XM_005392998 XP_005393055 MODEL 8805922 ncrna LOC102021087 uncharacterized LOC102021087 NW_004955453 16394428 16442577 + 102021087 AGCD01044902;AGCD01044903;AGCD01044904;GBDF01083674;XR_001236196;XR_001236197;XR_001236198;XR_262753 MODEL 10251171 pseudo LOC106149943 retinol dehydrogenase 16-like NW_004955458 4670971 4690548 - 106149943 AGCD01047425;AGCD01047426;AGCD01047427;AGCD01047428;AGCD01047429;AGCD01047430 MODEL 8947356 protein-coding LOC102003850 putative vomeronasal receptor-like protein 4 NW_004955465 12732451 12749417 - 102003850 AGCD01050556;AGCD01050557;AGCD01050558;GBDF01114303;XM_005398941;XM_013521802;XM_013521803;XM_013521804;XM_013521805 XP_005398998;XP_013377256;XP_013377257;XP_013377258;XP_013377259 MODEL 9031716 pseudo LOC102006021 calcyclin-binding protein pseudogene NW_004955470 12066013 12067427 + 102006021 AGCD01052919 MODEL 8958005 pseudo LOC102013318 nucleolin-like NW_004955510 6049576 6050426 + 102013318 AGCD01066299 MODEL 8709435 protein-coding Pole DNA polymerase epsilon, catalytic subunit ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN base-excision repair, gap-filling (ortholog); DNA biosynthetic process (ortholog); DNA replication (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH ascending colon cancer (ortholog); astroblastoma (ortholog); breast cancer (ortholog); FOUND IN epsilon DNA polymerase complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955482 373467 418000 + 102019698 AGCD01057171;AGCD01057172;GBDF01088484;XM_005402950;XM_005402952;XM_013503642;XM_013503643 XP_005403007;XP_005403009;XP_013359096;XP_013359097 MODEL 9063518 protein-coding Rft1 RFT1 glycolipid translocator homolog INVOLVED IN dolichol-linked oligosaccharide biosynthetic process (ortholog); glycolipid translocation (ortholog); protein N-linked glycosylation (ortholog); ASSOCIATED WITH autoimmune lymphoproliferative syndrome type 3 (ortholog); congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation In (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955430 3055766 3096501 - 102029213 AGCD01029191;GBDI01215765;XM_005387364 XP_005387421 MODEL 9035886 protein-coding LOC102003851 olfactory receptor 150-like NW_004955412 24925251 24928447 + 102003851 AGCD01013131;XM_005378411 XP_005378468 MODEL 8966850 protein-coding Epha3 EPH receptor A3 ENCODES a protein that exhibits ephrin receptor activity (ortholog); GPI-linked ephrin receptor activity (ortholog); growth factor binding (ortholog); INVOLVED IN cell migration (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); cellular response to interleukin-1 (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH atrial fibrillation (ortholog); Fever (ortholog); pancreatic cancer (ortholog); FOUND IN actin cytoskeleton (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955407 4135671 4500900 - 102019666 AGCD01006872;AGCD01006873;AGCD01006874;AGCD01006875;AGCD01006876;AGCD01006877;AGCD01006878;AGCD01006879;AGCD01006880;AGCD01006881;GBBH01045871;XM_005375517;XM_005375518 XP_005375574;XP_005375575 MODEL 8956473 ncrna LOC102005690 uncharacterized LOC102005690 NW_004955413 2434741 2435420 - 102005690 AGCD01013546;GBDF01017398;XR_260051 MODEL 8858591 protein-coding Bcorl1 BCL6 corepressor like 1 ASSOCIATED WITH adenoid cystic carcinoma (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955473 4990974 5054829 - 102010992 AGCD01053963;AGCD01053964;GBCQ01012577;XM_005401251;XM_005401252;XM_005401253;XM_013523072;XM_013523073;XM_013523074;XM_013523075 XP_005401308;XP_005401309;XP_005401310;XP_013378526;XP_013378527;XP_013378528;XP_013378529 MODEL 39132465 snrna U6 U6 spliceosomal RNA 8825299 protein-coding Sipa1 signal-induced proliferation-associated 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN cellular response to water deprivation (ortholog); regulation of cell cycle (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; vasopressin signaling pathway; vasopressin signaling pathway via receptor type 2; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Autoinflammatory Disease, Familial, Behcet-Like-3 (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955422 19615440 19627195 - 102003459 AGCD01023024;GBDJ01018460;XM_005384470;XM_013513855;XM_013513856;XM_013513857;XM_013513858 XP_005384527;XP_013369309;XP_013369310;XP_013369311;XP_013369312 MODEL 39133038 snrna U6 U6 spliceosomal RNA 9020712 protein-coding LOC102008598 keratin-associated protein 10-7-like NW_004955407 41534110 41537176 - 102008598 AGCD01007870;XM_013505446 XP_013360900 MODEL 39133533 snrna U4 U4 spliceosomal RNA 10251142 protein-coding Ndufc1 NADH:ubiquinone oxidoreductase subunit C1 FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955428 4343702 4347001 + 106148745 AGCD01027680;GBDF01052293;XM_013515244 XP_013370698 MODEL 8951238 ncrna LOC102007135 uncharacterized LOC102007135 NW_004955425 7696784 7698489 - 102007135 AGCD01025391;XR_261135 MODEL 39133039 snrna U6 U6 spliceosomal RNA 9064460 protein-coding Rbm22 RNA binding motif protein 22 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); pre-mRNA binding (ortholog); U6 snRNA binding (ortholog); INVOLVED IN cellular response to xenobiotic stimulus (ortholog); mRNA cis splicing, via spliceosome (ortholog); positive regulation of protein export from nucleus (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955415 3895272 3905801 + 102013500 AGCD01015958;GBDF01084793;XM_005380568 XP_005380625 MODEL 9013640 pseudo LOC102024836 SLAIN motif-containing protein 2 pseudogene NW_004955432 4660450 4662367 - 102024836 AGCD01030733 MODEL 10319509 protein-coding LOC106149944 UPF0317 protein KRH_21160-like NW_004955458 9381874 9396866 + 106149944 AGCD01047640;GBCE01061454;XM_013520806 XP_013376260 MODEL 8806420 protein-coding Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); INVOLVED IN axonogenesis (ortholog); phosphatidylinositol biosynthetic process (ortholog); phosphatidylinositol metabolic process (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; E-cadherin signaling pathway; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH genetic disease (ortholog); lethal congenital contracture syndrome 3 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); endosome membrane (ortholog); glutamatergic synapse (ortholog) NW_004955495 5573549 5616957 - 102006681 AGCD01062014;AGCD01062015;GBDI01125804;XM_005405880;XM_013505222;XM_013505223;XM_013505224;XM_013505225 XP_005405937;XP_013360676;XP_013360677;XP_013360678;XP_013360679 MODEL 8927481 protein-coding Ryr2 ryanodine receptor 2 ENCODES a protein that exhibits calcium channel activity (ortholog); calcium-induced calcium release activity (ortholog); calmodulin binding (ortholog); INVOLVED IN calcium ion transmembrane import into cytosol (ortholog); calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); arrhythmogenic right ventricular dysplasia 1 (ortholog); arrhythmogenic right ventricular dysplasia 9 (ortholog); FOUND IN A band (ortholog); calcium channel complex (ortholog); extrinsic component of cytoplasmic side of plasma membrane (ortholog) NW_004955492 2647597 3275512 - 102016064 AGCD01060680;AGCD01060681;AGCD01060682;AGCD01060683;AGCD01060684;AGCD01060685;AGCD01060686;AGCD01060687;AGCD01060688;AGCD01060689;AGCD01060690;AGCD01060691;AGCD01060692;AGCD01060693;GBCE01082492;GBDJ01219452;XM_013504700;XM_013504701;XM_013504702;XM_013504703;XM_013504704;XM_013504705;XM_013504706 XP_013360154;XP_013360155;XP_013360156;XP_013360157;XP_013360158;XP_013360159;XP_013360160 MODEL 8819718 protein-coding LOC102019333 28S ribosomal protein S18c, mitochondrial NW_004955552 805450 806106 - 102019333 AGCD01072740;XM_005412189 XP_005412246 MODEL 8965077 protein-coding Plekhf2 pleckstrin homology and FYVE domain containing 2 ASSOCIATED WITH Klippel-Feil syndrome 1 (ortholog); FOUND IN transport vesicle (ortholog) NW_004955417 11261712 11282038 + 102003868 AGCD01018128;AGCD01018129;GBDF01183993;XM_005381827 XP_005381884 MODEL 8725117 protein-coding Rftn1 raftlin, lipid raft linker 1 ENCODES a protein that exhibits double-stranded RNA binding (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); dsRNA transport (ortholog); membrane raft assembly (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); glaucoma (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); membrane raft (ortholog) NW_004955430 8605057 8801187 - 102028668 AGCD01029390;AGCD01029391;AGCD01029392;AGCD01029393;GBDF01187691;GBDJ01316097;XM_013515694 XP_013371148 MODEL 8844207 protein-coding Rala RAS like proto-oncogene A ENCODES a protein that exhibits ATPase binding (ortholog); Edg-2 lysophosphatidic acid receptor binding (ortholog); GDP binding (ortholog); INVOLVED IN establishment of protein localization to mitochondrion (ortholog); membrane raft localization (ortholog); neural tube closure (ortholog); ASSOCIATED WITH genetic disease (ortholog); Greig cephalopolysyndactyly syndrome (ortholog); HIATT-NEU-COOPER NEURODEVELOPMENTAL SYNDROME (ortholog); FOUND IN cell surface (ortholog); cleavage furrow (ortholog); endocytic vesicle (ortholog) NW_004955460 3789136 3853315 - 102018164 AGCD01048422;GBDF01124362;XM_005397729;XM_005397730;XR_263026 XP_005397786;XP_005397787 MODEL 8842102 protein-coding LOC102003853 myosin-3 ENCODES a protein that exhibits actin filament binding (ortholog); ATP hydrolysis activity (ortholog); microfilament motor activity (ortholog); INVOLVED IN ATP metabolic process (ortholog); skeletal muscle contraction (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); Arthrogryposis, Impaired Intellectual Development, and Seizures (ortholog); congenital myopathy 6 (ortholog); FOUND IN contractile muscle fiber (ortholog); myosin complex (ortholog) NW_004955467 6561609 6583228 + 102003853 AGCD01051416;AGCD01051417;GBDF01285104;XM_005399362 XP_005399419 MODEL 8856089 pseudo LOC102009017 60S ribosomal protein L14 pseudogene NW_004955408 1564719 1565405 - 102009017 AGCD01007965 MODEL 8727472 protein-coding LOC102009764 keratin, type II cytoskeletal 75 NW_004955547 2773524 2784448 - 102009764 AGCD01072294;GBCB01107480;XM_005411943 XP_005412000 MODEL 8777879 protein-coding Qrfpr pyroglutamylated RFamide peptide receptor ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH bone structure disease (ortholog); neurodevelopmental disorder with hearing loss, seizures, and brain abnormalities (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN non-motile cilium (ortholog) NW_004955428 19238479 19290510 + 102020145 AGCD01028088;AGCD01028089;AGCD01028090;AGCD01028091;XM_005386788 XP_005386845 MODEL 8953516 pseudo LOC102008599 ATP synthase F(0) complex subunit C2, mitochondrial pseudogene NW_004955408 4475183 4478730 - 102008599 AGCD01008113 MODEL 8841831 protein-coding Bcr BCR activator of RhoGEF and GTPase ENCODES a protein that exhibits enzyme binding (ortholog); GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); activation of GTPase activity (ortholog); brain development (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); Blast Crisis (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955455 7598794 7727386 + 102026502 AGCD01045862;GBDF01188592;GBDI01355626;XM_005396371 XP_005396428 MODEL 8836957 protein-coding LOC102017730 UPF0577 protein KIAA1324-like homolog NW_004955621 163161 230801 + 102017730 AGCD01077376;AGCD01077377;GBDF01190085;GBDK01420995;XM_013510156 XP_013365610 MODEL 8942661 protein-coding Sytl4 synaptotagmin like 4 ENCODES a protein that exhibits neurexin family protein binding (ortholog); phospholipid binding (ortholog); INVOLVED IN exocytosis (ortholog); insulin secretion (ortholog); lysosome localization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); developmental and epileptic encephalopathy 9 (ortholog); FOUND IN apical plasma membrane (ortholog); endosome (ortholog); plasma membrane (ortholog) NW_004955503 6821263 6899983 - 102021371 AGCD01064770;AGCD01064771;AGCD01064772;AGCD01064773;AGCD01064774;AGCD01064775;GBCQ01013250;XM_005406935 XP_005406992 MODEL 8745406 protein-coding Plekhg1 pleckstrin homology and RhoGEF domain containing G1 ASSOCIATED WITH chromosome 6q24-q25 deletion syndrome (ortholog); nicotine dependence (ortholog); prostate cancer (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955439 10636444 10755814 - 102004645 AGCD01035887;GBCE01021171;XM_005390587;XM_013517387;XM_013517388 XP_005390644;XP_013372841;XP_013372842 MODEL 8985349 protein-coding Sipa1l1 signal induced proliferation associated 1 like 1 ENCODES a protein that exhibits actin filament binding (ortholog); ephrin receptor binding (ortholog); protein kinase binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); activation of GTPase activity (ortholog); ephrin receptor signaling pathway (ortholog); ASSOCIATED WITH diastolic heart failure (ortholog); juvenile rheumatoid arthritis (ortholog); Weight Gain (ortholog); FOUND IN actin cytoskeleton (ortholog); dendritic spine (ortholog); glutamatergic synapse (ortholog) NW_004955523 3545807 3908329 - 102005837 AGCD01068616;AGCD01068617;AGCD01068618;AGCD01068619;AGCD01068620;AGCD01068621;AGCD01068622;GBDF01128061;XM_005409444;XM_005409446;XM_005409448;XM_005409449;XM_005409450;XM_013507169;XR_264641 XP_005409501;XP_005409503;XP_005409505;XP_005409506;XP_005409507;XP_013362623 MODEL 8856906 ncrna LOC102012076 uncharacterized LOC102012076 NW_004955412 13025707 13029033 - 102012076 AGCD01012827;GBDF01049222;XR_259987 MODEL 8940567 protein-coding Slc35a5 solute carrier family 35 member A5 ENCODES a protein that exhibits pyrimidine nucleotide-sugar transmembrane transporter activity (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Monoclonal B-Cell Lymphocytosis (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955427 12906650 12940419 + 102026997 AGCD01027230;GBDF01126546;XM_005386388;XM_005386389;XM_013515192;XR_261261;XR_261262;XR_261263;XR_261265;XR_261266 XP_005386445;XP_005386446;XP_013370646 MODEL 8702276 pseudo LOC102008196 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 pseudogene NW_004955410 6003925 6016151 - 102008196 AGCD01010695 MODEL 8706978 protein-coding Sfrp4 secreted frizzled related protein 4 ENCODES a protein that exhibits Wnt-protein binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); decidualization (ortholog); female pregnancy (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); Experimental Arthritis (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular space (ortholog) NW_004955460 5654187 5666475 + 102026611 AGCD01048456;GBDJ01005445;XM_005397748 XP_005397805 MODEL 8893524 protein-coding LOC102006024 ovomucoid-like NW_004955415 5904647 5909835 - 102006024 AGCD01016002;GBDF01085593;XM_005380639 XP_005380696 MODEL 8856428 protein-coding Rbm23 RNA binding motif protein 23 INVOLVED IN positive regulation of DNA-templated transcription (ortholog); regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Specific Granule Deficiency (ortholog) NW_004955409 37384872 37392896 + 102021104 AGCD01010511;GBDF01306118;XM_013510245 XP_013365699 MODEL 8716895 protein-coding LOC102017731 arylamine N-acetyltransferase 2-like NW_004955403 42305517 42311914 + 102017731 AGCD01002751;GBDJ01116357;XM_005373603 XP_005373660 MODEL 8863415 protein-coding LOC102018085 protein FAM205A-like NW_004955472 1304677 1310702 + 102018085 AGCD01053385;GBDF01086556;XM_005401038;XM_005401039;XM_005401040 XP_005401095;XP_005401096;XP_005401097 MODEL 8965633 pseudo LOC102023882 peroxisomal membrane protein 4 pseudogene NW_004955464 3326144 3336507 + 102023882 AGCD01049973 MODEL 8890226 protein-coding Trex2 three prime repair exonuclease 2 ENCODES a protein that exhibits 3'-5'-DNA exonuclease activity (ortholog); DNA binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN DNA metabolic process (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog) NW_004955580 207903 209426 - 102010534 AGCD01075591;GBDF01123808;XM_005414119 XP_005414176 MODEL 8803378 protein-coding Sipa1l2 signal induced proliferation associated 1 like 2 INVOLVED IN presynaptic signal transduction (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); High Myopia (ortholog); parathyroid carcinoma (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density, intracellular component (ortholog); presynapse (ortholog) NW_004955492 6611430 6709016 + 102004492 AGCD01060770;AGCD01060771;GBDF01252947;XM_013504726;XM_013504727;XM_013504728;XM_013504729 XP_013360180;XP_013360181;XP_013360182;XP_013360183 MODEL 15036840 trna Trnar-gcg transfer RNA arginine (anticodon GCG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978838 8887927 pseudo LOC102006025 copine-8 pseudogene NW_004955474 8226314 8227620 + 102006025 AGCD01054546 MODEL 8742025 protein-coding LOC102005691 NKG2-D type II integral membrane protein ENCODES a protein that exhibits identical protein binding (ortholog); protein phosphatase binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN natural killer cell mediated cytotoxicity (ortholog); negative regulation of GTPase activity (ortholog); negative regulation of natural killer cell chemotaxis (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955413 7489158 7503014 + 102005691 AGCD01013822;GBDK01000444;XM_013511691;XM_013511692;XR_260066 XP_013367145;XP_013367146 MODEL 8917169 protein-coding Epha4 EPH receptor A4 ENCODES a protein that exhibits DH domain binding (ortholog); ephrin receptor binding (ortholog); GPI-linked ephrin receptor activity (ortholog); INVOLVED IN adherens junction organization (ortholog); adult walking behavior (ortholog); axon guidance (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Alzheimer's disease (ortholog); Brain Hypoxia-Ischemia (ortholog); Brain Injuries (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); axonal growth cone (ortholog) NW_004955453 12099800 12240199 + 102026827 AGCD01044828;AGCD01044829;GBBH01055701;XM_005395504 XP_005395561 MODEL 9017815 ncrna LOC102023885 uncharacterized LOC102023885 NW_004955412 8627116 8640467 - 102023885 AGCD01012720;GBDF01177731;XR_259982 MODEL 9035769 protein-coding Rbm24 RNA binding motif protein 24 ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); mRNA 3'-UTR binding (ortholog); mRNA CDS binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); DNA damage response (ortholog); endocardial cushion development (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955483 8705533 8716772 - 102024340 AGCD01057842;GBDI01258799;XM_005403407;XM_005403408 XP_005403464;XP_005403465 MODEL 8914959 ncrna LOC102015100 uncharacterized LOC102015100 NW_004955471 2514798 2534812 - 102015100 AGCD01053016;AGCD01053017;AGCD01053018;AGCD01053019;GBCE01170669;XR_263515 MODEL 39133040 snrna U6 U6 spliceosomal RNA 9062877 protein-coding Ndufc2 NADH:ubiquinone oxidoreductase subunit C2 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); negative regulation of cellular process (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH intellectual disability (ortholog); mitochondrial metabolism disease (ortholog); Nuclear Type Mitochondrial Complex I Deficiency 36 (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955414 13867880 13878040 + 102006118 AGCD01015123;GBDF01236739;XM_005379822 XP_005379879 MODEL 8828444 protein-coding LOC102021088 ly-6/neurotoxin-like protein 1 NW_004955454 1461378 1467194 - 102021088 AGCD01044969;GBBH01121655;XM_005395741;XM_005395742;XM_013520254;XM_013520255;XM_013520256 XP_005395798;XP_005395799;XP_013375708;XP_013375709;XP_013375710 MODEL 8902864 protein-coding LOC102008603 forkhead box protein L1 NW_004955460 8202937 8204916 + 102008603 AGCD01048513;GBDF01028920;XM_005397773 XP_005397830 MODEL 8901854 protein-coding LOC102013325 putative spermatogenesis-associated protein 31D4 NW_004955432 3999312 4004493 + 102013325 AGCD01030686;GBDF01049444;XM_005387970;XM_005387971 XP_005388027;XP_005388028 MODEL 8908683 protein-coding Sytl5 synaptotagmin like 5 INVOLVED IN exocytosis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Dwarfism (ortholog); Laterality Defects, Autosomal Dominant (ortholog) NW_004955601 76647 210198 + 102026928 AGCD01076746;AGCD01076747;GBDI01057595;XM_005414815 XP_005414872 MODEL 39133041 snrna U6 U6 spliceosomal RNA 8815608 protein-coding Ppm1l protein phosphatase, Mg2+/Mn2+ dependent 1L ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN cell surface receptor protein serine/threonine kinase signaling pathway (ortholog); MAPK cascade (ortholog); ASSOCIATED WITH obesity (ortholog) NW_004955448 11265988 11548258 + 102006184 AGCD01041520;AGCD01041521;AGCD01041522;AGCD01041523;AGCD01041524;AGCD01041525;AGCD01041526;AGCD01041527;GBCE01057334;GBCE01057335;XM_005393125 XP_005393182 MODEL 10296302 ncrna LOC106149116 uncharacterized LOC106149116 NW_004955437 16020548 16021231 + 106149116 AGCD01034698;XR_001235079 MODEL 8895838 protein-coding Lman2l lectin, mannose binding 2 like INVOLVED IN protein transport (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 69 (ortholog); autosomal recessive intellectual developmental disorder 52 (ortholog); bipolar disorder (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955470 4080723 4100662 - 102019161 AGCD01052717;AGCD01052718;GBDF01157284;XM_005400667;XM_005400668 XP_005400724;XP_005400725 MODEL 8850047 protein-coding Scin scinderin INVOLVED IN actin filament capping (ortholog); actin filament severing (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN brush border (ortholog); protein-containing complex (ortholog) NW_004955410 16286131 16358286 + 102016989 AGCD01010956;AGCD01010957;AGCD01010958;GBBH01031222;GBDJ01084886;XM_005377322 XP_005377379 MODEL 9038218 protein-coding Wnt1 Wnt family member 1 ENCODES a protein that exhibits cytokine activity (ortholog); protein domain specific binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); astrocyte-dopaminergic neuron signaling (ortholog); bone development (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); atherosclerosis (ortholog); breast cancer (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955500 7797063 7811142 + 102010502 AGCD01063947;AGCD01063948;AGCD01063949;GBDF01147903;XM_005406674 XP_005406731 MODEL 9055404 protein-coding Spag7 sperm associated antigen 7 ASSOCIATED WITH congenital myasthenic syndrome 4A (ortholog); spastic ataxia 2 (ortholog) NW_004955467 10369493 10374540 - 102024205 AGCD01051561;GBDF01047089;XM_005399632 XP_005399689 MODEL 10315942 pseudo LOC106149117 10 kDa heat shock protein, mitochondrial-like NW_004955437 16874517 16875860 - 106149117 AGCD01034716 MODEL 8974799 protein-coding Rmnd5a required for meiotic nuclear division 5 homolog A ASSOCIATED WITH immunodeficiency 116 (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955424 983275 1034160 - 102015736 AGCD01024227;GBDI01072370;XM_005385391 XP_005385448 MODEL 8805499 protein-coding Ppm1b protein phosphatase, Mg2+/Mn2+ dependent 1B ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN N-terminal protein myristoylation (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of defense response to virus (ortholog); ASSOCIATED WITH holoprosencephaly 2 (ortholog); hypotonia-cystinuria syndrome (ortholog); Lynch syndrome (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); nucleolus (ortholog) NW_004955441 11276525 11338586 + 102029903 AGCD01037107;GBDF01043427;GBDF01043428;XM_005390941 XP_005390998 MODEL 8848541 protein-coding Slc7a8 solute carrier family 7 member 8 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); antiporter activity (ortholog); glycine transmembrane transporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); amino acid transport (ortholog); glycine transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); cataract (ortholog); Dwarfism (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955409 37119189 37171300 + 102023671 AGCD01010497;AGCD01010498;GBDJ01075034;XM_013510441;XM_013510442;XM_013510443 XP_013365895;XP_013365896;XP_013365897 MODEL 8796358 protein-coding Tm4sf18 transmembrane 4 L six family member 18 ASSOCIATED WITH aceruloplasminemia (ortholog); glycogen storage disease XV (ortholog) NW_004955448 550074 569045 - 102019121 AGCD01041233;GBDI01339659;XM_005392995;XM_013518686;XM_013518687 XP_005393052;XP_013374140;XP_013374141 MODEL 8914831 protein-coding Sfxn2 sideroflexin 2 INVOLVED IN mitochondrial transmembrane transport (ortholog); ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); nevoid basal cell carcinoma syndrome (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955485 7716916 7732122 - 102012098 AGCD01058672;GBCE01065073;XM_005403827;XM_005403828;XM_013504027;XM_013504028;XM_013504029;XM_013504030;XM_013504031;XM_013504033;XM_013504034;XM_013504035;XM_013504036;XR_001231068 XP_005403884;XP_005403885;XP_013359481;XP_013359482;XP_013359483;XP_013359484;XP_013359485;XP_013359487;XP_013359488;XP_013359489;XP_013359490 MODEL 9029494 ncrna LOC102015103 uncharacterized LOC102015103 NW_004955415 4079080 4088160 + 102015103 AGCD01015964;GBDI01327867;XR_260263;XR_260264 MODEL 8766946 pseudo LOC102012078 ETS translocation variant 5 pseudogene NW_004955412 6032104 6035073 + 102012078 AGCD01012664 MODEL 9019832 pseudo LOC102008200 septin-2 pseudogene NW_004955463 231431 232195 - 102008200 AGCD01049478 MODEL 9012823 protein-coding Plekhg2 pleckstrin homology and RhoGEF domain containing G2 INVOLVED IN regulation of actin filament polymerization (ortholog); ASSOCIATED WITH Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog) NW_004955468 138262 149480 - 102022068 AGCD01051683;AGCD01051684;GBBH01065682;XM_013522376 XP_013377830 MODEL 8999921 protein-coding LOC102024841 microtubule-associated protein 1S NW_004955524 708721 710602 - 102024841 AGCD01068695;GBCB01099826;GBCQ01150488;XM_013507233 XP_013362687 MODEL 8788048 ncrna LOC102021095 uncharacterized LOC102021095 NW_004955407 37937136 37939739 - 102021095 AGCD01007789;GBDF01111807;XR_259621 MODEL 8782463 protein-coding Sfxn3 sideroflexin 3 ENCODES a protein that exhibits L-serine transmembrane transporter activity (ortholog); INVOLVED IN mitochondrial transmembrane transport (ortholog); one-carbon metabolic process (ortholog); serine import into mitochondrion (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955485 9157657 9165243 - 102028972 AGCD01058748;AGCD01058749;GBBH01035640;GBBH01035644;XM_005403880 XP_005403937 MODEL 8947218 ncrna LOC102019334 uncharacterized LOC102019334 NW_004955555 524438 543781 - 102019334 AGCD01073035;AGCD01073036;GBDF01250812;XR_001232299;XR_264950;XR_264952 MODEL 8791037 ncrna LOC102008203 uncharacterized LOC102008203 NW_004955465 240199 264436 + 102008203 AGCD01050306;GBDF01083705;XR_001236725;XR_001236726;XR_001236727;XR_001236728;XR_001236729;XR_001236730;XR_263227 MODEL 8995179 protein-coding Ryr3 ryanodine receptor 3 ENCODES a protein that exhibits calcium-induced calcium release activity (ortholog); intracellularly gated calcium channel activity (ortholog); ryanodine-sensitive calcium-release channel activity (ortholog); INVOLVED IN calcium ion transport (ortholog); intracellular calcium ion homeostasis (ortholog); negative regulation of cytosolic calcium ion concentration (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH amenorrhea (ortholog); arthrogryposis multiplex congenita (ortholog); Bloom syndrome (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); junctional membrane complex (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955416 712506 1260111 - 102024222 AGCD01016819;AGCD01016820;AGCD01016821;AGCD01016822;AGCD01016823;AGCD01016824;AGCD01016825;AGCD01016826;AGCD01016827;AGCD01016828;AGCD01016829;AGCD01016830;AGCD01016831;GBDJ01280043;XM_005381167 XP_005381224 MODEL 8914418 pseudo LOC102024842 tudor domain-containing protein 3-like NW_004955435 10887502 10894046 - 102024842 AGCD01033101 MODEL 8793096 protein-coding LOC102009018 up-regulator of cell proliferation NW_004955456 7974915 7999963 + 102009018 AGCD01046440;AGCD01046441;AGCD01046442;AGCD01046443;GBBH01208050;GBCE01137430;XM_013520521 XP_013375975 MODEL 8979095 protein-coding LOC102006026 cystatin-13-like NW_004955415 30473505 30482358 + 102006026 AGCD01016664;GBDF01008193;XM_005380973 XP_005381030 MODEL 8810417 ncrna LOC102008204 uncharacterized LOC102008204 NW_004955412 4776167 4820984 - 102008204 AGCD01012604;AGCD01012605;AGCD01012606;GBDF01156686;XR_001232850;XR_001232851;XR_259970;XR_259971 MODEL 8865960 protein-coding Krt23 keratin 23 NW_004955451 15346925 15360127 - 102020873 AGCD01043605;GBCE01032364;XM_005394377 XP_005394434 MODEL 8907953 protein-coding LOC102023888 histone H2A type 2-A NW_004955413 864605 865008 - 102023888 AGCD01013492;GBDF01004921;GBDJ01004178;XM_005378714 XP_005378771 MODEL 8817967 protein-coding LOC102009019 glycosylation-dependent cell adhesion molecule 1-like NW_004955458 1841699 1848240 - 102009019 AGCD01047206;GBCB01051309;XM_005397231 XP_005397288 MODEL 8872948 protein-coding S100a1 S100 calcium binding protein A1 ENCODES a protein that exhibits ATPase binding (ortholog); calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of sprouting angiogenesis (ortholog); positive regulation of voltage-gated calcium channel activity (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN A band (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955545 276868 281015 + 102016098 AGCD01071781;GBDI01063284;XM_005411426 XP_005411483 MODEL 8772923 protein-coding Slc7a9 solute carrier family 7 member 9 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); antiporter activity (ortholog); broad specificity neutral L-amino acid:basic L-amino acid antiporter activity (ortholog); INVOLVED IN amino acid transport (ortholog); L-cystine transport (ortholog); neutral amino acid transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH cystinuria (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); plasma membrane (ortholog) NW_004955468 5112057 5201272 + 102027509 AGCD01051949;AGCD01051950;AGCD01051951;AGCD01051952;AGCD01051953;AGCD01051954;AGCD01051955;AGCD01051956;AGCD01051957;AGCD01051958;AGCD01051959;GBCQ01035248;GBDF01209757;XM_005400078 XP_005400135 MODEL 8794617 protein-coding LOC102006031 zinc finger protein 14-like NW_004955417 31556784 31573000 - 102006031 AGCD01018655;AGCD01018656;GBDJ01003802;XM_013512775 XP_013368229 MODEL 8995172 protein-coding Tssk3 testis specific serine kinase 3 ENCODES a protein that exhibits magnesium ion binding (ortholog); manganese ion binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN spermatid development (ortholog); spermatogenesis (ortholog); FOUND IN sperm flagellum (ortholog) NW_004955452 10690847 10693660 + 102022250 AGCD01044288;AGCD01044289;GBBH01077856;GBDF01000050;XM_005395066 XP_005395123 MODEL 9064356 pseudo LOC102008604 calcyclin-binding protein pseudogene NW_004955460 11101580 11102535 - 102008604 AGCD01048629;XR_263056 MODEL 8908401 protein-coding LOC102015105 zinc finger protein 709-like NW_004955415 31585334 31630325 + 102015105 AGCD01016684;AGCD01016685;AGCD01016686;AGCD01016687;AGCD01016688;AGCD01016689;AGCD01016690;AGCD01016691;GBDI01052670;XM_005381004;XM_005381005;XM_013512376 XP_005381061;XP_005381062;XP_013367830 MODEL 9026929 protein-coding Ndufs1 NADH:ubiquinone oxidoreductase core subunit S1 ENCODES a protein that exhibits electron transfer activity (ortholog); NADH dehydrogenase (ubiquinone) activity (ortholog); INVOLVED IN cellular respiration (ortholog); mitochondrial electron transport, NADH to ubiquinone (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH cystic fibrosis (ortholog); Disease Progression (ortholog); genetic disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955457 8838216 8879059 + 102017100 AGCD01046919;GBDF01051033;XM_005396998 XP_005397055 MODEL 8989480 protein-coding Krt24 keratin 24 NW_004955451 15187535 15191685 - 102017416 AGCD01043600;GBCE01081116;XM_005394368 XP_005394425 MODEL 9051365 protein-coding Rftn2 raftlin family member 2 INVOLVED IN dsRNA transport (ortholog); response to exogenous dsRNA (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955403 2982753 3030594 + 102013674 AGCD01001744;AGCD01001745;GBDF01055374;XM_005373263;XR_001233175 XP_005373320 MODEL 39133042 snrna U6 U6 spliceosomal RNA 8854816 protein-coding Sp1 Sp1 transcription factor ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN cellular response to estrogen stimulus (ortholog); cellular response to insulin stimulus (ortholog); cellular response to wortmannin (ortholog); PARTICIPATES IN forkhead class A signaling pathway; hypoxia inducible factor pathway; interleukin-4 signaling pathway; ASSOCIATED WITH Carotid Artery Injuries (ortholog); Colorectal Neoplasms (ortholog); Disease Progression (ortholog); FOUND IN chromatin (ortholog); euchromatin (ortholog); nucleoplasm (ortholog) NW_004955458 644435 677360 + 102020425 AGCD01047144;AGCD01047145;AGCD01047146;AGCD01047147;GBCE01004928;XM_005397176;XM_013520955;XM_013520956 XP_005397233;XP_013376409;XP_013376410 MODEL 8734564 pseudo LOC102023519 microtubule-associated protein 9-like NW_004955435 7164130 7166416 + 102023519 AGCD01032948 MODEL 8773909 protein-coding LOC102009769 olfactory receptor 7G2-like NW_004955563 256431 260592 + 102009769 AGCD01074056;AGCD01074057;XM_005413198 XP_005413255 MODEL 8939356 protein-coding LOC102003857 mediator of RNA polymerase II transcription subunit 6-like NW_004955413 23892506 23893445 - 102003857 AGCD01014339;XM_005379202;XM_013511365 XP_005379259;XP_013366819 MODEL 39133534 snrna U4 U4 spliceosomal RNA 8834295 protein-coding LOC102006032 ankyrin repeat and KH domain-containing protein 1 NW_004955418 134451 259259 - 102006032 AGCD01018668;AGCD01018669;AGCD01018670;GBDI01137461;XM_005382032;XM_005382034;XM_005382037;XM_013512890;XM_013512892;XM_013512893;XM_013512894;XM_013512895;XM_013512896;XM_013512897 XP_005382089;XP_005382091;XP_005382094;XP_013368344;XP_013368346;XP_013368347;XP_013368348;XP_013368349;XP_013368350;XP_013368351 MODEL 8739900 protein-coding Qrich1 glutamine rich 1 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN endoplasmic reticulum unfolded protein response (ortholog); integrated stress response signaling (ortholog); intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); FOUND IN nucleus (ortholog) NW_004955532 1052174 1092211 - 102005298 AGCD01070164;AGCD01070165;GBDF01081240;XM_005410175;XM_005410176;XM_013507580;XM_013507581 XP_005410232;XP_005410233;XP_013363034;XP_013363035 MODEL 8776082 protein-coding Wnt10a Wnt family member 10A ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); epidermis morphogenesis (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); Arthralgia (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog) NW_004955453 14528373 14540801 - 102030594 AGCD01044868;AGCD01044869;GBDJ01300231;XM_005395620 XP_005395677 MODEL 8908417 protein-coding Pgrmc2 progesterone receptor membrane component 2 ENCODES a protein that exhibits heme binding (ortholog); heme transmembrane transporter activity (ortholog); INVOLVED IN adipose tissue development (ortholog); heme transport (ortholog); ASSOCIATED WITH Hirschsprung's disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); glutamatergic synapse (ortholog); nuclear envelope (ortholog) NW_004955428 13260915 13278656 + 102015550 AGCD01027946;AGCD01027947;GBBH01118701;GBDF01122101;XM_013515321 XP_013370775 MODEL 8865432 protein-coding Rbm25 RNA binding motif protein 25 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN regulation of alternative mRNA splicing, via spliceosome (ortholog); regulation of apoptotic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN nuclear speck (ortholog) NW_004955523 2213766 2270417 - 102029658 AGCD01068560;AGCD01068561;GBDJ01126912;XM_005409430;XM_013507153 XP_005409487;XP_013362607 MODEL 8714543 pseudo LOC102007462 vesicle-associated membrane protein 8 pseudogene NW_004955434 10962508 10964570 + 102007462 AGCD01032368 MODEL 8992036 protein-coding Slc35b1 solute carrier family 35 member B1 ENCODES a protein that exhibits ATP:ADP antiporter activity (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955451 11870771 11877149 + 102023424 AGCD01043367;GBDF01050591;XM_005394207 XP_005394264 MODEL 8792317 protein-coding Sfrp5 secreted frizzled related protein 5 INVOLVED IN convergent extension involved in axis elongation (ortholog); digestive tract morphogenesis (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog) NW_004955507 3836607 3841910 - 102007576 AGCD01065638;GBDI01216661;XM_005407640 XP_005407697 MODEL 8903879 protein-coding Pgs1 phosphatidylglycerophosphate synthase 1 PARTICIPATES IN cardiolipin biosynthetic pathway; glycerophospholipid metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); High Myopia (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN endoplasmic reticulum (ortholog); mitochondrion (ortholog) NW_004955506 4160546 4203474 - 102006798 AGCD01065326;GBDK01230748;XM_005407376;XM_013506038 XP_005407433;XP_013361492 MODEL 8832071 trna Trnar-ucg transfer RNA arginine (anticodon UCG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955483;NW_004955483;NW_004955416;NW_004955553;NW_004955553 745122;769025;15772231;1885684;1885407 745194;769097;15772303;1885756;1885479 -;-;-;+;- 101978837 AGCD01017343;AGCD01057629;AGCD01057630;AGCD01072903 MODEL 8997349 protein-coding Syvn1 synoviolin 1 ENCODES a protein that exhibits ATPase binding (ortholog); DNA-binding transcription factor binding (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN ERAD pathway (ortholog); immature B cell differentiation (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); epilepsy (ortholog); glycogen storage disease V (ortholog); FOUND IN Derlin-1 retrotranslocation complex (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum quality control compartment (ortholog) NW_004955422 20067933 20074947 + 102014912 AGCD01023064;GBDF01047250;XM_005384510;XM_005384511;XM_005384512;XM_013514056 XP_005384567;XP_005384568;XP_005384569;XP_013369510 MODEL 8901801 protein-coding Lmbr1 limb development membrane protein 1 INVOLVED IN embryonic digit morphogenesis (ortholog); ASSOCIATED WITH acheiropody (ortholog); autistic disorder (ortholog); genetic disease (ortholog) NW_004955491 9171462 9217996 - 102007669 AGCD01060625;GBDF01053045;GBDJ01006296;XM_005404906 XP_005404963 MODEL 8761709 protein-coding Sfxn5 sideroflexin 5 ENCODES a protein that exhibits citrate transmembrane transporter activity (ortholog); INVOLVED IN citrate transport (ortholog); positive regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH Alstrom syndrome (ortholog); congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955424 12545985 12659238 + 102020027 AGCD01024614;AGCD01024615;AGCD01024616;AGCD01024617;GBCE01013411;XM_005385576;XM_005385577;XM_005385578;XM_013514690 XP_005385633;XP_005385634;XP_005385635;XP_013370144 MODEL 39133043 snrna U6 U6 spliceosomal RNA 8776776 ncrna LOC102024850 uncharacterized LOC102024850 NW_004955439 8784681 8786867 - 102024850 AGCD01035813;GBDF01260579;XR_261974 MODEL 8947055 protein-coding Phactr1 phosphatase and actin regulator 1 ENCODES a protein that exhibits actin binding (ortholog); protein phosphatase 1 binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actomyosin structure organization (ortholog); cell motility (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); ARTERIAL DISSECTION (ortholog); atherosclerosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955465 1395418 1915820 - 102015389 AGCD01050338;AGCD01050339;AGCD01050340;AGCD01050341;AGCD01050342;AGCD01050343;AGCD01050344;AGCD01050345;AGCD01050346;GBBH01011676;XM_005398816 XP_005398873 MODEL 8912676 protein-coding Spag8 sperm associated antigen 8 INVOLVED IN flagellated sperm motility (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); cilium (ortholog) NW_004955472 503286 506261 + 102006765 AGCD01053339;GBDK01184789;XM_013522937 XP_013378391 MODEL 8744623 protein-coding Prrc1 proline rich coiled-coil 1 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955415 580812 606126 + 102030064 AGCD01015845;AGCD01015846;GBCQ01129160;GBDF01189940;XM_005380545 XP_005380602 MODEL 8706442 protein-coding Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); NADH dehydrogenase activity (ortholog); oxygen sensor activity (ortholog); INVOLVED IN cellular response to oxygen levels (ortholog); gliogenesis (ortholog); mitochondrial ATP synthesis coupled electron transport (ortholog); PARTICIPATES IN doxorubicin pharmacokinetics pathway; ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); cardiomyopathy (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955468 12961873 12971278 + 102007000 AGCD01052194;GBCB01088834;XM_005400268 XP_005400325 MODEL 10302046 protein-coding LOC106149945 coiled-coil domain-containing protein 86-like NW_004955458 10689606 10703839 + 106149945 AGCD01047701;GBCQ01086243;XM_013520807 XP_013376261 MODEL 8945095 protein-coding Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D ENCODES a protein that exhibits mitogen-activated protein kinase binding (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN cellular response to starvation (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); DNA methylation-dependent constitutive heterochromatin formation (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; p38 MAPK signaling pathway; p53 signaling pathway; ASSOCIATED WITH Brain Stem Neoplasms (ortholog); breast cancer (ortholog); Breast Cancer, Familial (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955451 1878110 1915794 + 102008169 AGCD01042992;AGCD01042993;AGCD01042994;AGCD01042995;AGCD01042996;AGCD01042997;AGCD01042998;GBDF01009582;GBDF01009585;XM_005393964 XP_005394021 MODEL 39132466 snrna U6 U6 spliceosomal RNA 8911290 protein-coding Rmnd5b required for meiotic nuclear division 5 homolog B ASSOCIATED WITH autosomal recessive dyskeratosis congenita 1 (ortholog); autosomal recessive dyskeratosis congenita 2 (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytosol (ortholog) NW_004955408 2095150 2107394 - 102012160 AGCD01007991;GBCQ01095814;XM_005376040;XM_013508101 XP_005376097;XP_013363555 MODEL 10388563 ncrna LOC106146838 uncharacterized LOC106146838 NW_004955497 4076936 4081809 + 106146838 AGCD01062565;GBCQ01150881;XR_001231437 MODEL 10093904 protein-coding Tefm transcription elongation factor, mitochondrial ENCODES a protein that exhibits crossover junction DNA endonuclease activity (ortholog); transcription elongation factor activity (ortholog); INVOLVED IN mitochondrial DNA replication (ortholog); positive regulation of mitochondrial transcription (ortholog); regulation of oxidative phosphorylation (ortholog); ASSOCIATED WITH cerebral palsy (ortholog); Combined Oxidative Phosphorylation Deficiency 58 (ortholog); Developmental Disabilities (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955481 7034564 7042653 - 106146489 AGCD01057047;GBDF01156756;XM_013503463 XP_013358917 MODEL 8788375 pseudo LOC102007463 60S ribosomal protein L21 pseudogene NW_004955434 3733419 3736535 - 102007463 AGCD01032143 MODEL 8971678 protein-coding Wnt10b Wnt family member 10B INVOLVED IN bone trabecula formation (ortholog); canonical Wnt signaling pathway (ortholog); cell population proliferation (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); Kabuki syndrome (ortholog) NW_004955500 7782782 7800281 - 102010818 AGCD01063946;AGCD01063947;AGCD01063948;GBDI01165157;XM_005406675;XM_005406676;XM_005406677;XM_005406678;XM_005406679;XM_013505648 XP_005406732;XP_005406733;XP_005406734;XP_005406735;XP_005406736;XP_013361102 MODEL 8966301 protein-coding LOC102022821 arylacetamide deacetylase-like 4 NW_004955486 1310183 1318687 - 102022821 AGCD01058941;GBDK01044767;XM_005403946 XP_005404003 MODEL 8872815 protein-coding Ppm1m protein phosphatase, Mg2+/Mn2+ dependent 1M ENCODES a protein that exhibits manganese ion binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN protein dephosphorylation (ortholog); ASSOCIATED WITH congenital disorder of glycosylation In (ortholog); FOUND IN nucleus (ortholog) NW_004955532 3854699 3858923 + 102010518 AGCD01070302;GBCB01040412;GBDK01008951;XM_005410373;XM_013507628 XP_005410430;XP_013363082 MODEL 9064825 ncrna LOC102021100 uncharacterized LOC102021100 NW_004955408 24151253 24158010 + 102021100 AGCD01008596;GBCB01047828;XR_001232404;XR_001232405;XR_259708 MODEL 8965225 protein-coding LOC102009024 pentatricopeptide repeat-containing protein 1, mitochondrial NW_004955460 15091557 15111456 - 102009024 AGCD01048768;GBDI01065355;XM_005397942;XM_005397943 XP_005397999;XP_005398000 MODEL 9020952 protein-coding Slc35b2 solute carrier family 35 member B2 ENCODES a protein that exhibits 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity (ortholog); INVOLVED IN 3'-phosphoadenosine 5'-phosphosulfate transport (ortholog); 5'-adenylyl sulfate transmembrane transport (ortholog); chondroitin sulfate proteoglycan biosynthetic process (ortholog); ASSOCIATED WITH hypomyelinating leukodystrophy 26 (ortholog); spondyloepimetaphyseal dysplasia with joint laxity (ortholog); Treacher Collins syndrome 3 (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); membrane (ortholog) NW_004955437 9878592 9882431 - 102020711 AGCD01034548;GBDI01256888;XM_005389810 XP_005389867 MODEL 8788127 protein-coding Plekhg3 pleckstrin homology and RhoGEF domain containing G3 ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN regulation of cell migration (ortholog); regulation of establishment of cell polarity (ortholog); ASSOCIATED WITH congenital hemolytic anemia (ortholog); genetic disease (ortholog); hereditary spherocytosis type 2 (ortholog) NW_004955466 5172603 5212518 - 102026957 AGCD01050868;AGCD01050869;GBBH01091213;XM_013521957;XM_013521958;XM_013521959;XM_013521960;XM_013521961;XM_013521963;XM_013521964 XP_013377411;XP_013377412;XP_013377413;XP_013377414;XP_013377415;XP_013377417;XP_013377418 MODEL 8983221 protein-coding LOC102019337 zinc finger protein 112 NW_004955555 1654784 1704689 - 102019337 AGCD01073096;AGCD01073097;GBCE01005259;GBDK01219670;XM_013508735 XP_013364189 MODEL 8994435 protein-coding Sipa1l3 signal induced proliferation associated 1 like 3 INVOLVED IN cytoskeleton organization (ortholog); epithelial cell morphogenesis (ortholog); establishment of epithelial cell polarity (ortholog); ASSOCIATED WITH cataract 45 (ortholog); FOUND IN apical part of cell (ortholog); glutamatergic synapse (ortholog); Golgi apparatus (ortholog) NW_004955468 1212102 1438527 - 102023344 AGCD01051762;AGCD01051763;AGCD01051764;AGCD01051765;AGCD01051766;AGCD01051767;AGCD01051768;GBDF01067550;XM_005399879;XM_013522426 XP_005399936;XP_013377880 MODEL 8906918 protein-coding LOC102005692 myosin-8 NW_004955467 6760351 6787249 + 102005692 AGCD01051422;AGCD01051423;GBBH01072423;GBCB01079090;XM_013522113 XP_013377567 MODEL 8876912 trna Trnar-ucu transfer RNA arginine (anticodon UCU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955423;NW_004955511;NW_004955465;NW_004955468;NW_004955467 841104;4044405;13275754;10939794;8841103 841188;4044489;13275843;10939867;8841189 -;+;+;-;- 101978839 AGCD01023421;AGCD01050596;AGCD01051475;AGCD01052109;AGCD01066488 MODEL 10376603 protein-coding LOC106149118 UPF0317 protein KRH_21160-like NW_004955437 16871639 16872489 - 106149118 AGCD01034715;GBCQ01089553;XM_013516969 XP_013372423 MODEL 8802265 protein-coding Krt25 keratin 25 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); INVOLVED IN cytoskeleton organization (ortholog); hair cycle (ortholog); hair follicle morphogenesis (ortholog); ASSOCIATED WITH Autosomal Recessive Woolly Hair (ortholog); autosomal recessive woolly hair 3 (ortholog); hypotrichosis 8 (ortholog); FOUND IN keratin filament (ortholog) NW_004955451 15216868 15223383 - 102018554 AGCD01043602;GBDF01132093;XM_005394372 XP_005394429 MODEL 8784321 protein-coding Epha5 EPH receptor A5 ENCODES a protein that exhibits ephrin receptor activity (ortholog); GPI-linked ephrin receptor activity (ortholog); growth factor binding (ortholog); INVOLVED IN axon guidance (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); cellular response to forskolin (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH high grade glioma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN adherens junction (ortholog); axon (ortholog); cell periphery (ortholog) NW_004955447 7066111 7382046 + 102015063 AGCD01040810;AGCD01040811;AGCD01040812;AGCD01040813;AGCD01040814;AGCD01040815;AGCD01040816;AGCD01040817;AGCD01040818;AGCD01040819;GBCQ01016524;XM_005392842;XM_013518577 XP_005392899;XP_013374031 MODEL 39133535 snrna U4 U4 spliceosomal RNA 8896744 protein-coding LOC102023521 HLA class II histocompatibility antigen, DM beta chain ENCODES a protein that exhibits MHC class II protein complex binding (ortholog); INVOLVED IN antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); MHC class II protein complex assembly (ortholog); peptide antigen assembly with MHC class II protein complex (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); Experimental Liver Cirrhosis (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); late endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955437 1544906 1551412 - 102023521 AGCD01034216;GBBH01000778;GBDI01007415;XM_013517006 XP_013372460 MODEL 8968083 protein-coding Sp100 SP100 nuclear antigen ENCODES a protein that exhibits chromo shadow domain binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN DNA damage response, signal transduction by p53 class mediator (ortholog); maintenance of protein location (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog); FOUND IN cytoplasm (ortholog); Mre11 complex (ortholog); nuclear body (ortholog) NW_004955453 4774739 4856238 - 102008057 AGCD01044698;AGCD01044699;AGCD01044700;GBCE01115892;XM_013519802;XM_013519803;XM_013519804;XM_013519805;XM_013519806;XM_013519807;XM_013519808;XM_013519809 XP_013375256;XP_013375257;XP_013375258;XP_013375259;XP_013375260;XP_013375261;XP_013375262;XP_013375263 MODEL 8869187 protein-coding Szrd1 SUZ RNA binding domain containing 1 ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog) NW_004955527 1938477 1961524 - 102027450 AGCD01069420;GBDI01020498;XM_005409829;XM_005409830;XM_005409831;XM_005409832;XM_013507385;XM_013507386 XP_005409886;XP_005409887;XP_005409888;XP_005409889;XP_013362839;XP_013362840 MODEL 9049718 ncrna LOC102013327 uncharacterized LOC102013327 NW_004955515 1287451 1288282 - 102013327 AGCD01067223;GBDF01052083;XR_264519 MODEL 8951590 protein-coding LOC102017735 cytochrome c, somatic-like NW_004955404 12414422 12414848 + 102017735 AGCD01003461;XM_005374082 XP_005374139 MODEL 8797824 pseudo LOC102018086 glyceraldehyde-3-phosphate dehydrogenase pseudogene NW_004955472 5347652 5348320 - 102018086 AGCD01053576 MODEL 8938752 protein-coding Tssk4 testis specific serine kinase 4 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN fertilization (ortholog); flagellated sperm motility (ortholog); peptidyl-serine phosphorylation (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Specific Granule Deficiency (ortholog); FOUND IN motile cilium (ortholog); sperm flagellum (ortholog) NW_004955409 36190182 36191801 - 102008068 AGCD01010450;GBDF01003132;GBDJ01396043;XM_013510407 XP_013365861 MODEL 9024430 protein-coding LOC102023894 chromosome unknown open reading frame, human C11orf54 ENCODES a protein that exhibits hydrolase activity, acting on ester bonds (ortholog); zinc ion binding (ortholog); INVOLVED IN DNA damage response (ortholog); regulation of DNA repair (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955414 780009 809016 - 102023894 AGCD01014746;AGCD01014747;AGCD01014748;AGCD01014749;GBCQ01000810;XM_005379702;XM_005379703;XM_005379704;XM_013511833 XP_005379759;XP_005379760;XP_005379761;XP_013367287 MODEL 9036209 protein-coding Slc8a1 solute carrier family 8 member A1 ENCODES a protein that exhibits ankyrin binding (ortholog); calcium ion binding (ortholog); calcium:monoatomic cation antiporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration (ortholog); INVOLVED IN calcium ion export (ortholog); calcium ion homeostasis (ortholog); calcium ion import (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); brain ischemia (ortholog); Cardiomegaly (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); basolateral plasma membrane (ortholog) NW_004955441 7653107 8037784 - 102017708 AGCD01036968;AGCD01036969;AGCD01036970;AGCD01036971;AGCD01036972;AGCD01036973;AGCD01036974;GBCQ01100771;XM_005390909;XM_005390910;XM_005390911;XM_005390912;XM_013517578;XM_013517579;XM_013517580;XM_013517581;XM_013517582 XP_005390966;XP_005390967;XP_005390968;XP_005390969;XP_013373032;XP_013373033;XP_013373034;XP_013373035;XP_013373036 MODEL 8707171 pseudo LOC102007137 glucose-6-phosphatase 3 pseudogene NW_004955503 444692 461910 + 102007137 AGCD01064504 MODEL 10255387 pseudo LOC106146839 ferritin light chain-like NW_004955407 41739584 41746486 - 106146839 AGCD01007878 MODEL 8786056 protein-coding Sclt1 sodium channel and clathrin linker 1 ENCODES a protein that exhibits clathrin binding (ortholog); sodium channel regulator activity (ortholog); INVOLVED IN cilium assembly (ortholog); clustering of voltage-gated sodium channels (ortholog); ASSOCIATED WITH astigmatism (ortholog); autosomal recessive polycystic kidney disease (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955428 12583203 12753577 + 102027432 AGCD01027931;AGCD01027932;AGCD01027933;GBDF01159365;XM_005386718;XM_013515272;XM_013515273;XM_013515274 XP_005386775;XP_013370726;XP_013370727;XP_013370728 MODEL 8995761 protein-coding Epha6 EPH receptor A6 PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Bardet-Biedl syndrome 3 (ortholog) NW_004955407 398415 1220542 - 102012926 AGCD01006740;AGCD01006741;AGCD01006742;AGCD01006743;AGCD01006744;AGCD01006745;AGCD01006746;AGCD01006747;AGCD01006748;AGCD01006749;AGCD01006750;AGCD01006751;AGCD01006752;AGCD01006753;AGCD01006754;AGCD01006755;AGCD01006756;AGCD01006757;AGCD01006758;AGCD01006759;AGCD01006760;AGCD01006761;AGCD01006762;AGCD01006763;AGCD01006764;AGCD01006765;AGCD01006766;AGCD01006767;AGCD01006768;AGCD01006769;AGCD01006770;AGCD01006771;AGCD01006772;AGCD01006773;AGCD01006774;AGCD01006775;AGCD01006776;AGCD01006777;AGCD01006778;AGCD01006779;AGCD01006780;AGCD01006781;AGCD01006782;AGCD01006783;AGCD01006784;AGCD01006785;AGCD01006786;GBCB01033975;XM_005375498;XM_005375499;XM_005375500;XM_013503527 XP_005375555;XP_005375556;XP_005375557;XP_013358981 MODEL 8725545 pseudo LOC102013333 prefoldin subunit 4-like NW_004955530 2262235 2268611 + 102013333 AGCD01069911 MODEL 8924495 pseudo LOC102007465 GPALPP motifs-containing protein 1 pseudogene NW_004955436 21483145 21488677 - 102007465 AGCD01034055 MODEL 9064812 protein-coding Wnt11 Wnt family member 11 ENCODES a protein that exhibits protein kinase activator activity (ortholog); INVOLVED IN adrenal gland development (ortholog); apoptotic process (ortholog); artery morphogenesis (ortholog); PARTICIPATES IN the Wnt/calcium signaling pathway; Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Abnormalities, Drug-Induced (ortholog); Animal Disease Models (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN cytoplasm (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955414 15674478 15694758 + 102020902 AGCD01015187;AGCD01015188;GBDK01241149;XM_005379875;XM_005379876;XM_013512079 XP_005379932;XP_005379933;XP_013367533 MODEL 8716983 pseudo LOC102023895 cytochrome c oxidase subunit 6C-like NW_004955469 7454142 7456205 + 102023895 AGCD01052416 MODEL 9000065 pseudo LOC102005693 heterogeneous nuclear ribonucleoprotein A3 pseudogene NW_004955413 21622743 21623904 - 102005693 AGCD01014258 MODEL 9030185 protein-coding Slc35b3 solute carrier family 35 member B3 ENCODES a protein that exhibits 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity (ortholog); INVOLVED IN 5'-adenylyl sulfate transmembrane transport (ortholog); peptidyl-tyrosine sulfation (ortholog); FOUND IN Golgi membrane (ortholog); trans-Golgi network (ortholog) NW_004955465 5599728 5621031 + 102023884 AGCD01050431;GBDF01010803;XM_005398841;XM_005398842;XM_005398843 XP_005398898;XP_005398899;XP_005398900 MODEL 8822557 protein-coding Slc8a2 solute carrier family 8 member A2 ENCODES a protein that exhibits calcium ion transmembrane transporter activity (ortholog); calcium:monoatomic cation antiporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration (ortholog); calcium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion export across plasma membrane (ortholog); calcium ion import across plasma membrane (ortholog); calcium ion transmembrane transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); brain ischemia (ortholog); Reperfusion Injury (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cell projection (ortholog) NW_004955574 1290907 1315399 - 102010647 AGCD01075172;AGCD01075173;GBDF01287717;GBDJ01063990;XM_005413871 XP_005413928 MODEL 8782196 protein-coding Lmbr1l limb development membrane protein 1 like ENCODES a protein that exhibits transmembrane signaling receptor activity (ortholog); INVOLVED IN hematopoietic stem cell differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); receptor-mediated endocytosis (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955500 7922422 7934538 - 102014922 AGCD01063960;AGCD01063961;GBBH01209783;GBDK01196940;XM_013505718 XP_013361172 MODEL 8767685 protein-coding Sirpa signal regulatory protein alpha ENCODES a protein that exhibits cell-cell adhesion mediator activity (ortholog); GTPase regulator activity (ortholog); protein antigen binding (ortholog); INVOLVED IN actin filament organization (ortholog); cell migration (ortholog); cell motility (ortholog); ASSOCIATED WITH pre-malignant neoplasm (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955415 13030752 13072735 + 102011533 AGCD01016239;AGCD01016240;AGCD01016241;AGCD01016242;GBBH01061866;XM_005380740;XM_005380741;XM_005380742;XM_013512244;XM_013512245 XP_005380797;XP_005380798;XP_005380799;XP_013367698;XP_013367699 MODEL 8854456 protein-coding Trh thyrotropin releasing hormone ENCODES a protein that exhibits thyrotropin-releasing hormone activity (ortholog); INVOLVED IN adult walking behavior (ortholog); eating behavior (ortholog); histamine metabolic process (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); alkaptonuria (ortholog); amnestic disorder (ortholog); FOUND IN secretory granule (ortholog) NW_004955429 17487275 17489385 - 102010610 AGCD01028858;GBBH01103008;XM_005387079;XM_013515365 XP_005387136;XP_013370819 MODEL 39132468 snrna U6 U6 spliceosomal RNA 9047053 protein-coding Lmbrd1 LMBR1 domain containing 1 ENCODES a protein that exhibits AP-2 adaptor complex binding (ortholog); clathrin heavy chain binding (ortholog); insulin receptor binding (ortholog); INVOLVED IN clathrin-dependent endocytosis (ortholog); gastrulation (ortholog); insulin receptor internalization (ortholog); ASSOCIATED WITH Donnai-Barrow syndrome (ortholog); genetic disease (ortholog); inherited metabolic disorder (ortholog); FOUND IN clathrin-coated endocytic vesicle (ortholog); clathrin-coated vesicle (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955488 4774835 4879401 - 102024687 AGCD01059605;AGCD01059606;GBBH01208099;XM_005404466 XP_005404523 MODEL 9046941 ncrna LOC102022824 uncharacterized LOC102022824 NW_004955422 2965683 2972553 + 102022824 AGCD01022497;GBCQ01021642;XR_001233980;XR_260849 MODEL 8964463 protein-coding Szt2 SZT2 subunit of KICSTOR complex INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to glucose starvation (ortholog); central nervous system development (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); cryptorchidism (ortholog); FOUND IN GATOR1 complex (ortholog); GATOR2 complex (ortholog); KICSTOR complex (ortholog) NW_004955537 2968839 3017863 + 102027676 AGCD01070940;GBCE01137134;XM_005410657;XM_005410658;XM_013507749 XP_005410714;XP_005410715;XP_013363203 MODEL 39132470 snrna U6 U6 spliceosomal RNA 8969052 protein-coding Tek TEK receptor tyrosine kinase ENCODES a protein that exhibits growth factor binding (ortholog); identical protein binding (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell surface receptor protein tyrosine kinase signaling pathway (ortholog); cell surface receptor signaling pathway (ortholog); PARTICIPATES IN angiopoietin signaling pathway; ASSOCIATED WITH acute kidney tubular necrosis (ortholog); angiosarcoma (ortholog); arteriovenous malformation (ortholog); FOUND IN actin filament (ortholog); apical plasma membrane (ortholog); basal plasma membrane (ortholog) NW_004955472 7633790 7748130 - 102025569 AGCD01053624;AGCD01053625;AGCD01053626;AGCD01053627;AGCD01053628;GBDK01022711;XM_005401149;XM_005401150;XM_005401151 XP_005401206;XP_005401207;XP_005401208 MODEL 10327845 pseudo LOC102009773 Ig heavy chain V-III region 23-like NW_004955569 3800 4314 + 102009773 AGCD01074556 MODEL 9059602 protein-coding Rfwd3 ring finger and WD repeat domain 3 ENCODES a protein that exhibits MDM2/MDM4 family protein binding (ortholog); p53 binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN DNA damage response (ortholog); double-strand break repair via homologous recombination (ortholog); interstrand cross-link repair (ortholog); ASSOCIATED WITH Fanconi anemia complementation group W (ortholog); Neurodevelopmental Disorders (ortholog); paraplegia (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); site of DNA damage (ortholog) NW_004955484 2824057 2857321 + 102025010 AGCD01058136;AGCD01058137;AGCD01058138;AGCD01058139;AGCD01058140;AGCD01058141;AGCD01058142;GBDJ01316140;XM_005403457;XM_005403458;XM_005403460;XM_005403461;XM_005403462;XM_013503864 XP_005403514;XP_005403515;XP_005403517;XP_005403518;XP_005403519;XP_013359318 MODEL 39133044 snrna U6 U6 spliceosomal RNA 8861203 protein-coding LOC102024853 zinc finger protein 709-like NW_004955546 605401 608730 - 102024853 AGCD01072006;GBDK01019021;XM_013508372 XP_013363826 MODEL 9062117 protein-coding Phactr2 phosphatase and actin regulator 2 ASSOCIATED WITH Alzheimer's disease (ortholog); COVID-19 (ortholog); familial hemophagocytic lymphohistiocytosis 4 (ortholog) NW_004955436 16607279 16690412 - 102007273 AGCD01033926;AGCD01033927;AGCD01033928;GBDI01173932;GBDJ01062457;XM_013516614 XP_013372068 MODEL 8858926 pseudo LOC102023898 olfactory receptor 52J3-like NW_004955414 20772695 20773601 + 102023898 AGCD01015389 MODEL 9057280 protein-coding Ndufs3 NADH:ubiquinone oxidoreductase core subunit S3 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); NADH dehydrogenase activity (ortholog); INVOLVED IN mitochondrial electron transport, NADH to ubiquinone (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); reactive oxygen species metabolic process (ortholog); PARTICIPATES IN doxorubicin pharmacokinetics pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Breast Neoplasms (ortholog); Cardiomegaly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955422 713370 717926 - 102018838 AGCD01022432;GBCE01030985;XM_005383959 XP_005384016 MODEL 9042815 protein-coding Spag9 sperm associated antigen 9 ENCODES a protein that exhibits identical protein binding (ortholog); JUN kinase binding (ortholog); kinesin binding (ortholog); INVOLVED IN lysosome localization (ortholog); negative regulation of dendrite extension (ortholog); negative regulation of neuron differentiation (ortholog); PARTICIPATES IN p38 MAPK signaling pathway; ASSOCIATED WITH endometrial cancer (ortholog); hepatocellular carcinoma (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN centriolar satellite (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955451 10800251 10895400 + 102027370 AGCD01043333;AGCD01043334;GBCB01024996;XM_005394115;XM_005394116;XM_005394118;XM_005394119;XM_013519279;XM_013519280;XM_013519281;XM_013519283 XP_005394172;XP_005394173;XP_005394175;XP_005394176;XP_013374733;XP_013374734;XP_013374735;XP_013374737 MODEL 10095784 protein-coding LOC106149946 translation initiation factor IF-2-like NW_004955458 11157507 11161567 + 106149946 AGCD01047725;GBCQ01140813;GBDI01088795;XM_013520808 XP_013376262 MODEL 9028853 protein-coding S100a10 S100 calcium binding protein A10 ENCODES a protein that exhibits lipid binding (ortholog); protein homodimerization activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN membrane raft assembly (ortholog); mRNA transcription by RNA polymerase II (ortholog); positive regulation of focal adhesion assembly (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Animal Disease Models (ortholog); depressive disorder (ortholog); FOUND IN AnxA2-p11 complex (ortholog); cell surface (ortholog); membrane raft (ortholog) NW_004955589 435798 446361 + 102010849 AGCD01076171;GBCQ01009914;XM_005414536 XP_005414593 MODEL 8900622 protein-coding Rbm26 RNA binding motif protein 26 ASSOCIATED WITH anthracosis (ortholog); chromosome 13q14 deletion syndrome (ortholog) NW_004955404 28116009 28198878 + 102008176 AGCD01003945;AGCD01003946;AGCD01003947;GBBH01077994;GBDF01050484;XM_013516361;XM_013516363;XM_013516366;XM_013516370 XP_013371815;XP_013371817;XP_013371820;XP_013371824 MODEL 8774473 protein-coding Rfx1 regulatory factor X1 ENCODES a protein that exhibits DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955415 32710135 32737918 - 102008620 AGCD01016731;AGCD01016732;GBCC01047226;XM_005381077;XM_013512197 XP_005381134;XP_013367651 MODEL 8943653 ncrna LOC102008606 uncharacterized LOC102008606 NW_004955410 29146901 29160996 - 102008606 AGCD01011276;GBDF01148292;XR_001232701;XR_001232702 MODEL 8841859 protein-coding Rnase10 ribonuclease A family member 10 (inactive) INVOLVED IN epithelial cell morphogenesis (ortholog); heterotypic cell-cell adhesion (ortholog); male gonad development (ortholog); ASSOCIATED WITH purine nucleoside phosphorylase deficiency (ortholog) NW_004955550 1326203 1331558 + 102026912 AGCD01072561;AGCD01072562;XM_005412067;XM_013508553 XP_005412124;XP_013364007 MODEL 10099518 protein-coding LOC106149947 inner nuclear membrane protein Man1-like NW_004955458 11883317 11883667 + 106149947 AGCD01047762;GBDF01076502;XM_013520809 XP_013376263 MODEL 8820599 pseudo LOC102021101 keratin, type I cytoskeletal 19 pseudogene NW_004955408 14199718 14201846 - 102021101 AGCD01008387 MODEL 8818553 pseudo LOC102007145 zinc finger protein OZF-like NW_004955431 11381806 11382456 + 102007145 AGCD01030233 MODEL 9042876 ncrna LOC102003860 uncharacterized LOC102003860 NW_004955470 10705641 10717884 + 102003860 AGCD01052875;GBCE01089457;XR_263497 MODEL 8780271 protein-coding Sparc secreted protein acidic and cysteine rich ENCODES a protein that exhibits calcium ion binding (ortholog); collagen binding (ortholog); extracellular matrix binding (ortholog); INVOLVED IN bone development (ortholog); cellular response to growth factor stimulus (ortholog); heart development (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adrenocortical carcinoma (ortholog); Brain Injuries (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular matrix (ortholog) NW_004955408 6100123 6122460 - 102021944 AGCD01008164;GBDF01263214;XM_005376165;XM_005376166;XM_005376167 XP_005376222;XP_005376223;XP_005376224 MODEL 8938044 ncrna LOC102006033 uncharacterized LOC102006033 NW_004955481 9531180 9539647 + 102006033 AGCD01057102;GBDF01031476;XR_263796 MODEL 8737535 pseudo LOC102009774 calmodulin-A pseudogene NW_004955573 459943 467278 + 102009774 AGCD01074980 MODEL 10372417 ncrna LOC106149948 uncharacterized LOC106149948 NW_004955458 3788482 3798974 + 106149948 AGCD01047345;AGCD01047346;AGCD01047347;GBCE01168228;XR_001236438 MODEL 39133536 snrna U4 U4 spliceosomal RNA 8884023 protein-coding Krt26 keratin 26 NW_004955451 15230834 15236699 - 102018051 AGCD01043602;GBCQ01057548;XM_005394370 XP_005394427 MODEL 8933403 protein-coding Sp110 SP110 nuclear body protein INVOLVED IN positive regulation of apoptotic process (ortholog); response to bacterium (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatic venoocclusive disease with immunodeficiency (ortholog); Joubert syndrome 22 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955453 4915541 4939438 + 102028713 AGCD01044701;GBCQ01123762;XM_005395419;XM_005395420;XM_013519981 XP_005395476;XP_005395477;XP_013375435 MODEL 9042426 ncrna LOC102009778 uncharacterized LOC102009778 NW_004955402 5585104 5592598 - 102009778 AGCD01000137;GBDF01225737;XR_259030 MODEL 8991062 pseudo LOC102018089 methyltransferase-like protein 17, mitochondrial NW_004955416 190699 192939 + 102018089 AGCD01016780 MODEL 10338240 ncrna LOC106149949 uncharacterized LOC106149949 NW_004955458 14382215 14392808 - 106149949 AGCD01047832;XR_001236440 MODEL 9025490 protein-coding Sfswap splicing factor SWAP INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); mRNA 5'-splice site recognition (ortholog); negative regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog) NW_004955482 808684 871377 - 102026112 AGCD01057189;GBDI01121728;XM_005402976;XM_005402977;XM_005402978;XM_005402980;XM_005402981;XM_005402983;XM_005402984 XP_005403033;XP_005403034;XP_005403035;XP_005403037;XP_005403038;XP_005403040;XP_005403041 MODEL 9012894 protein-coding Ndufs4 NADH:ubiquinone oxidoreductase subunit S4 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); INVOLVED IN adult behavior (ortholog); adult walking behavior (ortholog); brain development (ortholog); ASSOCIATED WITH brain disease (ortholog); COVID-19 (ortholog); developmental coordination disorder (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955446 13764907 13864824 - 102024733 AGCD01040256;AGCD01040257;AGCD01040258;AGCD01040259;GBDF01053717;XM_005392719 XP_005392776 MODEL 10126297 ncrna LOC106146840 uncharacterized LOC106146840 NW_004955497 7710895 7765013 + 106146840 AGCD01062681;GBDF01056325;XR_001231439 MODEL 8821599 protein-coding LOC102022829 guanylate-binding protein 6-like NW_004955423 5119689 5138855 - 102022829 AGCD01023555;AGCD01023556;GBDK01038421;XM_005385353 XP_005385410 MODEL 8754136 protein-coding Sgca sarcoglycan alpha INVOLVED IN response to denervation involved in regulation of muscle adaptation (ortholog); skeletal muscle tissue regeneration (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrial fibrillation (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); FOUND IN cell-cell junction (ortholog); dystroglycan complex (ortholog); membrane raft (ortholog) NW_004955451 11490891 11501618 - 102012394 AGCD01043355;AGCD01043356;GBCQ01015636;GBDI01122074;XM_013519105 XP_013374559 MODEL 8729035 protein-coding Rbm27 RNA binding motif protein 27 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955415 7829022 7901617 - 102016698 AGCD01016058;GBDI01261789;XM_005380675;XM_005380676;XM_005380677;XM_005380678 XP_005380732;XP_005380733;XP_005380734;XP_005380735 MODEL 9041799 protein-coding LOC102012087 interferon-induced very large GTPase 1-like NW_004955414 22472329 22477687 - 102012087 AGCD01015457;XM_005380508 XP_005380565 MODEL 8865526 protein-coding LOC102007148 putative spermatogenesis-associated protein 31D4 NW_004955434 10580926 10593113 + 102007148 AGCD01032355;GBDF01001033;XM_005388673 XP_005388730 MODEL 8971233 protein-coding Taar1 trace amine associated receptor 1 ENCODES a protein that exhibits G protein-coupled amine receptor activity (ortholog); G protein-coupled receptor activity (ortholog); trace-amine receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN endomembrane system (ortholog); plasma membrane (ortholog) NW_004955436 13204876 13207928 - 102024376 AGCD01033855;XM_005389216 XP_005389273 MODEL 9019824 protein-coding Wnt16 Wnt family member 16 INVOLVED IN bone remodeling (ortholog); cardiac epithelial to mesenchymal transition (ortholog); keratinocyte differentiation (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog) NW_004955479 3065312 3077260 + 102007764 AGCD01056290;AGCD01056291;GBCE01032577;XM_005402314 XP_005402371 MODEL 39133045 snrna U6 U6 spliceosomal RNA 8735694 ncrna LOC102007156 uncharacterized LOC102007156 NW_004955440 17575869 17579753 - 102007156 AGCD01036575;GBDF01304834;XR_262035 MODEL 8744340 protein-coding LOC102015107 olfactory receptor 287 NW_004955477 11097729 11098882 + 102015107 AGCD01055716;XM_005402085 XP_005402142 MODEL 8999657 ncrna LOC102017737 uncharacterized LOC102017737 NW_004955404 29784924 29788045 + 102017737 AGCD01003985;GBDJ01123967;XR_259327 MODEL 39133537 snrna U4 U4 spliceosomal RNA 9052304 protein-coding Bdh1 3-hydroxybutyrate dehydrogenase 1 ENCODES a protein that exhibits 3-hydroxybutyrate dehydrogenase activity (ortholog); phospholipid binding (ortholog); INVOLVED IN adipose tissue development (ortholog); liver development (ortholog); response to cadmium ion (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ketone bodies metabolic pathway; succinyl-CoA:3-oxoacid transferase deficiency pathway; ASSOCIATED WITH autistic disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955420 13454379 13486700 - 102023364 AGCD01020922;AGCD01020923;GBCB01044106;XM_005383174;XM_005383176 XP_005383231;XP_005383233 MODEL 8819659 protein-coding Wnt2 Wnt family member 2 ENCODES a protein that exhibits cytokine activity (ortholog); frizzled binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN atrial cardiac muscle tissue morphogenesis (ortholog); canonical Wnt signaling pathway (ortholog); cardiac epithelial to mesenchymal transition (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH autistic disorder (ortholog); breast cancer (ortholog); breast carcinoma (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955432 22988208 23024530 - 102015880 AGCD01031272;GBCQ01174742;GBDK01118076;XM_013515906 XP_013371360 MODEL 8750369 protein-coding S100a11 S100 calcium binding protein A11 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); protein homodimerization activity (ortholog); S100 protein binding (ortholog); INVOLVED IN positive regulation of smooth muscle cell migration (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); ruffle (ortholog) NW_004955589 405544 409936 + 102010111 AGCD01076171;GBDF01162287;XM_005414534;XM_005414535;XM_013509959;XM_013509960 XP_005414591;XP_005414592;XP_013365413;XP_013365414 MODEL 8905968 protein-coding Rfx2 regulatory factor X2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN acrosome assembly (ortholog); cellular response to leukemia inhibitory factor (ortholog); cilium assembly (ortholog); ASSOCIATED WITH tooth agenesis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955495 3414737 3485393 + 102017583 AGCD01061856;AGCD01061857;AGCD01061858;AGCD01061859;AGCD01061860;AGCD01061861;GBDF01044808;XM_005405732;XM_005405733;XM_005405735;XM_005405736;XM_005405737;XM_005405739;XM_005405740;XM_013505325;XM_013505326 XP_005405789;XP_005405790;XP_005405792;XP_005405793;XP_005405794;XP_005405796;XP_005405797;XP_013360779;XP_013360780 MODEL 8886932 protein-coding Krt27 keratin 27 INVOLVED IN hair follicle morphogenesis (ortholog) NW_004955451 15242355 15246979 - 102017733 AGCD01043602;GBCB01120207;XM_005394369 XP_005394426 MODEL 8847491 ncrna LOC102018090 uncharacterized LOC102018090 NW_004955416 20999242 21004789 + 102018090 AGCD01017482;GBDI01164565;XR_260400 MODEL 15036853 trna Trnas-acu transfer RNA serine (anticodon ACU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978841 39133538 snrna U4 U4 spliceosomal RNA 8836577 protein-coding Scly selenocysteine lyase ENCODES a protein that exhibits amino acid binding (ortholog); protein homodimerization activity (ortholog); selenocysteine lyase activity (ortholog); INVOLVED IN lipid metabolic process (ortholog); negative regulation of cellular response to oxidative stress (ortholog); response to insulin (ortholog); PARTICIPATES IN selenoamino acid metabolic pathway; ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN catalytic complex (ortholog); Golgi apparatus (ortholog) NW_004955542 2453826 2472951 - 102027902 AGCD01071522;AGCD01071523;GBBH01065161;XM_005411197;XM_013508017 XP_005411254;XP_013363471 MODEL 8777889 protein-coding LOC102021109 olfactory receptor 149-like NW_004955412 24681324 24682255 + 102021109 AGCD01013121;XM_013510977 XP_013366431 MODEL 8812691 protein-coding Tekt1 tektin 1 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); microtubule cytoskeleton (ortholog) NW_004955467 12278515 12301736 - 102010241 AGCD01051628;AGCD01051629;AGCD01051630;GBCQ01031839;XM_005399679;XM_013522226 XP_005399736;XP_013377680 MODEL 8796530 ncrna LOC102023525 uncharacterized LOC102023525 NW_004955540 764227 796200 - 102023525 AGCD01071286;AGCD01071287;GBDK01357828;XR_001232114;XR_264815 MODEL 8871222 protein-coding Sgcb sarcoglycan beta INVOLVED IN cardiac muscle cell development (ortholog); gene expression (ortholog); glucose homeostasis (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2E (ortholog); cardiomyopathy (ortholog); FOUND IN dystroglycan complex (ortholog); dystrophin-associated glycoprotein complex (ortholog); plasma membrane (ortholog) NW_004955447 18459562 18472367 + 102011377 AGCD01041174;AGCD01041175;GBDJ01180305;GBDK01317787;XM_013518513 XP_013373967 MODEL 9042731 protein-coding LOC102024855 sialic acid-binding Ig-like lectin 16 NW_004955559 982400 992151 + 102024855 AGCD01073625;GBCQ01030836;XM_005412804 XP_005412861 MODEL 8932546 protein-coding Slc8a3 solute carrier family 8 member A3 ENCODES a protein that exhibits calcium:monoatomic cation antiporter activity (ortholog); calcium:monoatomic cation antiporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration (ortholog); calcium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion export across plasma membrane (ortholog); calcium ion import across plasma membrane (ortholog); calcium ion transmembrane transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); brain ischemia (ortholog); prostate cancer (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cell projection (ortholog) NW_004955466 220346 359627 + 102023887 AGCD01050656;AGCD01050657;AGCD01050658;AGCD01050659;GBCB01020048;XM_005399022;XM_005399024;XM_005399025;XM_005399027;XM_013522004 XP_005399079;XP_005399081;XP_005399082;XP_005399084;XP_013377458 MODEL 8766123 protein-coding Sirt1 sirtuin 1 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); caspase binding (ortholog); deacetylase activity (ortholog); INVOLVED IN angiogenesis (ortholog); behavioral response to starvation (ortholog); cardiac muscle cell apoptotic process (ortholog); PARTICIPATES IN histone modification pathway; hypoxia inducible factor pathway; p53 signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN axon (ortholog); chromatin (ortholog); chromatin silencing complex (ortholog) NW_004955425 20280725 20307663 + 102003783 AGCD01025726;AGCD01025727;AGCD01025728;GBCE01123136;GBDF01081323;XM_013514840 XP_013370294 MODEL 9011407 pseudo LOC102023526 protein kinase C iota type-like NW_004955437 14371160 14373635 + 102023526 AGCD01034669 MODEL 39133046 snrna U6 U6 spliceosomal RNA 8951396 protein-coding Lmbrd2 LMBR1 domain containing 2 INVOLVED IN adrenergic receptor signaling pathway (ortholog); ASSOCIATED WITH body dysmorphic disorder (ortholog); DEVELOPMENTAL DELAY WITH VARIABLE NEUROLOGIC AND BRAIN ABNORMALITIES (ortholog); Developmental Disabilities (ortholog) NW_004955426 20928323 20972371 - 102010820 AGCD01026576;GBDI01384158;XM_005386204;XM_005386205 XP_005386261;XP_005386262 MODEL 8734909 protein-coding LOC102007157 hemoglobin subunit alpha-3-like NW_004955442 17010737 17011588 - 102007157 AGCD01037931;GBDI01342197;XM_005391673 XP_005391730 MODEL 8785472 protein-coding Qrich2 glutamine rich 2 INVOLVED IN cell projection assembly (ortholog); flagellated sperm motility (ortholog); negative regulation of ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH spermatogenic failure 35 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); sperm flagellum (ortholog) NW_004955506 5990070 6015808 + 102026451 AGCD01065396;AGCD01065397;AGCD01065398;GBDF01010040;XM_013506111;XM_013506112;XM_013506113 XP_013361565;XP_013361566;XP_013361567 MODEL 8902361 ncrna LOC102013334 uncharacterized LOC102013334 NW_004955437 4653031 4657091 + 102013334 AGCD01034368;GBDF01122062;XR_261851 MODEL 8791845 protein-coding Epha7 EPH receptor A7 ENCODES a protein that exhibits axon guidance receptor activity (ortholog); chemorepellent activity (ortholog); ephrin receptor binding (ortholog); INVOLVED IN brain development (ortholog); branching morphogenesis of a nerve (ortholog); ephrin receptor signaling pathway (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Drug-Related Side Effects and Adverse Reactions (ortholog); Hemorrhage (ortholog); lung small cell carcinoma (ortholog); FOUND IN dendrite (ortholog); glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog) NW_004955411 19652146 19815418 - 102012295 AGCD01012039;AGCD01012040;AGCD01012041;AGCD01012042;GBCQ01095584;XM_005377770;XM_005377771;XM_005377772;XM_005377773 XP_005377827;XP_005377828;XP_005377829;XP_005377830 MODEL 8969950 ncrna LOC102005695 uncharacterized LOC102005695 NW_004955468 5827349 5829436 + 102005695 AGCD01051978;XR_263391 MODEL 8876856 protein-coding Sft2d1 SFT2 domain containing 1 NW_004955439 15555080 15575698 + 102027115 AGCD01036004;GBBH01064219;XM_005390657 XP_005390714 MODEL 8876913 protein-coding Slc35b4 solute carrier family 35 member B4 ENCODES a protein that exhibits UDP-N-acetylglucosamine transmembrane transporter activity (ortholog); UDP-xylose transmembrane transporter activity (ortholog); INVOLVED IN regulation of gluconeogenesis (ortholog); UDP-N-acetylglucosamine transmembrane transport (ortholog); UDP-xylose transmembrane transport (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955410 33695985 33728749 + 102004149 AGCD01011380;AGCD01011381;AGCD01011382;AGCD01011383;AGCD01011384;GBDF01160017;XM_005377537 XP_005377594 MODEL 8818527 ncrna LOC102006036 uncharacterized LOC102006036 NW_004955421 23412284 23447843 + 102006036 AGCD01022183;GBCQ01089850;XR_001233831;XR_260822 MODEL 8814534 ncrna LOC102018091 uncharacterized LOC102018091 NW_004955416 30012956 30018288 + 102018091 AGCD01017675;GBDF01066665;XR_260438 MODEL 8906494 protein-coding Ralb RAS like proto-oncogene B ENCODES a protein that exhibits ATPase binding (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN cellular response to exogenous dsRNA (ortholog); cellular response to starvation (ortholog); positive regulation of autophagosome assembly (ortholog); ASSOCIATED WITH pancreatic adenocarcinoma (ortholog); FOUND IN midbody (ortholog); plasma membrane (ortholog) NW_004955459 9533081 9574464 - 102016136 AGCD01048159;AGCD01048160;AGCD01048161;GBDI01080246;XM_005397650;XM_005397651 XP_005397707;XP_005397708 MODEL 8890509 pseudo LOC102012089 serine racemase pseudogene NW_004955475 6283187 6284059 - 102012089 AGCD01054958 MODEL 8730478 protein-coding Rbm28 RNA binding motif protein 28 PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH alopecia, neurologic defects, and endocrinopathy syndrome (ortholog); microcephaly (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleolus (ortholog) NW_004955479 9319132 9350261 - 102025576 AGCD01056458;AGCD01056459;AGCD01056460;GBBH01198087;GBDK01360890;XM_013503290 XP_013358744 MODEL 8921275 protein-coding Scmh1 Scm polycomb group protein homolog 1 INVOLVED IN anterior/posterior pattern specification (ortholog); chromatin remodeling (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); immunodeficiency 24 (ortholog); FOUND IN chromocenter (ortholog); male germ cell nucleus (ortholog) NW_004955537 819209 971297 - 102006390 AGCD01070875;AGCD01070876;AGCD01070877;AGCD01070878;AGCD01070879;AGCD01070880;AGCD01070881;XM_005410586;XM_013507788;XM_013507789;XM_013507790;XM_013507791;XM_013507792 XP_005410643;XP_013363242;XP_013363243;XP_013363244;XP_013363245;XP_013363246 MODEL 39131422 protein-coding TAAR2 trace amine associated receptor 2 (gene/pseudogene) 39131326 protein-coding PPM1N protein phosphatase, Mg2+/Mn2+ dependent 1N (putative) 9032861 protein-coding Plekhg4 pleckstrin homology and RhoGEF domain containing G4 PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rho/Rac/Cdc42 mediated signaling pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); spinocerebellar ataxia type 31 (ortholog) NW_004955484 9344830 9356182 - 102006352 AGCD01058415;GBDF01154360;XM_005403662;XM_013503891;XM_013503892 XP_005403719;XP_013359345;XP_013359346 MODEL 9056833 pseudo LOC102024856 zinc finger CCCH domain-containing protein 15-like NW_004955443 188796 208426 + 102024856 AGCD01038091;AGCD01038092 MODEL 8763603 protein-coding Sgcd sarcoglycan delta INVOLVED IN calcium ion homeostasis (ortholog); calcium-mediated signaling (ortholog); cardiac muscle cell contraction (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2F (ortholog); cardiomyopathy (ortholog); FOUND IN dystroglycan complex (ortholog); dystrophin-associated glycoprotein complex (ortholog); plasma membrane (ortholog) NW_004955408 10273344 10820108 + 102010673 AGCD01008265;AGCD01008266;AGCD01008267;AGCD01008268;AGCD01008269;AGCD01008270;AGCD01008271;AGCD01008272;AGCD01008273;AGCD01008274;GBCE01162943;XM_005376219;XM_013508746 XP_005376276;XP_013364200 MODEL 10285570 ncrna LOC106149950 uncharacterized LOC106149950 NW_004955458 4878926 4881805 - 106149950 AGCD01047444;GBDK01106220;XR_001236443 MODEL 8791288 pseudo LOC102017738 40S ribosomal protein S18 pseudogene NW_004955405 17787001 17787460 + 102017738 AGCD01005008;XR_259386 MODEL 8969200 protein-coding Scml1 Scm polycomb group protein like 1 ASSOCIATED WITH autistic disorder (ortholog); Coffin-Lowry syndrome (ortholog); developmental and epileptic encephalopathy 2 (ortholog); FOUND IN female germ cell nucleus (ortholog); male germ cell nucleus (ortholog) NW_004955519 578343 591299 - 102003576 AGCD01067878;GBDJ01403258;XM_013507015 XP_013362469 MODEL 10353112 ncrna LOC106149119 uncharacterized LOC106149119 NW_004955437 5707514 5708216 + 106149119 AGCD01034397;GBCQ01117734;XR_001235080 MODEL 10316747 ncrna LOC106146841 uncharacterized LOC106146841 NW_004955497 2176929 2191929 + 106146841 AGCD01062497;GBDF01181818;XR_001231441 MODEL 8916394 protein-coding LOC102023527 5-hydroxyisourate hydrolase-like NW_004955541 3493680 3496468 - 102023527 AGCD01071450;GBCE01141684;XM_005411087 XP_005411144 MODEL 9021421 protein-coding Ppm1e protein phosphatase, Mg2+/Mn2+ dependent 1E ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to xenobiotic stimulus (ortholog); negative regulation of protein kinase activity (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; calcium/calmodulin dependent kinase 2 signaling pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); Joubert syndrome 1 (ortholog); mulibrey nanism (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955451 3989575 4137400 - 102018877 AGCD01043087;AGCD01043088;AGCD01043089;AGCD01043090;AGCD01043091;AGCD01043092;GBDF01190593;XM_005393998 XP_005394055 MODEL 39133539 snrna U4 U4 spliceosomal RNA 8848632 protein-coding Lmcd1 LIM and cysteine rich domains 1 ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of calcineurin-NFAT signaling cascade (ortholog); regulation of cardiac muscle hypertrophy (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); coronary stenosis (ortholog); mitral valve insufficiency (ortholog); FOUND IN nucleus (ortholog) NW_004955561 151315 213904 + 102025852 AGCD01073819;GBCE01030182;XM_005412996;XM_013509111 XP_005413053;XP_013364565 MODEL 8960959 ncrna LOC102023900 uncharacterized LOC102023900 NW_004955414 33247134 33250913 + 102023900 AGCD01015800;GBDF01006488;XR_260228;XR_260229 MODEL 8727339 protein-coding Qrsl1 glutaminyl-tRNA amidotransferase subunit QRSL1 ENCODES a protein that exhibits glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (ortholog); INVOLVED IN glutaminyl-tRNAGln biosynthesis via transamidation (ortholog); mitochondrial translation (ortholog); regulation of protein stability (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); combined oxidative phosphorylation deficiency 40 (ortholog); Developmental Disabilities (ortholog); FOUND IN glutamyl-tRNA(Gln) amidotransferase complex (ortholog); mitochondrion (ortholog) NW_004955411 31950727 31981522 + 102006992 AGCD01012289;AGCD01012290;GBDF01157003;XM_005377831 XP_005377888 MODEL 8850307 protein-coding Tekt2 tektin 2 INVOLVED IN flagellated sperm motility (ortholog); inner dynein arm assembly (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); microtubule organizing center (ortholog) NW_004955452 14117043 14120800 + 102025535 AGCD01044451;GBCE01034235;XM_005395165;XM_013519531;XM_013519532 XP_005395222;XP_013374985;XP_013374986 MODEL 39131429 protein-coding TSSK4 testis specific serine kinase 4 9007281 protein-coding Sft2d2 SFT2 domain containing 2 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 25 (ortholog); parathyroid carcinoma (ortholog) NW_004955462 8878387 8897523 - 102018369 AGCD01049329;AGCD01049330;AGCD01049331;GBDK01080878;XM_005398208 XP_005398265 MODEL 8948788 ncrna LOC102015108 uncharacterized LOC102015108 NW_004955416 14789578 14812657 + 102015108 AGCD01017283;GBDK01390246;XR_001233365 MODEL 8904230 protein-coding Ralbp1 ralA binding protein 1 ENCODES a protein that exhibits ATPase-coupled transmembrane transporter activity (ortholog); GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN doxorubicin transport (ortholog); endocytosis (ortholog); negative regulation of smooth muscle cell proliferation (ortholog); PARTICIPATES IN doxorubicin pharmacokinetics pathway; vinblastine pharmacodynamics pathway; vincristine pharmacodynamics pathway; ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); dystonia (ortholog); hypertension (ortholog); FOUND IN membrane (ortholog); mitochondrion (ortholog); nuclear body (ortholog) NW_004955402 2571672 2616040 - 102023859 AGCD01000084;AGCD01000085;AGCD01000086;GBCB01039887;XM_005372598;XM_005372599;XM_005372600;XM_005372601 XP_005372655;XP_005372656;XP_005372657;XP_005372658 MODEL 9017153 pseudo LOC102009783 60S ribosomal protein L23a pseudogene NW_004955402 42724840 42797870 + 102009783 AGCD01001045;AGCD01001046;AGCD01001047;AGCD01001048;AGCD01001049;XR_259084 MODEL 8940695 ncrna LOC102007466 uncharacterized LOC102007466 NW_004955532 2166348 2168036 + 102007466 AGCD01070222;GBDF01088883;XR_264727 MODEL 8787980 protein-coding Slc8b1 solute carrier family 8 member B1 ENCODES a protein that exhibits calcium:sodium antiporter activity (ortholog); calcium:sodium antiporter activity involved in regulation of cardiac muscle cell membrane potential (ortholog); identical protein binding (ortholog); INVOLVED IN calcium export from the mitochondrion (ortholog); calcium ion transmembrane transport (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Cerebral Hemorrhage (ortholog); FOUND IN mitochondrial crista (ortholog); mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog) NW_004955482 9594872 9617136 - 102017019 AGCD01057574;GBBH01102174;XM_013503592;XM_013503593;XM_013503594 XP_013359046;XP_013359047;XP_013359048 MODEL 8967674 protein-coding Rbm3 RNA binding motif protein 3 ENCODES a protein that exhibits ribosomal large subunit binding (ortholog); INVOLVED IN miRNA processing (ortholog); positive regulation of translation (ortholog); regulation of translation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Breast Neoplasms (ortholog); congenital disorder of glycosylation type IIm (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); large ribosomal subunit (ortholog) NW_004955543 166891 173987 + 102020843 AGCD01071562;GBDI01000015;XM_005411265;XM_005411266;XM_005411267 XP_005411322;XP_005411323;XP_005411324 MODEL 8918265 protein-coding Prrc2a proline rich coiled-coil 2A ASSOCIATED WITH megacolon (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); Transplant Rejection (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955437 161618 176225 + 102014284 AGCD01034107;AGCD01034108;GBDF01226148;XM_005389330;XR_261814 XP_005389387 MODEL 8830130 protein-coding Ndufs5 NADH:ubiquinone oxidoreductase subunit S5 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955452 16634537 16641344 + 102021835 AGCD01044521;GBDF01303828;XM_005395239;XM_005395240;XM_005395241;XM_005395242 XP_005395296;XP_005395297;XP_005395298;XP_005395299 MODEL 8887906 ncrna LOC102003861 uncharacterized LOC102003861 NW_004955472 10850722 10854380 + 102003861 AGCD01053727;GBDF01178480;XR_263568 MODEL 8839081 protein-coding Znf276 zinc finger protein 276 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); ASSOCIATED WITH autosomal recessive chronic granulomatous disease 4 (ortholog); Fanconi anemia (ortholog); Fanconi anemia complementation group A (ortholog); FOUND IN kinetochore (ortholog) NW_004955541 3259945 3272990 + 102017505 AGCD01071441;GBDF01154422;XM_005411064 XP_005411121 MODEL 9012095 protein-coding LOC102022830 melanoma-associated antigen 10-like NW_004955498 4162615 4163379 - 102022830 AGCD01062973;XM_005406482 XP_005406539 MODEL 10383222 ncrna LOC106149951 uncharacterized LOC106149951 NW_004955458 13289765 13293713 - 106149951 AGCD01047796;GBDF01164666;XR_001236444 MODEL 8877982 ncrna LOC102013339 uncharacterized LOC102013339 NW_004955437 18137771 18139577 + 102013339 AGCD01034777;XR_261891 MODEL 9014063 ncrna LOC102021113 uncharacterized LOC102021113 NW_004955413 17607365 17614888 + 102021113 AGCD01014159;GBDF01009939;XR_001233054;XR_001233055;XR_001233056;XR_260083;XR_260084 MODEL 9000066 pseudo LOC102005697 calcyclin-binding protein pseudogene NW_004955414 19427986 19428570 + 102005697 AGCD01015315 MODEL 9032245 protein-coding LOC102009028 uncharacterized LOC102009028 NW_004955411 2334442 2389596 - 102009028 AGCD01011505;AGCD01011506;XM_013510712 XP_013366166 MODEL 8724632 protein-coding LOC102008614 cytochrome c oxidase subunit 7A1, mitochondrial ENCODES a protein that exhibits cytochrome-c oxidase activity (ortholog); INVOLVED IN oxidative phosphorylation (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); dilated cardiomyopathy (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN mitochondrion (ortholog); respiratory chain complex IV (ortholog) NW_004955468 2442819 2445169 + 102008614 AGCD01051817;GBCQ01010676;XM_005399919 XP_005399976 MODEL 39133540 snrna U4 U4 spliceosomal RNA 8755730 ncrna LOC102019338 uncharacterized LOC102019338 NW_004955570 1719054 1724037 + 102019338 AGCD01074826;XR_265047 MODEL 9008896 protein-coding Kiss1 KiSS-1 metastasis suppressor ENCODES a protein that exhibits kisspeptin receptor binding (ortholog); INVOLVED IN decidualization (ortholog); G protein-coupled receptor signaling pathway (ortholog); generation of ovulation cycle rhythm (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Breast Neoplasms (ortholog); Delayed Puberty (ortholog); FOUND IN apical plasma membrane (ortholog); extracellular space (ortholog); neuronal cell body (ortholog) NW_004955406 40043139 40045973 - 102018891 AGCD01006652;GBCQ01059228;XM_005375288 XP_005375345 MODEL 39132472 snrna U6 U6 spliceosomal RNA 9029933 protein-coding Ppm1n protein phosphatase, Mg2+/Mn2+ dependent 1N (putative) ASSOCIATED WITH hereditary spastic paraplegia 12 (ortholog) NW_004955574 11728 16786 + 102012702 AGCD01075077;GBDF01178017;XM_013509550;XM_013509551;XM_013509553;XM_013509554;XM_013509555 XP_013365004;XP_013365005;XP_013365007;XP_013365008;XP_013365009 MODEL 8769339 protein-coding Taar5 trace amine associated receptor 5 ENCODES a protein that exhibits trace-amine receptor activity (ortholog); trimethylamine receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cognition (ortholog); sensory perception of chemical stimulus (ortholog); FOUND IN plasma membrane (ortholog) NW_004955436 13152345 13153358 - 102023071 AGCD01033854;XM_005389213 XP_005389270 MODEL 39133541 snrna U4 U4 spliceosomal RNA 8790109 protein-coding Tekt3 tektin 3 INVOLVED IN cilium assembly (ortholog); flagellated sperm motility (ortholog); regulation of brood size (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Charcot-Marie-Tooth disease type 1 (ortholog); FOUND IN acrosomal membrane (ortholog); acrosomal vesicle (ortholog); axonemal A tubule inner sheath (ortholog) NW_004955467 2347996 2381346 + 102020898 AGCD01051310;GBDF01051528;XM_005399332 XP_005399389 MODEL 8832082 protein-coding Wnt2b Wnt family member 2B INVOLVED IN canonical Wnt signaling pathway (ortholog); cellular response to starvation (ortholog); chondrocyte differentiation (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Diarrhea 9 (ortholog); endodermal sinus tumor (ortholog); Failure to Thrive (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog) NW_004955435 15948262 15962958 + 102003274 AGCD01033291;GBDF01056432;XM_005388958;XM_013516420 XP_005389015;XP_013371874 MODEL 8822685 ncrna LOC102015109 uncharacterized LOC102015109 NW_004955417 7902837 7947887 - 102015109 AGCD01018019;GBDF01304393;XR_001233465;XR_260465 MODEL 8828546 protein-coding LOC102024857 BMP-binding endothelial regulator protein-like NW_004955560 670132 868631 + 102024857 AGCD01073734;AGCD01073735;AGCD01073736;AGCD01073737;AGCD01073738;AGCD01073739;AGCD01073740;AGCD01073741;AGCD01073742;AGCD01073743;GBBH01210549;XM_005412992 XP_005413049 MODEL 8996610 ncrna LOC102017739 uncharacterized LOC102017739 NW_004955452 16271314 16273308 + 102017739 AGCD01044504;XR_262702 MODEL 9039309 protein-coding LOC102024500 vomeronasal type-2 receptor 116-like NW_004955524 669389 691978 + 102024500 AGCD01068689;AGCD01068690;AGCD01068691;XM_013507232 XP_013362686 MODEL 10093330 protein-coding LOC106149120 translation initiation factor IF-2-like NW_004955437 1780498 1781548 - 106149120 AGCD01034233;GBDF01146310;GBDF01146311;XM_013516973 XP_013372427 MODEL 8802824 protein-coding LOC102007158 histone-binding protein RBBP7-like NW_004955558 643112 644737 + 102007158 AGCD01073381;XM_013508855 XP_013364309 MODEL 8786671 ncrna LOC102023528 uncharacterized LOC102023528 NW_004955542 1901156 1906767 + 102023528 AGCD01071507;AGCD01071508;GBDJ01283811;XR_001232146;XR_264858 MODEL 8735671 protein-coding Trhde thyrotropin releasing hormone degrading enzyme ASSOCIATED WITH long QT syndrome (ortholog) NW_004955405 12229448 12624753 + 102006536 AGCD01004850;AGCD01004851;AGCD01004852;AGCD01004853;AGCD01004854;AGCD01004855;AGCD01004856;AGCD01004857;AGCD01004858;AGCD01004859;GBDI01314318;XM_005374325 XP_005374382 MODEL 9007740 protein-coding Sp140 SP140 nuclear body protein ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN fibrillar center (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955453 4864812 4911699 - 102008376 AGCD01044700;AGCD01044701;GBDI01121434;XM_013519810;XM_013519811 XP_013375264;XP_013375265 MODEL 9003056 ncrna LOC102013341 uncharacterized LOC102013341 NW_004955438 12804313 12806768 + 102013341 AGCD01035273;GBDF01040134;XR_261928 MODEL 8933691 protein-coding Slc35c1 solute carrier family 35 member C1 ENCODES a protein that exhibits GDP-fucose transmembrane transporter activity (ortholog); INVOLVED IN 'de novo' GDP-L-fucose biosynthetic process (ortholog); GDP-fucose import into Golgi lumen (ortholog); GDP-L-fucose salvage (ortholog); ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIc (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955422 2130561 2139145 - 102019508 AGCD01022480;AGCD01022481;GBDK01090342;XM_005384067;XM_005384068;XM_005384069;XM_005384070 XP_005384124;XP_005384125;XP_005384126;XP_005384127 MODEL 8810425 protein-coding Ndufs6 NADH:ubiquinone oxidoreductase subunit S6 INVOLVED IN cellular senescence (ortholog); circulatory system development (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 2 (ortholog); cervical cancer (ortholog); dopamine transporter deficiency syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955504 893112 903282 + 102009082 AGCD01064831;GBCQ01003517;XM_005407059 XP_005407116 MODEL 10240862 ncrna LOC106149952 uncharacterized LOC106149952 NW_004955458 4169038 4171209 + 106149952 AGCD01047379;GBDI01045785;XR_001236445 MODEL 8894087 pseudo LOC102023902 40S ribosomal protein S6 pseudogene NW_004955473 3056827 3058745 + 102023902 AGCD01053913 MODEL 8924114 protein-coding LOC102018096 serine/threonine-protein phosphatase 6 regulatory subunit 1 NW_004955483 7973276 8000527 + 102018096 AGCD01057823;GBDI01008367;GBDI01008376;XM_005403389;XM_005403390;XM_013503822;XM_013503823 XP_005403446;XP_005403447;XP_013359276;XP_013359277 MODEL 8730640 protein-coding LOC102005698 olfactory receptor 51I1-like NW_004955414 21369682 21370626 - 102005698 AGCD01015417;XM_005380087 XP_005380144 MODEL 8986507 pseudo LOC102019339 60S acidic ribosomal protein P1 pseudogene NW_004955578 1064468 1064879 - 102019339 AGCD01075508;XM_005414072;XM_005414073 MODEL 8963181 protein-coding Sirt2 sirtuin 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); histone acetyltransferase binding (ortholog); INVOLVED IN cellular response to caloric restriction (ortholog); cellular response to epinephrine stimulus (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN histone modification pathway; Sirtuin mediated pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); cocaine dependence (ortholog); high grade glioma (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); chromosome (ortholog) NW_004955468 626365 644441 + 102005244 AGCD01051719;GBDF01006521;XM_005399813;XM_005399815;XM_005399816;XM_005399817;XM_005399818;XM_005399819;XM_005399820 XP_005399870;XP_005399872;XP_005399873;XP_005399874;XP_005399875;XP_005399876;XP_005399877 MODEL 8931798 trna Trnas-aga transfer RNA serine (anticodon AGA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978802 AGCD01018131;AGCD01050593;AGCD01050595;AGCD01050596;AGCD01051466;AGCD01057629 MODEL 8969773 protein-coding Ralgapa1 Ral GTPase activating protein catalytic subunit alpha 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); negative regulation of DNA-binding transcription factor activity (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); long QT syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955409 25336503 25582881 + 102027724 AGCD01010113;AGCD01010114;AGCD01010115;AGCD01010116;AGCD01010117;AGCD01010118;GBDF01112173;XM_005376915;XM_005376917;XM_005376919;XM_013510369;XM_013510370;XM_013510371;XM_013510372;XM_013510373 XP_005376972;XP_005376974;XP_005376976;XP_013365823;XP_013365824;XP_013365825;XP_013365826;XP_013365827 MODEL 8790446 protein-coding Krt3 keratin 3 INVOLVED IN intermediate filament cytoskeleton organization (ortholog); ASSOCIATED WITH Meesmann corneal dystrophy 2 (ortholog); polycystic ovary syndrome (ortholog) NW_004955458 92436 98334 - 102007632 AGCD01047106;GBDK01391325;XM_005397128 XP_005397185 MODEL 8856953 protein-coding Sgce sarcoglycan epsilon INVOLVED IN kidney development (ortholog); skeletal muscle tissue development (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome classic type 1 (ortholog); genetic disease (ortholog); movement disease (ortholog); FOUND IN dendrite membrane (ortholog); dystrophin-associated glycoprotein complex (ortholog); Golgi apparatus (ortholog) NW_004955432 11310488 11383803 - 102013326 AGCD01030945;AGCD01030946;AGCD01030947;GBDI01385644;XM_005388045;XM_005388047;XM_005388048;XM_005388049;XM_013516087;XM_013516088;XM_013516089 XP_005388102;XP_005388104;XP_005388105;XP_005388106;XP_013371541;XP_013371542;XP_013371543 MODEL 10218143 ncrna LOC106146842 uncharacterized LOC106146842 NW_004955497 5719905 5735387 + 106146842 AGCD01062611;GBDF01057414;XR_001231445 MODEL 8816187 protein-coding Scml2 Scm polycomb group protein like 2 INVOLVED IN anatomical structure morphogenesis (ortholog); apoptotic process (ortholog); protein localization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Coffin-Lowry syndrome (ortholog); developmental and epileptic encephalopathy 2 (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog); PcG protein complex (ortholog) NW_004955519 16839 84226 + 102029780 AGCD01067854;GBDF01157400;XM_005409124;XM_005409125 XP_005409181;XP_005409182 MODEL 8897100 protein-coding Tekt5 tektin 5 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 1C (ortholog); Landau-Kleffner syndrome (ortholog); MHC class II deficiency (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955442 7740611 7778130 + 102008462 AGCD01037628;GBDF01008212;XM_005391187 XP_005391244 MODEL 8967716 ncrna LOC102022833 uncharacterized LOC102022833 NW_004955426 23883090 23887811 + 102022833 AGCD01026659;GBDF01127000;XR_261218 MODEL 8975743 pseudo LOC102024501 protein DBF4 homolog A-like NW_004955435 9744623 9748017 + 102024501 AGCD01033062;AGCD01033063 MODEL 8898501 protein-coding Prrc2b proline rich coiled-coil 2B INVOLVED IN in utero embryonic development (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955513 1137099 1187724 + 102022524 AGCD01066845;GBDF01085170;XM_005408365;XM_005408368;XM_005408369;XM_005408370;XM_013506607;XM_013506608 XP_005408422;XP_005408425;XP_005408426;XP_005408427;XP_013362061;XP_013362062 MODEL 8796836 pseudo LOC102012095 heterogeneous nuclear ribonucleoprotein M pseudogene NW_004955417 9967960 9969097 + 102012095 AGCD01018063 MODEL 10338236 ncrna LOC106149121 uncharacterized LOC106149121 NW_004955437 1980961 1981628 - 106149121 AGCD01034248;GBCE01033789;XR_001235082 MODEL 8790591 protein-coding Bdh2 3-hydroxybutyrate dehydrogenase 2 ENCODES a protein that exhibits 3-hydroxybutyrate dehydrogenase activity (ortholog); NAD binding (ortholog); oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor (ortholog); INVOLVED IN epithelial cell differentiation (ortholog); fatty acid beta-oxidation (ortholog); siderophore biosynthetic process (ortholog); ASSOCIATED WITH beta-mannosidosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955496 5518403 5534325 + 102012338 AGCD01062355;XM_005406232 XP_005406289 MODEL 9002678 protein-coding Qser1 glutamine and serine rich 1 ASSOCIATED WITH intellectual disability (ortholog) NW_004955422 13207000 13287585 - 102025916 AGCD01022815;AGCD01022816;AGCD01022817;GBCE01001035;GBDF01236338;XM_005384170 XP_005384227 MODEL 39132473 snrna U6 U6 spliceosomal RNA 10207427 ncrna LOC106149953 uncharacterized LOC106149953 NW_004955458 276608 281685 - 106149953 AGCD01047116;GBDF01116207;XR_001236446;XR_001236447 MODEL 8711176 pseudo LOC102012100 target of rapamycin complex 2 subunit MAPKAP1-like NW_004955421 30163102 30165459 + 102012100 AGCD01022382 MODEL 9020884 pseudo LOC102018098 dnaJ homolog subfamily A member 1 pseudogene NW_004955420 13182480 13183950 + 102018098 AGCD01020916 MODEL 8817241 protein-coding Ndufs7 NADH:ubiquinone oxidoreductase core subunit S7 ENCODES a protein that exhibits monooxygenase activity (ortholog); NADH dehydrogenase (ubiquinone) activity (ortholog); NADH dehydrogenase activity (ortholog); INVOLVED IN mitochondrial electron transport, NADH to ubiquinone (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); PARTICIPATES IN doxorubicin pharmacokinetics pathway; ASSOCIATED WITH bipolar disorder (ortholog); cerebral creatine deficiency syndrome (ortholog); COVID-19 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); neuronal cell body (ortholog) NW_004955495 6540360 6548072 - 102006930 AGCD01062085;GBCB01003829;XM_005405978 XP_005406035 MODEL 39132474 snrna U6 U6 spliceosomal RNA 8759565 ncrna LOC102003862 uncharacterized LOC102003862 NW_004955474 6739005 6740107 + 102003862 AGCD01054490;GBDF01162687;XR_263599 MODEL 8840099 ncrna LOC102015110 uncharacterized LOC102015110 NW_004955417 26741909 26744748 + 102015110 AGCD01018514;GBDF01188695;XR_001233422;XR_260501 MODEL 9004919 protein-coding LOC102018101 arylacetamide deacetylase-like 4 NW_004955486 1192855 1214886 - 102018101 AGCD01058932;AGCD01058933;AGCD01058934;AGCD01058935;GBCE01042716;XM_013504149 XP_013359603 MODEL 9026504 protein-coding Znf277 zinc finger protein 277 ENCODES a protein that exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); regulation of cellular senescence (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); pleomorphic xanthoastrocytoma (ortholog); schizophrenia (ortholog) NW_004955410 15971524 16083482 + 102014652 AGCD01010946;AGCD01010947;GBDF01304288;XM_005377315;XM_005377316;XM_005377317;XM_005377318;XM_013510634 XP_005377372;XP_005377373;XP_005377374;XP_005377375;XP_013366088 MODEL 8721742 protein-coding Ndufs8 NADH:ubiquinone oxidoreductase core subunit S8 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); NADH dehydrogenase activity (ortholog); INVOLVED IN mitochondrial electron transport, NADH to ubiquinone (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); genetic disease (ortholog); immunodeficiency 90 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955422 17781374 17785395 - 102007780 AGCD01022932;GBDK01002250;XM_005384289;XM_013514041 XP_005384346;XP_013369495 MODEL 10115476 protein-coding LOC106146844 uncharacterized LOC106146844 NW_004955497 126347 158375 + 106146844 AGCD01062401;AGCD01062402;XM_013505516 XP_013360970 MODEL 8864798 protein-coding LOC102009030 olfactory receptor 8B12-like NW_004955412 25540272 25542114 - 102009030 AGCD01013160;GBDI01315433;XM_005378423 XP_005378480 MODEL 9032666 pseudo LOC102024503 probable ribosome biogenesis protein RLP24 pseudogene NW_004955534 1615395 1615936 - 102024503 AGCD01070504 MODEL 8913397 protein-coding Sp2 Sp2 transcription factor ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); histone deacetylase binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN circulatory system development (ortholog); embryonic organ development (ortholog); fibroblast proliferation (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955451 13205463 13231181 - 102012492 AGCD01043460;AGCD01043461;AGCD01043462;GBDI01263587;XM_005394259;XM_005394260;XM_005394261 XP_005394316;XP_005394317;XP_005394318 MODEL 10172415 protein-coding LOC106146845 collagen alpha-1(III) chain-like NW_004955498 7210979 7218221 + 106146845 AGCD01063145;AGCD01063146;XM_013505531 XP_013360985 MODEL 8786214 protein-coding Plekhg5 pleckstrin homology and RhoGEF domain containing G5 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN endothelial cell chemotaxis (ortholog); endothelial cell migration (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 14 (ortholog); autosomal recessive distal hereditary motor neuronopathy 4 (ortholog); Charcot-Marie-Tooth disease recessive intermediate C (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); endocytic vesicle (ortholog) NW_004955486 6099654 6121805 + 102010165 AGCD01059108;GBBH01085966;XM_005404088;XM_013504284;XM_013504285;XM_013504286;XM_013504288 XP_005404145;XP_013359738;XP_013359739;XP_013359740;XP_013359742 MODEL 8956478 pseudo LOC102007468 UMP-CMP kinase pseudogene NW_004955540 3132229 3136955 - 102007468 AGCD01071335 MODEL 8771540 protein-coding Rfx3 regulatory factor X3 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell maturation (ortholog); cilium assembly (ortholog); cilium-dependent cell motility (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); attention deficit hyperactivity disorder (ortholog); autism spectrum disorder (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955434 7635363 7910056 - 102019728 AGCD01032243;AGCD01032244;AGCD01032245;AGCD01032246;AGCD01032247;GBDF01254252;XM_005388617;XM_013516355;XM_013516356;XM_013516357;XM_013516358;XM_013516359;XM_013516360 XP_005388674;XP_013371809;XP_013371810;XP_013371811;XP_013371812;XP_013371813;XP_013371814 MODEL 8944242 protein-coding LOC102024860 paired immunoglobulin-like type 2 receptor beta NW_004955573 573997 576636 - 102024860 AGCD01074993;GBCE01148433;GBDK01137312;XM_013509497 XP_013364951 MODEL 39131450 protein-coding WNT3 Wnt family member 3 9040485 pseudo LOC102017740 methylosome subunit pICln-like NW_004955452 6163421 6165157 + 102017740 AGCD01044092 MODEL 8739986 protein-coding Sp3 Sp3 transcription factor ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN B cell differentiation (ortholog); definitive hemopoiesis (ortholog); embryonic camera-type eye morphogenesis (ortholog); ASSOCIATED WITH split hand-foot malformation 5 (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955449 1347781 1404368 + 102008905 AGCD01041796;AGCD01041797;AGCD01041798;AGCD01041799;AGCD01041800;GBBH01098526;XM_005393193 XP_005393250 MODEL 8864949 protein-coding Lmf1 lipase maturation factor 1 INVOLVED IN chylomicron remnant clearance (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); positive regulation of lipoprotein lipase activity (ortholog); ASSOCIATED WITH epilepsy (ortholog); familial lipase maturation factor 1 deficiency (ortholog); Hypertriglyceridemia (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955442 16250131 16360907 + 102013881 AGCD01037893;AGCD01037894;AGCD01037895;AGCD01037896;AGCD01037897;AGCD01037898;GBDJ01272886;XM_005391597 XP_005391654 MODEL 8895770 protein-coding Ppm1f protein phosphatase, Mg2+/Mn2+ dependent 1F ENCODES a protein that exhibits calmodulin-dependent protein phosphatase activity (ortholog); phosphoprotein phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN cellular response to xenobiotic stimulus (ortholog); intracellular signal transduction (ortholog); negative regulation of cell-cell adhesion mediated by cadherin (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; calcium/calmodulin dependent kinase 2 signaling pathway; ASSOCIATED WITH chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog); FOUND IN cytosol (ortholog); perinuclear region of cytoplasm (ortholog); protein-containing complex (ortholog) NW_004955442 17233258 17256009 + 102016525 AGCD01037946;AGCD01037947;GBCB01067010;XM_013517654 XP_013373108 MODEL 8860006 ncrna LOC102007469 uncharacterized LOC102007469 NW_004955439 19369735 19412284 - 102007469 AGCD01036083;GBDF01112984;XR_001235205;XR_261997 MODEL 8913725 protein-coding Krt35 keratin 35 NW_004955451 15820687 15824284 - 102029144 AGCD01043637;GBDI01352709;XM_005394401 XP_005394458 MODEL 8974410 pseudo LOC102023530 speckle-type POZ protein A-like NW_004955546 148556 149744 + 102023530 AGCD01071954 MODEL 8857165 protein-coding Trhr thyrotropin releasing hormone receptor ENCODES a protein that exhibits identical protein binding (ortholog); thyrotropin-releasing hormone receptor activity (ortholog); INVOLVED IN positive regulation of cytosolic calcium ion concentration (ortholog); positive regulation of protein-containing complex assembly (ortholog); ASSOCIATED WITH congenital hypothyroidism (ortholog); congenital nongoitrous hypothyroidism 7 (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog) NW_004955417 16529293 16565359 + 102021761 AGCD01018264;AGCD01018265;AGCD01018266;XM_005381876 XP_005381933 MODEL 9055045 ncrna LOC102013342 uncharacterized LOC102013342 NW_004955440 5501646 5568701 - 102013342 AGCD01036274;AGCD01036275;AGCD01036276;GBCE01049183;XR_001235281;XR_001235282;XR_001235283 MODEL 9005085 protein-coding Znf280a zinc finger protein 280A ASSOCIATED WITH chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog) NW_004955455 6893363 6899637 - 102022670 AGCD01045818;GBDF01192110;XM_005396357;XM_005396358 XP_005396414;XP_005396415 MODEL 8702457 protein-coding Sparcl1 SPARC like 1 INVOLVED IN regulation of synapse organization (ortholog); synaptic membrane adhesion (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); corneal dystrophy (ortholog); endometriosis (ortholog); FOUND IN extracellular matrix of synaptic cleft (ortholog); glutamatergic synapse (ortholog) NW_004955474 2352662 2387237 + 102015104 AGCD01054289;AGCD01054290;AGCD01054291;GBDJ01018536;XM_005401335;XM_013502717 XP_005401392;XP_013358171 MODEL 9064995 protein-coding Lmf2 lipase maturation factor 2 ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog) NW_004955413 33487970 33492033 - 102003532 AGCD01014672;GBDK01128390;XM_005379576 XP_005379633 MODEL 8724659 protein-coding LOC102009784 small proline-rich protein 2E NW_004955592 315272 316198 + 102009784 AGCD01076302;XM_005414611 XP_005414668 MODEL 8814870 protein-coding LOC102005700 uncharacterized LOC102005700 NW_004955470 11975332 11978904 - 102005700 AGCD01052916;GBCQ01088386;XM_013522705 XP_013378159 MODEL 8791764 ncrna LOC102009031 uncharacterized LOC102009031 NW_004955413 3100551 3144356 - 102009031 AGCD01013567;AGCD01013568;GBBH01229827;XR_001233023;XR_001233024;XR_001233025;XR_001233026;XR_001233027 MODEL 9055588 protein-coding Ppme1 protein phosphatase methylesterase 1 ENCODES a protein that exhibits lncRNA binding (ortholog); protein C-terminal methylesterase activity (ortholog); protein kinase binding (ortholog); INVOLVED IN protein phosphorylation (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog) NW_004955414 17384695 17444269 - 102009272 AGCD01015241;GBDK01143985;XM_005379925 XP_005379982 MODEL 8735330 ncrna LOC102024506 uncharacterized LOC102024506 NW_004955540 1866085 1875395 - 102024506 AGCD01071308;GBCE01172657;XR_264820 MODEL 8894285 protein-coding Tab1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 ENCODES a protein that exhibits kinase activator activity (ortholog); MAP kinase kinase kinase activity (ortholog); mitogen-activated protein kinase p38 binding (ortholog); INVOLVED IN aorta development (ortholog); cardiac septum development (ortholog); coronary vasculature development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; interleukin-1 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); polycystic ovary syndrome (ortholog); Rubinstein-Taybi syndrome (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955413 25290733 25315267 + 102029384 AGCD01014401;GBDK01062559;XM_005379290 XP_005379347 MODEL 8877944 protein-coding Triap1 TP53 regulated inhibitor of apoptosis 1 ENCODES a protein that exhibits p53 binding (ortholog); phosphatidic acid transfer activity (ortholog); INVOLVED IN cellular response to UV (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); mitotic G1 DNA damage checkpoint signaling (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955455 11195399 11198402 + 102011402 AGCD01045986;GBCQ01036220;XM_005396508 XP_005396565 MODEL 8997551 protein-coding Pip5kl1 phosphatidylinositol-4-phosphate 5-kinase like 1 ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); INVOLVED IN negative regulation of cell migration (ortholog); negative regulation of mitochondrial membrane potential (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Iu (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); FOUND IN cell projection (ortholog); cytosol (ortholog) NW_004955419 745400 753819 + 102021661 AGCD01019608;GBCE01103174;XM_005382394;XM_013513157;XM_013513158;XM_013513159;XM_013513160;XM_013513161 XP_005382451;XP_013368611;XP_013368612;XP_013368613;XP_013368614;XP_013368615 MODEL 8926576 protein-coding LOC102006039 uncharacterized LOC102006039 NW_004955491 8353014 8354199 + 102006039 AGCD01060614;GBCB01010474;XM_013504570 XP_013360024 MODEL 8949666 protein-coding Qsox1 quiescin sulfhydryl oxidase 1 ENCODES a protein that exhibits FAD binding (ortholog); flavin-dependent sulfhydryl oxidase activity (ortholog); protein disulfide isomerase activity (ortholog); INVOLVED IN extracellular matrix assembly (ortholog); negative regulation of macroautophagy (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN extracellular exosome (ortholog); extracellular space (ortholog); Golgi apparatus (ortholog) NW_004955406 19363938 19402134 + 102023111 AGCD01006078;AGCD01006079;AGCD01006080;AGCD01006081;AGCD01006082;GBDF01002852;GBDI01262267;XM_005375463;XM_013521310 XP_005375520;XP_013376764 MODEL 8873850 protein-coding Rbm33 RNA binding motif protein 33 ENCODES a protein that exhibits lncRNA binding (ortholog); N6-methyladenosine-containing RNA reader activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN regulation of mRNA stability (ortholog); RNA export from nucleus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); holoprosencephaly 3 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955491 8534093 8633838 + 102018611 AGCD01060617;AGCD01060618;AGCD01060619;GBDF01052102;XM_005404864;XM_005404865;XM_005404866;XM_005404868;XM_013504634 XP_005404921;XP_005404922;XP_005404923;XP_005404925;XP_013360088 MODEL 8885925 protein-coding Ralgapa2 Ral GTPase activating protein catalytic subunit alpha 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); Ral protein signal transduction (ortholog); regulation of exocyst localization (ortholog); ASSOCIATED WITH familial hyperinsulinemic hypoglycemia 1 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955415 28414856 28663485 - 102022075 AGCD01016641;AGCD01016642;AGCD01016643;GBCQ01150403;XM_005380947;XM_013512249 XP_005381004;XP_013367703 MODEL 8798443 protein-coding Epha8 EPH receptor A8 ENCODES a protein that exhibits ephrin receptor activity (ortholog); GPI-linked ephrin receptor activity (ortholog); growth factor binding (ortholog); INVOLVED IN axon guidance (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); ephrin receptor signaling pathway (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); congenital disorder of glycosylation Ir (ortholog); High Myopia (ortholog); FOUND IN neuron projection (ortholog); plasma membrane (ortholog) NW_004955452 2702277 2729161 + 102012603 AGCD01043903;GBDF01242136;XM_013519449;XR_001236014 XP_013374903 MODEL 8889320 pseudo LOC102024507 kinesin-associated protein 3-like NW_004955437 19627016 19630188 + 102024507 AGCD01034861 MODEL 8830928 pseudo LOC102024862 cytochrome P450 2B4-like NW_004955578 145655 157755 + 102024862 AGCD01075465 MODEL 39133047 snrna U6 U6 spliceosomal RNA 8785986 pseudo LOC102022836 60S ribosomal protein L12 pseudogene NW_004955506 1962800 1963394 - 102022836 AGCD01065281;XR_264369 MODEL 8808267 protein-coding LOC102015113 dipeptidase 3 NW_004955484 8736208 8740848 + 102015113 AGCD01058396;GBDF01003211;XM_005403593 XP_005403650 MODEL 8794937 protein-coding Slc35c2 solute carrier family 35 member C2 INVOLVED IN fucosylation (ortholog); negative regulation of gene expression (ortholog); positive regulation of Notch signaling pathway (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog) NW_004955445 10984675 10996707 + 102019861 AGCD01039680;GBDF01155404;XM_005392381;XM_005392383;XM_013518297;XM_013518298;XM_013518299;XM_013518300;XM_013518301;XM_013518302 XP_005392438;XP_005392440;XP_013373751;XP_013373752;XP_013373753;XP_013373754;XP_013373755;XP_013373756 MODEL 9031261 protein-coding Wnt3a Wnt family member 3A ENCODES a protein that exhibits co-receptor binding (ortholog); frizzled binding (ortholog); identical protein binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); axis elongation involved in somitogenesis (ortholog); axon guidance (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Experimental Mammary Neoplasms (ortholog); gastrointestinal stromal tumor (ortholog); hypothyroidism (ortholog); FOUND IN cell surface (ortholog); extracellular space (ortholog); glutamatergic synapse (ortholog) NW_004955581 351375 382541 - 102016538 AGCD01075667;AGCD01075668;AGCD01075669;GBDK01185286;XM_005414244 XP_005414301 MODEL 39133048 snrna U6 U6 spliceosomal RNA 8832040 protein-coding Krt36 keratin 36 ENCODES a protein that exhibits structural constituent of skin epidermis (ortholog); INVOLVED IN regulation of keratinocyte differentiation (ortholog); FOUND IN intermediate filament cytoskeleton (ortholog); keratin filament (ortholog) NW_004955451 15828596 15837892 - 102029469 AGCD01043637;GBDF01112881;XM_005394402 XP_005394459 MODEL 8896374 protein-coding LOC102007471 very-long-chain 3-oxoacyl-CoA reductase-B-like NW_004955555 2234031 2248419 + 102007471 AGCD01073138;AGCD01073139;AGCD01073140;GBDF01155567;XM_005412503 XP_005412560 MODEL 8770712 protein-coding LOC102024508 forkhead box protein L1 NW_004955541 1387390 1392842 + 102024508 AGCD01071378;AGCD01071379;GBCE01132585;GBCE01150013;XM_013508009 XP_013363463 MODEL 8763331 protein-coding Sirt3 sirtuin 3 ENCODES a protein that exhibits enzyme binding (ortholog); NAD-dependent protein lysine deacetylase activity (ortholog); NAD-dependent protein lysine delactylase activity (ortholog); INVOLVED IN aerobic respiration (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); negative regulation of peptidyl-lysine acetylation (ortholog); PARTICIPATES IN histone modification pathway; Sirtuin mediated pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); Alzheimer's disease (ortholog); Beckwith-Wiedemann syndrome (ortholog); FOUND IN membrane (ortholog); mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog) NW_004955476 11794951 11826244 + 102028186 AGCD01055474;AGCD01055475;GBBH01140166;XM_005401880;XM_005401881;XM_005401882;XM_005401884;XM_005401885;XM_013502916 XP_005401937;XP_005401938;XP_005401939;XP_005401941;XP_005401942;XP_013358370 MODEL 10181310 ncrna LOC106146846 uncharacterized LOC106146846 NW_004955407 41806830 41809223 + 106146846 AGCD01007882;GBDI01348734;XR_001231446;XR_001231447;XR_001231448;XR_001231449 MODEL 39133049 snrna U6 U6 spliceosomal RNA 9064101 protein-coding Lmln leishmanolysin like peptidase ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytosol (ortholog); focal adhesion (ortholog) NW_004955420 11867034 11953303 - 102026643 AGCD01020841;AGCD01020842;AGCD01020843;AGCD01020844;AGCD01020845;AGCD01020846;AGCD01020847;AGCD01020848;GBCE01119901;GBCQ01076834;XM_013513591 XP_013369045 MODEL 8824980 protein-coding LOC102021119 uncharacterized LOC102021119 NW_004955414 26399001 26401431 - 102021119 AGCD01015642;AGCD01015643;XM_013511742 XP_013367196 MODEL 8853998 protein-coding LOC102024510 zinc finger protein 709-like NW_004955546 400816 405424 - 102024510 AGCD01071973;XM_013508420 XP_013363874 MODEL 8952678 protein-coding LOC102008615 zinc finger protein 792 NW_004955468 4295637 4302563 - 102008615 AGCD01051905;GBCQ01021284;XM_013522370;XM_013522371;XM_013522372;XM_013522373 XP_013377824;XP_013377825;XP_013377826;XP_013377827 MODEL 8795758 ncrna LOC102018106 uncharacterized LOC102018106 NW_004955422 17085787 17105838 - 102018106 AGCD01022909;AGCD01022910;AGCD01022911;AGCD01022912;GBDJ01421050;XR_001233992 MODEL 39133050 snrna U6 U6 spliceosomal RNA 8954227 protein-coding LOC102003863 protocadherin beta-7 NW_004955415 12610873 12620570 - 102003863 AGCD01016207;AGCD01016208;XM_013512126 XP_013367580 MODEL 8770583 protein-coding Vars2 valyl-tRNA synthetase 2, mitochondrial ENCODES a protein that exhibits valine-tRNA ligase activity (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 1 (ortholog); combined oxidative phosphorylation deficiency 20 (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955583 848166 862360 + 102021820 AGCD01075870;AGCD01075871;GBBH01166970;GBCE01031371;XM_005414326 XP_005414383 MODEL 8719462 protein-coding Lmna lamin A/C ENCODES a protein that exhibits identical protein binding (ortholog); protein phosphatase 1 binding (ortholog); structural constituent of nuclear lamina (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular senescence (ortholog); DNA double-strand break attachment to nuclear envelope (ortholog); PARTICIPATES IN atherosclerosis pathway; ASSOCIATED WITH achalasia (ortholog); aortic valve disease 2 (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); FOUND IN lamin filament (ortholog); nuclear envelope (ortholog); nuclear lamina (ortholog) NW_004955545 2290076 2310982 + 102018770 AGCD01071894;AGCD01071895;GBBH01034310;XM_005411648;XM_013508332 XP_005411705;XP_013363786 MODEL 8868781 protein-coding Ralgapb Ral GTPase activating protein non-catalytic subunit beta ENCODES a protein that exhibits GTPase activator activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); Ral protein signal transduction (ortholog); regulation of exocyst localization (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); focal epilepsy (ortholog); High Myopia (ortholog) NW_004955445 18146316 18241128 - 102010426 AGCD01039898;AGCD01039899;AGCD01039900;AGCD01039901;GBCE01075919;XM_005392533;XM_005392534;XM_013518287;XM_013518288 XP_005392590;XP_005392591;XP_013373741;XP_013373742 MODEL 8786652 pseudo LOC102022837 archaemetzincin-2 pseudogene NW_004955509 2246030 2248708 - 102022837 AGCD01065994 MODEL 9025380 ncrna LOC102019342 uncharacterized LOC102019342 NW_004955402 25014435 25015928 + 102019342 AGCD01000650;GBDF01055968;XR_259067 MODEL 10140019 protein-coding LOC106149954 translation initiation factor IF-2-like NW_004955458 329439 331047 - 106149954 AGCD01047119;GBBH01141876;GBDK01081827;XM_013520875 XP_013376329 MODEL 9010934 protein-coding LOC102008619 E3 ISG15--protein ligase HERC5-like NW_004955474 12020037 12065002 - 102008619 AGCD01054645;AGCD01054646;GBBH01011708;GBCE01069694;XM_013502751 XP_013358205 MODEL 8731398 pseudo LOC102009787 glucose 1,6-bisphosphate synthase pseudogene NW_004955402 47456121 47465974 - 102009787 AGCD01001183;AGCD01001184;AGCD01001185;AGCD01001186;AGCD01001187 MODEL 8883307 protein-coding Znf280b zinc finger protein 280B ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog) NW_004955455 6866576 6888907 - 102023226 AGCD01045816;AGCD01045817;AGCD01045818;GBDJ01339624;XM_005396359;XM_005396360 XP_005396416;XP_005396417 MODEL 8967123 protein-coding Spart spartin ENCODES a protein that exhibits lipid binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN adipose tissue development (ortholog); BMP signaling pathway (ortholog); cell division (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); esophagus adenocarcinoma (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955431 9758159 9786468 + 102029649 AGCD01030193;AGCD01030194;GBDF01133087;XM_005387685;XM_005387686 XP_005387742;XP_005387743 MODEL 10394534 ncrna LOC106149955 uncharacterized LOC106149955 NW_004955458 5199214 5213527 + 106149955 AGCD01047467;AGCD01047468;AGCD01047469;GBCE01149790;XR_001236448 MODEL 8738868 protein-coding LOC102006044 uncharacterized LOC102006044 NW_004955423 26874436 26882443 - 102006044 AGCD01024108;GBDJ01373506;XM_013514385 XP_013369839 MODEL 8818567 protein-coding Scml4 Scm polycomb group protein like 4 ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog) NW_004955411 32940367 33036779 - 102009810 AGCD01012340;AGCD01012341;AGCD01012342;GBDK01071981;XM_005377840;XM_013510901;XM_013510902 XP_005377897;XP_013366355;XP_013366356 MODEL 8907185 pseudo LOC102017743 UPF0160 protein MYG1, mitochondrial pseudogene NW_004955454 2036921 2037774 + 102017743 AGCD01045001 MODEL 10358979 protein-coding LOC106146847 uncharacterized LOC106146847 NW_004955498 2387483 2388677 - 106146847 AGCD01062791;GBDF01095154;XM_013505539 XP_013360993 MODEL 8883480 protein-coding Trib1 tribbles pseudokinase 1 ENCODES a protein that exhibits mitogen-activated protein kinase kinase binding (ortholog); protein kinase binding (ortholog); protein kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of DNA-binding transcription factor activity (ortholog); negative regulation of JNK cascade (ortholog); negative regulation of lipopolysaccharide-mediated signaling pathway (ortholog); ASSOCIATED WITH coronary artery disease (ortholog); Hypertriglyceridemia (ortholog); metabolic dysfunction-associated steatotic liver disease (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955461 494003 501928 + 102030050 AGCD01048795;GBDF01159528;XM_005397987 XP_005398044 MODEL 8989445 protein-coding S100a13 S100 calcium binding protein A13 ENCODES a protein that exhibits calcium ion binding (ortholog); copper ion binding (ortholog); fibroblast growth factor binding (ortholog); INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of cell population proliferation (ortholog); positive regulation of cytokine production (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular space (ortholog) NW_004955545 266674 282408 - 102016637 AGCD01071781;GBDI01022123;XM_005411432;XM_005411433;XM_005411435;XM_013508324;XM_013508325;XM_013508326;XM_013508327;XM_013508328;XM_013508329;XM_013508330;XM_013508331 XP_005411489;XP_005411490;XP_005411492;XP_013363778;XP_013363779;XP_013363780;XP_013363781;XP_013363782;XP_013363783;XP_013363784;XP_013363785 MODEL 8855373 protein-coding Ndufv1 NADH:ubiquinone oxidoreductase core subunit V1 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); INVOLVED IN mitochondrial ATP synthesis coupled electron transport (ortholog); mitochondrial electron transport, NADH to ubiquinone (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive spinocerebellar ataxia 8 (ortholog); Disease Progression (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955422 17876496 17881773 - 102012442 AGCD01022932;GBDJ01074830;XM_005384306 XP_005384363 MODEL 8700751 ncrna LOC102023532 uncharacterized LOC102023532 NW_004955442 14977428 14983811 - 102023532 AGCD01037853;GBDI01024349;XR_262149 MODEL 9019464 ncrna LOC102017747 uncharacterized LOC102017747 NW_004955409 1823879 1847047 - 102017747 AGCD01009184;GBDK01374880;XR_259745 MODEL 8840284 protein-coding Prrc2c proline rich coiled-coil 2C INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); stress granule assembly (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (ortholog) NW_004955406 12087072 12165266 + 102022880 AGCD01005906;AGCD01005907;AGCD01005908;AGCD01005909;GBBH01092333;GBDF01126038;XM_005374839;XM_013520642 XP_005374896;XP_013376096 MODEL 9049230 ncrna LOC102013345 uncharacterized LOC102013345 NW_004955442 8943995 9025234 - 102013345 AGCD01037655;AGCD01037656;AGCD01037657;AGCD01037658;AGCD01037659;AGCD01037660;GBDF01040016;XR_262126 MODEL 8828839 protein-coding Bdkrb1 bradykinin receptor B1 ENCODES a protein that exhibits bradykinin receptor activity (ortholog); peptide binding (ortholog); INVOLVED IN cell migration (ortholog); cyclooxygenase pathway (ortholog); negative regulation of blood pressure (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphai family; G protein mediated signaling pathway via Galphaq family; kallikrein-kinin cascade pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Diabetes Complications (ortholog); diabetic angiopathy (ortholog) NW_004955438 16500219 16505394 - 102014289 AGCD01035420;GBDJ01390087;XM_005390373 XP_005390430 MODEL 8762871 pseudo LOC102012105 39S ribosomal protein L33, mitochondrial pseudogene NW_004955425 1338173 1339060 + 102012105 AGCD01025221;XM_005386083 MODEL 8877016 protein-coding Wnt4 Wnt family member 4 ENCODES a protein that exhibits frizzled binding (ortholog); receptor ligand activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN adrenal gland development (ortholog); apoptotic signaling pathway (ortholog); branching involved in ureteric bud morphogenesis (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); 46,XX Sex Reversal with Dysgenesis of Kidneys, Adrenals, and Lungs (ortholog); acute kidney failure (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular matrix (ortholog) NW_004955452 2319446 2344740 - 102006534 AGCD01043890;AGCD01043891;GBDF01041136;XM_005394734 XP_005394791 MODEL 8748199 protein-coding LOC102009035 uncharacterized LOC102009035 NW_004955413 33713020 33714649 + 102009035 AGCD01014688;GBDI01173861;XM_013511547;XM_013511548 XP_013367001;XP_013367002 MODEL 8989873 protein-coding Ralgds ral guanine nucleotide dissociation stimulator ENCODES a protein that exhibits GTPase regulator activity (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN brush border (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955513 2386293 2405161 - 102006939 AGCD01066878;GBCE01096266;GBDF01128189;XM_005408411 XP_005408468 MODEL 8755597 protein-coding Sgcg sarcoglycan gamma INVOLVED IN gene expression (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2C (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2D (ortholog); FOUND IN dystroglycan complex (ortholog); plasma membrane (ortholog); sarcoglycan complex (ortholog) NW_004955497 3592041 3702780 + 102013189 AGCD01062549;AGCD01062550;AGCD01062551;AGCD01062552;GBCB01003278;GBDI01356297;XM_005406371 XP_005406428 MODEL 39132475 snrna U6 U6 spliceosomal RNA 8848527 ncrna LOC102021122 uncharacterized LOC102021122 NW_004955478 2702024 2708949 + 102021122 AGCD01055802;GBDF01209258;XR_263686 MODEL 8767798 protein-coding Pipox pipecolic acid and sarcosine oxidase ENCODES a protein that exhibits L-pipecolate oxidase activity (ortholog); sarcosine oxidase activity (ortholog); INVOLVED IN L-lysine catabolic process to acetyl-CoA via L-pipecolate (ortholog); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; glutaric aciduria type I pathway; hyperlysinemia pathway; ASSOCIATED WITH peroxisomal disease (ortholog); FOUND IN peroxisome (ortholog) NW_004955481 4128503 4225027 - 102015954 AGCD01056931;AGCD01056932;GBDI01245274;XM_005402697;XM_013503421;XM_013503422 XP_005402754;XP_013358875;XP_013358876 MODEL 39132478 snrna U6 U6 spliceosomal RNA 8823913 protein-coding Wnt5a Wnt family member 5A ENCODES a protein that exhibits chemoattractant activity involved in axon guidance (ortholog); cytokine activity (ortholog); frizzled binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); anterior/posterior axis specification, embryo (ortholog); anterior/posterior pattern specification (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; Wnt signaling, non-canonical pathway; ASSOCIATED WITH autosomal dominant Robinow syndrome 1 (ortholog); colon cancer (ortholog); Dwarfism (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog); extracellular space (ortholog) NW_004955430 5304817 5325684 - 102006806 AGCD01029259;AY463493;GBCE01188526;GBDJ01145960;XM_005387380 XP_005387437 MODEL 9059971 protein-coding Znf280c zinc finger protein 280C ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955473 4783540 4854872 + 102007991 AGCD01053960;AGCD01053961;GBDK01190110;XM_005401240;XM_005401241;XM_005401242 XP_005401297;XP_005401298;XP_005401299 MODEL 8928785 protein-coding Ephb1 EPH receptor B1 ENCODES a protein that exhibits axon guidance receptor activity (ortholog); protein tyrosine kinase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN angiogenesis (ortholog); axon guidance (ortholog); camera-type eye morphogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH aortic dissection (ortholog); autistic disorder (ortholog); COVID-19 (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955501 3424112 3821727 - 102020266 AGCD01064105;AGCD01064106;GBDF01113237;XM_005406784 XP_005406841 MODEL 8819312 protein-coding Htr4 5-hydroxytryptamine receptor 4 ENCODES a protein that exhibits G protein-coupled serotonin receptor activity (ortholog); serotonin receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-activating serotonin receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN serotonin signaling pathway via receptors engaging G alphas protein family; ASSOCIATED WITH Anorexia (ortholog); anorexia nervosa (ortholog); atrial fibrillation (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); membrane (ortholog) NW_004955415 5745056 5802409 + 102004471 AGCD01015998;AGCD01015999;AGCD01016000;AGCD01016001;XM_013512121 XP_013367575 MODEL 8871430 pseudo LOC102018108 60S ribosomal protein L9 pseudogene NW_004955424 10648402 10648984 - 102018108 AGCD01024523 MODEL 8969156 protein-coding Scn10a sodium voltage-gated channel alpha subunit 10 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN AV node cell action potential (ortholog); behavioral response to pain (ortholog); bundle of His cell action potential (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); Brugada syndrome (ortholog); FOUND IN axon (ortholog); C-fiber (ortholog); clathrin complex (ortholog) NW_004955427 25157179 25244020 + 102029206 AGCD01027535;AGCD01027536;AGCD01027537;GBDF01255242;XM_005386574;XM_005386575;XM_005386576;XM_005386577;XM_013515027 XP_005386631;XP_005386632;XP_005386633;XP_005386634;XP_013370481 MODEL 39132479 snrna U6 U6 spliceosomal RNA 8962982 protein-coding Ndufv2 NADH:ubiquinone oxidoreductase core subunit V2 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); INVOLVED IN cardiac muscle tissue development (ortholog); mitochondrial electron transport, NADH to ubiquinone (ortholog); nervous system development (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); cardiomyopathy (ortholog); chromosome 18p deletion syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955402 2802366 2818049 - 102026370 AGCD01000091;GBDF01008260;GBDI01016025;XM_013516007 XP_013371461 MODEL 8899639 protein-coding Wnt5b Wnt family member 5B ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN chondrocyte differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); positive regulation of cell migration (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog) NW_004955454 4158648 4192709 + 102025082 AGCD01045118;AGCD01045119;GBDK01139056;XM_005395951;XM_005395953;XM_013520275;XM_013520276;XM_013520277 XP_005396008;XP_005396010;XP_013375729;XP_013375730;XP_013375731 MODEL 8760026 protein-coding Krt39 keratin 39 NW_004955451 15383334 15391573 - 102021200 AGCD01043606;GBDF01058346;XM_005394378 XP_005394435 MODEL 8956492 pseudo LOC102008621 josephin-1 pseudogene NW_004955477 274210 274810 + 102008621 AGCD01055485 MODEL 8983318 protein-coding Rfx4 regulatory factor X4 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cilium assembly (ortholog); negative regulation of smoothened signaling pathway (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN nucleus (ortholog) NW_004955405 40483391 40648992 + 102022457 AGCD01005518;AGCD01005519;AGCD01005520;AGCD01005521;AGCD01005522;GBDF01004566;XM_005374622;XM_005374623;XM_005374624;XM_005374625 XP_005374679;XP_005374680;XP_005374681;XP_005374682 MODEL 8924496 protein-coding LOC102007472 hemoglobin subunit zeta NW_004955442 17015120 17016686 - 102007472 AGCD01037931;XM_005391674 XP_005391731 MODEL 9040095 protein-coding Scn11a sodium voltage-gated channel alpha subunit 11 ENCODES a protein that exhibits voltage-gated sodium channel activity (ortholog); INVOLVED IN action potential (ortholog); action potential initiation (ortholog); acute inflammatory response (ortholog); ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 14 (ortholog); Brugada syndrome (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN axon (ortholog); axonal growth cone (ortholog); C-fiber (ortholog) NW_004955427 24917709 25109499 + 102028878 AGCD01027525;AGCD01027526;AGCD01027527;AGCD01027528;AGCD01027529;AGCD01027530;AGCD01027531;AGCD01027532;GBDF01016590;XM_013515078;XM_013515079 XP_013370532;XP_013370533 MODEL 8718679 protein-coding Kiss1r KISS1 receptor ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); neuropeptide binding (ortholog); neuropeptide receptor activity (ortholog); INVOLVED IN arachidonate secretion (ortholog); calcium-mediated signaling (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH breast cancer (ortholog); central precocious puberty 1 (ortholog); cerebral creatine deficiency syndrome (ortholog); FOUND IN cell surface (ortholog); cilium (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955495 6918632 6921891 - 102017471 AGCD01062100;GBDI01039469;XM_005406013;XM_013505106 XP_005406070;XP_013360560 MODEL 9057089 protein-coding Qsox2 quiescin sulfhydryl oxidase 2 ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN Golgi apparatus (ortholog); nucleoplasm (ortholog) NW_004955513 4438078 4463276 + 102013529 AGCD01066927;GBDK01241930;XM_005408519 XP_005408576 MODEL 10195714 ncrna LOC106149956 uncharacterized LOC106149956 NW_004955458 12865762 12870002 + 106149956 AGCD01047791;GBDF01252519;XR_001236451 MODEL 9008684 protein-coding Ndufv3 NADH:ubiquinone oxidoreductase subunit V3 INVOLVED IN mitochondrial ATP synthesis coupled electron transport (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH cataract 9 multiple types (ortholog); developmental and epileptic encephalopathy 30 (ortholog); homocystinuria (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955407 39029943 39039425 - 102007972 AGCD01007821;GBCQ01008885;XM_005375804;XM_005375805;XM_005375806;XM_013505043 XP_005375861;XP_005375862;XP_005375863;XP_013360497 MODEL 8967288 pseudo LOC102006045 60S ribosomal protein L31 pseudogene NW_004955495 3574458 3577550 + 102006045 AGCD01061862;XM_005406145 MODEL 8852042 protein-coding Spast spastin ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); microtubule binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); axonal transport of mitochondrion (ortholog); cytokinetic process (ortholog); ASSOCIATED WITH Autoinflammation with Infantile Enterocolitis (ortholog); cerebral palsy (ortholog); epilepsy (ortholog); FOUND IN axon (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955441 471609 521920 + 102021282 AGCD01036708;AGCD01036709;AGCD01036710;GBDF01089066;GBDI01079613;XM_013517607 XP_013373061 MODEL 39133051 snrna U6 U6 spliceosomal RNA 9052884 ncrna LOC102015116 uncharacterized LOC102015116 NW_004955486 3132448 3142983 + 102015116 AGCD01059018;GBDI01107855;XR_263945 MODEL 10070073 protein-coding LOC106149957 uncharacterized LOC106149957 NW_004955458 15204473 15214967 - 106149957 AGCD01047874;AGCD01047875;AGCD01047876;GBBH01193369;GBDK01117171;XM_013520901 XP_013376355 MODEL 8886306 ncrna LOC102006049 uncharacterized LOC102006049 NW_004955425 7368402 7403190 + 102006049 AGCD01025384;GBDF01196098;XR_001234261;XR_001234262;XR_001234263;XR_001234264 MODEL 8968369 protein-coding Lmnb1 lamin B1 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); phospholipase binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cellular response to 2,3,7,8-tetrachlorodibenzodioxine (ortholog); cellular response to corticosterone stimulus (ortholog); cellular response to L-glutamate (ortholog); ASSOCIATED WITH adult onset demyelinating leukodystrophy (ortholog); Animal Disease Models (ortholog); atypical autosomal dominant adult-onset demyelinating leukodystrophy (ortholog); FOUND IN lamin filament (ortholog); nuclear envelope (ortholog); nuclear inner membrane (ortholog) NW_004955521 4583691 4612271 + 102020157 AGCD01068273;GBBH01026773;XM_013507092 XP_013362546 MODEL 39133052 snrna U6 U6 spliceosomal RNA 8733126 ncrna LOC102017748 uncharacterized LOC102017748 NW_004955409 7814743 7821735 - 102017748 AGCD01009366;AGCD01009367;GBDF01207876;XR_001232620;XR_259757 MODEL 9029961 protein-coding S100a14 S100 calcium binding protein A14 ENCODES a protein that exhibits chemokine receptor binding (ortholog); INVOLVED IN defense response to bacterium (ortholog); positive regulation of granulocyte chemotaxis (ortholog); positive regulation of monocyte chemotaxis (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog) NW_004955545 261483 263689 - 102014174 AGCD01071781;GBDJ01073258;XM_005411418 XP_005411475 MODEL 8727567 protein-coding Tab2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 ENCODES a protein that exhibits K63-linked polyubiquitin modification-dependent protein binding (ortholog); molecular adaptor activity (ortholog); zinc ion binding (ortholog); INVOLVED IN defense response to bacterium (ortholog); heart development (ortholog); inflammatory response (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; interleukin-1 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH brain disease (ortholog); cardiomyopathy (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN cytoplasm (ortholog) NW_004955439 11826469 11903103 - 102014175 AGCD01035924;AGCD01035925;GBCB01022887;XM_005390614;XM_005390615;XM_005390616;XM_013517374;XM_013517375;XM_013517376 XP_005390671;XP_005390672;XP_005390673;XP_013372828;XP_013372829;XP_013372830 MODEL 8949339 protein-coding LOC102009788 vomeronasal type-1 receptor 4-like NW_004955603 389482 390411 - 102009788 AGCD01076843;XM_005414844 XP_005414901 MODEL 39131417 protein-coding SP3 Sp3 transcription factor 8818045 protein-coding Bdkrb2 bradykinin receptor B2 ENCODES a protein that exhibits beta-2 adrenergic receptor binding (ortholog); bradykinin receptor activity (ortholog); protease binding (ortholog); INVOLVED IN acute inflammatory response to antigenic stimulus (ortholog); arachidonate secretion (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphai family; G protein mediated signaling pathway via Galphaq family; kallikrein-kinin cascade pathway; ASSOCIATED WITH acute kidney failure (ortholog); acute myeloid leukemia (ortholog); Animal Disease Models (ortholog); FOUND IN endosome (ortholog); plasma membrane (ortholog) NW_004955438 16514300 16537160 - 102014608 AGCD01035420;AGCD01035421;GBDJ01225170;XM_005390374;XM_005390375 XP_005390431;XP_005390432 MODEL 8912484 protein-coding Ppm1g protein phosphatase, Mg2+/Mn2+ dependent 1G ENCODES a protein that exhibits phosphoprotein phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN peptidyl-threonine dephosphorylation (ortholog); protein dephosphorylation (ortholog); regulation of cell cycle (ortholog); ASSOCIATED WITH schizophrenia (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955469 9344968 9350123 - 102004592 AGCD01052498;GBDJ01076537;GBDJ01076538;XM_005400501 XP_005400558 MODEL 9056296 protein-coding Lmnb2 lamin B2 ENCODES a protein that exhibits identical protein binding (ortholog); structural constituent of cytoskeleton (ortholog); ASSOCIATED WITH autosomal dominant primary microcephaly 27 (ortholog); Myoclonic Epilepsies (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN lamin filament (ortholog); nuclear envelope (ortholog); nuclear lamina (ortholog) NW_004955495 4826653 4851984 - 102009293 AGCD01061953;AGCD01061954;AGCD01061955;AGCD01061956;AGCD01061957;AGCD01061958;GBCB01086244;GBDI01188605;XM_013505227 XP_013360681 MODEL 39133542 snrna U4 U4 spliceosomal RNA 9065779 pseudo LOC102024865 ubiquitin-associated protein 2-like pseudogene NW_004955584 410429 414515 + 102024865 AGCD01075941;XR_265114 MODEL 8759788 protein-coding S100a16 S100 calcium binding protein A16 ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN response to calcium ion (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular space (ortholog) NW_004955545 254370 260471 - 102013649 AGCD01071781;GBCE01004299;XM_005411416;XM_005411417 XP_005411473;XP_005411474 MODEL 8740288 protein-coding Rfx5 regulatory factor X5 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of MHC class II biosynthetic process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Dravet syndrome (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955588 687086 695696 - 102004022 AGCD01076118;GBCQ01031430;XM_005414519;XM_005414520;XM_005414522;XM_005414523;XM_013509923;XM_013509924;XM_013509925 XP_005414576;XP_005414577;XP_005414579;XP_005414580;XP_013365377;XP_013365378;XP_013365379 MODEL 8980969 protein-coding Slc35d1 solute carrier family 35 member D1 ENCODES a protein that exhibits antiporter activity (ortholog); pyrimidine nucleotide-sugar transmembrane transporter activity (ortholog); INVOLVED IN embryonic skeletal system development (ortholog); obsolete chondroitin sulfate biosynthetic process (ortholog); pyrimidine nucleotide-sugar transmembrane transport (ortholog); ASSOCIATED WITH congenital disorder of glycosylation It (ortholog); connective tissue disease (ortholog); Craniofacial Abnormalities (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955423 23945729 23969929 + 102016614 AGCD01024026;AGCD01024027;GBBH01050955;GBCE01009175;XM_005385278;XM_013514495 XP_005385335;XP_013369949 MODEL 8723146 protein-coding Vash1 vasohibin 1 ENCODES a protein that exhibits actin binding (ortholog); metallocarboxypeptidase activity (ortholog); INVOLVED IN angiogenesis (ortholog); labyrinthine layer blood vessel development (ortholog); negative regulation of angiogenesis (ortholog); ASSOCIATED WITH intellectual disability (ortholog); liver cirrhosis (ortholog); portal hypertension (ortholog); FOUND IN apical part of cell (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955438 753392 772937 + 102029999 AGCD01034962;AGCD01034963;GBDF01086610;XM_013517177;XM_013517178;XM_013517179 XP_013372631;XP_013372632;XP_013372633 MODEL 8803593 protein-coding Plekhg6 pleckstrin homology and RhoGEF domain containing G6 ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); FOUND IN cell junction (ortholog); centrosome (ortholog) NW_004955413 3969459 3982348 + 102012179 AGCD01013590;AGCD01013591;GBBH01193665;XM_005378757 XP_005378814 MODEL 8770691 protein-coding LOC102022839 olfactory receptor 5M8-like NW_004955511 1659389 1660327 - 102022839 AGCD01066377;XM_005408239 XP_005408296 MODEL 9043415 protein-coding LOC102023534 putative P2Y purinoceptor 10 NW_004955557 1986541 2035879 + 102023534 AGCD01073319;AGCD01073320;AGCD01073321;GBCE01162977;XM_005412638;XM_005412639;XM_005412640;XM_013508834;XM_013508835;XM_013508836;XM_013508837 XP_005412695;XP_005412696;XP_005412697;XP_013364288;XP_013364289;XP_013364290;XP_013364291 MODEL 8774565 ncrna LOC102015119 uncharacterized LOC102015119 NW_004955422 11663140 11693220 - 102015119 AGCD01022765;GBDJ01194024;XR_001234030;XR_001234031;XR_001234032;XR_260865 MODEL 8705029 protein-coding Tektip1 tektin bundle interacting protein 1 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); RASopathy (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955495 5504867 5507412 + 102005485 AGCD01062009;GBDI01020557;XM_005405875;XM_005405876 XP_005405932;XP_005405933 MODEL 8746266 protein-coding Slc35d2 solute carrier family 35 member D2 ENCODES a protein that exhibits nucleotide-sugar transmembrane transporter activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955422 23544376 23582585 + 102011129 AGCD01023195;AGCD01023196;AGCD01023197;GBBH01107187;GBCB01051625;XM_013514308 XP_013369762 MODEL 10093347 ncrna LOC106149958 uncharacterized LOC106149958 NW_004955458 3546091 3548041 + 106149958 AGCD01047317;XR_001236452 MODEL 8745488 protein-coding Rfx6 regulatory factor X6 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN endocrine pancreas development (ortholog); glucose homeostasis (ortholog); pancreatic A cell differentiation (ortholog); ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); diabetes mellitus (ortholog); FOUND IN nucleus (ortholog) NW_004955436 213810 278699 + 102007270 AGCD01033537;AGCD01033538;AGCD01033539;GBDF01078446;XM_005389119 XP_005389176 MODEL 8810101 protein-coding LOC102021124 probable E3 ubiquitin-protein ligase makorin-3 NW_004955416 31052017 31052794 + 102021124 AGCD01017724;XM_013512430 XP_013367884 MODEL 8807547 protein-coding Bdnf brain derived neurotrophic factor ENCODES a protein that exhibits neurotrophin TRKB receptor binding (ortholog); INVOLVED IN axon extension (ortholog); axon guidance (ortholog); axon target recognition (ortholog); PARTICIPATES IN brain-derived neurotrophic factor signaling pathway; ASSOCIATED WITH inner ear disease; acoustic neuroma (ortholog); acute stress disorder (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955476 6773244 6822201 - 102016703 AGCD01055340;AGCD01055341;GBDK01412054;XM_005401751;XM_005401752;XM_005401753;XM_013503014;XM_013503015 XP_005401808;XP_005401809;XP_005401810;XP_013358468;XP_013358469 MODEL 8959807 protein-coding Rfx7 regulatory factor X7 ENCODES a protein that exhibits RNA polymerase II core promoter sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 71 with behavioral abnormalities (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN nucleus (ortholog) NW_004955409 59535 121157 + 102006985 AGCD01009138;GBDI01261564;XM_005376598;XM_005376600;XM_005376601 XP_005376655;XP_005376657;XP_005376658 MODEL 8797777 protein-coding Htr5a 5-hydroxytryptamine receptor 5A ENCODES a protein that exhibits G protein-coupled serotonin receptor activity (ortholog); Gi/o-coupled serotonin receptor activity (ortholog); serotonin receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-inhibiting serotonin receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger (ortholog); ASSOCIATED WITH autistic disorder (ortholog); holoprosencephaly 3 (ortholog); intracranial hypertension (ortholog); FOUND IN dendrite (ortholog); perikaryon (ortholog); plasma membrane (ortholog) NW_004955491 8258032 8266503 + 102017028 AGCD01060611;XM_005404860 XP_005404917 MODEL 8799794 ncrna LOC102007160 uncharacterized LOC102007160 NW_004955443 4405793 4414236 + 102007160 AGCD01038213;GBDF01080321;XR_262175 MODEL 8702353 ncrna LOC102012107 uncharacterized LOC102012107 NW_004955504 1489501 1499030 + 102012107 AGCD01064841;GBDI01349444;XR_264287 MODEL 9030494 protein-coding S100a3 S100 calcium binding protein A3 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955545 195834 205442 - 102012686 AGCD01071776;GBDJ01404708;XM_005411412;XM_005411413;XM_013508202;XM_013508203;XM_013508204 XP_005411469;XP_005411470;XP_013363656;XP_013363657;XP_013363658 MODEL 8780748 protein-coding Ephb2 EPH receptor B2 ENCODES a protein that exhibits amyloid-beta binding (ortholog); axon guidance receptor activity (ortholog); ephrin receptor activity (ortholog); INVOLVED IN angiogenesis (ortholog); animal organ morphogenesis (ortholog); axon guidance (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; syndecan signaling pathway; ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); Alzheimer's disease (ortholog); Anorectal Malformations (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); dendrite (ortholog) NW_004955452 2844713 2986790 + 102010660 AGCD01043905;AGCD01043906;AGCD01043907;GBBH01093218;XM_005394747;XM_005394748;XM_013519671 XP_005394804;XP_005394805;XP_013375125 MODEL 8823216 pseudo LOC102007161 zinc finger protein 451 pseudogene NW_004955444 72378 78511 + 102007161 AGCD01038648;AGCD01038649 MODEL 8837727 ncrna LOC102023906 uncharacterized LOC102023906 NW_004955477 1104231 1106691 + 102023906 AGCD01055502;GBDI01036993;XR_001230815;XR_263650 MODEL 8716588 protein-coding LOC102009036 60S ribosomal protein L5 NW_004955469 9922760 9923788 - 102009036 AGCD01052521;XM_005400516 XP_005400573 MODEL 8872103 ncrna LOC102009790 uncharacterized LOC102009790 NW_004955403 20132939 20135472 - 102009790 AGCD01002154;GBDJ01243887;XR_259189 MODEL 8750731 pseudo LOC102023536 speckle-type POZ protein pseudogene NW_004955560 68646 70938 + 102023536 AGCD01073706 MODEL 8869635 pseudo LOC102015120 protein phosphatase 1A pseudogene NW_004955423 28444139 28445298 - 102015120 AGCD01024148;XR_261017 MODEL 8746835 pseudo LOC102007162 protein Red-like NW_004955565 2044877 2054593 - 102007162 AGCD01074340 MODEL 8908732 protein-coding Tab3 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 ENCODES a protein that exhibits K63-linked polyubiquitin modification-dependent protein binding (ortholog); molecular adaptor activity (ortholog); zinc ion binding (ortholog); INVOLVED IN defense response to bacterium (ortholog); non-canonical NF-kappaB signal transduction (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; nuclear factor kappa B signaling pathway; Toll-like receptor signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Duchenne muscular dystrophy (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955535 3547556 3612705 + 102029792 AGCD01070703;GBCE01186737;XM_005410491;XM_005410492;XM_005410493;XM_005410494;XM_005410496;XM_013507711;XM_013507712;XM_013507713;XM_013507714 XP_005410548;XP_005410549;XP_005410550;XP_005410551;XP_005410553;XP_013363165;XP_013363166;XP_013363167;XP_013363168 MODEL 39133543 snrna U4 U4 spliceosomal RNA 8903751 protein-coding Spata1 spermatogenesis associated 1 FOUND IN acrosomal vesicle (ortholog); cytoplasmic vesicle (ortholog) NW_004955423 9336208 9384727 - 102030090 AGCD01023657;GBDF01083446;GBDJ01155884;XM_005385158 XP_005385215 MODEL 8796089 protein-coding Scn1a sodium voltage-gated channel alpha subunit 1 ENCODES a protein that exhibits voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN adult walking behavior (ortholog); cardiac muscle cell action potential involved in contraction (ortholog); detection of mechanical stimulus involved in sensory perception of pain (ortholog); ASSOCIATED WITH absence epilepsy (ortholog); asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); intercalated disc (ortholog) NW_004955449 8072910 8220763 + 102009237 AGCD01042008;XM_005393285;XM_005393286;XM_005393287;XM_013518812 XP_005393342;XP_005393343;XP_005393344;XP_013374266 MODEL 8890532 protein-coding LOC102013346 carcinoembryonic antigen-related cell adhesion molecule 1-like NW_004955555 1051737 1061066 - 102013346 AGCD01073056;AGCD01073057;GBDJ01174557;XM_005412433 XP_005412490 MODEL 8858821 ncrna LOC102018111 uncharacterized LOC102018111 NW_004955499 5787418 5804841 - 102018111 AGCD01063529;GBDJ01146430;XR_264221 MODEL 8817467 protein-coding LOC102021128 olfactory receptor 2T1 ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955418 30198087 30199058 - 102021128 AGCD01019506;XM_005382335 XP_005382392 MODEL 8827353 protein-coding LOC102015122 probable N-acetyltransferase CML3 NW_004955424 12100191 12102196 + 102015122 AGCD01024595;GBDF01057633;XM_005385559 XP_005385616 MODEL 39132480 snrna U6 U6 spliceosomal RNA 39133053 snrna U6 U6 spliceosomal RNA 8928098 pseudo LOC102017753 peptidyl-prolyl cis-trans isomerase G pseudogene NW_004955411 11900324 11902482 - 102017753 AGCD01011834 MODEL 8799943 protein-coding Htr6 5-hydroxytryptamine receptor 6 ENCODES a protein that exhibits G protein-coupled serotonin receptor activity (ortholog); serotonin receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating serotonin receptor signaling pathway (ortholog); cerebral cortex cell migration (ortholog); G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger (ortholog); PARTICIPATES IN serotonin signaling pathway via receptors engaging G alphas protein family; ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); Alzheimer's disease (ortholog); amphetamine abuse (ortholog); FOUND IN cilium (ortholog); dendrite (ortholog); plasma membrane (ortholog) NW_004955452 323641 338312 + 102013466 AGCD01043808;GBCE01082577;XM_005394663 XP_005394720 MODEL 8837526 protein-coding Sgcz sarcoglycan zeta ASSOCIATED WITH amphetamine abuse (ortholog); skin disease (ortholog); FOUND IN plasma membrane (ortholog); sarcoglycan complex (ortholog) NW_004955463 2114115 3127633 + 102013394 AGCD01049539;AGCD01049540;AGCD01049541;AGCD01049542;AGCD01049543;AGCD01049544;AGCD01049545;AGCD01049546;AGCD01049547;AGCD01049548;AGCD01049549;AGCD01049550;AGCD01049551;AGCD01049552;AGCD01049553;AGCD01049554;AGCD01049555;AGCD01049556;AGCD01049557;AGCD01049558;AGCD01049559;AGCD01049560;AGCD01049561;AGCD01049562;AGCD01049563;AGCD01049564;AGCD01049565;AGCD01049566;AGCD01049567;AGCD01049568;AGCD01049569;AGCD01049570;AGCD01049571;AGCD01049572;AGCD01049573;AGCD01049574;AGCD01049575;AGCD01049576;AGCD01049577;GBDF01041307;XM_005398345 XP_005398402 MODEL 39133054 snrna U6 U6 spliceosomal RNA 8918248 protein-coding Tektl1 tektin like 1 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN axonemal B tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955495 8258304 8264462 - 102013944 AGCD01062195;GBDF01045979;XM_005406100 XP_005406157 MODEL 8870464 pseudo LOC102015126 coiled-coil-helix-coiled-coil-helix domain-containing protein 2 pseudogene NW_004955498 607912 608495 + 102015126 AGCD01062723 MODEL 8752232 ncrna LOC102005701 uncharacterized LOC102005701 NW_004955471 8033027 8043382 + 102005701 AGCD01053175;GBDF01122898;XR_263529 MODEL 9038628 pseudo LOC102023907 coatomer subunit delta pseudogene NW_004955478 318751 320471 + 102023907 AGCD01055736;XR_263727 MODEL 39133055 snrna U6 U6 spliceosomal RNA 8779596 ncrna LOC102024871 uncharacterized LOC102024871 NW_004955405 30030297 30033266 - 102024871 AGCD01005263;GBBH01225824;XR_259412 MODEL 8926503 protein-coding Dennd5a DENN domain containing 5A ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN negative regulation of neuron projection development (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 49 (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog); retromer complex (ortholog); trans-Golgi network (ortholog) NW_004955414 24861950 24955031 - 102027063 AGCD01015559;AGCD01015560;AGCD01015561;AGCD01015562;AGCD01015563;GBDF01050600;XM_005380255 XP_005380312 MODEL 8941266 protein-coding Bdp1 BDP1 general transcription factor IIIB subunit PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 2 deficiency (ortholog); autosomal recessive nonsyndromic deafness 112 (ortholog); Deafness (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955575 330683 430269 + 102027917 AGCD01075218;AGCD01075219;AGCD01075220;AGCD01075221;GBDF01178164;XM_005413925;XM_005413926;XM_005413927;XM_005413928;XM_005413930 XP_005413982;XP_005413983;XP_005413984;XP_005413985;XP_005413987 MODEL 39133544 snrna U4 U4 spliceosomal RNA 9013315 protein-coding Prrg1 proline rich and Gla domain 1 ASSOCIATED WITH autistic disorder (ortholog); McLeod syndrome (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955587 289906 388534 - 102010848 AGCD01076063;AGCD01076064;GBDK01324063;XM_005414447;XM_013509903 XP_005414504;XP_013365357 MODEL 39133056 snrna U6 U6 spliceosomal RNA 8994049 protein-coding Sirt4 sirtuin 4 ENCODES a protein that exhibits lipoamidase activity (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD-dependent protein biotinidase activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); DNA damage response (ortholog); glutamine metabolic process (ortholog); PARTICIPATES IN histone modification pathway; Sirtuin mediated pathway; ASSOCIATED WITH Cardiomegaly (ortholog); endomyocardial fibrosis (ortholog); Insulin Resistance (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955455 11322812 11334786 - 102013381 AGCD01045997;GBCB01086523;XM_005396513;XM_005396514 XP_005396570;XP_005396571 MODEL 8933510 ncrna LOC102008623 uncharacterized LOC102008623 NW_004955479 10170741 10180244 - 102008623 AGCD01056526;AGCD01056527;GBDI01103470;XR_263739 MODEL 8874072 pseudo LOC102024875 sorting nexin-6 pseudogene NW_004955454 3324571 3326595 + 102024875 AGCD01045066 MODEL 8995118 protein-coding Slc35d3 solute carrier family 35 member D3 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); UDP-glucose transmembrane transporter activity (ortholog); INVOLVED IN energy homeostasis (ortholog); platelet dense granule organization (ortholog); positive regulation of autophagy (ortholog); ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); immunodeficiency 27A (ortholog); Nontuberculous Mycobacterium Infections (ortholog); FOUND IN early endosome (ortholog); early endosome membrane (ortholog); endoplasmic reticulum (ortholog) NW_004955439 60689 63968 - 102019203 AGCD01035579;XM_005390458 XP_005390515 MODEL 8711849 protein-coding LOC102003870 eotaxin NW_004955481 9017930 9020436 + 102003870 AGCD01057092;GBDF01030595;XM_005402838 XP_005402895 MODEL 9058565 protein-coding Trib2 tribbles pseudokinase 2 ENCODES a protein that exhibits nucleotide binding (ortholog); protein kinase activity (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN negative regulation of fat cell differentiation (ortholog); negative regulation of interleukin-10 production (ortholog); positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cytoplasm (ortholog) NW_004955487 6889571 6915068 + 102008735 AGCD01059386;GBCE01170233;XM_005404436;XM_013504382;XM_013504383 XP_005404493;XP_013359836;XP_013359837 MODEL 8729440 protein-coding Ppm1h protein phosphatase, Mg2+/Mn2+ dependent 1H ENCODES a protein that exhibits identical protein binding (ortholog); phosphoprotein phosphatase activity (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); nucleoplasm (ortholog) NW_004955458 9742629 9899167 - 102007198 AGCD01047661;AGCD01047662;AGCD01047663;AGCD01047664;AGCD01047665;GBBH01091029;XM_013520940 XP_013376394 MODEL 8969933 protein-coding Sp4 Sp4 transcription factor ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN regulation of heart contraction (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); congenital heart disease (ortholog); dilated cardiomyopathy (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955410 23955408 24015667 + 102004910 AGCD01011120;AGCD01011121;GBCB01019139;XM_005377368;XM_005377370 XP_005377425;XP_005377427 MODEL 9028747 protein-coding LOC102007473 N-formyl peptide receptor 2-like NW_004955558 724982 760617 - 102007473 AGCD01073387;AGCD01073388;AGCD01073389;GBDK01358972;XM_005412669;XM_013508868;XM_013508869 XP_005412726;XP_013364322;XP_013364323 MODEL 10297441 protein-coding Dennd5b DENN domain containing 5B ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN positive regulation of triglyceride transport (ortholog) NW_004955505 4134686 4295112 + 106146927 AGCD01065092;AGCD01065093;AGCD01065094;AGCD01065095;AGCD01065096;GBDF01118818;XM_013505934 XP_013361388 MODEL 8833959 pseudo LOC102017756 ADP-ribosylation factor 1-like NW_004955467 8516546 8517706 + 102017756 AGCD01051452 MODEL 9051831 protein-coding Kit KIT proto-oncogene, receptor tyrosine kinase ENCODES a protein that exhibits cytokine binding (ortholog); protease binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cell chemotaxis (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); acute myeloid leukemia (ortholog); acute pancreatitis (ortholog); FOUND IN acrosomal vesicle (ortholog); cell surface (ortholog); cell-cell junction (ortholog) NW_004955447 16149014 16226151 - 102007952 AGCD01041077;GBDJ01350236;XM_013518572;XM_013518573;XM_013518575 XP_013374026;XP_013374027;XP_013374029 MODEL 8968359 ncrna LOC102019343 uncharacterized LOC102019343 NW_004955450 1860097 1867224 + 102019343 AGCD01042371;GBDF01194629;XR_262521 MODEL 8891776 protein-coding LOC102023537 CD209 antigen-like protein C NW_004955563 1506889 1511879 + 102023537 AGCD01074150;GBDI01304009;XM_005413155;XM_005413156 XP_005413212;XP_005413213 MODEL 9063625 protein-coding LOC102007164 zinc finger protein 709-like NW_004955569 1445074 1480352 + 102007164 AGCD01074655;AGCD01074656;GBDF01080557;XM_013509372;XM_013509373 XP_013364826;XP_013364827 MODEL 8921651 protein-coding LOC102005702 chromosome unknown open reading frame, human C11orf58 ASSOCIATED WITH intellectual disability (ortholog) NW_004955414 31621806 31642993 + 102005702 AGCD01015759;GBDF01005761;XM_005380367;XM_005380368 XP_005380424;XP_005380425 MODEL 8991873 protein-coding Tac1 tachykinin precursor 1 ENCODES a protein that exhibits neuromedin K receptor binding (ortholog); receptor ligand activity (ortholog); substance K receptor binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); associative learning (ortholog); cellular response to nerve growth factor stimulus (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); allergic disease (ortholog); amnestic disorder (ortholog); FOUND IN axon (ortholog); extracellular region (ortholog); extracellular space (ortholog) NW_004955432 13991647 13999665 + 102022114 AGCD01031034;GBDI01209813;XM_005388077;XM_005388078;XM_005388079;XM_005388080 XP_005388134;XP_005388135;XP_005388136;XP_005388137 MODEL 8705090 protein-coding Scn1b sodium voltage-gated channel beta subunit 1 ENCODES a protein that exhibits sodium channel inhibitor activity (ortholog); sodium channel regulator activity (ortholog); INVOLVED IN axon guidance (ortholog); cardiac conduction (ortholog); cardiac muscle cell action potential involved in contraction (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH asphyxiating thoracic dystrophy 3 (ortholog); benign epilepsy with centrotemporal spikes (ortholog); Brugada syndrome (ortholog); FOUND IN intercalated disc (ortholog); node of Ranvier (ortholog); plasma membrane (ortholog) NW_004955468 4375517 4383383 + 102009704 AGCD01051908;GBDI01008492;GBDJ01353495;XM_013522375 XP_013377829 MODEL 8722973 protein-coding Plekhg7 pleckstrin homology and RhoGEF domain containing G7 NW_004955405 29703523 29760551 + 102022562 AGCD01005256;GBDJ01353997;XM_005374457;XM_005374459;XM_005374460;XM_013518255;XM_013518257;XM_013518258;XM_013518264;XM_013518269;XM_013518275 XP_005374514;XP_005374516;XP_005374517;XP_013373709;XP_013373711;XP_013373712;XP_013373718;XP_013373723;XP_013373729 MODEL 8943156 protein-coding Wnt6 Wnt family member 6 INVOLVED IN axis specification (ortholog); branching involved in ureteric bud morphogenesis (ortholog); epithelial-mesenchymal cell signaling (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); Animal Mammary Neoplasms (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog) NW_004955453 14547427 14560001 - 102003202 AGCD01044869;AGCD01044870;GBBH01046953;GBDJ01266063;XM_005395621 XP_005395678 MODEL 8794244 protein-coding LOC102019345 formin-like protein 16 NW_004955450 7449780 7452569 - 102019345 AGCD01042538;GBDK01081219;XM_005393672 XP_005393729 MODEL 8709322 protein-coding Kitlg KIT ligand ENCODES a protein that exhibits cytokine activity (ortholog); stem cell factor receptor binding (ortholog); INVOLVED IN apoptotic process (ortholog); cell population proliferation (ortholog); ectopic germ cell programmed cell death (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); autosomal dominant nonsyndromic deafness 69 (ortholog); carcinoma (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog); filopodium (ortholog) NW_004955405 25816137 25969006 - 102012494 AGCD01005186;AGCD01005187;AGCD01005188;AGCD01005189;AGCD01005190;AGCD01005191;AGCD01005192;GBDJ01354458;XM_005374430;XM_005374432;XM_013518150;XM_013518152;XR_001235502 XP_005374487;XP_005374489;XP_013373604;XP_013373606 MODEL 8901152 trna Trnas-cga transfer RNA serine (anticodon CGA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955501;NW_004955465;NW_004955465;NW_004955467 1580746;13301831;13138748;8814367 1580827;13301912;13138829;8814448 +;-;+;+ 101978805 AGCD01050590;AGCD01050597;AGCD01051472;AGCD01064055 MODEL 8930574 protein-coding LOC102012115 retinal dehydrogenase 1-like NW_004955512 5973700 6028923 - 102012115 AGCD01066790;AGCD01066791;AGCD01066792;AGCD01066793;AGCD01066794;AGCD01066795;AGCD01066796;AGCD01066797;AGCD01066798;AGCD01066799;AGCD01066800;AGCD01066801;GBCQ01010585;GBDK01002218;XM_013506549 XP_013362003 MODEL 39132482 snrna U6 U6 spliceosomal RNA 10357859 ncrna LOC106146848 uncharacterized LOC106146848 NW_004955498 5275975 5280792 - 106146848 AGCD01063065;GBDK01259342;XR_001231450 MODEL 8982520 protein-coding Ephb3 EPH receptor B3 ENCODES a protein that exhibits axon guidance receptor activity (ortholog); ephrin receptor activity (ortholog); INVOLVED IN angiogenesis (ortholog); axon guidance (ortholog); axonal fasciculation (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Currarino syndrome (ortholog); malaria (ortholog); FOUND IN plasma membrane (ortholog) NW_004955420 22900588 22919924 - 102016275 AGCD01021213;AGCD01021214;GBDI01185928;GBDJ01230601;XM_013513587 XP_013369041 MODEL 8971978 protein-coding LOC102022449 zinc finger protein 709-like NW_004955626 47966 58915 + 102022449 AGCD01077462;AGCD01077463;GBDF01184976;XM_013510163 XP_013365617 MODEL 8900963 protein-coding Tac3 tachykinin precursor 3 ENCODES a protein that exhibits neuromedin K receptor binding (ortholog); substance K receptor binding (ortholog); INVOLVED IN positive regulation of blood pressure (ortholog); positive regulation of flagellated sperm motility (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); FOUND IN extracellular space (ortholog) NW_004955458 4765153 4771122 - 102018806 AGCD01047440;GBDF01226093;XM_005397338;XM_013520998 XP_005397395;XP_013376452 MODEL 8914094 protein-coding Sirt5 sirtuin 5 ENCODES a protein that exhibits NAD+ binding (ortholog); protein-glutaryllysine deglutarylase activity (ortholog); protein-malonyllysine demalonylase activity (ortholog); INVOLVED IN negative regulation of cardiac muscle cell apoptotic process (ortholog); negative regulation of reactive oxygen species metabolic process (ortholog); peptidyl-lysine demalonylation (ortholog); PARTICIPATES IN histone modification pathway; Sirtuin mediated pathway; FOUND IN cytosol (ortholog); mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog) NW_004955465 1129217 1167604 - 102011419 AGCD01050331;AGCD01050332;AGCD01050333;AGCD01050334;AGCD01050335;AGCD01050336;GBDJ01185808;XM_005398799 XP_005398856 MODEL 8959850 protein-coding LOC102009041 natural cytotoxicity triggering receptor 3 ligand 1-like NW_004955414 32155049 32171552 + 102009041 AGCD01015774;AGCD01015775;AGCD01015776;GBDF01277682;XM_005380380;XM_005380381;XM_013512029 XP_005380437;XP_005380438;XP_013367483 MODEL 39132483 snrna U6 U6 spliceosomal RNA 8846681 protein-coding Znf280d zinc finger protein 280D ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955450 17596940 17681746 + 102023418 AGCD01042881;AGCD01042882;AGCD01042883;GBBH01214169;XM_005393863;XM_013518972;XM_013518973 XP_005393920;XP_013374426;XP_013374427 MODEL 8886462 protein-coding Tmem92 transmembrane protein 92 ASSOCIATED WITH Developmental Disabilities (ortholog); hereditary breast ovarian cancer syndrome (ortholog); osteogenesis imperfecta type 1 (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955451 11402598 11407002 - 102011724 AGCD01043354;GBDK01195399;XM_013519099;XM_013519100;XM_013519101;XM_013519102 XP_013374553;XP_013374554;XP_013374555;XP_013374556 MODEL 10096438 ncrna LOC106149122 uncharacterized LOC106149122 NW_004955437 14550326 14551335 - 106149122 AGCD01034678;GBBH01043883;XR_001235083 MODEL 8703103 protein-coding Htr7 5-hydroxytryptamine receptor 7 ENCODES a protein that exhibits G protein-coupled serotonin receptor activity (ortholog); neurotransmitter receptor activity (ortholog); serotonin receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating serotonin receptor signaling pathway (ortholog); behavioral response to pain (ortholog); detection of mechanical stimulus involved in sensory perception of pain (ortholog); PARTICIPATES IN serotonin signaling pathway via receptors engaging G alphas protein family; ASSOCIATED WITH alcohol use disorder (ortholog); amnestic disorder (ortholog); anxiety disorder (ortholog); FOUND IN axon terminus (ortholog); cilium (ortholog); dendrite (ortholog) NW_004955425 2321420 2420420 + 102012876 AGCD01025258;AGCD01025259;AGCD01025260;AGCD01025261;AGCD01025262;AGCD01025263;GBDF01050691;GBDF01050693;XM_005385841;XM_005385842;XM_005385844 XP_005385898;XP_005385899;XP_005385901 MODEL 8883071 protein-coding Dennd6a DENN domain containing 6A ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN positive regulation of cell-cell adhesion mediated by cadherin (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Pyruvate Dehydrogenase E1-Beta Deficiency (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); recycling endosome (ortholog) NW_004955430 7327602 7396961 - 102015751 AGCD01029348;AGCD01029349;GBDJ01008907;XM_005387413;XM_013515601;XM_013515602;XM_013515603 XP_005387470;XP_013371055;XP_013371056;XP_013371057 MODEL 8716362 protein-coding Tac4 tachykinin precursor 4 ENCODES a protein that exhibits receptor ligand activity (ortholog); signaling receptor binding (ortholog); substance K receptor binding (ortholog); INVOLVED IN detection of temperature stimulus involved in sensory perception of pain (ortholog); negative regulation of sensory perception of pain (ortholog); negative regulation of systemic arterial blood pressure (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN extracellular space (ortholog) NW_004955451 11755645 11763281 + 102018879 AGCD01043364;GBBH01091448;XM_005394188 XP_005394245 MODEL 8952658 protein-coding Phactr3 phosphatase and actin regulator 3 ENCODES a protein that exhibits actin binding (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955528 3894294 4041621 - 102008253 AGCD01069613;AGCD01069614;AGCD01069615;AGCD01069616;GBDJ01097569;XM_005410046 XP_005410103 MODEL 9045347 protein-coding Rfx8 regulatory factor X8 NW_004955470 7128811 7191466 - 102017765 AGCD01052792;AGCD01052793;AGCD01052794;GBDF01085190;XM_005400761 XP_005400818 MODEL 39132484 snrna U6 U6 spliceosomal RNA 8793559 ncrna LOC102023538 uncharacterized LOC102023538 NW_004955445 7472747 7495768 - 102023538 AGCD01039542;GBDF01187742;XR_001235576;XR_001235577;XR_001235578;XR_001235579;XR_262308 MODEL 9035323 protein-coding Sirt6 sirtuin 6 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); damaged DNA binding (ortholog); INVOLVED IN base-excision repair (ortholog); cardiac muscle cell differentiation (ortholog); cellular response to angiotensin (ortholog); PARTICIPATES IN histone modification pathway; Sirtuin mediated pathway; ASSOCIATED WITH amenorrhea (ortholog); Cardiomegaly (ortholog); Cardiotoxicity (ortholog); FOUND IN chromatin (ortholog); chromosome, subtelomeric region (ortholog); endoplasmic reticulum (ortholog) NW_004955495 4641883 4650518 + 102011999 AGCD01061938;GBDI01262314;XM_013505251;XM_013505252 XP_013360705;XP_013360706 MODEL 8884753 protein-coding S100a4 S100 calcium binding protein A4 ENCODES a protein that exhibits actin binding (ortholog); calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Colonic Neoplasms (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytosol (ortholog); extracellular space (ortholog); nucleoplasm (ortholog) NW_004955545 192236 194468 - 102012128 AGCD01071776;GBCE01002936;XM_005411410 XP_005411467 MODEL 8871258 protein-coding Scn2a sodium voltage-gated channel alpha subunit 2 ENCODES a protein that exhibits calmodulin binding (ortholog); leucine zipper domain binding (ortholog); voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (ortholog); INVOLVED IN axon development (ortholog); cellular response to hypoxia (ortholog); cerebral cortex development (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); autism spectrum disorder (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); glutamatergic synapse (ortholog) NW_004955449 8722043 8846165 - 102012382 AGCD01042020;AGCD01042021;AGCD01042022;AGCD01042023;AGCD01042024;AGCD01042025;AGCD01042026;GBBH01055930;XM_005393295;XM_005393296;XM_005393297;XM_005393298 XP_005393352;XP_005393353;XP_005393354;XP_005393355 MODEL 8932056 ncrna LOC102019350 uncharacterized LOC102019350 NW_004955452 1066239 1067076 + 102019350 AGCD01043830;GBDF01124799;XR_262632 MODEL 8972862 protein-coding Slc35e1 solute carrier family 35 member E1 FOUND IN Golgi apparatus (ortholog) NW_004955524 1204227 1212833 + 102027333 AGCD01068739;GBCE01118450;GBDK01092588;XM_005409500 XP_005409557 MODEL 8915234 trna Trnas-gcu transfer RNA serine (anticodon GCU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978842 AGCD01012398;AGCD01016984;AGCD01022970;AGCD01050591;AGCD01050613;AGCD01050626;AGCD01051471;AGCD01057630;AGCD01063790 MODEL 9031766 protein-coding LOC102009791 uncharacterized LOC102009791 NW_004955648 46741 47626 - 102009791 AGCD01077769;GBDF01075664;XM_005415051 XP_005415108 MODEL 8944457 pseudo LOC102003871 transcription and mRNA export factor ENY2 pseudogene NW_004955418 2196164 2198005 - 102003871 AGCD01018751;XM_005382119 MODEL 8853797 protein-coding Sgf29 SAGA complex associated factor 29 ENCODES a protein that exhibits histone H3K36me3 reader activity (ortholog); histone H3K4me3 reader activity (ortholog); methylation-dependent protein binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of cell cycle (ortholog); regulation of cell division (ortholog); PARTICIPATES IN histone modification pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Brody myopathy (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN ATAC complex (ortholog); SAGA-type complex (ortholog) NW_004955493 6759426 6774796 + 102018505 AGCD01061137;GBCB01041570;XM_005405175;XM_005405176;XM_005405177 XP_005405232;XP_005405233;XP_005405234 MODEL 8982833 protein-coding Ppox protoporphyrinogen oxidase ENCODES a protein that exhibits oxygen-dependent protoporphyrinogen oxidase activity (ortholog); INVOLVED IN heme A biosynthetic process (ortholog); heme B biosynthetic process (ortholog); heme biosynthetic process (ortholog); PARTICIPATES IN acute intermittent porphyria pathway; erythropoietic porphyria pathway; heme biosynthetic pathway; ASSOCIATED WITH acute intermittent porphyria (ortholog); autoimmune interstitial lung, joint, and kidney disease (ortholog); Colorectal Neoplasms (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial membrane (ortholog) NW_004955468 12930387 12934437 + 102004053 AGCD01052192;AGCD01052193;GBDF01155905;XM_005400257;XM_013522352 XP_005400314;XP_013377806 MODEL 8859739 ncrna LOC102023908 uncharacterized LOC102023908 NW_004955416 31588348 31600034 + 102023908 AGCD01017765;GBDF01126921;XR_260445;XR_260446;XR_260447 MODEL 9027538 protein-coding Rbm34 RNA binding motif protein 34 ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); common variable immunodeficiency 14 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955492 4732249 4754433 + 102023609 AGCD01060728;AGCD01060729;GBBH01193549;GBDK01239466;XM_005405017 XP_005405074 MODEL 8721452 ncrna LOC102022450 uncharacterized LOC102022450 NW_004955403 48110321 48128265 - 102022450 AGCD01002914;GBDK01024559;XR_001234474;XR_259248 MODEL 8892866 protein-coding Telo2 telomere maintenance 2 ENCODES a protein that exhibits Hsp90 protein binding (ortholog); molecular adaptor activity (ortholog); protein kinase binding (ortholog); INVOLVED IN protein stabilization (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955442 15719082 15733527 - 102003812 AGCD01037878;GBDK01280932;XM_005391562;XM_005391563;XM_013517675;XR_001235360 XP_005391619;XP_005391620;XP_013373129 MODEL 8845544 protein-coding Krt4 keratin 4 INVOLVED IN cytoskeleton organization (ortholog); epithelial cell differentiation (ortholog); negative regulation of epithelial cell proliferation (ortholog); ASSOCIATED WITH contact dermatitis (ortholog); genetic disease (ortholog); Genetic Skin Diseases (ortholog); FOUND IN cell surface (ortholog); intermediate filament cytoskeleton (ortholog); keratin filament (ortholog) NW_004955458 108803 115755 - 102007973 AGCD01047106;GBDI01010821;XM_005397129 XP_005397186 MODEL 8886398 pseudo LOC102009045 60S ribosomal protein L12-like NW_004955475 11058006 11058745 + 102009045 AGCD01055139 MODEL 10118794 ncrna LOC106149123 uncharacterized LOC106149123 NW_004955404 2358325 2359905 + 106149123 AGCD01003255;GBDF01015766;XR_001235085 MODEL 39133692 misc_rna Telomerase-vert Vertebrate telomerase RNA 10193911 ncrna LOC106149959 uncharacterized LOC106149959 NW_004955458 5329029 5330856 - 106149959 AGCD01047476;GBDI01105749;XR_001236453 MODEL 8972276 protein-coding Htra1 HtrA serine peptidase 1 ENCODES a protein that exhibits identical protein binding (ortholog); molecular function activator activity (ortholog); serine-type peptidase activity (ortholog); INVOLVED IN chorionic trophoblast cell differentiation (ortholog); dentinogenesis (ortholog); negative regulation of BMP signaling pathway (ortholog); ASSOCIATED WITH 2-Methylbutyryl-CoA Dehydrogenase Deficiency (ortholog); age related macular degeneration (ortholog); age related macular degeneration 7 (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); plasma membrane (ortholog) NW_004955477 761127 808396 + 102009942 AGCD01055495;GBBH01032145;XM_013503081 XP_013358535 MODEL 9059092 protein-coding Rbm38 RNA binding motif protein 38 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955445 2036314 2050882 - 102004430 AGCD01039348;GBBH01032146;GBDF01047365;XM_005392253 XP_005392310 MODEL 9053924 protein-coding Tmem94 transmembrane protein 94 ENCODES a protein that exhibits P-type magnesium transporter activity (ortholog); INVOLVED IN embryonic brain development (ortholog); embryonic heart tube development (ortholog); intracellular magnesium ion homeostasis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Intellectual Developmental Disorder with Cardiac Defects and Dysmorphic Facies (ortholog); Nervous System Malformations (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955553 2305425 2353596 + 102028585 AGCD01072935;GBDI01071197;XM_005412301;XM_005412302;XM_005412303;XM_005412305;XM_005412306;XM_005412307;XM_013508621;XM_013508622;XM_013508623;XM_013508624;XM_013508625 XP_005412358;XP_005412359;XP_005412360;XP_005412362;XP_005412363;XP_005412364;XP_013364075;XP_013364076;XP_013364077;XP_013364078;XP_013364079 MODEL 8818651 protein-coding Prrg2 proline rich and Gla domain 2 ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955559 1279601 1287182 - 102012254 AGCD01073639;GBDK01142745;XM_005412865;XM_013508986;XM_013508987;XM_013508988 XP_005412922;XP_013364440;XP_013364441;XP_013364442 MODEL 39132486 snrna U6 U6 spliceosomal RNA 8749074 pseudo LOC102015127 fatty acid-binding protein, epidermal pseudogene NW_004955424 1009254 1019318 + 102015127 AGCD01024227 MODEL 39133690 misc_rna Telomerase-vert Vertebrate telomerase RNA 8982356 protein-coding Rfxank regulatory factor X associated ankyrin containing protein ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); histone deacetylase binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); Ras protein signal transduction (ortholog); ASSOCIATED WITH genetic disease (ortholog); Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); MHC class II deficiency (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intercellular bridge (ortholog) NW_004955524 2635358 2642206 - 102009536 AGCD01068827;GBDK01070389;XM_005409620;XM_005409621;XM_013507211;XM_013507212;XM_013507214 XP_005409677;XP_005409678;XP_013362665;XP_013362666;XP_013362668 MODEL 10136571 ncrna LOC106149960 uncharacterized LOC106149960 NW_004955458 5327632 5328448 - 106149960 AGCD01047476;GBDK01044031;XR_001236454;XR_001236455 MODEL 9023658 protein-coding Tmem95 transmembrane protein 95 INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN acrosomal membrane (ortholog) NW_004955467 9562723 9564818 - 102018275 AGCD01051518;GBDF01119713;XM_005399509 XP_005399566 MODEL 8906653 protein-coding Sp5 Sp5 transcription factor ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); post-anal tail morphogenesis (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); split hand-foot malformation 5 (ortholog) NW_004955449 4076872 4079887 - 102023758 AGCD01041874;GBDJ01193009;XM_005393244 XP_005393301 MODEL 8824129 pseudo LOC102013349 small nuclear ribonucleoprotein E pseudogene NW_004955442 15952452 15954108 + 102013349 AGCD01037888;AGCD01037889 MODEL 8751362 ncrna LOC102022841 uncharacterized LOC102022841 NW_004955513 3130866 3138160 - 102022841 AGCD01066895;XR_001231741;XR_264467 MODEL 15036854 trna Trnas-gga transfer RNA serine (anticodon GGA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978803 8793311 protein-coding LOC102017758 apolipoprotein L3-like NW_004955413 22826454 22837555 - 102017758 AGCD01014317;GBBH01091386;XM_005379156 XP_005379213 MODEL 9015400 ncrna LOC102021133 uncharacterized LOC102021133 NW_004955488 1440083 1474050 + 102021133 AGCD01059498;GBDF01041490;XR_263995 MODEL 8854610 protein-coding Bean1 brain expressed associated with NEDD4 1 ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); cataract 5 multiple types (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog) NW_004955433 23017335 23059054 + 102015559 AGCD01031952;GBCE01163374;XM_005388509 XP_005388566 MODEL 8815556 protein-coding LOC102003872 olfactory receptor 1A1-like NW_004955481 248188 249135 + 102003872 AGCD01056784;XM_005402915 XP_005402972 MODEL 9040149 protein-coding Znf281 zinc finger protein 281 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN embryonic body morphogenesis (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955406 36592771 36599543 - 102003618 AGCD01006559;GBCQ01033692;XM_013522000;XM_013522003 XP_013377454;XP_013377457 MODEL 39133057 snrna U6 U6 spliceosomal RNA 8839711 protein-coding LOC102007165 arylacetamide deacetylase-like NW_004955448 3194027 3221003 - 102007165 AGCD01041312;AGCD01041313;GBCC01001426;XM_005393039 XP_005393096 MODEL 8853140 pseudo LOC102024878 protein phosphatase Slingshot homolog 1 pseudogene NW_004955457 4799448 4801105 - 102024878 AGCD01046796 MODEL 8843675 protein-coding Wnt7a Wnt family member 7A ENCODES a protein that exhibits cytokine activity (ortholog); frizzled binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN angiogenesis (ortholog); apoptotic process (ortholog); asymmetric protein localization involved in cell fate determination (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; Wnt signaling, non-canonical pathway; ASSOCIATED WITH 3p deletion syndrome (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog); glutamatergic synapse (ortholog) NW_004955429 12647993 12693998 + 102004623 AGCD01028728;GBDJ01171100;XM_005386976 XP_005387033 MODEL 8901865 protein-coding Plekhh1 pleckstrin homology, MyTH4 and FERM domain containing H1 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Leber congenital amaurosis 13 (ortholog) NW_004955466 2616627 2653804 - 102014029 AGCD01050750;AGCD01050751;GBDJ01316571;XM_013521892 XP_013377346 MODEL 8911633 protein-coding Kiz kizuna centrosomal protein ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN spindle organization (ortholog); ASSOCIATED WITH familial hyperinsulinemic hypoglycemia 1 (ortholog); fundus dystrophy (ortholog); retinitis pigmentosa (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog) NW_004955415 28991766 29078796 + 102022811 AGCD01016647;GBDF01002805;XM_005380949;XM_005380950;XM_013512366 XP_005381006;XP_005381007;XP_013367820 MODEL 8717564 protein-coding Sirt7 sirtuin 7 ENCODES a protein that exhibits chromatin binding (ortholog); histone H3K18 deacetylase activity, NAD-dependent (ortholog); NAD-dependent protein lysine deacetylase activity (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair-dependent chromatin remodeling (ortholog); homologous chromosome pairing at meiosis (ortholog); PARTICIPATES IN histone modification pathway; RNA polymerase I transcription pathway; Sirtuin mediated pathway; ASSOCIATED WITH Reperfusion Injury (ortholog); steatotic liver disease (ortholog); systemic scleroderma (ortholog); FOUND IN chromatin (ortholog); nuclear speck (ortholog); nucleolus (ortholog) NW_004955506 1252271 1258728 + 102021374 AGCD01065252;GBDF01192905;XM_005407236;XM_005407237;XM_005407238;XM_005407239;XM_005407240;XM_013506059;XM_013506060 XP_005407293;XP_005407294;XP_005407295;XP_005407296;XP_005407297;XP_013361513;XP_013361514 MODEL 8715082 protein-coding Znf282 zinc finger protein 282 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog) NW_004955491 4457963 4480732 + 102027864 AGCD01060435;AGCD01060436;AGCD01060437;AGCD01060438;AGCD01060439;GBCE01095666;GBDK01022328;XM_013504590 XP_013360044 MODEL 8868620 protein-coding LOC102007476 putative methyl-CpG-binding domain protein 3-like 5 NW_004955563 661965 676066 + 102007476 AGCD01074073;AGCD01074074;AGCD01074075;GBDF01166412;XM_005413108 XP_005413165 MODEL 8798789 ncrna LOC102019352 uncharacterized LOC102019352 NW_004955405 18424487 18429122 - 102019352 AGCD01005017;GBDJ01223618;XR_259387 MODEL 8742292 protein-coding Vash2 vasohibin 2 ENCODES a protein that exhibits actin binding (ortholog); metallocarboxypeptidase activity (ortholog); microtubule binding (ortholog); INVOLVED IN axon development (ortholog); cell-cell fusion (ortholog); labyrinthine layer blood vessel development (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955406 4607924 4639949 - 102016884 AGCD01005699;GBDI01357575;XM_005374734 XP_005374791 MODEL 39133691 misc_rna Telomerase-vert Vertebrate telomerase RNA 8984404 protein-coding Wnt7b Wnt family member 7B ENCODES a protein that exhibits chemoattractant activity involved in axon guidance (ortholog); frizzled binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN anatomical structure regression (ortholog); angiogenesis (ortholog); apoptotic process involved in blood vessel morphogenesis (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH breast cancer (ortholog); breast fibroadenoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cell surface (ortholog); extracellular space (ortholog) NW_004955413 30146185 30185693 - 102005922 AGCD01014601;AGCD01014602;GBBH01026258;GBCE01031612;XM_013511611;XM_013511613 XP_013367065;XP_013367067 MODEL 10066165 protein-coding Znf283 zinc finger protein 283 ASSOCIATED WITH ethylmalonic encephalopathy (ortholog); schizophrenia (ortholog) NW_004955555 1564829 1567836 + 106147410 AGCD01073090;XM_013508743 XP_013364197 MODEL 8819082 protein-coding LOC102024511 disintegrin and metalloproteinase domain-containing protein 20 NW_004955552 2217959 2237548 - 102024511 AGCD01072806;GBDF01081593;XM_005412207;XM_005412208;XM_005412209 XP_005412264;XP_005412265;XP_005412266 MODEL 39133546 snrna U4 U4 spliceosomal RNA 8856184 protein-coding Kl klotho ENCODES a protein that exhibits fibroblast growth factor binding (ortholog); fibroblast growth factor receptor binding (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); determination of adult lifespan (ortholog); energy reserve metabolic process (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); amenorrhea (ortholog); Animal Disease Models (ortholog) NW_004955431 12782913 12833215 - 102015879 AGCD01030271;AGCD01030272;GBCQ01000622;XM_013515718 XP_013371172 MODEL 8787737 ncrna LOC102008635 uncharacterized LOC102008635 NW_004955493 5964146 5970478 + 102008635 AGCD01061081;GBBH01168010;XR_264086 MODEL 8763667 protein-coding Sp6 Sp6 transcription factor INVOLVED IN epithelial to mesenchymal transition (ortholog); odontogenesis (ortholog); regulation of odontogenesis (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 1K (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955451 13264537 13270104 + 102013239 AGCD01043463;AGCD01043464;GBDF01261731;XM_005394262 XP_005394319 MODEL 9067374 pseudo LOC102007478 ferritin light chain pseudogene NW_004955566 8758 10353 - 102007478 AGCD01074343;XM_005413274 MODEL 8848103 protein-coding Ten1 TEN1 subunit of CST complex ENCODES a protein that exhibits telomeric DNA binding (ortholog); INVOLVED IN negative regulation of telomere maintenance via telomerase (ortholog); ASSOCIATED WITH peroxisomal acyl-CoA oxidase deficiency (ortholog); FOUND IN chromosome, telomeric region (ortholog); CST complex (ortholog); nucleoplasm (ortholog) NW_004955506 6252146 6286675 - 102008441 AGCD01065405;AGCD01065406;AGCD01065407;AGCD01065408;AGCD01065409;AGCD01065410;AGCD01065411;GBDF01011329;XM_013505995 XP_013361449 MODEL 8982355 protein-coding LOC102009047 protein FAM122A-like NW_004955415 23111023 23111850 + 102009047 AGCD01016551;XM_013512167 XP_013367621 MODEL 8736249 protein-coding Neb nebulin ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); arthrogryposis multiplex congenita-6 (ortholog); congenital muscular dystrophy (ortholog); FOUND IN contractile muscle fiber (ortholog); myofibril (ortholog); protein-containing complex (ortholog) NW_004955440 17060303 17259558 - 102005512 AGCD01036558;AGCD01036559;AGCD01036560;AGCD01036561;AGCD01036562;AGCD01036563;GBDF01053409;XM_013517490 XP_013372944 MODEL 9001847 protein-coding Znf285 zinc finger protein 285 ASSOCIATED WITH ethylmalonic encephalopathy (ortholog) NW_004955555 1708600 1714425 - 102019649 AGCD01073097;XM_013508673 XP_013364127 MODEL 8759353 pseudo LOC102024514 small nuclear ribonucleoprotein Sm D2 pseudogene NW_004955560 616311 619707 + 102024514 AGCD01073733;XM_005412991 MODEL 8829235 pseudo LOC102024883 hyccin pseudogene NW_004955464 5326079 5330731 + 102024883 AGCD01050004 MODEL 8888053 protein-coding S100a5 S100 calcium binding protein A5 ENCODES a protein that exhibits calcium ion binding (ortholog); copper ion binding (ortholog); protein homodimerization activity (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN neuronal cell body (ortholog); nucleus (ortholog) NW_004955545 187159 190399 - 102011149 AGCD01071776;GBBH01139402;XM_005411406;XM_005411407;XM_005411408;XM_005411409 XP_005411463;XP_005411464;XP_005411465;XP_005411466 MODEL 8735729 pseudo LOC102009049 vascular endothelial zinc finger 1 pseudogene NW_004955476 8879444 8880316 - 102009049 AGCD01055375 MODEL 8771683 protein-coding Rbm39 RNA binding motif protein 39 ENCODES a protein that exhibits RS domain binding (ortholog); INVOLVED IN regulation of mRNA splicing, via spliceosome (ortholog); FOUND IN centriolar satellite (ortholog); microtubule cytoskeleton (ortholog); nuclear speck (ortholog) NW_004955422 25719771 25755757 + 102005389 AGCD01023264;AGCD01023265;AGCD01023266;GBBH01034224;XM_005384769;XM_005384770;XM_005384771;XM_005384772 XP_005384826;XP_005384827;XP_005384828;XP_005384829 MODEL 8901930 pseudo LOC102015128 serologically defined colon cancer antigen 3 homolog pseudogene NW_004955425 3353423 3354425 + 102015128 AGCD01025288 MODEL 10195718 ncrna LOC106149961 uncharacterized LOC106149961 NW_004955458 518276 520439 - 106149961 AGCD01047131;GBDI01370925;XR_001236456 MODEL 8719493 pseudo LOC102019354 ankyrin repeat family A protein 2 pseudogene NW_004955452 7466022 7466911 - 102019354 AGCD01044161 MODEL 8892781 protein-coding Prrg3 proline rich and Gla domain 3 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955498 7217550 7227685 + 102008552 AGCD01063146;GBCE01183264;XM_005406442;XM_005406443 XP_005406499;XP_005406500 MODEL 8947779 pseudo LOC102022451 ubiquitin-conjugating enzyme E2 D3 pseudogene NW_004955451 15454957 15455313 - 102022451 AGCD01043609 MODEL 8823398 protein-coding LOC102015135 olfactory receptor 8K3-like NW_004955511 1157886 1158833 + 102015135 AGCD01066358;XM_005408224 XP_005408281 MODEL 8768672 ncrna LOC102021134 uncharacterized LOC102021134 NW_004955421 22030147 22041896 - 102021134 AGCD01022127;GBDF01234681;XR_001233868;XR_260806 MODEL 8881084 pseudo LOC102003873 40S ribosomal protein S18 pseudogene NW_004955418 24453774 24454252 - 102003873 AGCD01019333 MODEL 8751269 protein-coding Rbm41 RNA binding motif protein 41 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Charcot-Marie-Tooth disease type X (ortholog) NW_004955490 8912616 8974748 + 102021135 AGCD01060298;GBBH01107168;XM_005404705;XM_005404706 XP_005404762;XP_005404763 MODEL 8875978 protein-coding Krt40 keratin 40 NW_004955451 15401606 15406390 - 102022995 AGCD01043606;XM_005394618 XP_005394675 MODEL 8896656 ncrna LOC102019357 uncharacterized LOC102019357 NW_004955454 7197852 7234878 - 102019357 AGCD01045286;AGCD01045287;AGCD01045288;AGCD01045289;AGCD01045290;GBDF01123367;XR_001236239;XR_001236240;XR_001236241;XR_262780 MODEL 8903392 protein-coding LOC102008637 C-type lectin domain family 2 member L NW_004955494 3562862 3573552 - 102008637 AGCD01061476;AGCD01061477;GBCE01072603;GBCQ01101254;XM_013504909 XP_013360363 MODEL 39132488 snrna U6 U6 spliceosomal RNA 8776962 protein-coding Scn2b sodium voltage-gated channel beta subunit 2 ENCODES a protein that exhibits sodium channel regulator activity (ortholog); voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN cardiac conduction (ortholog); cardiac muscle cell action potential involved in contraction (ortholog); cardiac muscle contraction (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); dilated cardiomyopathy (ortholog); FOUND IN axon initial segment (ortholog); node of Ranvier (ortholog); plasma membrane (ortholog) NW_004955412 19341008 19353563 - 102006439 AGCD01012950;GBCE01076512;XM_005378230;XM_013511243 XP_005378287;XP_013366697 MODEL 8970439 pseudo LOC102024515 ORM1-like protein 1 pseudogene NW_004955446 6139115 6140325 + 102024515 AGCD01040088 MODEL 8773472 protein-coding Sit1 signaling threshold regulating transmembrane adaptor 1 ENCODES a protein that exhibits kinase binding (ortholog); INVOLVED IN regulation of T cell activation (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955472 643923 645802 + 102010991 AGCD01053344;AGCD01053345;GBBH01063625;GBCE01055336;XM_005401179 XP_005401236 MODEL 8727317 protein-coding LOC102005703 double-strand break repair protein MRE11A-like NW_004955414 105311 171913 + 102005703 AGCD01014702;AGCD01014703;AGCD01014704;AGCD01014705;AGCD01014706;GBCE01032230;GBDF01042621;XM_013512034 XP_013367488 MODEL 9060172 protein-coding LOC102013350 kallikrein-4-like NW_004955559 2994 9200 + 102013350 AGCD01073532;XM_013508937 XP_013364391 MODEL 39131357 protein-coding S100A9 S100 calcium binding protein A9 9049507 trna Trnas-uga transfer RNA serine (anticodon UGA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955483;NW_004955425;NW_004955465 756793;20176554;13268508 756874;20176635;13268589 +;+;+ 101978804 AGCD01025718;AGCD01050595;AGCD01057629 MODEL 8933212 protein-coding Vasn vasorin ENCODES a protein that exhibits transforming growth factor beta binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular response to redox state (ortholog); negative regulation of epithelial to mesenchymal transition (ortholog); ASSOCIATED WITH epilepsy (ortholog); hepatocellular carcinoma (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN cell surface (ortholog); extracellular exosome (ortholog); extracellular space (ortholog) NW_004955442 13060923 13071303 - 102011481 AGCD01037757;GBCE01054527;XM_005391295 XP_005391352 MODEL 8972506 protein-coding Phactr4 phosphatase and actin regulator 4 ENCODES a protein that exhibits actin binding (ortholog); protein phosphatase 1 binding (ortholog); protein phosphatase activator activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); closure of optic fissure (ortholog); enteric nervous system development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN lamellipodium (ortholog) NW_004955452 7505647 7593302 + 102015916 AGCD01044166;AGCD01044167;AGCD01044168;AGCD01044169;AGCD01044170;AGCD01044171;AGCD01044172;AGCD01044173;AGCD01044174;GBBH01106810;XM_005394951;XM_005394953;XM_005394954;XM_013519485;XM_013519486;XM_013519487;XM_013519488 XP_005395008;XP_005395010;XP_005395011;XP_013374939;XP_013374940;XP_013374941;XP_013374942 MODEL 8927430 protein-coding Scn3a sodium voltage-gated channel alpha subunit 3 ENCODES a protein that exhibits calmodulin binding (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN behavioral response to pain (ortholog); cellular response to antibiotic (ortholog); membrane depolarization during action potential (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); benign familial infantile seizures 3 (ortholog); FOUND IN axon (ortholog); membrane (ortholog); neuronal cell body (ortholog) NW_004955449 8896454 9009304 + 102013357 AGCD01042030;AGCD01042031;XM_005393300;XM_005393301;XM_013518814 XP_005393357;XP_005393358;XP_013374268 MODEL 8868588 pseudo LOC102005705 selenoprotein T pseudogene NW_004955474 8104963 8107680 + 102005705 AGCD01054542 MODEL 8959937 ncrna LOC102012121 uncharacterized LOC102012121 NW_004955435 13285870 13323570 + 102012121 AGCD01033200;GBDF01292749;XR_001234893;XR_001234894;XR_261685 MODEL 8906087 protein-coding Prrg4 proline rich and Gla domain 4 ENCODES a protein that exhibits WW domain binding (ortholog); ASSOCIATED WITH cholangiocarcinoma (ortholog); intellectual disability (ortholog); FOUND IN plasma membrane (ortholog) NW_004955422 13305422 13327188 - 102026876 AGCD01022820;AGCD01022821;GBBH01077083;GBDK01181646;XM_013514331 XP_013369785 MODEL 10317837 protein-coding LOC106150334 uncharacterized LOC106150334 NW_004955472 909845 924601 - 106150334 AGCD01053365;GBDI01187571;XM_013522968 XP_013378422 MODEL 8971519 pseudo LOC102006050 nicotinamide phosphoribosyltransferase-like NW_004955426 5308768 5326304 - 102006050 AGCD01026121 MODEL 8872080 protein-coding LOC102007481 UDP-glucuronosyltransferase 2A3-like NW_004955447 3273792 3279756 + 102007481 AGCD01040590;GBDF01017429;GBDF01017432;XM_013518565 XP_013374019 MODEL 9005667 pseudo LOC102018113 periphilin-1 pseudogene NW_004955503 1977626 1979433 + 102018113 AGCD01064593;XM_005406925 MODEL 8739337 ncrna LOC102005707 uncharacterized LOC102005707 NW_004955478 5365809 5429517 + 102005707 AGCD01055871;AGCD01055872;GBDF01254563;XR_001230866;XR_263698 MODEL 8996812 ncrna LOC102024886 uncharacterized LOC102024886 NW_004955413 990745 991254 - 102024886 AGCD01013502;XR_260046 MODEL 9035274 protein-coding Krt5 keratin 5 ENCODES a protein that exhibits scaffold protein binding (ortholog); INVOLVED IN intermediate filament polymerization (ortholog); regulation of cell migration (ortholog); regulation of protein localization (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Animal Mammary Neoplasms (ortholog); autosomal dominant dystrophic epidermolysis bullosa (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); intermediate filament (ortholog) NW_004955547 2926154 2931954 - 102010738 AGCD01072302;GBCE01076577;XM_005411945 XP_005412002 MODEL 8907752 protein-coding Phaf1 phagophore assembly factor 1 ENCODES a protein that exhibits glutamate receptor binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN Golgi to plasma membrane protein transport (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); cataract 5 multiple types (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN dendrite (ortholog); phagophore assembly site (ortholog); synaptic vesicle membrane (ortholog) NW_004955484 9466880 9491176 - 102016597 AGCD01058415;AGCD01058416;AGCD01058417;GBCB01038540;XM_005403701;XM_013503960 XP_005403758;XP_013359414 MODEL 9005988 protein-coding Lmntd1 lamin tail domain containing 1 INVOLVED IN cell population proliferation (ortholog); ASSOCIATED WITH Lung Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nuclear envelope (ortholog); nucleus (ortholog) NW_004955413 20508574 20771188 - 102030620 AGCD01014217;AGCD01014218;AGCD01014219;AGCD01014220;AGCD01014221;AGCD01014222;AGCD01014223;AGCD01014224;AGCD01014225;AGCD01014226;AGCD01014227;AGCD01014228;AGCD01014229;AGCD01014230;GBDF01210105;XM_005379102;XM_005379104;XM_005379105;XM_013511519;XM_013511520;XM_013511521 XP_005379159;XP_005379161;XP_005379162;XP_013366973;XP_013366974;XP_013366975 MODEL 8898563 ncrna LOC102023543 uncharacterized LOC102023543 NW_004955449 4046689 4060150 + 102023543 AGCD01041872;AGCD01041873;GBDF01253999;XR_262488 MODEL 39131343 protein-coding SIT1 signaling threshold regulating transmembrane adaptor 1 8842976 ncrna LOC102007168 uncharacterized LOC102007168 NW_004955592 171448 185769 + 102007168 AGCD01076300;AGCD01076301;GBDK01432229;XR_265130 MODEL 8905714 protein-coding Wnt8a Wnt family member 8A ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); cell morphogenesis (ortholog); endoderm development (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog) NW_004955418 2332636 2338099 - 102007429 AGCD01018762;XM_005382133 XP_005382190 MODEL 8835493 ncrna LOC102013351 uncharacterized LOC102013351 NW_004955444 12343789 12350586 + 102013351 AGCD01039069;GBCE01054272;XR_262262;XR_262263 MODEL 8974312 protein-coding Spata13 spermatogenesis associated 13 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN cell migration (ortholog); filopodium assembly (ortholog); lamellipodium assembly (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); filopodium (ortholog) NW_004955497 4224374 4307335 - 102019928 AGCD01062569;AGCD01062570;AGCD01062571;AGCD01062572;GBBH01026662;GBDJ01239817;XM_013505480 XP_013360934 MODEL 8844345 ncrna LOC102021139 uncharacterized LOC102021139 NW_004955422 24901333 24901841 - 102021139 AGCD01023238;GBDF01220853;XR_260909 MODEL 8792571 protein-coding Sp7 Sp7 transcription factor ENCODES a protein that exhibits DEAD/H-box RNA helicase binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cellular response to zinc ion starvation (ortholog); cementum mineralization (ortholog); diphosphate metabolic process (ortholog); ASSOCIATED WITH aortic valve stenosis (ortholog); osteogenesis imperfecta (ortholog); osteogenesis imperfecta type 12 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955458 583981 602856 - 102019671 AGCD01047137;AGCD01047138;AGCD01047139;AGCD01047140;GBBH01190592;XM_005397173;XM_005397174;XM_005397175;XM_013520954 XP_005397230;XP_005397231;XP_005397232;XP_013376408 MODEL 9022021 protein-coding Ephb4 EPH receptor B4 ENCODES a protein that exhibits ephrin receptor activity (ortholog); transmembrane receptor protein tyrosine kinase activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell adhesion (ortholog); cell migration involved in sprouting angiogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH arteriovenous malformation (ortholog); Breast Neoplasms (ortholog); cancer (ortholog); FOUND IN plasma membrane (ortholog) NW_004955573 132328 150879 + 102012701 AGCD01074964;GBDK01146486;XM_005413688;XM_013509481 XP_005413745;XP_013364935 MODEL 8860117 protein-coding Slc35e3 solute carrier family 35 member E3 NW_004955458 15216365 15231584 + 102011090 AGCD01047877;AGCD01047878;AGCD01047879;AGCD01047880;GBDF01225604;GBDK01319316;XM_013520900 XP_013376354 MODEL 9062927 protein-coding Unc13a unc-13 homolog A ENCODES a protein that exhibits calmodulin binding (ortholog); diacylglycerol binding (ortholog); identical protein binding (ortholog); INVOLVED IN amyloid-beta metabolic process (ortholog); dense core granule docking (ortholog); dense core granule priming (ortholog); PARTICIPATES IN insulin secretion pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); autistic disorder (ortholog); FOUND IN axon (ortholog); calyx of Held (ortholog); excitatory synapse (ortholog) NW_004955524 725353 769745 + 102011473 AGCD01068698;AGCD01068699;AGCD01068700;AGCD01068701;AGCD01068702;AGCD01068703;AGCD01068704;GBBH01124354;GBCE01149532;XM_013507235 XP_013362689 MODEL 8869360 protein-coding Prrt1 proline rich transmembrane protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); signaling receptor regulator activity (ortholog); INVOLVED IN learning or memory (ortholog); long-term synaptic depression (ortholog); long-term synaptic potentiation (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog); postsynaptic membrane (ortholog) NW_004955437 614026 615177 - 102006074 AGCD01034151;GBBH01219008;XM_013516938 XP_013372392 MODEL 8958250 pseudo LOC102022843 60S ribosomal protein L17 pseudogene NW_004955432 3221423 3223412 + 102022843 AGCD01030640 MODEL 8713977 protein-coding Tmem97 transmembrane protein 97 ENCODES a protein that exhibits oxysterol binding (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); positive regulation of lipoprotein transport (ortholog); positive regulation of wound healing (ortholog); FOUND IN endoplasmic reticulum (ortholog); lysosome (ortholog); nuclear membrane (ortholog) NW_004955481 4807850 4817006 - 102009178 AGCD01056953;GBDI01175765;XM_005402770 XP_005402827 MODEL 8965806 protein-coding Sp8 Sp8 transcription factor ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN dorsal/ventral pattern formation (ortholog); embryonic limb morphogenesis (ortholog); proximal/distal pattern formation (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955410 23401888 23404654 - 102004254 AGCD01011100;AGCD01011101;GBDF01128758;XM_013510495 XP_013365949 MODEL 8889115 protein-coding LOC102018114 T-cell receptor-associated transmembrane adapter 1 INVOLVED IN negative regulation of receptor recycling (ortholog); negative regulation of transport (ortholog); positive regulation of calcium-mediated signaling (ortholog); ASSOCIATED WITH megacolon (ortholog); FOUND IN centriolar satellite (ortholog); mitotic spindle (ortholog); plasma membrane (ortholog) NW_004955427 9665479 9700305 + 102018114 AGCD01027104;GBDI01087718;XM_005386363;XM_013515031;XM_013515032 XP_005386420;XP_013370485;XP_013370486 MODEL 8975797 protein-coding Dennd6b DENN domain containing 6B ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog) NW_004955413 33324081 33336518 - 102025995 AGCD01014663;GBBH01065557;GBCE01074576;XM_005379556 XP_005379613 MODEL 10228634 ncrna LOC106149124 uncharacterized LOC106149124 NW_004955437 11511942 11517994 - 106149124 AGCD01034574;GBDF01286151;XR_001235084 MODEL 9065069 protein-coding Ppm1j protein phosphatase, Mg2+/Mn2+ dependent 1J ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN protein dephosphorylation (ortholog); ASSOCIATED WITH amenorrhea (ortholog); hereditary spastic paraplegia 47 (ortholog) NW_004955435 16124087 16129296 - 102006493 AGCD01033295;GBDF01004408;XM_005388968 XP_005389025 MODEL 39133058 snrna U6 U6 spliceosomal RNA 10231708 ncrna LOC106146849 uncharacterized LOC106146849 NW_004955407 27881149 27949615 - 106146849 AGCD01007559;AGCD01007560;AGCD01007561;AGCD01007562;AGCD01007563;AGCD01007564;GBDF01045916;XR_001231451;XR_001231452 MODEL 8955361 pseudo LOC102018115 eukaryotic translation initiation factor 2 subunit 2 pseudogene NW_004955427 10286735 10287698 + 102018115 AGCD01027142 MODEL 8913678 ncrna LOC102023550 uncharacterized LOC102023550 NW_004955452 10816383 10890616 - 102023550 AGCD01044304;AGCD01044305;AGCD01044306;AGCD01044307;AGCD01044308;AGCD01044309;AGCD01044310;AGCD01044311;AGCD01044312;AGCD01044313;AGCD01044314;AGCD01044315;GBDF01047563;XR_001236053 MODEL 8709084 protein-coding S100a9 S100 calcium binding protein A9 INVOLVED IN actin cytoskeleton organization (ortholog); astrocyte development (ortholog); autocrine signaling (ortholog); ASSOCIATED WITH Acute Otitis Media; adult respiratory distress syndrome (ortholog); celiac disease (ortholog); FOUND IN calprotectin complex (ortholog); cornified envelope (ortholog); cytoplasm (ortholog) NW_004955592 90647 93842 - 102006189 AGCD01076300;GBCC01036093;XM_005414603;XM_013509984 XP_005414660;XP_013365438 MODEL 8868619 pseudo LOC102007169 N-acetylglucosamine-6-sulfatase pseudogene NW_004955402 44394601 44397598 - 102007169 AGCD01001113 MODEL 8884389 protein-coding Siva1 SIVA1 apoptosis inducing factor ENCODES a protein that exhibits CD27 receptor binding (ortholog); tumor necrosis factor receptor binding (ortholog); virus receptor activity (ortholog); INVOLVED IN activation-induced cell death of T cells (ortholog); extrinsic apoptotic signaling pathway (ortholog); intrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); Coxsackievirus Infections (ortholog); focal segmental glomerulosclerosis 5 (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955538 3197983 3202782 + 102027012 AGCD01071153;GBCB01000476;XM_005410841 XP_005410898 MODEL 8911504 pseudo LOC102019358 60S ribosomal protein L18a pseudogene NW_004955454 14060960 14061488 - 102019358 AGCD01045461 MODEL 9027625 ncrna LOC102003874 uncharacterized LOC102003874 NW_004955482 8396477 8398258 + 102003874 AGCD01057519;GBDF01127761;XR_263850 MODEL 9001126 ncrna LOC102023911 uncharacterized LOC102023911 NW_004955418 18816750 18823659 - 102023911 AGCD01019182;GBDF01196195;XR_001233491 MODEL 8769837 pseudo LOC102018117 GTPase RhebL1 pseudogene NW_004955428 18782844 18783372 + 102018117 AGCD01028071 MODEL 8919299 protein-coding Tacc1 transforming acidic coiled-coil containing protein 1 ENCODES a protein that exhibits nuclear estrogen receptor binding (ortholog); nuclear glucocorticoid receptor binding (ortholog); nuclear receptor binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cerebral cortex development (ortholog); interkinetic nuclear migration (ortholog); ASSOCIATED WITH epilepsy (ortholog); hereditary spastic paraplegia 54 (ortholog); hypogonadotropic hypogonadism 2 with or without anosmia (ortholog); FOUND IN cytosol (ortholog) NW_004955463 14314201 14409848 + 102025554 AGCD01049907;AGCD01049908;GBBH01076350;GBDK01232861;XM_013521504 XP_013376958 MODEL 8749548 protein-coding Spata16 spermatogenesis associated 16 INVOLVED IN spermatid development (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Fanconi-Bickel syndrome (ortholog); male infertility (ortholog); male infertility due to globozoospermia (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955420 2910780 3134177 - 102004712 AGCD01020609;AGCD01020610;AGCD01020611;AGCD01020612;AGCD01020613;GBDF01084320;XM_005383016 XP_005383073 MODEL 10072535 protein-coding LOC106149962 small nuclear ribonucleoprotein E-like NW_004955406 14676735 14677931 + 106149962 AGCD01005967;XM_013520922 XP_013376376 MODEL 8699839 protein-coding Six1 SIX homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN aorta morphogenesis (ortholog); branching involved in ureteric bud morphogenesis (ortholog); cellular response to 3,3',5-triiodo-L-thyronine (ortholog); ASSOCIATED WITH 22q11 Deletion Syndrome (ortholog); autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 23 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955466 8961597 8966069 + 102016994 AGCD01051010;AGCD01051011;GBDI01084435;XM_005399176 XP_005399233 MODEL 39133547 snrna U4 U4 spliceosomal RNA 8710766 protein-coding LOC102023912 uncharacterized LOC102023912 NW_004955482 5728073 5735532 - 102023912 AGCD01057346;GBDF01111631;XM_005403059;XR_001230978;XR_001230979 XP_005403116 MODEL 8906879 protein-coding Klb klotho beta ENCODES a protein that exhibits fibroblast growth factor binding (ortholog); fibroblast growth factor receptor binding (ortholog); INVOLVED IN fibroblast growth factor receptor signaling pathway (ortholog); positive regulation of cell population proliferation (ortholog); positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH amenorrhea (ortholog); Hyperglycinemia, Lactic Acidosis, and Seizures (ortholog); Martsolf syndrome 1 (ortholog) NW_004955443 7917047 7954390 - 102003702 AGCD01038301;AGCD01038302;AGCD01038303;AGCD01038304;GBDF01193281;GBDI01383332;XM_013518072 XP_013373526 MODEL 8794986 pseudo LOC102022846 60S ribosomal protein L9 pseudogene NW_004955433 23253679 23259191 + 102022846 AGCD01031956 MODEL 153211026 protein-coding ZNF286A zinc finger protein 286A 39133059 snrna U6 U6 spliceosomal RNA 8976471 protein-coding Ppm1k protein phosphatase, Mg2+/Mn2+ dependent 1K ENCODES a protein that exhibits manganese ion binding (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN branched-chain amino acid catabolic process (ortholog); regulation of mitochondrial membrane permeability involved in apoptotic process (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); congestive heart failure (ortholog); maple syrup urine disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955474 12229658 12250783 + 102024898 AGCD01054653;GBDI01006145;XM_013502772;XM_013502774 XP_013358226;XP_013358228 MODEL 8948812 protein-coding Tenm1 teneurin transmembrane protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN positive regulation of actin filament polymerization (ortholog); positive regulation of filopodium assembly (ortholog); positive regulation of MAP kinase activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); nucleus (ortholog) NW_004955473 9557822 10342007 + 102017229 AGCD01054075;AGCD01054076;AGCD01054077;AGCD01054078;AGCD01054079;AGCD01054080;AGCD01054081;AGCD01054082;AGCD01054083;AGCD01054084;AGCD01054085;AGCD01054086;AGCD01054087;AGCD01054088;AGCD01054089;AGCD01054090;AGCD01054091;AGCD01054092;AGCD01054093;GBCE01164533;XM_005401273 XP_005401330 MODEL 8905111 pseudo LOC102013356 coiled-coil domain-containing protein 152-like NW_004955402 14247257 14248568 + 102013356 AGCD01000422 MODEL 8970537 protein-coding Scn3b sodium voltage-gated channel beta subunit 3 ENCODES a protein that exhibits sodium channel regulator activity (ortholog); transmembrane transporter binding (ortholog); voltage-gated sodium channel activity involved in cardiac muscle cell action potential (ortholog); INVOLVED IN atrial cardiac muscle cell action potential (ortholog); cardiac conduction (ortholog); cardiac muscle cell action potential involved in contraction (ortholog); ASSOCIATED WITH brain edema (ortholog); Brugada syndrome (ortholog); Brugada syndrome 7 (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); plasma membrane (ortholog) NW_004955412 24391764 24412912 - 102025668 AGCD01013112;AGCD01013113;GBCB01027943;XM_005378393;XM_005378394;XM_005378395 XP_005378450;XP_005378451;XP_005378452 MODEL 8839223 protein-coding Ppp1ca protein phosphatase 1 catalytic subunit alpha ENCODES a protein that exhibits cadherin binding involved in cell-cell adhesion (ortholog); iron ion binding (ortholog); phosphatase activity (ortholog); INVOLVED IN branching morphogenesis of an epithelial tube (ortholog); circadian regulation of gene expression (ortholog); dephosphorylation (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; Bone morphogenetic proteins signaling pathway; dopamine signaling pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); congestive heart failure (ortholog); dilated cardiomyopathy (ortholog); FOUND IN adherens junction (ortholog); chromosome, telomeric region (ortholog); cytoplasm (ortholog) NW_004955422 18076670 18079859 + 102022506 AGCD01022936;GBDF01050912;XM_005384345 XP_005384402 MODEL 8928119 protein-coding LOC102021141 calcium-activated chloride channel regulator 4-like NW_004955423 7486534 7520539 - 102021141 AGCD01023603;GBDF01126331;XM_005385127 XP_005385184 MODEL 8972758 pseudo LOC102023553 G patch domain and KOW motifs-containing protein pseudogene NW_004955452 13842387 13843344 + 102023553 AGCD01044437 MODEL 10152510 ncrna LOC106150335 uncharacterized LOC106150335 NW_004955472 924677 932016 - 106150335 AGCD01053365;XR_001237081 MODEL 39133060 snrna U6 U6 spliceosomal RNA 8728037 protein-coding Ephb6 EPH receptor B6 INVOLVED IN activated T cell proliferation (ortholog); positive regulation of T cell costimulation (ortholog); T cell mediated immunity (ortholog); ASSOCIATED WITH Hereditary Pancreatitis (ortholog); malaria (ortholog); myoepithelioma (ortholog); FOUND IN cell surface (ortholog) NW_004955494 812482 820679 + 102003560 AGCD01061385;GBDF01008198;XM_005405381;XM_005405383;XM_013505009;XM_013505010;XM_013505011;XM_013505012 XP_005405438;XP_005405440;XP_013360463;XP_013360464;XP_013360465;XP_013360466 MODEL 8907303 ncrna LOC102020289 uncharacterized LOC102020289 NW_004955441 9225389 9274569 - 102020289 AGCD01037015;XR_262062 MODEL 8725641 pseudo LOC102018118 protein S100-A10 pseudogene NW_004955507 5694303 5694594 + 102018118 AGCD01065684 MODEL 8700035 pseudo LOC102022452 ubiquitin thioesterase OTUB1-like NW_004955403 808314 811093 - 102022452 AGCD01001708 MODEL 8856983 ncrna LOC102015137 uncharacterized LOC102015137 NW_004955432 4514878 4541603 - 102015137 AGCD01030725;GBDF01044924;XR_261511 MODEL 10110829 protein-coding LOC106149963 translation initiation factor IF-2-like NW_004955458 11162068 11162601 - 106149963 AGCD01047726;GBDF01170947;GBDI01387074;XM_013520921 XP_013376375 MODEL 8866135 protein-coding Tmem98 transmembrane protein 98 INVOLVED IN negative regulation of myelination (ortholog); negative regulation of oligodendrocyte differentiation (ortholog); negative regulation of protein localization to nucleus (ortholog); ASSOCIATED WITH genetic disease (ortholog); Nanophthalmos 4 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); extracellular exosome (ortholog) NW_004955481 7788066 7797433 + 102028537 AGCD01057077;GBCQ01004757;GBDF01110957;XM_005402830 XP_005402887 MODEL 8906377 pseudo LOC102009792 MAP/microtubule affinity-regulating kinase 3-like NW_004955403 31079581 31081821 + 102009792 AGCD01002411 MODEL 8999078 ncrna LOC102023913 uncharacterized LOC102023913 NW_004955485 6363515 6367468 + 102023913 AGCD01058616;GBBH01057707;XR_263909 MODEL 8733061 protein-coding Vasp vasodilator stimulated phosphoprotein ENCODES a protein that exhibits profilin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); axon guidance (ortholog); neural tube closure (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); filopodium (ortholog); focal adhesion (ortholog) NW_004955574 21569 33705 + 102013563 AGCD01075078;GBDF01157071;XM_013509549 XP_013365003 MODEL 8939684 protein-coding Nebl nebulette ENCODES a protein that exhibits actin filament binding (ortholog); cytoskeletal protein binding (ortholog); filamin binding (ortholog); INVOLVED IN cardiac muscle thin filament assembly (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); cardiomyopathy (ortholog); Digeorge Syndrome/Velocardiofacial Syndrome Complex 2 (ortholog); FOUND IN stress fiber (ortholog); Z disc (ortholog) NW_004955429 7559994 7730683 + 102020691 AGCD01028597;AGCD01028598;AGCD01028599;AGCD01028600;AGCD01028601;GBDJ01400345;XM_013515481;XM_013515482;XM_013515483;XM_013515484 XP_013370935;XP_013370936;XP_013370937;XP_013370938 MODEL 8741504 protein-coding Wnt8b Wnt family member 8B ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); gene expression (ortholog); negative regulation of gene expression (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Hirschsprung's disease (ortholog) NW_004955485 9658432 9679371 - 102010268 AGCD01058777;AGCD01058778;AGCD01058779;GBDI01289442;XM_005403912 XP_005403969 MODEL 8742100 pseudo LOC102009053 ribosome biogenesis protein BRX1 homolog pseudogene NW_004955416 27989601 28018980 - 102009053 AGCD01017623;XM_005381644;XR_260424;XR_260425;XR_260426;XR_260427;XR_260428 MODEL 8911878 pseudo LOC102006051 cyclin-G1 pseudogene NW_004955427 21210303 21211288 - 102006051 AGCD01027434 MODEL 10243474 ncrna LOC106149964 uncharacterized LOC106149964 NW_004955402 8012332 8032846 + 106149964 AGCD01000189;GBDF01059519;XR_001236462 MODEL 9038875 ncrna LOC102005710 uncharacterized LOC102005710 NW_004955418 22750893 22756659 + 102005710 AGCD01019292;XR_260582 MODEL 8789403 pseudo LOC102017760 ribosome production factor 2 homolog pseudogene NW_004955414 220864 222594 + 102017760 AGCD01014711 MODEL 8812973 ncrna LOC102019360 uncharacterized LOC102019360 NW_004955455 1777137 1777874 + 102019360 AGCD01045584;GBDF01053108;XR_262814 MODEL 8943419 ncrna LOC102021142 uncharacterized LOC102021142 NW_004955423 24566396 24574514 + 102021142 AGCD01024037;XR_260992 MODEL 8700901 protein-coding LOC102003877 chromosome unknown open reading frame, human C16orf47 NW_004955484 5772487 5791070 - 102003877 AGCD01058271;XM_005415398 XP_005415455 MODEL 8854842 protein-coding S100b S100 calcium binding protein B ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); astrocyte differentiation (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Alzheimer's disease (ortholog); Animal Disease Models (ortholog); FOUND IN ciliary basal body (ortholog); cilium (ortholog); cytoplasm (ortholog) NW_004955407 42972584 42980510 - 102021420 AGCD01007902;GBDI01019684;XM_005375939 XP_005375996 MODEL 10379278 ncrna LOC106149965 uncharacterized LOC106149965 NW_004955458 9802872 9807999 + 106149965 AGCD01047662;GBCE01168777;XR_001236458;XR_001236459 MODEL 10182145 ncrna LOC106150336 uncharacterized LOC106150336 NW_004955472 1698010 1699112 + 106150336 AGCD01053409;GBDK01024649;XR_001237082 MODEL 9007708 protein-coding Spata17 spermatogenesis associated 17 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); Loeys-Dietz syndrome 4 (ortholog); parathyroid carcinoma (ortholog) NW_004955406 599438 800369 - 102007504 AGCD01005621;AGCD01005622;GBDF01179516;XM_005374707;XM_005374709;XM_013519819 XP_005374764;XP_005374766;XP_013375273 MODEL 9038540 protein-coding Phax phosphorylated adaptor for RNA export ENCODES a protein that exhibits mRNA cap binding complex binding (ortholog); toxic substance binding (ortholog); INVOLVED IN RNA stabilization (ortholog); snRNA export from nucleus (ortholog); ASSOCIATED WITH adult onset demyelinating leukodystrophy (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (ortholog); neuronal cell body (ortholog); nucleoplasm (ortholog) NW_004955521 4425382 4442668 + 102019098 AGCD01068262;GBDF01195825;XM_005409329 XP_005409386 MODEL 9002611 protein-coding LOC102022458 translation initiation factor IF-2-like NW_004955405 16186365 16195618 + 102022458 AGCD01004963;GBDF01277426;XM_005374686 XP_005374743 MODEL 8922332 ncrna LOC102021144 uncharacterized LOC102021144 NW_004955496 7675102 7705978 - 102021144 AGCD01062383;GBDF01078340;XR_001231393;XR_001231394;XR_001231395;XR_001231396;XR_264182 MODEL 8766279 pseudo LOC102008641 zinc finger protein OZF-like NW_004955425 1882091 1882998 - 102008641 AGCD01025249 MODEL 8830196 protein-coding LOC102022848 olfactory receptor 63-like NW_004955524 308968 309918 + 102022848 AGCD01068675;XM_005409660 XP_005409717 MODEL 8935355 protein-coding Spata18 spermatogenesis associated 18 ENCODES a protein that exhibits cardiolipin binding (ortholog); identical protein binding (ortholog); molecular condensate scaffold activity (ortholog); INVOLVED IN mitochondrial protein catabolic process (ortholog); mitophagy by internal vacuole formation (ortholog); positive regulation of cardiolipin metabolic process (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); prostate cancer (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955447 18401881 18437878 - 102018448 AGCD01041172;GBBH01000264;GBDJ01139180;XM_013518527;XM_013518528 XP_013373981;XP_013373982 MODEL 9026371 protein-coding LOC102003238 C-C motif chemokine 2-like NW_004955481 8924855 8926701 - 102003238 AGCD01057090;GBDK01146257;XM_005402836 XP_005402893 MODEL 8773011 protein-coding LOC102007172 PRAME family member 23-like NW_004955608 264738 312943 - 102007172 AGCD01077020;AGCD01077021;AGCD01077022;AGCD01077023;AGCD01077024;AGCD01077025;AGCD01077026;AGCD01077027;XM_013510118 XP_013365572 MODEL 8750732 protein-coding Becn1 beclin 1 ENCODES a protein that exhibits GTPase binding (ortholog); identical protein binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN amyloid-beta metabolic process (ortholog); autophagosome assembly (ortholog); autophagosome maturation (ortholog); PARTICIPATES IN autophagy pathway; inositol metabolic pathway; mitochondrial autophagy pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); acute necrotizing pancreatitis (ortholog); alcoholic cardiomyopathy (ortholog); FOUND IN autophagosome (ortholog); cytoplasm (ortholog); cytoplasmic side of mitochondrial outer membrane (ortholog) NW_004955451 16616595 16625731 - 102024414 AGCD01043696;GBCQ01005143;XM_005394481;XM_013519257 XP_005394538;XP_013374711 MODEL 9028448 pseudo LOC102022850 uncharacterized protein C16orf52 homolog B-like NW_004955531 3633746 3634304 - 102022850 AGCD01070077 MODEL 8993438 pseudo LOC102008645 glycolipid transfer protein pseudogene NW_004955501 6968136 6973149 + 102008645 AGCD01064202;XM_005406840 MODEL 8878747 protein-coding Necab1 N-terminal EF-hand calcium binding protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); FOUND IN cilium (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955417 7573861 7737920 + 102012647 AGCD01018008;AGCD01018009;AGCD01018010;AGCD01018011;AGCD01018012;AGCD01018013;AGCD01018014;GBDJ01360857;XM_005381766 XP_005381823 MODEL 8957402 protein-coding LOC102017764 olfactory receptor 51E2 NW_004955414 20281445 20282910 - 102017764 AGCD01015367;XM_005380055 XP_005380112 MODEL 9005834 protein-coding Prrt1b proline rich transmembrane protein 1B NW_004955513 1218016 1221299 + 102024491 AGCD01066848;AGCD01066849;GBDF01179957;XM_005408371 XP_005408428 MODEL 39133548 snrna U4 U4 spliceosomal RNA 8792735 pseudo LOC102022853 protein angel homolog 2-like NW_004955534 654955 656762 - 102022853 AGCD01070461;AGCD01070462 MODEL 8831526 pseudo LOC102017767 UAP56-interacting factor pseudogene NW_004955472 3663252 3663988 + 102017767 AGCD01053517 MODEL 8948170 protein-coding LOC102015143 chromosome unknown open reading frame, human C1orf50 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); glucose transporter type 1 deficiency syndrome 1 (ortholog) NW_004955537 2292430 2301938 + 102015143 AGCD01070921;GBDF01080344;XM_005410617 XP_005410674 MODEL 8941952 protein-coding Necab2 N-terminal EF-hand calcium binding protein 2 ENCODES a protein that exhibits A2A adenosine receptor binding (ortholog); identical protein binding (ortholog); type 5 metabotropic glutamate receptor binding (ortholog); INVOLVED IN negative regulation of G protein-coupled receptor internalization (ortholog); positive regulation of adenosine receptor signaling pathway (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); ASSOCIATED WITH Malonic Aciduria (ortholog); persistent fetal circulation syndrome (ortholog); primary ciliary dyskinesia (ortholog); FOUND IN plasma membrane (ortholog); postsynapse (ortholog); presynapse (ortholog) NW_004955564 257781 279937 - 102026362 AGCD01074193;AGCD01074194;GBCE01037934;GBDK01095160;XM_013509207;XR_001232384 XP_013364661 MODEL 8960421 protein-coding S100g S100 calcium binding protein G PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); gestational diabetes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955519 1623695 1625164 - 102008138 AGCD01067902;XM_005409148;XM_013507002 XP_005409205;XP_013362456 MODEL 8820683 ncrna LOC102023914 uncharacterized LOC102023914 NW_004955420 11098004 11102066 - 102023914 AGCD01020796;GBDF01084297;XR_260701 MODEL 8970434 ncrna LOC102022464 uncharacterized LOC102022464 NW_004955407 26752371 26760950 - 102022464 AGCD01007537;GBDF01242626;XR_001231703;XR_259588 MODEL 8949421 protein-coding Znf287 zinc finger protein 287 INVOLVED IN positive regulation of DNA-templated transcription (ortholog); regulation of cytokine production (ortholog); ASSOCIATED WITH prostate cancer (ortholog) NW_004955467 1878543 1897735 - 102017110 AGCD01051294;GBBH01155467;XM_005399319;XM_005399320;XM_013522191;XM_013522192;XM_013522193 XP_005399376;XP_005399377;XP_013377645;XP_013377646;XP_013377647 MODEL 8986778 protein-coding Tenm2 teneurin transmembrane protein 2 ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); identical protein binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN retrograde trans-synaptic signaling by trans-synaptic protein complex (ortholog); ASSOCIATED WITH esophageal atresia (ortholog); substance-related disorder (ortholog); FOUND IN cell-cell junction (ortholog); dendritic spine (ortholog); extrinsic component of postsynaptic membrane (ortholog) NW_004955408 20150223 21340276 + 102008502 AGCD01008538;AGCD01008539;AGCD01008540;AGCD01008541;AGCD01008542;AGCD01008543;AGCD01008544;AGCD01008545;AGCD01008546;AGCD01008547;AGCD01008548;AGCD01008549;AGCD01008550;AGCD01008551;AGCD01008552;AGCD01008553;GBDF01172483;XM_005376287;XM_005376288;XM_005376289;XM_005376291;XM_005376292;XM_005376294;XM_005376295;XM_005376297;XM_013509101;XM_013509109;XM_013509114 XP_005376344;XP_005376345;XP_005376346;XP_005376348;XP_005376349;XP_005376351;XP_005376352;XP_005376354;XP_013364555;XP_013364563;XP_013364568 MODEL 8976014 pseudo LOC102005715 60S ribosomal protein L7 pseudogene NW_004955487 5975491 5976261 + 102005715 AGCD01059350 MODEL 8824923 protein-coding S100p S100 calcium binding protein P ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN endothelial cell migration (ortholog); ASSOCIATED WITH Mouth Neoplasms (ortholog); polycystic ovary syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955514 3704002 3707098 - 102019423 AGCD01067107;AGCD01067108;GBDF01193973;GBDJ01017243;XM_005408812 XP_005408869 MODEL 9037059 protein-coding Unc13c unc-13 homolog C ENCODES a protein that exhibits calmodulin binding (ortholog); syntaxin binding (ortholog); syntaxin-1 binding (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); negative regulation of synaptic plasticity (ortholog); synaptic vesicle exocytosis (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); clubfoot (ortholog); colorectal cancer (ortholog); FOUND IN calyx of Held (ortholog); parallel fiber to Purkinje cell synapse (ortholog); presynapse (ortholog) NW_004955409 889912 1325136 - 102016350 AGCD01009168;AGCD01009169;AGCD01009170;AGCD01009171;AGCD01009172;AGCD01009173;GBDI01037868;XM_005376625;XM_013510339 XP_005376682;XP_013365793 MODEL 8759327 protein-coding LOC102023555 zinc finger protein 654 NW_004955407 5356497 5435908 - 102023555 AGCD01006914;GBDK01429984;XM_005375530;XM_005375531;XM_005375532;XM_005375534 XP_005375587;XP_005375588;XP_005375589;XP_005375591 MODEL 10063045 protein-coding LOC106149125 uncharacterized LOC106149125 NW_004955404 2441729 2443742 + 106149125 AGCD01003258;GBCE01111171;XM_013516998;XR_001235089 XP_013372452 MODEL 9042592 protein-coding LOC102015149 aquaporin-12-like NW_004955542 836900 842620 - 102015149 AGCD01071481;XM_005411153 XP_005411210 MODEL 8891058 protein-coding Spata19 spermatogenesis associated 19 INVOLVED IN sperm mitochondrion organization (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Jacobsen Syndrome (ortholog); schizophrenia (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog); sperm flagellum (ortholog) NW_004955412 34684298 34689163 - 102027159 AGCD01013391;GBDF01007327;XM_005378581;XM_005378582;XM_013510989;XM_013510990 XP_005378638;XP_005378639;XP_013366443;XP_013366444 MODEL 8735252 ncrna LOC102020291 uncharacterized LOC102020291 NW_004955442 10175563 10177047 - 102020291 AGCD01037700;GBDF01127172;XR_262131;XR_262132;XR_262133 MODEL 8930203 protein-coding Begain brain enriched guanylate kinase associated INVOLVED IN evoked excitatory postsynaptic potential (ortholog); regulation of postsynaptic neurotransmitter receptor activity (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Kagami-Ogata syndrome (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN dendrite (ortholog); glutamatergic synapse (ortholog); neuronal cell body (ortholog) NW_004955438 21572080 21580311 - 102018650 AGCD01035547;GBDF01209194;XM_013517281 XP_013372735 MODEL 8905245 protein-coding Sgip1 SH3GL interacting endocytic adaptor 1 ENCODES a protein that exhibits microtubule binding (ortholog); phospholipid binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN energy homeostasis (ortholog); positive regulation of eating behavior (ortholog); positive regulation of feeding behavior (ortholog); ASSOCIATED WITH congenital disorder of glycosylation It (ortholog); intellectual disability (ortholog); FOUND IN AP-2 adaptor complex (ortholog); clathrin-coated pit (ortholog); clathrin-coated vesicle (ortholog) NW_004955423 24155401 24353166 - 102019712 AGCD01024031;AGCD01024032;AGCD01024033;AGCD01024034;AGCD01024035;GBDK01397860;XM_013514516;XM_013514517;XM_013514518;XM_013514519;XM_013514520 XP_013369970;XP_013369971;XP_013369972;XP_013369973;XP_013369974 MODEL 8793580 protein-coding Rbm42 RNA binding motif protein 42 INVOLVED IN negative regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN U4/U6 x U5 tri-snRNP complex (ortholog) NW_004955468 4844780 4854261 + 102024989 AGCD01051922;GBDI01067655;XM_005400070;XM_005400071 XP_005400127;XP_005400128 MODEL 8719927 protein-coding Tenm3 teneurin transmembrane protein 3 ENCODES a protein that exhibits identical protein binding (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN camera-type eye morphogenesis (ortholog); homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); positive regulation of neuron projection development (ortholog); ASSOCIATED WITH cocaine dependence (ortholog); Cocaine-Related Disorders (ortholog); genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955403 25920919 26534817 - 102013237 AGCD01002295;AGCD01002296;AGCD01002297;AGCD01002298;AGCD01002299;AGCD01002300;AGCD01002301;AGCD01002302;AGCD01002303;AGCD01002304;AGCD01002305;AGCD01002306;AGCD01002307;AGCD01002308;GBCB01121667;XM_013513152;XM_013513154 XP_013368606;XP_013368608 MODEL 9027148 pseudo LOC102007484 arylacetamide deacetylase-like 2 pseudogene NW_004955448 3318723 3319795 - 102007484 AGCD01041327 MODEL 10139373 ncrna LOC106150337 uncharacterized LOC106150337 NW_004955402 10721653 10722383 - 106150337 AGCD01000288;GBDJ01161572;XR_001237098 MODEL 8719809 protein-coding Prrt2 proline rich transmembrane protein 2 ENCODES a protein that exhibits SH3 domain binding (ortholog); syntaxin-1 binding (ortholog); INVOLVED IN negative regulation of short-term synaptic potentiation (ortholog); negative regulation of SNARE complex assembly (ortholog); neuromuscular process controlling posture (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); benign familial infantile seizures 2 (ortholog); FOUND IN axon terminus (ortholog); glutamatergic synapse (ortholog); membrane (ortholog) NW_004955493 7144389 7148613 - 102008740 AGCD01061156;GBCC01002602;XM_013504775;XM_013504776;XM_013504777;XM_013504778 XP_013360229;XP_013360230;XP_013360231;XP_013360232 MODEL 8831152 protein-coding Vat1 vesicle amine transport 1 INVOLVED IN negative regulation of mitochondrial fusion (ortholog); FOUND IN mitochondrial outer membrane (ortholog) NW_004955451 16797933 16800884 - 102003828 AGCD01043707;GBBH01030872;GBDI01009601;XM_013519246 XP_013374700 MODEL 8945910 protein-coding LOC102021146 zinc finger protein 709-like NW_004955499 106996 108903 - 102021146 AGCD01063185;XM_013505558 XP_013361012 MODEL 9031861 ncrna LOC102017768 uncharacterized LOC102017768 NW_004955474 2920107 2934356 - 102017768 AGCD01054312;AGCD01054313;AGCD01054314;GBDF01015351;XR_001230742;XR_263592 MODEL 8831292 pseudo LOC102007485 BTB/POZ domain-containing protein 7 pseudogene NW_004955588 764940 776028 - 102007485 AGCD01076122 MODEL 9036237 protein-coding Scn4a sodium voltage-gated channel alpha subunit 4 ENCODES a protein that exhibits voltage-gated sodium channel activity (ortholog); INVOLVED IN choline transport (ortholog); monoatomic cation transport (ortholog); potassium ion transport (ortholog); ASSOCIATED WITH congenital myasthenic syndrome (ortholog); congenital myasthenic syndrome 16 (ortholog); congenital myopathy (ortholog); FOUND IN plasma membrane (ortholog); voltage-gated sodium channel complex (ortholog) NW_004955478 7861585 7906192 + 102017869 AGCD01055998;GBCB01000298;XM_005402177;XM_013503233 XP_005402234;XP_013358687 MODEL 8752335 protein-coding Krt6a keratin 6A INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); defense response to Gram-positive bacterium (ortholog); intermediate filament organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); pachyonychia congenita (ortholog); Pachyonychia Congenita 3 (ortholog) NW_004955547 2902962 2907670 - 102010416 AGCD01072301;GBDI01262090;XM_005411944 XP_005412001 MODEL 8754680 protein-coding Tenm4 teneurin transmembrane protein 4 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cardiac cell fate specification (ortholog); cardiac muscle cell proliferation (ortholog); central nervous system myelin formation (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); cleft palate (ortholog); essential tremor 5 (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); neuron projection (ortholog) NW_004955414 12649128 13364523 + 102003113 AGCD01015101;AGCD01015102;AGCD01015103;AGCD01015104;AGCD01015105;AGCD01015106;GBCE01008780;XM_013511954;XM_013511955;XM_013511956;XM_013511957;XM_013511958;XM_013511959;XM_013511960;XM_013511961 XP_013367408;XP_013367409;XP_013367410;XP_013367411;XP_013367412;XP_013367413;XP_013367414;XP_013367415 MODEL 8728223 protein-coding LOC102008649 olfactory receptor 5M11-like NW_004955511 1679591 1680559 - 102008649 AGCD01066377;XM_005407971 XP_005408028 MODEL 8849381 protein-coding Znf292 zinc finger protein 292 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal dominant intellectual developmental disorder (ortholog); autosomal dominant intellectual developmental disorder 64 (ortholog); FOUND IN nucleus (ortholog) NW_004955411 14182059 14263109 + 102023991 AGCD01011910;AGCD01011911;AGCD01011912;GBCE01085629;XM_005377715 XP_005377772 MODEL 8775663 protein-coding Six2 SIX homeobox 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN anterior/posterior axis specification (ortholog); cell migration (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); CAKUT (ortholog); chronic kidney disease (ortholog); FOUND IN nucleus (ortholog) NW_004955441 12029530 12033214 - 102008033 AGCD01037116;GBBH01030680;GBCB01005025;XM_005390965 XP_005391022 MODEL 8932229 ncrna LOC102005716 uncharacterized LOC102005716 NW_004955421 23197095 23198981 + 102005716 AGCD01022174;GBCB01036865;XR_260820 MODEL 39132491 snrna U6 U6 spliceosomal RNA 10325213 ncrna LOC106149966 uncharacterized LOC106149966 NW_004955458 9762195 9774375 + 106149966 AGCD01047662;XR_001236460 MODEL 8752489 ncrna LOC102015150 uncharacterized LOC102015150 NW_004955438 16894210 16895713 - 102015150 AGCD01035425;GBDF01025286;XR_261940 MODEL 8773177 protein-coding Klc1 kinesin light chain 1 ENCODES a protein that exhibits tubulin binding (ortholog); INVOLVED IN axo-dendritic transport (ortholog); intracellular protein transport (ortholog); protein localization to synapse (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); breast cancer (ortholog); Breast Cancer, Familial (ortholog); FOUND IN axon (ortholog); ciliary rootlet (ortholog); cytoplasm (ortholog) NW_004955538 2462491 2503398 + 102015145 AGCD01071127;GBBH01032249;XM_005410798;XM_005410799;XM_005410800;XM_005410801;XM_005410803;XM_005410805;XM_005410807;XM_013507851;XM_013507852;XR_001232088;XR_001232089 XP_005410855;XP_005410856;XP_005410857;XP_005410858;XP_005410860;XP_005410862;XP_005410864;XP_013363305;XP_013363306 MODEL 8762066 pseudo LOC102008651 olfactory receptor 5W2-like NW_004955511 816950 817885 + 102008651 AGCD01066344 MODEL 8865727 pseudo LOC102013359 cryptochrome-1-like NW_004955402 23388755 23392703 + 102013359 AGCD01000622 MODEL 8847616 pseudo LOC102022856 laccase domain-containing protein 1-like NW_004955437 12874324 12875703 + 102022856 AGCD01034624 MODEL 8982058 pseudo LOC102024889 40S ribosomal protein S20 pseudogene NW_004955468 10126045 10126569 + 102024889 AGCD01052067 MODEL 39132492 snrna U6 U6 spliceosomal RNA 9034410 protein-coding Sgk1 serum/glucocorticoid regulated kinase 1 ENCODES a protein that exhibits 3-phosphoinositide-dependent protein kinase binding (ortholog); protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to aldosterone (ortholog); cellular response to insulin stimulus (ortholog); DNA damage response (ortholog); PARTICIPATES IN glucocorticoid signaling pathway; insulin signaling pathway; mTOR signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN cytosol (ortholog); nuclear speck (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955439 2399992 2406587 + 102006075 AGCD01035643;AGCD01035644;GBCE01001862;GBDK01016728;XM_013517384 XP_013372838 MODEL 8906626 pseudo LOC102022468 NHP2-like protein 1 pseudogene NW_004955408 13974627 13976107 - 102022468 AGCD01008379 MODEL 8930772 ncrna LOC102023915 uncharacterized LOC102023915 NW_004955420 25461108 25462326 + 102023915 AGCD01021359;GBDF01188263;XR_001233742 MODEL 8809063 protein-coding Sp9 Sp9 transcription factor ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN embryonic limb morphogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); generalized epilepsy (ortholog); intellectual disability (ortholog) NW_004955449 1003462 1006023 - 102007715 AGCD01041780;AGCD01041781;XM_005393191 XP_005393248 MODEL 8962566 protein-coding LOC102007173 translation initiation factor IF-2-like NW_004955451 5638379 5640035 + 102007173 AGCD01043171;GBDF01005683;XM_013519255 XP_013374709 MODEL 8854865 pseudo LOC102022860 speckle-type POZ protein pseudogene NW_004955546 45090 45765 + 102022860 AGCD01071945 MODEL 39132493 snrna U6 U6 spliceosomal RNA 8764765 protein-coding Denr density regulated re-initiation and release factor INVOLVED IN formation of translation preinitiation complex (ortholog); IRES-dependent viral translational initiation (ortholog); ribosome disassembly (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN cytoplasm (ortholog) NW_004955482 5954319 5970832 - 102027851 AGCD01057357;AGCD01057358;AGCD01057359;GBCB01020540;XM_005403074 XP_005403131 MODEL 10204475 protein-coding LOC106146850 rho GTPase-activating protein 33-like NW_004955498 8248942 8261624 + 106146850 AGCD01063169;AGCD01063170;GBCE01025191;GBDJ01298909;XM_013505545 XP_013360999 MODEL 8765725 protein-coding LOC102012123 uncharacterized LOC102012123 NW_004955436 1773036 1779567 - 102012123 AGCD01033588;AGCD01033589;GBDF01021603;XM_013516581 XP_013372035 MODEL 8726987 pseudo LOC102023558 elongation factor 1-alpha 1 pseudogene NW_004955457 3190550 3192322 + 102023558 AGCD01046765 MODEL 10294483 ncrna LOC106149126 uncharacterized LOC106149126 NW_004955437 6436154 6445269 + 106149126 AGCD01034439;XR_001235090 MODEL 8728259 protein-coding LOC102009793 uncharacterized LOC102009793 NW_004955451 10468343 10479347 + 102009793 AGCD01043324;XM_013519062 XP_013374516 MODEL 8944231 pseudo LOC102023917 CCAAT/enhancer-binding protein gamma-like NW_004955489 9110734 9151937 - 102023917 AGCD01060026;AGCD01060027;AGCD01060028 MODEL 8996849 protein-coding Sgk2 serum/glucocorticoid regulated kinase 2 ENCODES a protein that exhibits potassium channel regulator activity (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); Experimental Liver Cirrhosis (ortholog); focal epilepsy (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955445 13581145 13625320 - 102026270 AGCD01039794;AGCD01039795;AGCD01039796;AGCD01039797;AGCD01039798;AGCD01039799;GBCQ01033867;XM_005392499;XM_013518253;XR_001235575 XP_005392556;XP_013373707 MODEL 8792797 protein-coding Tmem9b TMEM9 domain family member B INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); FOUND IN early endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955414 24695541 24710692 - 102025677 AGCD01015553;GBCE01031427;XM_005380250;XM_013512074 XP_005380307;XP_013367528 MODEL 9011228 pseudo LOC102016927 60S ribosomal protein L12 pseudogene NW_004955493 6597653 6607823 - 102016927 AGCD01061121 MODEL 10223534 ncrna LOC106146851 uncharacterized LOC106146851 NW_004955499 7394095 7416083 - 106146851 AGCD01063585;GBDK01256000;XR_001231454 MODEL 9008631 pseudo LOC102005717 hippocampus abundant transcript 1 protein pseudogene NW_004955490 4529263 4530710 - 102005717 AGCD01060188 MODEL 8761863 protein-coding Htra2 HtrA serine peptidase 2 ENCODES a protein that exhibits identical protein binding (ortholog); peptidase activity (ortholog); protein serine/threonine kinase inhibitor activity (ortholog); INVOLVED IN adult locomotory behavior (ortholog); adult walking behavior (ortholog); cellular response to growth factor stimulus (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 8 (ortholog); Alzheimer's disease (ortholog); asphyxia neonatorum (ortholog); FOUND IN CD40 receptor complex (ortholog); chromatin (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955424 11255756 11259170 - 102023165 AGCD01024559;GBDI01134304;XM_005385489 XP_005385546 MODEL 8836200 protein-coding Depdc1 DEP domain containing 1 INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Hirschsprung's disease (ortholog); intellectual disability (ortholog); FOUND IN nucleus (ortholog); transcription repressor complex (ortholog) NW_004955423 23137841 23157548 + 102011214 AGCD01023994;GBDF01159170;XM_005385261;XM_005385263;XM_005385265;XM_005385267;XM_013514542 XP_005385318;XP_005385320;XP_005385322;XP_005385324;XP_013369996 MODEL 8940671 protein-coding LOC102006056 olfactory receptor 8J3-like NW_004955511 1507684 1508625 + 102006056 AGCD01066370;XM_005407964 XP_005408021 MODEL 8902944 protein-coding Tacc2 transforming acidic coiled-coil containing protein 2 ENCODES a protein that exhibits nuclear receptor binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN astral microtubule organization (ortholog); cell population proliferation (ortholog); cerebral cortex development (ortholog); ASSOCIATED WITH 2-Methylbutyryl-CoA Dehydrogenase Deficiency (ortholog); craniosynostosis (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955477 338990 552100 + 102016051 AGCD01055485;AGCD01055486;AGCD01055487;AGCD01055488;AGCD01055489;AGCD01055490;AGCD01055491;GBDF01046178;XM_005401923;XM_005401927;XM_005401929;XM_005401930;XM_013503062;XM_013503063;XM_013503064;XM_013503065;XM_013503066;XM_013503067;XM_013503068;XM_013503069 XP_005401980;XP_005401984;XP_005401986;XP_005401987;XP_013358516;XP_013358517;XP_013358518;XP_013358519;XP_013358520;XP_013358521;XP_013358522;XP_013358523 MODEL 10167146 protein-coding LOC106146852 collagen alpha-1(I) chain-like NW_004955499 958639 964034 - 106146852 AGCD01063301;AGCD01063302;GBCE01085041;XM_013505553 XP_013361007 MODEL 8761020 protein-coding Necab3 N-terminal EF-hand calcium binding protein 3 INVOLVED IN regulation of amyloid precursor protein biosynthetic process (ortholog); ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955422 27644913 27660538 + 102003462 AGCD01023331;GBCB01085847;GBDJ01171994;XM_013514323;XM_013514324 XP_013369777;XP_013369778 MODEL 9015840 protein-coding LOC102019361 serine/threonine-protein kinase B-raf-like NW_004955407 3772121 3773907 - 102019361 AGCD01006864;GBDJ01076254;XM_005375516 XP_005375573 MODEL 8709536 ncrna LOC102022469 uncharacterized LOC102022469 NW_004955408 24472374 24475060 - 102022469 AGCD01008610;GBCE01106540;XR_001231905;XR_001231907 MODEL 8940433 pseudo LOC102020295 mitochondrial uncoupling protein 2 pseudogene NW_004955442 19239377 19240202 - 102020295 AGCD01038044 MODEL 39133549 snrna U4 U4 spliceosomal RNA 8931711 ncrna LOC102022862 uncharacterized LOC102022862 NW_004955555 1627996 1630683 + 102022862 AGCD01073092;GBCQ01164340;XR_264966 MODEL 8710965 protein-coding Spata2 spermatogenesis associated 2 ENCODES a protein that exhibits protein-containing complex binding (ortholog); signaling receptor complex adaptor activity (ortholog); ubiquitin-specific protease binding (ortholog); INVOLVED IN necroptotic process (ortholog); protein K63-linked deubiquitination (ortholog); protein linear deubiquitination (ortholog); FOUND IN cytoplasm (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955445 8281280 8292951 + 102003595 AGCD01039573;AGCD01039574;GBCB01074585;GBDF01180673;XM_013518262 XP_013373716 MODEL 8893878 protein-coding Tacc3 transforming acidic coiled-coil containing protein 3 ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN astral microtubule organization (ortholog); cell population proliferation (ortholog); cerebral cortex development (ortholog); ASSOCIATED WITH cherubism (ortholog); endometrial carcinoma (ortholog); hepatocellular carcinoma (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955514 973457 986640 + 102016301 AGCD01067028;GBCQ01189113;XM_005408701 XP_005408758 MODEL 8915419 protein-coding Unc13d unc-13 homolog D ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN defense response to virus (ortholog); dense core granule priming (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); Familial Hemophagocytic Lymphohistiocytoses (ortholog); familial hemophagocytic lymphohistiocytosis 3 (ortholog); FOUND IN cytosol (ortholog); exocytic vesicle (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955506 6407073 6423406 + 102010928 AGCD01065420;GBDK01368900;XM_005407474;XM_005407476;XM_013506052;XM_013506053 XP_005407531;XP_005407533;XP_013361506;XP_013361507 MODEL 39133424 snrna U4 U4 spliceosomal RNA 8826871 ncrna LOC102022864 uncharacterized LOC102022864 NW_004955556 43579 59320 - 102022864 AGCD01073158;AGCD01073159;GBDF01042945;XR_001232316;XR_264973 MODEL 8715429 ncrna LOC102009800 uncharacterized LOC102009800 NW_004955407 17251314 17300456 + 102009800 AGCD01007243;AGCD01007244;AGCD01007245;AGCD01007246;GBDF01192314;XR_001231024 MODEL 8813694 protein-coding Lmntd2 lamin tail domain containing 2 INVOLVED IN positive regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); Chanarin-Dorfman syndrome (ortholog); Costello syndrome (ortholog) NW_004955476 11487918 11493281 + 102018826 AGCD01055460;GBDK01360050;XM_005401846;XM_005401847;XM_005401848;XM_005401849;XM_005401850;XM_005401851;XM_005401852;XM_005401853;XM_005401854;XM_005401855;XM_005401856;XM_005401857;XM_005401858;XM_005401859;XM_013502920;XM_013502921 XP_005401903;XP_005401904;XP_005401905;XP_005401906;XP_005401907;XP_005401908;XP_005401909;XP_005401910;XP_005401911;XP_005401912;XP_005401913;XP_005401914;XP_005401915;XP_005401916;XP_013358374;XP_013358375 MODEL 8890002 protein-coding LOC102021149 WAS/WASL-interacting protein family member 3-like NW_004955425 16695120 16696208 - 102021149 AGCD01025618;GBDF01178123;XM_013514909 XP_013370363 MODEL 8770379 protein-coding Sgk3 serum/glucocorticoid regulated kinase family member 3 ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN negative regulation of extrinsic apoptotic signaling pathway in absence of ligand (ortholog); ASSOCIATED WITH hypotrichosis (ortholog); prostate cancer (ortholog); FOUND IN cytoplasmic vesicle (ortholog) NW_004955444 12385747 12501589 - 102013659 AGCD01039071;AGCD01039072;AGCD01039073;AGCD01039074;GBCQ01126883;XM_005392140;XM_005392141;XM_005392143;XM_013518177;XM_013518178 XP_005392197;XP_005392198;XP_005392200;XP_013373631;XP_013373632 MODEL 8820360 protein-coding LOC102008652 heterogeneous nuclear ribonucleoprotein A1-like NW_004955514 3637451 3647575 + 102008652 AGCD01067102;XM_013506747 XP_013362201 MODEL 8743980 protein-coding Ephx1 epoxide hydrolase 1 ENCODES a protein that exhibits cis-stilbene-oxide hydrolase activity (ortholog); enzyme binding (ortholog); epoxide hydrolase activity (ortholog); INVOLVED IN arachidonate metabolic process (ortholog); cellular response to glucocorticoid stimulus (ortholog); diol biosynthetic process (ortholog); PARTICIPATES IN carbamazepine pharmacokinetics pathway; phenytoin pharmacodynamics pathway; ASSOCIATED WITH Abnormalities, Drug-Induced (ortholog); Acute Lung Injury (ortholog); aflatoxins-related hepatocellular carcinoma (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); membrane (ortholog) NW_004955520 116363 142983 - 102004192 AGCD01068006;AGCD01068007;AGCD01068008;GBBH01000987;GBDI01022276;XM_013507052 XP_013362506 MODEL 8858827 protein-coding LOC102018121 vomeronasal type-1 receptor 90-like NW_004955429 12382792 12383739 + 102018121 AGCD01028715;XM_005387248 XP_005387305 MODEL 8753085 pseudo LOC102017770 IST1 homolog NW_004955416 24322305 24340636 - 102017770 AGCD01017567 MODEL 9055363 ncrna LOC102022866 uncharacterized LOC102022866 NW_004955447 13365498 13374695 - 102022866 AGCD01040969;GBDF01190773;XR_262424 MODEL 9029836 protein-coding LOC102009805 translation initiation factor IF-2-like NW_004955408 1538854 1542633 - 102009805 AGCD01007963;AGCD01007964;GBCE01168250;XM_013507120 XP_013362574 MODEL 8891103 ncrna LOC102028619 uncharacterized LOC102028619 NW_004955459 14398875 14418943 + 102028619 AGCD01048299;GBDF01248575;XR_263018 MODEL 8834570 protein-coding Tent2 terminal nucleotidyltransferase 2 ENCODES a protein that exhibits poly(A) RNA polymerase activity (ortholog); INVOLVED IN dark adaptation (ortholog); hematopoietic progenitor cell differentiation (ortholog); hippocampus development (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN glutamatergic synapse (ortholog); nucleus (ortholog); perforant pathway to dendrate granule cell synapse (ortholog) NW_004955425 21518154 21576068 - 102012221 AGCD01025798;GBDF01154485;XM_005386009;XM_005386010 XP_005386066;XP_005386067 MODEL 9029023 protein-coding LOC102021151 cytochrome c oxidase copper chaperone ENCODES a protein that exhibits copper chaperone activity (ortholog); copper ion binding (ortholog); cuprous ion binding (ortholog); INVOLVED IN heart development (ortholog); mitochondrial cytochrome c oxidase assembly (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH Chronic Hepatitis (ortholog); Lung Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955427 19376482 19384270 - 102021151 AGCD01027366;GBDK01000954;XM_005386454 XP_005386511 MODEL 8777594 protein-coding Six3 SIX homeobox 3 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN apoptotic process involved in development (ortholog); brain development (ortholog); camera-type eye development (ortholog); ASSOCIATED WITH genetic disease (ortholog); holoprosencephaly (ortholog); holoprosencephaly 2 (ortholog); FOUND IN nucleus (ortholog) NW_004955441 11966389 11978545 + 102007703 AGCD01037115;AGCD01037116;GBBH01065571;XM_005390963;XM_013517631 XP_005391020;XP_013373085 MODEL 8857313 protein-coding Bend2 BEN domain containing 2 INVOLVED IN chromatin organization (ortholog); double-strand break repair (ortholog); double-strand break repair via classical nonhomologous end joining (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Coffin-Lowry syndrome (ortholog); developmental and epileptic encephalopathy 2 (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955519 104726 155418 + 102029432 AGCD01067855;GBDF01303209;XM_013506980;XM_013506981 XP_013362434;XP_013362435 MODEL 8812114 protein-coding Wnt9a Wnt family member 9A ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); cartilage development (ortholog); chondrocyte differentiation (ortholog); PARTICIPATES IN altered Wnt signaling, canonical pathway; pancreatic cancer pathway; Wnt signaling pathway; ASSOCIATED WITH breast cancer (ortholog); cholangiocarcinoma (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955581 422028 438321 + 102016863 AGCD01075672;GBCB01076994;XM_005414245 XP_005414302 MODEL 8780363 ncrna LOC102023562 uncharacterized LOC102023562 NW_004955410 27030216 27035415 - 102023562 AGCD01011208;GBCQ01121784;XR_259869 MODEL 39133061 snrna U6 U6 spliceosomal RNA 8977764 ncrna LOC102016931 uncharacterized LOC102016931 NW_004955424 15861727 15870549 + 102016931 AGCD01024733;GBDJ01387760;XR_261069 MODEL 9053622 protein-coding LOC102020299 keratin, type I cytoskeletal 12 NW_004955451 15302354 15307688 - 102020299 AGCD01043604;AGCD01043605;GBCQ01166155;XM_005394376 XP_005394433 MODEL 9054417 protein-coding Unc45a unc-45 myosin chaperone A ENCODES a protein that exhibits Hsp90 protein binding (ortholog); INVOLVED IN chaperone-mediated protein folding (ortholog); ASSOCIATED WITH Aagenaes syndrome (ortholog); Bloom syndrome (ortholog); D-2-hydroxyglutaric aciduria 2 (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); nuclear speck (ortholog) NW_004955416 14999692 15012581 + 102020006 AGCD01017295;GBCQ01035695;XM_005381524;XM_005381525 XP_005381581;XP_005381582 MODEL 9054941 pseudo LOC102007487 uncharacterized LOC102007487 NW_004955402 44529952 44533463 + 102007487 AGCD01001118 MODEL 9049007 protein-coding Wnt9b Wnt family member 9B ENCODES a protein that exhibits co-receptor binding (ortholog); receptor ligand activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); branching morphogenesis of an epithelial tube (ortholog); canonical Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH chronic kidney disease (ortholog); genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog) NW_004955478 10816405 10841416 + 102003128 AGCD01056151;AGCD01056152;GBCQ01093789;XM_005402302 XP_005402359 MODEL 8762028 protein-coding LOC102007488 vomeronasal type-1 receptor 2-like NW_004955603 278326 279225 + 102007488 AGCD01076825;XM_005414837 XP_005414894 MODEL 39132495 snrna U6 U6 spliceosomal RNA 8970669 protein-coding Krt7 keratin 7 ASSOCIATED WITH cholangiocarcinoma (ortholog); Chronic Hepatitis (ortholog); Copper-Overload Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intermediate filament cytoskeleton (ortholog) NW_004955547 2584425 2598770 + 102006396 AGCD01072285;AGCD01072286;GBCQ01139837;XM_005411933 XP_005411990 MODEL 8730375 protein-coding Znf296 zinc finger protein 296 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); spermatogenesis (ortholog); FOUND IN nucleus (ortholog) NW_004955555 2109980 2114002 - 102021922 AGCD01073130;GBDJ01406175;XM_005412546 XP_005412603 MODEL 9064735 protein-coding LOC102017774 haptoglobin NW_004955484 4738412 4742596 + 102017774 AGCD01058231;GBDJ01008430;XM_005403528 XP_005403585 MODEL 39132496 snrna U6 U6 spliceosomal RNA 8789474 protein-coding Vat1l vesicle amine transport 1 like ASSOCIATED WITH autism spectrum disorder (ortholog); developmental and epileptic encephalopathy 28 (ortholog) NW_004955522 1001814 1162948 + 102024605 AGCD01068355;AGCD01068356;GBCE01096495;XM_005409340 XP_005409397 MODEL 39133062 snrna U6 U6 spliceosomal RNA 39132497 snrna U6 U6 spliceosomal RNA 8865295 ncrna LOC102024517 uncharacterized LOC102024517 NW_004955447 14334061 14335005 - 102024517 AGCD01041000;GBDF01124752;XR_262426 MODEL 8809338 protein-coding Lmo1 LIM domain only 1 INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of T cell homeostatic proliferation (ortholog); ASSOCIATED WITH neuroblastoma (ortholog); T-cell acute lymphoblastic leukemia (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955414 24021275 24072098 - 102017224 AGCD01015532;AGCD01015533;GBDI01322766;XM_005380218;XM_005380219;XM_005380220;XM_013511707;XM_013511708 XP_005380275;XP_005380276;XP_005380277;XP_013367161;XP_013367162 MODEL 9054152 protein-coding Depdc1b DEP domain containing 1B INVOLVED IN cell migration (ortholog); positive regulation of Wnt signaling pathway (ortholog); ASSOCIATED WITH Acrodysostosis 2, with or without Hormone Resistance (ortholog); Cockayne syndrome A (ortholog); COVID-19 (ortholog) NW_004955446 7792778 7857218 + 102005980 AGCD01040130;AGCD01040131;AGCD01040132;GBDF01121403;XM_005392659;XM_005392660 XP_005392716;XP_005392717 MODEL 39133063 snrna U6 U6 spliceosomal RNA 8993315 protein-coding LOC102007174 cocaine esterase-like NW_004955767 9802 20242 - 102007174 AGCD01078309;AGCD01078310;GBDJ01038301;XM_005415102 XP_005415159 MODEL 39132498 snrna U6 U6 spliceosomal RNA 8699556 protein-coding Ephx2 epoxide hydrolase 2 ENCODES a protein that exhibits epoxide hydrolase activity (ortholog); lipid phosphatase activity (ortholog); lysophosphatidic acid phosphatase activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); dephosphorylation (ortholog); epoxide metabolic process (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Lung Injury (ortholog); atherosclerosis (ortholog); FOUND IN cytosol (ortholog); peroxisome (ortholog) NW_004955403 49999563 50038800 + 102005434 AGCD01002954;AGCD01002955;GBBH01062366;XM_005373744 XP_005373801 MODEL 10228638 ncrna LOC106149127 uncharacterized LOC106149127 NW_004955404 2840575 2842004 - 106149127 AGCD01003265;GBDF01223784;XR_001235092 MODEL 8731158 protein-coding LOC102022471 olfactory receptor 6C2 NW_004955458 2877948 2878895 + 102022471 AGCD01047255;XM_005397503 XP_005397560 MODEL 8836488 protein-coding LOC102024519 vomeronasal type-1 receptor 1-like NW_004955584 372741 373664 - 102024519 AGCD01075940;XM_005414410 XP_005414467 MODEL 8773230 protein-coding Ppp1cb protein phosphatase 1 catalytic subunit beta ENCODES a protein that exhibits myosin-light-chain-phosphatase activity (ortholog); phosphatase activity (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN circadian regulation of gene expression (ortholog); entrainment of circadian clock by photoperiod (ortholog); protein dephosphorylation (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; dopamine signaling pathway; glycogen biosynthetic pathway; ASSOCIATED WITH Dandy-Walker syndrome (ortholog); genetic disease (ortholog); Noonan syndrome (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955469 10657029 10682398 + 102015501 AGCD01052544;GBCQ01003561;XM_005400536;XM_013522618 XP_005400593;XP_013378072 MODEL 39133064 snrna U6 U6 spliceosomal RNA 39132499 snrna U6 U6 spliceosomal RNA 8971880 protein-coding Tacr1 tachykinin receptor 1 ENCODES a protein that exhibits substance P receptor activity (ortholog); INVOLVED IN aggressive behavior (ortholog); angiotensin-mediated drinking behavior (ortholog); associative learning (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); acute necrotizing pancreatitis (ortholog); alcohol use disorder (ortholog); FOUND IN cell body (ortholog); cell periphery (ortholog); cell surface (ortholog) NW_004955424 10614340 10761872 + 102018411 AGCD01024522;AGCD01024523;AGCD01024524;AGCD01024525;AGCD01024526;GBBH01188694;XM_005385472 XP_005385529 MODEL 8818755 protein-coding Six4 SIX homeobox 4 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN embryonic cranial skeleton morphogenesis (ortholog); embryonic skeletal system morphogenesis (ortholog); fungiform papilla morphogenesis (ortholog); ASSOCIATED WITH Branchiootic Syndrome 3 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955466 8902728 8915685 + 102014993 AGCD01051004;AGCD01051005;GBDI01052983;XM_005399170;XM_005399171;XM_005399172;XM_013521927 XP_005399227;XP_005399228;XP_005399229;XP_013377381 MODEL 9009417 protein-coding Scn4b sodium voltage-gated channel beta subunit 4 ENCODES a protein that exhibits sodium channel regulator activity (ortholog); transmembrane transporter binding (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN AV node cell action potential (ortholog); cardiac muscle cell action potential involved in contraction (ortholog); cardiac muscle contraction (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); dilated cardiomyopathy (ortholog); FOUND IN intercalated disc (ortholog); plasma membrane (ortholog); voltage-gated sodium channel complex (ortholog) NW_004955412 19312697 19330913 - 102006111 AGCD01012950;GBCB01003984;XM_005378229 XP_005378286 MODEL 8708315 protein-coding LOC102006058 olfactory receptor 5D16-like NW_004955511 662118 663074 + 102006058 AGCD01066337;XM_005408204 XP_005408261 MODEL 8824359 pseudo LOC102024520 protein DBF4 homolog A-like NW_004955612 137320 137941 + 102024520 AGCD01077180 MODEL 39133065 snrna U6 U6 spliceosomal RNA 8861930 protein-coding Phb1 prohibitin 1 ENCODES a protein that exhibits complement component C3a binding (ortholog); complement component C3b binding (ortholog); enzyme binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); antiviral innate immune response (ortholog); B cell activation (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); Brain Injuries (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); early endosome (ortholog) NW_004955451 12110290 12119870 + 102025749 AGCD01043375;GBCB01000499;XM_005394212;XM_005394213 XP_005394269;XP_005394270 MODEL 10350229 protein-coding LOC106146853 zinc finger protein 563-like NW_004955499 278935 281461 + 106146853 AGCD01063210;XM_013505561 XP_013361015 MODEL 8833451 protein-coding S100pbp S100P binding protein ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); Infantile-Onset Multisystem Neurologic, Endocrine, and Pancreatic Disease (ortholog); FOUND IN cytosol (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955452 11078170 11114061 + 102027937 AGCD01044323;AGCD01044324;AGCD01044325;AGCD01044326;AGCD01044327;GBDK01169419;XM_005395086;XM_005395087;XM_005395088;XM_005395089;XM_005395091;XM_005395092;XM_005395093;XM_013519554;XM_013519555 XP_005395143;XP_005395144;XP_005395145;XP_005395146;XP_005395148;XP_005395149;XP_005395150;XP_013375008;XP_013375009 MODEL 8719296 protein-coding Unc45b unc-45 myosin chaperone B ENCODES a protein that exhibits Hsp90 protein binding (ortholog); INVOLVED IN chaperone-mediated protein folding (ortholog); ASSOCIATED WITH cataract 43 (ortholog); Craniofacial Abnormalities (ortholog); dilated cardiomyopathy 1A (ortholog); FOUND IN cytosol (ortholog) NW_004955481 9833918 9860202 + 102013415 AGCD01057119;GBCB01006042;XM_005402873;XM_013503334 XP_005402930;XP_013358788 MODEL 8873907 protein-coding LOC102019362 low affinity sodium-glucose cotransporter-like NW_004955455 6325614 6404676 - 102019362 AGCD01045787;AGCD01045788;AGCD01045789;AGCD01045790;AGCD01045791;AGCD01045792;GBDI01239871;XM_005396351;XM_005396352 XP_005396408;XP_005396409 MODEL 8737172 protein-coding Wrap53 WD repeat containing antisense to TP53 ENCODES a protein that exhibits histone binding (ortholog); identical protein binding (ortholog); protein carrier chaperone (ortholog); INVOLVED IN Cajal body organization (ortholog); positive regulation of DNA repair (ortholog); positive regulation of double-strand break repair (ortholog); ASSOCIATED WITH Autosomal Recessive Dyskeratosis Congenita (ortholog); autosomal recessive dyskeratosis congenita 3 (ortholog); Body Weight (ortholog); FOUND IN Cajal body (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955467 9225506 9240756 - 102006011 AGCD01051484;GBDK01319101;XM_005399465;XM_013522145 XP_005399522;XP_013377599 MODEL 8830201 protein-coding LOC102024522 glutamate-rich protein 1-like NW_004956601 108 3596 + 102024522 AGCD01079869;AGCD01079870;GBCE01024165;GBDK01393692;XM_005415206 XP_005415263 MODEL 39133066 snrna U6 U6 spliceosomal RNA 8837445 protein-coding LOC102007489 melanoma antigen preferentially expressed in tumors-like NW_004955608 370665 408600 - 102007489 AGCD01077038;AGCD01077039;AGCD01077040;XM_013510119 XP_013365573 MODEL 10170192 protein-coding LOC106146854 zinc finger protein 709-like NW_004955499 485668 507679 + 106146854 AGCD01063232;AGCD01063233;AGCD01063234;AGCD01063235;GBCQ01062838;XM_013505572 XP_013361026 MODEL 8805275 protein-coding LOC102019365 A-kinase anchor protein 5-like NW_004955408 12165200 12166481 + 102019365 AGCD01008329;XM_013508842 XP_013364296 MODEL 8919724 protein-coding Tmf1 TATA element modulatory factor 1 ENCODES a protein that exhibits nuclear androgen receptor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN acrosome assembly (ortholog); androgen receptor signaling pathway (ortholog); apoptotic process (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog); Prostatic Neoplasms (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955421 18810199 18837767 + 102013302 AGCD01022056;AGCD01022057;GBDF01004150;XM_005383813 XP_005383870 MODEL 8835388 protein-coding Phb2 prohibitin 2 ENCODES a protein that exhibits amide binding (ortholog); identical protein binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); B cell activation (ortholog); cell migration (ortholog); PARTICIPATES IN estrogen signaling pathway; mitochondria fusion pathway; tamoxifen pharmacodynamics pathway; ASSOCIATED WITH Brain Injuries (ortholog); developmental and epileptic encephalopathy 21 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN axon (ortholog); cell periphery (ortholog); cell surface (ortholog) NW_004955413 4557969 4563697 - 102010570 AGCD01013621;GBDJ01024188;XM_005378852 XP_005378909 MODEL 8756917 protein-coding LOC102017776 uncharacterized LOC102017776 NW_004955420 25040524 25045906 + 102017776 AGCD01021341;GBCQ01153372;XM_005383415 XP_005383472 MODEL 8726410 protein-coding LOC102024891 sodium-dependent multivitamin transporter NW_004955469 9182247 9194557 - 102024891 AGCD01052496;GBDF01222601;XM_005400472;XM_005400474;XM_013522641;XM_013522642 XP_005400529;XP_005400531;XP_013378095;XP_013378096 MODEL 8867892 protein-coding Bend3 BEN domain containing 3 ENCODES a protein that exhibits rDNA binding (ortholog); INVOLVED IN DNA methylation-dependent constitutive heterochromatin formation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of ATP metabolic process (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); FOUND IN heterochromatin (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955411 32346573 32384796 - 102008512 AGCD01012309;GBDF01161780;XM_005377836;XM_013510795;XM_013510796;XM_013510797 XP_005377893;XP_013366249;XP_013366250;XP_013366251 MODEL 9062592 protein-coding LOC102023569 caspase-1-like NW_004955412 7816895 7828651 - 102023569 AGCD01012705;GBBH01026203;XM_005378005;XM_013511164;XM_013511165 XP_005378062;XP_013366618;XP_013366619 MODEL 8981151 pseudo LOC102022476 protein sprouty homolog 4-like NW_004955460 12524558 12531163 - 102022476 AGCD01048659 MODEL 8823934 protein-coding Htra3 HtrA serine peptidase 3 ENCODES a protein that exhibits endopeptidase activity (ortholog); identical protein binding (ortholog); serine-type peptidase activity (ortholog); INVOLVED IN negative regulation of BMP signaling pathway (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); proteolysis (ortholog); ASSOCIATED WITH Mycoplasma pneumoniae pneumonia (ortholog) NW_004955514 2716448 2740590 - 102007687 AGCD01067086;AGCD01067087;GBBH01126439;GBDF01112316;XM_013506746 XP_013362200 MODEL 8895466 protein-coding Spa17 sperm autoantigenic protein 17 ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); external side of plasma membrane (ortholog) NW_004955412 25741369 25753681 + 102011188 AGCD01013173;GBDF01006464;XM_005378430 XP_005378487 MODEL 8709496 protein-coding LOC102020311 proton-coupled amino acid transporter 1 NW_004955408 5895042 5933710 + 102020311 AGCD01008159;GBDK01305420;XM_005376161;XM_005376162 XP_005376218;XP_005376219 MODEL 39133839 misc_rna Vault Vault RNA 8959534 protein-coding Tacr2 tachykinin receptor 2 ENCODES a protein that exhibits substance K receptor activity (ortholog); INVOLVED IN intestine smooth muscle contraction (ortholog); negative regulation of luteinizing hormone secretion (ortholog); operant conditioning (ortholog); ASSOCIATED WITH Abnormal Reflexes (ortholog); asthma (ortholog); bronchial disease (ortholog); FOUND IN plasma membrane (ortholog); sperm flagellum (ortholog); sperm head (ortholog) NW_004955437 21719246 21731963 + 102023195 AGCD01034919;AGCD01034920;GBDK01300429;XM_005390085;XM_005390086 XP_005390142;XP_005390143 MODEL 8748444 pseudo LOC102022868 ubiquitin-associated protein 2-like pseudogene NW_004955448 8332355 8337356 - 102022868 AGCD01041441;XR_262464 MODEL 10243333 ncrna LOC106149967 uncharacterized LOC106149967 NW_004955458 9925818 9930758 + 106149967 AGCD01047667;GBDF01005033;XR_001236461 MODEL 8909981 protein-coding LOC102022478 ATP synthase F(0) complex subunit C1, mitochondrial-like NW_004955464 4261213 4261795 - 102022478 AGCD01049986;XM_013521673 XP_013377127 MODEL 8859400 protein-coding LOC102012132 keratin, type II cytoskeletal 72 NW_004955547 2991156 3005189 - 102012132 AGCD01072303;XM_005411950 XP_005412007 MODEL 9060726 protein-coding LOC102009054 uncharacterized LOC102009054 NW_004955416 11049189 11057164 - 102009054 AGCD01017171;AGCD01017172;GBDF01186388;XM_005381692 XP_005381749 MODEL 8941068 pseudo LOC102021152 serine/threonine-protein kinase PRP4 homolog NW_004955428 20318156 20321687 - 102021152 AGCD01028108;XR_261306 MODEL 8843135 pseudo LOC102013361 ras-related protein Rab-33B pseudogene NW_004955402 34608545 34611065 - 102013361 AGCD01000866 MODEL 8749783 protein-coding LOC102015152 thyroid receptor-interacting protein 11-like NW_004955438 16476383 16482655 + 102015152 AGCD01035418;GBDF01213148;XM_013517162 XP_013372616 MODEL 10131119 ncrna LOC106149969 uncharacterized LOC106149969 NW_004955458 3721704 3723206 - 106149969 AGCD01047340;GBDF01065268;XR_001236465 MODEL 10193906 ncrna LOC106149128 uncharacterized LOC106149128 NW_004955437 9988217 9990477 - 106149128 AGCD01034555;GBDF01223481;XR_001235091 MODEL 8807962 protein-coding LOC102005721 RNA-binding protein 14 NW_004955422 18730230 18755479 - 102005721 AGCD01022960;GBBH01033313;XM_005384379;XM_005384380;XM_005384381;XM_005384383;XM_005384385;XM_013513904;XM_013513905;XM_013513906 XP_005384436;XP_005384437;XP_005384438;XP_005384440;XP_005384442;XP_013369358;XP_013369359;XP_013369360 MODEL 39133067 snrna U6 U6 spliceosomal RNA 8924544 protein-coding Tacr3 tachykinin receptor 3 ENCODES a protein that exhibits tachykinin receptor activity (ortholog); INVOLVED IN conditioned place preference (ortholog); drinking behavior (ortholog); positive regulation of blood pressure (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); amenorrhea (ortholog); FOUND IN axon terminus (ortholog); dendrite membrane (ortholog); dendritic spine head (ortholog) NW_004955496 5152134 5222565 + 102011678 AGCD01062346;AGCD01062347;AGCD01062348;GBDJ01006793;XM_005406230 XP_005406287 MODEL 9055945 protein-coding Wrap73 WD repeat containing, antisense to TP73 INVOLVED IN mitotic spindle assembly (ortholog); positive regulation of non-motile cilium assembly (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); Goldberg-Shprintzen syndrome (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog) NW_004955486 7992684 8006121 + 102026530 AGCD01059144;AGCD01059145;GBDF01119400;XM_005404146;XM_005404147 XP_005404203;XP_005404204 MODEL 8795757 pseudo LOC102017778 E3 ubiquitin-protein ligase RING2 pseudogene NW_004955421 538591 539793 - 102017778 AGCD01021566 MODEL 8780167 ncrna LOC102018125 uncharacterized LOC102018125 NW_004955523 895086 911354 - 102018125 AGCD01068485;GBCE01011399;XR_264635 MODEL 39133068 snrna U6 U6 spliceosomal RNA 10315948 ncrna LOC106149970 uncharacterized LOC106149970 NW_004955458 5549504 5550194 + 106149970 AGCD01047499;GBDF01112323;XR_001236466 MODEL 8904269 pseudo LOC102024892 ORM1-like protein 2 pseudogene NW_004955469 10787722 10788338 - 102024892 AGCD01052551 MODEL 8748204 protein-coding LOC102009806 inner nuclear membrane protein Man1 NW_004955458 11884435 11954683 + 102009806 AGCD01047763;AGCD01047764;GBBH01024965;GBCE01008629;XM_013520993 XP_013376447 MODEL 9034724 protein-coding Six5 SIX homeobox 5 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cell population proliferation (ortholog); lens development in camera-type eye (ortholog); Leydig cell proliferation (ortholog); ASSOCIATED WITH branchiootorenal syndrome (ortholog); branchiootorenal syndrome 2 (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955574 221635 225474 - 102016326 AGCD01075092;AGCD01075093;GBBH01185502;GBCE01137897;XM_013509516 XP_013364970 MODEL 39133841 misc_rna Vault Vault RNA 39133069 snrna U6 U6 spliceosomal RNA 9063101 protein-coding Prrt3 proline rich transmembrane protein 3 ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); Candidiasis, Familial, 9 (ortholog); myoclonic-atonic epilepsy (ortholog) NW_004955561 1430767 1437981 - 102014838 AGCD01073855;GBBH01213526;XM_005413055;XM_005413056;XM_005413057;XM_005413058 XP_005413112;XP_005413113;XP_005413114;XP_005413115 MODEL 9020795 protein-coding Tent4a terminal nucleotidyltransferase 4A ENCODES a protein that exhibits guanylyltransferase activity (ortholog); INVOLVED IN negative regulation of nuclear-transcribed mRNA poly(A) tail shortening (ortholog); positive regulation of 3'-UTR-mediated mRNA stabilization (ortholog); response to xenobiotic stimulus (ortholog); PARTICIPATES IN nucleotide excision repair pathway; FOUND IN Golgi apparatus (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955504 4443051 4476373 + 102015746 AGCD01064885;GBBH01207209;GBDI01113697;XM_005407069;XM_005407070 XP_005407126;XP_005407127 MODEL 39133837 misc_rna Vault Vault RNA 8811017 protein-coding Znf3 zinc finger protein 3 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955573 791242 800570 + 102003817 AGCD01075005;GBDF01124050;XM_005413757;XM_005413758;XM_005413759;XM_005413760;XM_005413761 XP_005413814;XP_005413815;XP_005413816;XP_005413817;XP_005413818 MODEL 8982303 pseudo LOC102007492 serine/threonine-protein kinase pim-2 pseudogene NW_004955769 5 841 - 102007492 AGCD01078313;XM_005415103 MODEL 8792405 pseudo LOC102009055 60S ribosomal protein L24 pseudogene NW_004955481 3914939 3917042 - 102009055 AGCD01056922 MODEL 8995786 ncrna LOC102013362 uncharacterized LOC102013362 NW_004955402 58255556 58259494 - 102013362 AGCD01001528;AGCD01001529;GBDF01117366;XR_259109 MODEL 39133070 snrna U6 U6 spliceosomal RNA 39132504 snrna U6 U6 spliceosomal RNA 39133835 misc_rna Vault Vault RNA 8704905 protein-coding LOC102028621 zinc finger and SCAN domain-containing protein 29-like NW_004955410 10591936 10671606 + 102028621 AGCD01010796;GBBH01182187;GBCB01089004;XM_005377267 XP_005377324 MODEL 8886414 protein-coding Znf300 zinc finger protein 300 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN nuclear body (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955415 3701434 3713097 + 102010473 AGCD01015949;GBCE01144737;XM_005380557;XM_005380559;XM_005380560;XM_013512398;XM_013512399;XM_013512400 XP_005380614;XP_005380616;XP_005380617;XP_013367852;XP_013367853;XP_013367854 MODEL 9000648 pseudo LOC102003239 coiled-coil domain-containing protein 90B, mitochondrial pseudogene NW_004955481 173004 173995 - 102003239 AGCD01056783 MODEL 8845878 ncrna LOC102020312 uncharacterized LOC102020312 NW_004955461 9328613 9331182 - 102020312 AGCD01048944;GBDF01159879;XR_263084 MODEL 39132505 snrna U6 U6 spliceosomal RNA 8888168 protein-coding LOC102013363 ubiquinol-cytochrome-c reductase complex assembly factor 3 ENCODES a protein that exhibits cardiolipin binding (ortholog); phosphatidic acid binding (ortholog); INVOLVED IN cristae formation (ortholog); mitochondrial electron transport, ubiquinol to cytochrome c (ortholog); mitochondrial respiratory chain complex III assembly (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); intellectual disability (ortholog); Larsen-like syndrome B3GAT3 type (ortholog); FOUND IN cytosol (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955599 540598 541643 - 102013363 AGCD01076657;GBCE01052198;XM_005414784 XP_005414841 MODEL 8861530 protein-coding Htra4 HtrA serine peptidase 4 ENCODES a protein that exhibits endopeptidase activity (ortholog); identical protein binding (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); hereditary spastic paraplegia 54 (ortholog); hypogonadotropic hypogonadism 2 with or without anosmia (ortholog) NW_004955463 14525798 14536948 + 102012072 AGCD01049912;GBCE01122540;GBDK01169288;XM_013521536 XP_013376990 MODEL 9006043 protein-coding Spata20 spermatogenesis associated 20 ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); oligoasthenoteratozoospermia (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN mitochondrion (ortholog) NW_004955451 11199115 11205978 - 102003716 AGCD01043342;GBDF01005759;XM_005394130 XP_005394187 MODEL 9064795 protein-coding S100z S100 calcium binding protein Z ENCODES a protein that exhibits calcium ion binding (ortholog); protein homodimerization activity (ortholog); ASSOCIATED WITH Hermansky-Pudlak syndrome 2 (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955425 24014039 24022842 - 102019932 AGCD01025872;GBCE01049545;XM_005386034;XM_005386036;XM_005386037;XM_013514756;XM_013514757;XM_013514758;XM_013514759;XM_013514760;XM_013514761;XM_013514762 XP_005386091;XP_005386093;XP_005386094;XP_013370210;XP_013370211;XP_013370212;XP_013370213;XP_013370214;XP_013370215;XP_013370216 MODEL 8936648 pseudo LOC102024525 60 kDa heat shock protein, mitochondrial-like NW_004955452 17463482 17488548 + 102024525 AGCD01044555;AGCD01044556 MODEL 8970189 protein-coding Ephx3 epoxide hydrolase 3 ENCODES a protein that exhibits epoxide hydrolase activity (ortholog); INVOLVED IN epoxide metabolic process (ortholog); ASSOCIATED WITH melanoma (ortholog); Stomach Neoplasms (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); membrane (ortholog) NW_004955495 7995979 8001423 + 102009853 AGCD01062174;GBDK01360091;XM_005406086;XM_013505126;XM_013505127 XP_005406143;XP_013360580;XP_013360581 MODEL 8782539 protein-coding Vav1 vav guanine nucleotide exchange factor 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); phosphorylation-dependent protein binding (ortholog); phosphotyrosine residue binding (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); immune response (ortholog); immune response-regulating cell surface receptor signaling pathway (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); autistic disorder (ortholog); endometriosis (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog) NW_004955495 2697508 2755468 - 102030545 AGCD01061793;AGCD01061794;AGCD01061795;AGCD01061796;AGCD01061797;AGCD01061798;AGCD01061799;GBDJ01387443;XM_005405685;XM_005405689 XP_005405742;XP_005405746 MODEL 8719849 protein-coding LOC102009819 splicing factor, arginine/serine-rich 19-like NW_004955413 3207197 3209122 - 102009819 AGCD01013568;GBDI01085078;XM_005378751;XM_005378752;XM_013511272;XR_001232932 XP_005378808;XP_005378809;XP_013366726 MODEL 9048317 protein-coding Sgms1 sphingomyelin synthase 1 ENCODES a protein that exhibits ceramide cholinephosphotransferase activity (ortholog); ceramide phosphoethanolamine synthase activity (ortholog); sphingomyelin synthase activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to tumor necrosis factor (ortholog); ceramide biosynthetic process (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH Cockayne syndrome B (ortholog); megacolon (ortholog); pulmonary edema (ortholog); FOUND IN Golgi membrane (ortholog); Golgi trans cisterna (ortholog) NW_004955425 5507905 5819357 + 102030096 AGCD01025350;AGCD01025351;AGCD01025352;AGCD01025353;AGCD01025354;AGCD01025355;AGCD01025356;AGCD01025357;GBDI01187376;XM_005385896;XM_005385897;XM_013514835;XM_013514836;XM_013514837;XM_013514838;XM_013514839 XP_005385953;XP_005385954;XP_013370289;XP_013370290;XP_013370291;XP_013370292;XP_013370293 MODEL 9002490 ncrna LOC102019366 uncharacterized LOC102019366 NW_004955460 4440981 4449248 + 102019366 AGCD01048434;AGCD01048435;GBDF01155457;XR_263027 MODEL 8941876 protein-coding Prrt4 proline rich transmembrane protein 4 ASSOCIATED WITH COVID-19 (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955479 9355216 9364982 - 102022918 AGCD01056461;AGCD01056462;GBDI01309642;XM_013503258 XP_013358712 MODEL 8795766 protein-coding Rbm43 RNA binding motif protein 43 NW_004955440 16836877 16843414 - 102018986 AGCD01036533;GBBH01065800;XM_013517442 XP_013372896 MODEL 8780668 ncrna LOC102006062 uncharacterized LOC102006062 NW_004955432 9620240 9642499 + 102006062 AGCD01030909;XR_261520 MODEL 8781536 protein-coding Tacstd2 tumor associated calcium signal transducer 2 INVOLVED IN negative regulation of branching involved in ureteric bud morphogenesis (ortholog); negative regulation of cell motility (ortholog); negative regulation of epithelial cell migration (ortholog); ASSOCIATED WITH corneal dystrophy (ortholog); endometriosis (ortholog); gelatinous drop-like corneal dystrophy (ortholog); FOUND IN basal plasma membrane (ortholog); extracellular space (ortholog); lateral plasma membrane (ortholog) NW_004955464 1282989 1284785 + 102017552 AGCD01049946;GBCQ01007569;XM_005398491 XP_005398548 MODEL 8949334 ncrna LOC102009056 uncharacterized LOC102009056 NW_004955418 15612269 15614198 - 102009056 AGCD01019108;GBDF01097946;XR_260557 MODEL 8991758 protein-coding Klc2 kinesin light chain 2 ENCODES a protein that exhibits kinesin binding (ortholog); INVOLVED IN axo-dendritic transport (ortholog); lysosome localization (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN ciliary rootlet (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955422 19047942 19057153 - 102019403 AGCD01022973;GBDJ01182843;XM_005384430;XM_013514008;XM_013514009 XP_005384487;XP_013369462;XP_013369463 MODEL 8799799 protein-coding LOC102007175 translationally-controlled tumor protein-like NW_004957362 28 1515 - 102007175 AGCD01080758;XM_005415228 XP_005415285 MODEL 8905162 protein-coding LOC102017785 60S acidic ribosomal protein P0-like NW_004955494 2559510 2560550 + 102017785 AGCD01061440;GBDF01135760;XM_013504925 XP_013360379 MODEL 8837936 protein-coding Sgms2 sphingomyelin synthase 2 ENCODES a protein that exhibits ceramide cholinephosphotransferase activity (ortholog); ceramide phosphoethanolamine synthase activity (ortholog); sphingomyelin synthase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); ceramide phosphoethanolamine biosynthetic process (ortholog); regulation of bone mineralization (ortholog); ASSOCIATED WITH 3-Hydroxyacyl-CoA Dehydrogenase Deficiency (ortholog); calvarial doughnut lesions with bone fragility (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); nucleoplasm (ortholog) NW_004955496 1909347 1955004 - 102004618 AGCD01062261;GBCE01007641;XM_005406206;XM_005406207;XM_005406208;XM_005406209;XM_005406210;XM_005406211;XM_005406212;XM_013505416;XM_013505417 XP_005406263;XP_005406264;XP_005406265;XP_005406266;XP_005406267;XP_005406268;XP_005406269;XP_013360870;XP_013360871 MODEL 39133428 snrna U4 U4 spliceosomal RNA 8969409 protein-coding Krt71 keratin 71 INVOLVED IN hair follicle morphogenesis (ortholog); intermediate filament organization (ortholog); ASSOCIATED WITH alopecia (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN keratin filament (ortholog) NW_004955547 2953853 2962711 - 102011480 AGCD01072302;GBDF01236389;XM_005411948 XP_005412005 MODEL 8761013 protein-coding LOC102028623 olfactory receptor 8B3-like NW_004955412 25172675 25195852 - 102028623 AGCD01013138;AGCD01013139;AGCD01013140;XM_005378649;XM_013511249 XP_005378706;XP_013366703 MODEL 9020185 protein-coding Six6 SIX homeobox 6 ENCODES a protein that exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); ASSOCIATED WITH Branchiootic Syndrome 3 (ortholog); cataract (ortholog); cornea plana (ortholog) NW_004955466 9120227 9122109 - 102020896 AGCD01051028;XM_013521887 XP_013377341 MODEL 8789174 pseudo LOC102008653 dual specificity mitogen-activated protein kinase kinase 1 pseudogene NW_004955515 3622654 3623565 - 102008653 AGCD01067294 MODEL 39133429 snrna U4 U4 spliceosomal RNA 8807142 protein-coding Necap1 NECAP endocytosis associated 1 INVOLVED IN endocytosis (ortholog); presynaptic endocytosis (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN clathrin vesicle coat (ortholog); clathrin-coated pit (ortholog); presynapse (ortholog) NW_004955413 6737785 6751672 + 102029166 AGCD01013773;GBDF01015578;XM_005378916 XP_005378973 MODEL 8865972 protein-coding Tmie transmembrane inner ear INVOLVED IN inner ear morphogenesis (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 6 (ortholog); genetic disease (ortholog) NW_004955420 25428542 25435701 - 102021131 AGCD01021358;GBDJ01061219;XM_005383427 XP_005383484 MODEL 8935190 pseudo LOC102007494 glycoprotein endo-alpha-1,2-mannosidase pseudogene NW_004955403 21715243 21717598 - 102007494 AGCD01002203;XM_005373891 MODEL 8868704 pseudo LOC102008654 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 pseudogene NW_004955516 2082890 2085194 + 102008654 AGCD01067447 MODEL 39133430 snrna U4 U4 spliceosomal RNA 8780190 ncrna LOC102019369 uncharacterized LOC102019369 NW_004955463 5190976 5203856 + 102019369 AGCD01049634;AGCD01049635;AGCD01049636;AGCD01049637;GBDF01125889;XR_263149;XR_263150 MODEL 8816765 protein-coding Ska1 spindle and kinetochore associated complex subunit 1 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); establishment of meiotic spindle orientation (ortholog); metaphase chromosome alignment (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hepatocellular carcinoma (ortholog); intellectual disability (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955402 35382531 35395787 + 102018668 AGCD01000884;GBDF01306695;XM_005372927;XM_005372928 XP_005372984;XP_005372985 MODEL 8731647 protein-coding Vav2 vav guanine nucleotide exchange factor 2 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); phosphotyrosine residue binding (ortholog); INVOLVED IN cell migration (ortholog); cell projection assembly (ortholog); lamellipodium assembly (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; erythropoietin signaling pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); Kleefstra syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog) NW_004955513 2985246 3121324 - 102022003 AGCD01066892;AGCD01066893;AGCD01066894;GBDI01121070;GBDK01142013;XM_005408459;XM_005408460 XP_005408516;XP_005408517 MODEL 39132507 snrna U6 U6 spliceosomal RNA 10317829 protein-coding Ska2 spindle and kinetochore associated complex subunit 2 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); establishment of meiotic spindle orientation (ortholog); mitotic metaphase chromosome alignment (ortholog); ASSOCIATED WITH Joubert syndrome 1 (ortholog); mulibrey nanism (ortholog); FOUND IN kinetochore (ortholog); meiotic spindle (ortholog); outer kinetochore (ortholog) NW_004955451 3839978 3862200 + 106149657 AGCD01043075;AGCD01043076;AGCD01043077;GBDF01087363;XM_013519227 XP_013374681 MODEL 8865746 protein-coding Depdc5 DEP domain containing 5, GATOR1 subcomplex subunit ENCODES a protein that exhibits protein-containing complex binding (ortholog); small GTPase binding (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); negative regulation of TORC1 signaling (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign epilepsy with centrotemporal spikes (ortholog); benign familial infantile seizures 6 (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytosol (ortholog); GATOR1 complex (ortholog) NW_004955455 5881631 6005514 + 102016020 AGCD01045758;AGCD01045759;AGCD01045760;AGCD01045761;AGCD01045762;AGCD01045763;GBDF01188888;XM_005396337;XM_005396338;XM_013520345;XM_013520346;XM_013520347;XM_013520348;XM_013520349;XM_013520350;XM_013520351;XM_013520352;XM_013520353;XM_013520354;XM_013520355;XM_013520356;XM_013520357 XP_005396394;XP_005396395;XP_013375799;XP_013375800;XP_013375801;XP_013375802;XP_013375803;XP_013375804;XP_013375805;XP_013375806;XP_013375807;XP_013375808;XP_013375809;XP_013375810;XP_013375811 MODEL 8853375 pseudo LOC102007176 uncharacterized LOC102007176 NW_004955403 21438343 21464628 - 102007176 AGCD01002196 MODEL 8765147 ncrna LOC102017793 uncharacterized LOC102017793 NW_004955499 5632515 5635424 - 102017793 AGCD01063523;GBCQ01045824;XR_264219 MODEL 8785655 protein-coding Klc3 kinesin light chain 3 ENCODES a protein that exhibits kinesin binding (ortholog); microtubule binding (ortholog); INVOLVED IN axo-dendritic transport (ortholog); sperm mitochondrial sheath assembly (ortholog); spermatid development (ortholog); ASSOCIATED WITH cerebrooculofacioskeletal syndrome 2 (ortholog); xeroderma pigmentosum (ortholog); xeroderma pigmentosum group D (ortholog); FOUND IN ciliary rootlet (ortholog); cytoplasm (ortholog); mitochondrion (ortholog) NW_004955555 2346241 2355529 + 102010420 AGCD01073148;GBCE01169285;XM_005412517;XM_005412518;XM_005412519;XM_005412520;XM_013508702;XM_013508703;XM_013508704 XP_005412574;XP_005412575;XP_005412576;XP_005412577;XP_013364156;XP_013364157;XP_013364158 MODEL 8920114 protein-coding Ppp1cc protein phosphatase 1 catalytic subunit gamma ENCODES a protein that exhibits lamin binding (ortholog); phosphatase activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN blastocyst development (ortholog); circadian regulation of gene expression (ortholog); entrainment of circadian clock by photoperiod (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; dopamine signaling pathway; glycogen biosynthetic pathway; ASSOCIATED WITH congestive heart failure (ortholog); Ovarian Neoplasms (ortholog); Spinal Cord Injuries (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); dendritic spine (ortholog) NW_004955482 7582605 7605340 - 102026527 AGCD01057477;GBDF01006573;XM_005403165 XP_005403222 MODEL 8787459 protein-coding Spata21 spermatogenesis associated 21 ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Liver Neoplasms (ortholog); polycystic ovary syndrome (ortholog) NW_004955527 1903607 1939020 + 102028460 AGCD01069420;GBBH01023649;XM_013507378;XM_013507379;XM_013507380;XM_013507381;XM_013507382;XM_013507383;XM_013507384 XP_013362832;XP_013362833;XP_013362834;XP_013362835;XP_013362836;XP_013362837;XP_013362838 MODEL 8852833 protein-coding Tent4b terminal nucleotidyltransferase 4B ENCODES a protein that exhibits guanylyltransferase activity (ortholog); poly(A) RNA polymerase activity (ortholog); telomerase RNA binding (ortholog); INVOLVED IN carbohydrate homeostasis (ortholog); histone mRNA catabolic process (ortholog); miRNA catabolic process (ortholog); ASSOCIATED WITH Chromosome 16q12 Duplication Syndrome (ortholog); nephronophthisis 14 (ortholog); Townes-Brocks syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955433 8288432 8347347 + 102014936 AGCD01031590;AGCD01031591;GBCE01037318;GBDI01292921;XM_005388265;XM_005388268 XP_005388322;XP_005388325 MODEL 10200183 ncrna LOC106149129 uncharacterized LOC106149129 NW_004955437 21787228 21788229 - 106149129 AGCD01034922;GBDF01010374;XR_001235093 MODEL 8769366 protein-coding Phc1 polyhomeotic homolog 1 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); cellular response to retinoic acid (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH dilated cardiomyopathy (ortholog); Germ Cell and Embryonal Neoplasms (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955413 6156934 6176460 - 102023793 AGCD01013710;GBBH01033996;XM_005378897 XP_005378954 MODEL 8807769 protein-coding LOC102023571 histone H2B type 2-E NW_004955413 865234 866657 + 102023571 AGCD01013492;XM_005378713 XP_005378770 MODEL 39133071 snrna U6 U6 spliceosomal RNA 8806112 ncrna LOC102023918 uncharacterized LOC102023918 NW_004955422 3341196 3344154 - 102023918 AGCD01022507;GBDF01113585;XR_260850 MODEL 8804137 protein-coding Krt76 keratin 76 INVOLVED IN epidermis development (ortholog); pigmentation (ortholog); sebaceous gland development (ortholog) NW_004955458 74368 82778 - 102007308 AGCD01047106;XM_005397127;XM_013520810 XP_005397184;XP_013376264 MODEL 8736565 pseudo LOC102017795 5-azacytidine-induced protein 2 pseudogene NW_004955503 1186824 1187899 + 102017795 AGCD01064558 MODEL 8962398 protein-coding Wrn WRN RecQ like helicase ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); 3'-5' exonuclease activity (ortholog); 3'-flap-structured DNA binding (ortholog); INVOLVED IN base-excision repair (ortholog); cellular response to gamma radiation (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH breast cancer (ortholog); coronary artery disease (ortholog); diffuse scleroderma (ortholog); FOUND IN centrosome (ortholog); chromosome, telomeric region (ortholog); nuclear speck (ortholog) NW_004955463 7495243 7633532 + 102030614 AGCD01049734;AGCD01049735;AGCD01049736;AGCD01049737;AGCD01049738;AGCD01049739;AGCD01049740;AGCD01049741;GBDF01144959;XM_005398387;XM_005398388;XM_005398389;XM_005398390;XM_013521530 XP_005398444;XP_005398445;XP_005398446;XP_005398447;XP_013376984 MODEL 8991079 protein-coding Lmo2 LIM domain only 2 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); chromatin binding (ortholog); DNA binding (ortholog); INVOLVED IN embryonic hemopoiesis (ortholog); negative regulation of erythrocyte differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN nucleus (ortholog); protein-containing complex (ortholog); transcription regulator complex (ortholog) NW_004955422 12354865 12362026 + 102019401 AGCD01022791;GBBH01063389;GBDF01194295;XM_005384152 XP_005384209 MODEL 9052350 pseudo LOC102024894 olfactory receptor 52E4-like NW_004955414 20805630 20806574 + 102024894 AGCD01015389 MODEL 10143383 pseudo LOC106149971 spindle and kinetochore-associated protein 3 pseudogene NW_004955458 4249312 4249690 - 106149971 AGCD01047394 MODEL 8971322 protein-coding Necap2 NECAP endocytosis associated 2 ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); prostate cancer (ortholog); FOUND IN clathrin vesicle coat (ortholog) NW_004955527 1885708 1900424 - 102026668 AGCD01069419;AGCD01069420;GBDI01176012;XM_005409827 XP_005409884 MODEL 8856628 protein-coding Rbm44 RNA binding motif protein 44 ENCODES a protein that exhibits protein homodimerization activity (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN cytoplasm (ortholog); intercellular bridge (ortholog) NW_004955542 2573648 2620240 - 102030570 AGCD01071526;AGCD01071527;GBDF01048408;XM_005411204;XM_005411205;XM_013508022 XP_005411261;XP_005411262;XP_013363476 MODEL 39133431 snrna U4 U4 spliceosomal RNA 8817519 protein-coding LOC102023919 olfactory receptor-like protein OLF3 NW_004955491 303421 304356 + 102023919 AGCD01060329;XM_005404879 XP_005404936 MODEL 8777636 protein-coding LOC102012139 gonadotropin-releasing hormone receptor NW_004955447 5179231 5190335 + 102012139 AGCD01040748;XM_005392835;XM_005392836 XP_005392892;XP_005392893 MODEL 10093315 ncrna LOC106146855 uncharacterized LOC106146855 NW_004955499 478471 483397 + 106146855 AGCD01063232;GBDJ01064239;XR_001231455 MODEL 8947478 protein-coding LOC102013365 vomeronasal type-1 receptor 4-like NW_004955609 69961 70845 - 102013365 AGCD01077050;XM_005414936 XP_005414993 MODEL 8805934 protein-coding LOC102021156 olfactory receptor 8J2-like NW_004955511 5102711 5103658 + 102021156 AGCD01066549;XM_005408084 XP_005408141 MODEL 8867928 protein-coding LOC102009058 L-amino-acid oxidase-like NW_004955418 29930239 29946380 - 102009058 AGCD01019491;AGCD01019492;XM_005382362 XP_005382419 MODEL 8920491 protein-coding LOC102015156 cytochrome c oxidase assembly protein COX14 INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); ASSOCIATED WITH mitochondrial complex IV deficiency nuclear type 10 (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955547 690167 690777 + 102015156 AGCD01072172;GBCB01000539;XM_005411876 XP_005411933 MODEL 10325970 ncrna LOC106150338 uncharacterized LOC106150338 NW_004955472 6750149 6778663 - 106150338 AGCD01053610;AGCD01053611;XR_001237088 MODEL 10060525 ncrna LOC106146856 uncharacterized LOC106146856 NW_004955499 7605614 7623392 - 106146856 AGCD01063594;AGCD01063595;XR_001231456 MODEL 8808177 protein-coding LOC102012140 olfactory receptor 2G3-like NW_004955576 1369561 1370502 - 102012140 AGCD01075374;XM_005413955 XP_005414012 MODEL 9004565 pseudo LOC102009061 liver carboxylesterase 2-like NW_004955484 9676099 9679287 - 102009061 AGCD01058425 MODEL 10278186 ncrna LOC106146857 uncharacterized LOC106146857 NW_004955499 5186406 5195719 - 106146857 AGCD01063510;XR_001231457 MODEL 10108931 ncrna LOC106150339 uncharacterized LOC106150339 NW_004955472 7277848 7298260 + 106150339 AGCD01053618;GBDF01145537;XR_001237096 MODEL 8926439 protein-coding Spata22 spermatogenesis associated 22 INVOLVED IN fertilization (ortholog); gamete generation (ortholog); homologous chromosome pairing at meiosis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal dominant mutilating palmoplantar keratoderma with periorificial keratotic plaques (ortholog); Canavan disease (ortholog); FOUND IN chromosome (ortholog) NW_004955467 13304314 13325228 + 102023134 AGCD01051670;AGCD01051671;GBDK01096055;XM_005399726;XM_005399727 XP_005399783;XP_005399784 MODEL 8866803 protein-coding Tada1 transcriptional adaptor 1 ENCODES a protein that exhibits transcription coactivator activity (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (ortholog); focal adhesion (ortholog); nucleoplasm (ortholog) NW_004955462 10057468 10073871 + 102028065 AGCD01049350;AGCD01049351;GBDF01082667;XM_005398237;XM_013521452 XP_005398294;XP_013376906 MODEL 8806767 protein-coding LOC102016932 uncharacterized LOC102016932 NW_004955500 6552360 6555261 + 102016932 AGCD01063885;GBCQ01031401;XM_013505725 XP_013361179 MODEL 9065199 pseudo LOC102019372 trifunctional enzyme subunit alpha, mitochondrial pseudogene NW_004955411 23447126 23462571 - 102019372 AGCD01012108 MODEL 9003446 protein-coding LOC102024531 PC-esterase domain-containing protein 1A-like NW_004955457 2923724 2925741 - 102024531 AGCD01046755;AGCD01046756;GBDF01209626;XM_013520735 XP_013376189 MODEL 8927754 pseudo LOC102024895 heterogeneous nuclear ribonucleoprotein A3 pseudogene NW_004955470 2678975 2680570 + 102024895 AGCD01052680 MODEL 8737136 pseudo LOC102005723 putative olfactory receptor 9A1 NW_004955494 1730333 1731273 + 102005723 AGCD01061422 MODEL 9011859 protein-coding Vav3 vav guanine nucleotide exchange factor 3 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); cell migration (ortholog); cell projection assembly (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); hypertension (ortholog); Hyperventilation (ortholog); FOUND IN cytoplasm (ortholog); immunological synapse (ortholog); plasma membrane (ortholog) NW_004955435 11326910 11599043 - 102017155 AGCD01033113;AGCD01033114;AGCD01033115;AGCD01033116;GBCE01181515;XM_013516527 XP_013371981 MODEL 9027483 protein-coding LOC102019383 olfactory receptor 51S1 ASSOCIATED WITH delta beta-thalassemia (ortholog) NW_004955414 20464355 20465326 - 102019383 AGCD01015375;XM_005380058 XP_005380115 MODEL 8731910 protein-coding Ephx4 epoxide hydrolase 4 ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); severe congenital neutropenia 2 (ortholog) NW_004955423 2389745 2425036 - 102026760 AGCD01023472;GBDJ01093449;XM_005385060 XP_005385117 MODEL 8972171 protein-coding Unc50 unc-50 inner nuclear membrane RNA binding protein ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN protein localization to cell surface (ortholog); ASSOCIATED WITH fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN Golgi apparatus (ortholog); nuclear inner membrane (ortholog) NW_004955470 5050982 5059890 + 102005924 AGCD01052743;GBDF01048518;XM_005400723;XM_005400724;XM_013522733;XM_013522734;XM_013522735 XP_005400780;XP_005400781;XP_013378187;XP_013378188;XP_013378189 MODEL 8729757 protein-coding LOC102018133 keratin, type II microfibrillar, component 7C-like NW_004955547 2600470 2610128 - 102018133 AGCD01072286;AGCD01072287;XM_013508445 XP_013363899 MODEL 8926821 protein-coding LOC102015158 carcinoembryonic antigen-related cell adhesion molecule 21-like NW_004955555 376798 410353 + 102015158 AGCD01073026;AGCD01073027;AGCD01073028;AGCD01073029;GBCQ01010927;XM_013508672 XP_013364126 MODEL 8804119 ncrna LOC102005727 uncharacterized LOC102005727 NW_004955424 19528323 19533322 + 102005727 AGCD01024829;GBDI01309346;XR_261083 MODEL 8723945 protein-coding Prrx1 paired related homeobox 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN artery morphogenesis (ortholog); cartilage development (ortholog); embryonic cranial skeleton morphogenesis (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); agnathia-otocephaly complex (ortholog); atrial fibrillation (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955462 6919905 6991733 + 102006989 AGCD01049292;AGCD01049293;GBCE01001518;XM_005398172;XM_005398173 XP_005398229;XP_005398230 MODEL 8853277 protein-coding Tmigd1 transmembrane and immunoglobulin domain containing 1 ENCODES a protein that exhibits cell adhesion mediator activity (ortholog); cell-cell adhesion mediator activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN brush border assembly (ortholog); cell aggregation (ortholog); cell migration (ortholog); ASSOCIATED WITH neurofibromatosis 1 (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955481 2977245 3009724 + 102004600 AGCD01056891;GBDK01145333;XM_005402660;XM_013503461 XP_005402717;XP_013358915 MODEL 8749301 protein-coding LOC102022480 N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase NW_004955465 3703513 3740356 - 102022480 AGCD01050388;AGCD01050389;GBBH01089251;XM_005398839 XP_005398896 MODEL 8723910 pseudo LOC102003240 bridging integrator 2-like NW_004955418 22080594 22081909 - 102003240 AGCD01019279 MODEL 8799317 ncrna LOC102020314 uncharacterized LOC102020314 NW_004955463 5307223 5319278 + 102020314 AGCD01049638;GBDF01149770;XR_263152 MODEL 10286396 ncrna LOC106146858 uncharacterized LOC106146858 NW_004955499 5132341 5133193 - 106146858 AGCD01063508;GBCQ01173804;XR_001231458 MODEL 10122181 ncrna LOC106150340 uncharacterized LOC106150340 NW_004955472 1973576 1976345 - 106150340 AGCD01053425;GBDF01118125;XR_001237097 MODEL 9032890 protein-coding Htt huntingtin ENCODES a protein that exhibits beta-tubulin binding (ortholog); diazepam binding (ortholog); dynactin binding (ortholog); INVOLVED IN anatomical structure morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); associative learning (ortholog); PARTICIPATES IN Huntington's disease pathway; ASSOCIATED WITH Cadmium Poisoning (ortholog); cerebral palsy (ortholog); cherubism (ortholog); FOUND IN autophagosome (ortholog); axon (ortholog); centriole (ortholog) NW_004955514 1906189 2042357 + 102006381 AGCD01067067;AGCD01067068;AGCD01067069;AGCD01067070;AGCD01067071;GBBH01187582;GBCE01064737;XM_013506814;XM_013506815 XP_013362268;XP_013362269 MODEL 10275300 ncrna LOC106149972 uncharacterized LOC106149972 NW_004955458 4265470 4266042 + 106149972 AGCD01047395;GBDF01279215;XR_001236472 MODEL 8948625 protein-coding Bend4 BEN domain containing 4 ASSOCIATED WITH ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3 (ortholog); lung non-small cell carcinoma (ortholog) NW_004955443 5593351 5613569 + 102009230 AGCD01038242;GBBH01170689;XM_005391922 XP_005391979 MODEL 8975375 protein-coding S1pr1 sphingosine-1-phosphate receptor 1 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); G protein-coupled receptor binding (ortholog); sphingolipid binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); angiogenesis (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphai family; platelet-derived growth factor signaling pathway; sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Cardiomegaly (ortholog); FOUND IN external side of plasma membrane (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955435 5880266 5882823 + 102008975 AGCD01032903;GBDI01225054;XM_013516565 XP_013372019 MODEL 8734471 pseudo LOC102020315 elongation factor 1-beta pseudogene NW_004955410 18673488 18701633 - 102020315 AGCD01011009;AGCD01011010 MODEL 8838990 protein-coding LOC102013366 olfactory receptor 2L13-like NW_004955619 101327 102265 + 102013366 AGCD01077337;XM_005415005 XP_005415062 MODEL 8824474 protein-coding Spaca1 sperm acrosome associated 1 INVOLVED IN acrosome assembly (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH spermatogenic failure 85 (ortholog); FOUND IN acrosomal membrane (ortholog); acrosomal vesicle (ortholog) NW_004955411 14946324 14960901 + 102030397 AGCD01011926;AGCD01011927;GBDF01043494;XM_005377737 XP_005377794 MODEL 10222185 ncrna LOC106150341 uncharacterized LOC106150341 NW_004955472 12842352 12849040 - 106150341 AGCD01053821;GBDI01202999;XR_001237099;XR_001237100 MODEL 9045929 protein-coding Tent5a terminal nucleotidyltransferase 5A ENCODES a protein that exhibits poly(A) RNA polymerase activity (ortholog); INVOLVED IN positive regulation of bone mineralization (ortholog); positive regulation of osteoblast differentiation (ortholog); regulation of ossification (ortholog); ASSOCIATED WITH esophageal atresia (ortholog); lung non-small cell carcinoma (ortholog); osteoarthritis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955411 9695149 9701463 - 102009261 AGCD01011764;GBCE01137051;GBDI01218110;XM_005377679 XP_005377736 MODEL 10124296 ncrna LOC106149973 uncharacterized LOC106149973 NW_004955458 10983507 10997983 - 106149973 AGCD01047711;XR_001236473 MODEL 8899518 pseudo LOC102023573 40S ribosomal protein SA pseudogene NW_004955468 5412271 5413102 - 102023573 AGCD01051969 MODEL 8938363 protein-coding Vax1 ventral anterior homeobox 1 ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN astrocyte differentiation (ortholog); axon guidance (ortholog); brain development (ortholog); ASSOCIATED WITH microphthalmia (ortholog); syndromic microphthalmia 11 (ortholog); FOUND IN nucleus (ortholog) NW_004955431 21853636 21857547 - 102019725 AGCD01030503;AGCD01030504;XM_005387908 XP_005387965 MODEL 8942369 protein-coding LOC102019384 uncharacterized LOC102019384 NW_004955470 548231 553573 - 102019384 AGCD01052614;XM_013522687 XP_013378141 MODEL 10085714 ncrna LOC106150342 uncharacterized LOC106150342 NW_004955472 2673390 2679087 + 106150342 AGCD01053482;AGCD01053483;GBDI01215196;XR_001237103 MODEL 8712674 protein-coding LOC102012144 cytochrome b5 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN response to cadmium ion (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); chromosome 18q deletion syndrome (ortholog); Congenital Methemoglobinemia (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955402 57701931 57739163 - 102012144 AGCD01001508;AGCD01001509;GBDK01022341;XM_005373076 XP_005373133 MODEL 8876337 protein-coding Krt77 keratin 77 FOUND IN cornified envelope (ortholog); cytoskeleton (ortholog) NW_004955458 37218 49069 - 102006636 AGCD01047105;GBCC01000798;XM_005397125 XP_005397182 MODEL 8767644 ncrna LOC102005728 uncharacterized LOC102005728 NW_004955424 27059476 27098465 + 102005728 AGCD01025100;GBDF01207365;XR_261110;XR_261111 MODEL 8913532 protein-coding Rbm46 RNA binding motif protein 46 ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN cell cycle switching, mitotic to meiotic cell cycle (ortholog); female meiotic nuclear division (ortholog); male meiotic nuclear division (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955471 12096400 12167536 - 102016372 AGCD01053272;AGCD01053273;AGCD01053274;GBDF01049866;XM_013522862 XP_013378316 MODEL 39132508 snrna U6 U6 spliceosomal RNA 8734565 protein-coding Prss12 serine protease 12 ENCODES a protein that exhibits peptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN exocytosis (ortholog); proteolysis (ortholog); zymogen activation (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 1 (ortholog); intellectual disability (ortholog); long QT syndrome (ortholog); FOUND IN axon (ortholog); cytoplasmic vesicle (ortholog); dendrite (ortholog) NW_004955428 21574947 21644909 + 102023723 AGCD01028144;AGCD01028145;GBBH01208476;GBDF01194309;XM_013515266 XP_013370720 MODEL 8700555 protein-coding LOC102012146 3-alpha-hydroxysteroid sulfotransferase-like NW_004955609 372015 408109 - 102012146 AGCD01077059;AGCD01077060;GBDI01156067;XM_005414932 XP_005414989 MODEL 8832637 ncrna LOC102024533 uncharacterized LOC102024533 NW_004955408 35437922 35476125 - 102024533 AGCD01008943;AGCD01008944;AGCD01008945;AGCD01008946;GBDJ01064858;XR_259733 MODEL 8979794 protein-coding LOC102009822 TRIO and F-actin-binding protein NW_004955413 24125506 24147260 + 102009822 AGCD01014348;AGCD01014349;GBDI01083298;GBDK01078508;XM_005379226 XP_005379283 MODEL 10282263 ncrna LOC106146860 uncharacterized LOC106146860 NW_004955499 612981 619709 + 106146860 AGCD01063253;AGCD01063254;GBBH01133812;XR_001231459;XR_001231460;XR_001231461;XR_001231462;XR_001231463 MODEL 8862642 protein-coding LOC102022871 zinc finger protein 805-like NW_004955584 81415 98349 - 102022871 AGCD01075917;AGCD01075918;GBDJ01006378;XM_013509842 XP_013365296 MODEL 126903046 protein-coding RBM46 RNA binding motif protein 46 8858677 ncrna LOC102012147 uncharacterized LOC102012147 NW_004955652 44834 52840 - 102012147 AGCD01077823;AGCD01077824;GBBH01127077;XR_265180 MODEL 8791757 ncrna LOC102008655 uncharacterized LOC102008655 NW_004955434 11901814 11906490 - 102008655 AGCD01032382;GBDF01223017;XR_001234777 MODEL 8861722 protein-coding LOC102018136 myeloid cell surface antigen CD33-like NW_004955559 971745 982328 - 102018136 AGCD01073623;AGCD01073624;AGCD01073625;GBDJ01063533;XM_013508946 XP_013364400 MODEL 8811387 protein-coding LOC102017797 uncharacterized LOC102017797 NW_004955427 10150908 10170576 - 102017797 AGCD01027128;AGCD01027129;AGCD01027130;AGCD01027131;AGCD01027132;AGCD01027133;GBDF01207976;XM_013515052 XP_013370506 MODEL 8717453 protein-coding Unc5a unc-5 netrin receptor A ENCODES a protein that exhibits netrin receptor activity (ortholog); INVOLVED IN anterior/posterior axon guidance (ortholog); axon guidance (ortholog); netrin-activated signaling pathway (ortholog); ASSOCIATED WITH Chromosome 5, Trisomy 5q (ortholog); Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN neuron projection membrane (ortholog); neuronal cell body membrane (ortholog); plasma membrane (ortholog) NW_004955408 29071812 29132744 + 102017746 AGCD01008738;GBBH01004842;XM_005376402;XM_005376404;XM_005376405 XP_005376459;XP_005376461;XP_005376462 MODEL 8951091 protein-coding LOC102023577 olfactory receptor 52E1-like NW_004955414 20762285 20763223 - 102023577 AGCD01015389;XM_005380066 XP_005380123 MODEL 9030055 pseudo LOC102017800 heterogeneous nuclear ribonucleoproteins A2/B1 pseudogene NW_004955428 18182006 18184385 - 102017800 AGCD01028058 MODEL 8854497 protein-coding Ska3 spindle and kinetochore associated complex subunit 3 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); establishment of meiotic spindle orientation (ortholog); metaphase chromosome alignment (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); kinetochore (ortholog) NW_004955497 1874911 1896588 - 102011217 AGCD01062479;GBBH01161825;GBDF01049973;XM_013505507 XP_013360961 MODEL 8935691 pseudo LOC102007177 60S ribosomal protein L7a-like NW_004955451 3799761 3801516 + 102007177 AGCD01043072;AGCD01043073;XR_262625 MODEL 10208038 pseudo LOC106150343 lysine-rich coiled-coil protein 1-like NW_004955472 7688506 7690382 + 106150343 AGCD01053625 MODEL 9016820 protein-coding LOC102021163 cadherin-related family member 3 NW_004955517 2064891 2152364 + 102021163 AGCD01067615;AGCD01067616;AGCD01067617;AGCD01067618;AGCD01067619;GBDI01002490;XM_005409033;XM_005409034 XP_005409090;XP_005409091 MODEL 8936851 pseudo LOC102005731 UPF0711 protein C18orf21 pseudogene NW_004955426 5300983 5301585 + 102005731 AGCD01026120 MODEL 8738883 protein-coding Unc5b unc-5 netrin receptor B ENCODES a protein that exhibits netrin receptor activity (ortholog); INVOLVED IN anterior/posterior axon guidance (ortholog); axon guidance (ortholog); negative regulation of extrinsic apoptotic signaling pathway in absence of ligand (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Subarachnoid Hemorrhage (ortholog); FOUND IN membrane raft (ortholog) NW_004955437 20120996 20199877 - 102008458 AGCD01034870;GBCQ01178961;GBDI01255751;XM_005390040 XP_005390097 MODEL 8711416 protein-coding Ppp1r10 protein phosphatase 1 regulatory subunit 10 ENCODES a protein that exhibits enzyme-substrate adaptor activity (ortholog); protein phosphatase 1 binding (ortholog); protein phosphatase inhibitor activity (ortholog); INVOLVED IN negative regulation of cardiac muscle cell apoptotic process (ortholog); negative regulation of mitotic DNA damage checkpoint (ortholog); negative regulation of transcription elongation by RNA polymerase II (ortholog); ASSOCIATED WITH intellectual disability (ortholog); megacolon (ortholog); FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); nuclear body (ortholog) NW_004955583 621380 635595 - 102016764 AGCD01075842;AGCD01075843;GBBH01092539;XM_005414310;XM_005414312;XM_005414313;XM_013509798 XP_005414367;XP_005414369;XP_005414370;XP_013365252 MODEL 8745734 pseudo LOC102020316 protein FAM161A pseudogene NW_004955464 7637976 7641348 - 102020316 AGCD01050065 MODEL 8719292 protein-coding LOC102013368 disintegrin and metalloproteinase domain-containing protein 20-like NW_004955656 248 2205 - 102013368 AGCD01077844;GBDF01010724;GBDF01010725;XM_005415057 XP_005415114 MODEL 10085659 protein-coding Bend5 BEN domain containing 5 INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955464 9952128 9997938 + 106146240 AGCD01050118;GBDF01262049;XM_005398627;XM_013521736;XM_013521737 XP_005398684;XP_013377190;XP_013377191 MODEL 10284711 protein-coding Znf316 zinc finger protein 316 NW_004955460 13055543 13072522 - 106150014 AGCD01048668;AGCD01048669;GBCQ01178702;GBDJ01387246;XM_013521264 XP_013376718 MODEL 8852590 pseudo LOC102009062 kinesin-associated protein 3-like NW_004955420 7992286 7995293 - 102009062 AGCD01020709 MODEL 8728929 ncrna LOC102009823 uncharacterized LOC102009823 NW_004955468 7108012 7122808 + 102009823 AGCD01051995;AGCD01051996;GBDF01128606;XR_001236944;XR_001236945;XR_263399;XR_263400;XR_263401 MODEL 9066389 protein-coding LOC102022873 disintegrin and metalloproteinase domain-containing protein 5-like NW_004956525 2555 3839 + 102022873 AGCD01079741;GBDK01094790;XM_005415203 XP_005415260 MODEL 8747464 protein-coding Epm2a EPM2A glucan phosphatase, laforin ENCODES a protein that exhibits alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity (ortholog); carbohydrate binding (ortholog); carbohydrate phosphatase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); calcium ion transport (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); cataract (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of endoplasmic reticulum membrane (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog) NW_004955436 14925452 14982357 + 102005839 AGCD01033880;AGCD01033881;AGCD01033882;GBBH01222266;XM_005389308 XP_005389365 MODEL 8799462 protein-coding Wrnip1 WRN helicase interacting protein 1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); identical protein binding (ortholog); INVOLVED IN DNA synthesis involved in DNA repair (ortholog); regulation of DNA-templated DNA replication initiation (ortholog); FOUND IN chromosome, telomeric region (ortholog); nucleus (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955465 10574601 10594570 - 102026302 AGCD01050510;AGCD01050511;GBBH01090406;GBCQ01093710;XM_005398930 XP_005398987 MODEL 8908293 protein-coding Sgo1 shugoshin 1 ENCODES a protein that exhibits kinase binding (ortholog); INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); centriole-centriole cohesion (ortholog); chromosome segregation (ortholog); ASSOCIATED WITH Cardiac Arrhythmias (ortholog); chronic atrial and intestinal dysrhythmia (ortholog); Chronobiology Disorders (ortholog); FOUND IN centrosome (ortholog); chromosome, centromeric region (ortholog); condensed chromosome, centromeric region (ortholog) NW_004955430 12200601 12216845 - 102006155 AGCD01029489;AGCD01029490;GBDF01279460;XM_005387467;XM_005387468;XM_013515668;XM_013515669 XP_005387524;XP_005387525;XP_013371122;XP_013371123 MODEL 8708731 ncrna LOC102022481 uncharacterized LOC102022481 NW_004955465 10453747 10455158 + 102022481 AGCD01050510;GBCQ01164306;XR_263266 MODEL 8818470 pseudo LOC102026940 transcription elongation factor B polypeptide 1 pseudogene NW_004955406 5997423 5997747 - 102026940 AGCD01005744 MODEL 9061438 protein-coding Nectin1 nectin cell adhesion molecule 1 ENCODES a protein that exhibits carbohydrate binding (ortholog); cell adhesion mediator activity (ortholog); cell adhesion molecule binding (ortholog); INVOLVED IN axon guidance (ortholog); camera-type eye morphogenesis (ortholog); cell-cell adhesion (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); cleft lip (ortholog); FOUND IN adherens junction (ortholog); apical junction complex (ortholog); axon (ortholog) NW_004955412 20683007 20745069 - 102009814 AGCD01013012;GBDI01327713;XM_005378343 XP_005378400 MODEL 8875108 protein-coding Tada2a transcriptional adaptor 2A ENCODES a protein that exhibits histone acetyltransferase activity (ortholog); INVOLVED IN chromatin organization (ortholog); mitotic cell cycle (ortholog); regulation of cell cycle (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 17q12 deletion syndrome (ortholog); FOUND IN ATAC complex (ortholog); mitotic spindle (ortholog); nucleus (ortholog) NW_004955451 548373 599739 - 102026378 AGCD01042940;AGCD01042941;GBDF01279468;XM_005393934;XM_005393935;XM_005393936;XM_013519173 XP_005393991;XP_005393992;XP_005393993;XP_013374627 MODEL 9055160 pseudo LOC102016933 coiled-coil domain-containing protein 137 pseudogene NW_004955425 5286751 5288266 - 102016933 AGCD01025338 MODEL 8939668 pseudo LOC102018140 PDZ and LIM domain protein 1-like NW_004955448 372904 378142 + 102018140 AGCD01041230 MODEL 8934411 protein-coding Scn5a sodium voltage-gated channel alpha subunit 5 ENCODES a protein that exhibits ankyrin binding (ortholog); calmodulin binding (ortholog); enzyme binding (ortholog); INVOLVED IN atrial cardiac muscle cell action potential (ortholog); AV node cell action potential (ortholog); AV node cell to bundle of His cell communication (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrial fibrillation (ortholog); atrial standstill 1 (ortholog); FOUND IN caveola (ortholog); cell surface (ortholog); endoplasmic reticulum (ortholog) NW_004955427 25295517 25371419 + 102030218 AGCD01027538;GBCE01158045;XM_005386578;XM_005386579;XM_005386580;XM_005386584;XM_005386585;XM_005386587;XM_013515220;XM_013515221 XP_005386635;XP_005386636;XP_005386637;XP_005386641;XP_005386642;XP_005386644;XP_013370674;XP_013370675 MODEL 8875834 protein-coding Znf318 zinc finger protein 318 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955437 9221417 9259021 - 102020286 AGCD01034522;GBDF01087873;GBDI01054911;XM_013516978 XP_013372432 MODEL 8941886 protein-coding Depdc7 DEP domain containing 7 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); intellectual disability (ortholog) NW_004955422 13167191 13189080 - 102023485 AGCD01022811;AGCD01022812;AGCD01022813;GBCQ01008642;XM_005384163 XP_005384220 MODEL 8752772 protein-coding Klc4 kinesin light chain 4 ASSOCIATED WITH infantile Refsum disease (ortholog); Zellweger syndrome (ortholog) NW_004955437 9022873 9036026 + 102003280 AGCD01034513;AGCD01034514;GBBH01140327;XM_005389751;XM_005389752 XP_005389808;XP_005389809 MODEL 8822157 pseudo LOC102022482 transcription initiation factor TFIID subunit 11 pseudogene NW_004955465 7669723 7670348 - 102022482 AGCD01050465 MODEL 8742067 ncrna LOC102007499 uncharacterized LOC102007499 NW_004955404 47564519 47595536 - 102007499 AGCD01004483;GBDF01290414;XR_001235118;XR_259342 MODEL 39133072 snrna U6 U6 spliceosomal RNA 8895406 protein-coding Znf319 zinc finger protein 319 ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN nucleus (ortholog) NW_004955433 15561801 15567417 - 102009978 AGCD01031759;GBBH01107114;GBCE01108437;XM_005388431 XP_005388488 MODEL 8750291 protein-coding Skap1 src kinase associated phosphoprotein 1 ENCODES a protein that exhibits protein kinase binding (ortholog); protein phosphatase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN positive regulation of adaptive immune response (ortholog); positive regulation of cell adhesion (ortholog); positive regulation of cell-cell adhesion mediated by integrin (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); Ovarian Neoplasms (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955451 12791633 13043249 + 102007962 AGCD01043430;AGCD01043431;AGCD01043432;AGCD01043433;AGCD01043434;AGCD01043435;AGCD01043436;AGCD01043437;AGCD01043438;AGCD01043439;AGCD01043440;AGCD01043441;AGCD01043442;AGCD01043443;AGCD01043444;GBDI01286676;XM_005394244;XM_005394245;XM_005394246;XM_013519393 XP_005394301;XP_005394302;XP_005394303;XP_013374847 MODEL 8972170 pseudo LOC102005734 deoxynucleotidyltransferase terminal-interacting protein 2 pseudogene NW_004955428 1136198 1138064 + 102005734 AGCD01027605 MODEL 39133073 snrna U6 U6 spliceosomal RNA 8741730 protein-coding Spata24 spermatogenesis associated 24 ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); male germ cell nucleus (ortholog) NW_004955418 1157089 1163897 + 102018929 AGCD01018711;GBDJ01131117;XM_005382072 XP_005382129 MODEL 9049328 pseudo LOC102019385 signal peptide peptidase-like 2A pseudogene NW_004955472 8166187 8167552 - 102019385 AGCD01053640 MODEL 8972326 pseudo LOC102012149 high mobility group protein B1-like NW_004958114 9 505 + 102012149 AGCD01081510 MODEL 8926152 protein-coding Tmigd2 transmembrane and immunoglobulin domain containing 2 ENCODES a protein that exhibits coreceptor activity (ortholog); INVOLVED IN positive regulation of activated T cell proliferation (ortholog); positive regulation of angiogenesis (ortholog); positive regulation of cytokine production (ortholog); ASSOCIATED WITH amenorrhea (ortholog) NW_004955495 4561251 4578432 + 102008430 AGCD01061930;AGCD01061931;AGCD01061932;AGCD01061933;AGCD01061934;GBDK01263518;XM_005405795;XM_013505331;XM_013505332;XM_013505333;XM_013505334 XP_005405852;XP_013360785;XP_013360786;XP_013360787;XP_013360788 MODEL 8743547 protein-coding LOC102008662 uncharacterized LOC102008662 NW_004955538 2203100 2223177 - 102008662 AGCD01071109;GBDK01307063;XM_013507815;XM_013507816;XM_013507817 XP_013363269;XP_013363270;XP_013363271 MODEL 8846193 protein-coding Vax2 ventral anterior homeobox 2 ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN axonogenesis (ortholog); camera-type eye development (ortholog); dorsal/ventral axis specification (ortholog); ASSOCIATED WITH dystonia (ortholog); Methylmalonyl-CoA Epimerase Deficiency (ortholog); syndromic microphthalmia 5 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955424 14283336 14309809 - 102030092 AGCD01024649;AGCD01024650;GBDI01159286;XM_005385606 XP_005385663 MODEL 39133074 snrna U6 U6 spliceosomal RNA 8817903 ncrna LOC102006066 uncharacterized LOC102006066 NW_004955518 1072445 1103749 + 102006066 AGCD01067755;AGCD01067756;GBDF01079167;XR_264564 MODEL 9041803 ncrna LOC102012150 uncharacterized LOC102012150 NW_004955403 54885558 54890045 - 102012150 AGCD01003107;GBDF01110602;XR_259275 MODEL 39132509 snrna U6 U6 spliceosomal RNA 8982326 protein-coding Krt78 keratin 78 FOUND IN cornified envelope (ortholog) NW_004955458 138622 146264 - 102008601 AGCD01047106;GBDI01256250;XM_005397131 XP_005397188 MODEL 10266423 ncrna LOC106149130 uncharacterized LOC106149130 NW_004955404 4799030 4809892 - 106149130 AGCD01003299;AGCD01003300;XR_001235094 MODEL 9020507 protein-coding S1pr2 sphingosine-1-phosphate receptor 2 ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); G protein-coupled receptor activity (ortholog); G protein-coupled receptor binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); excitatory postsynaptic potential (ortholog); filopodium assembly (ortholog); PARTICIPATES IN sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness 68 (ortholog); Experimental Diabetes Mellitus (ortholog); familial hypercholesterolemia (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog); presynapse (ortholog) NW_004955495 1528963 1530527 - 102029193 AGCD01061698;GBBH01149946;GBDK01431367;XM_005405584 XP_005405641 MODEL 39133075 snrna U6 U6 spliceosomal RNA 8755481 pseudo LOC102007178 stress-induced-phosphoprotein 1-like NW_004955404 10266595 10270280 + 102007178 AGCD01003377 MODEL 8738210 protein-coding Tmlhe trimethyllysine hydroxylase, epsilon ENCODES a protein that exhibits oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (ortholog); trimethyllysine dioxygenase activity (ortholog); INVOLVED IN carnitine biosynthetic process (ortholog); PARTICIPATES IN carnitine biosynthetic pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); Agenesis of Corpus Callosum (ortholog); autistic disorder (ortholog); FOUND IN mitochondrion (ortholog) NW_004955594 272668 329997 + 102022765 AGCD01076425;AGCD01076426;GBBH01138990;XM_005414642;XM_013510005 XP_005414699;XP_013365459 MODEL 39132510 snrna U6 U6 spliceosomal RNA 8902833 protein-coding Lmo3 LIM domain only 3 INVOLVED IN exploration behavior (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); positive regulation of fat cell differentiation (ortholog); FOUND IN cytoplasm (ortholog) NW_004955413 13183294 13238875 - 102007980 AGCD01014009;AGCD01014010;GBDI01299626;XM_005379027;XM_005379028;XM_005379029;XM_005379030;XM_005379031;XM_005379032;XM_005379033;XM_005379034;XM_013511273;XM_013511274 XP_005379084;XP_005379085;XP_005379086;XP_005379087;XP_005379088;XP_005379089;XP_005379090;XP_005379091;XP_013366727;XP_013366728 MODEL 39132927 snrna U6 U6 spliceosomal RNA 8914499 protein-coding Bend6 BEN domain containing 6 ENCODES a protein that exhibits chromatin binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of Notch signaling pathway (ortholog); positive regulation of neuron differentiation (ortholog); FOUND IN nucleus (ortholog) NW_004955502 3123024 3152121 - 102027550 AGCD01064310;GBDF01305622;XM_005406887 XP_005406944 MODEL 8986562 protein-coding Tmod1 tropomodulin 1 ENCODES a protein that exhibits actin binding (ortholog); tropomyosin binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); lens fiber cell development (ortholog); muscle contraction (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type II (ortholog); FOUND IN actin filament (ortholog); COP9 signalosome (ortholog); cortical cytoskeleton (ortholog) NW_004955419 27841424 27915540 - 102025465 AGCD01020448;AGCD01020449;GBCE01052215;XM_005382850 XP_005382907 MODEL 8760866 ncrna LOC102024900 uncharacterized LOC102024900 NW_004955416 1276462 1328106 - 102024900 AGCD01016831;AGCD01016832;AGCD01016833;GBDF01223223;XR_001233287;XR_260346 MODEL 9000455 ncrna LOC102022874 uncharacterized LOC102022874 NW_004955403 52159368 52172169 + 102022874 AGCD01003003;GBCQ01030968;XR_001234081;XR_001234082;XR_001234085;XR_259257 MODEL 8807231 protein-coding Epm2aip1 EPM2A interacting protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN glycogen biosynthetic process (ortholog); positive regulation of glycogen (starch) synthase activity (ortholog); positive regulation of glycogen biosynthetic process (ortholog); ASSOCIATED WITH hereditary nonpolyposis colorectal cancer type 2 (ortholog); Lynch syndrome (ortholog); visceral heterotaxy 4 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of endoplasmic reticulum membrane (ortholog); nucleus (ortholog) NW_004955421 3882486 3889851 - 102005049 AGCD01021672;GBDI01180311;XM_005383692 XP_005383749 MODEL 8723723 pseudo LOC102026946 signal recognition particle subunit SRP72-like NW_004955408 28510159 28521759 + 102026946 AGCD01008714 MODEL 8835267 protein-coding LOC102008663 butyrophilin subfamily 3 member A1-like NW_004955437 1060528 1076067 + 102008663 AGCD01034189;XM_013516725 XP_013372179 MODEL 9018161 protein-coding LOC102017801 cytochrome c oxidase assembly protein COX15 homolog ENCODES a protein that exhibits oxidoreductase activity, acting on the CH-CH group of donors (ortholog); INVOLVED IN cytochrome complex assembly (ortholog); heme A biosynthetic process (ortholog); PARTICIPATES IN acute intermittent porphyria pathway; erythropoietic porphyria pathway; hereditary coproporphyria pathway; ASSOCIATED WITH cardiomyopathy (ortholog); genetic disease (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN cytochrome complex (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955507 5600605 5617556 - 102017801 AGCD01065680;GBDK01358382;XM_005407677 XP_005407734 MODEL 8937020 ncrna LOC102015162 uncharacterized LOC102015162 NW_004955583 527859 535777 - 102015162 AGCD01075834;GBDK01116207;XR_265095 MODEL 8850469 protein-coding Vbp1 VHL binding protein 1 ENCODES a protein that exhibits amyloid-beta binding (ortholog); unfolded protein binding (ortholog); INVOLVED IN negative regulation of amyloid fibril formation (ortholog); protein folding (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); prefoldin complex (ortholog) NW_004955594 450048 477504 - 102023763 AGCD01076427;AGCD01076428;GBCC01015796;XM_005414645;XM_005414646 XP_005414702;XP_005414703 MODEL 9065594 ncrna LOC102007503 uncharacterized LOC102007503 NW_004955453 6872218 6875092 - 102007503 AGCD01044732;GBDF01261600;XR_001236134 MODEL 8937125 ncrna LOC102020319 uncharacterized LOC102020319 NW_004955413 9761188 9765424 - 102020319 AGCD01013910;GBCE01033977;XR_260074 MODEL 8916145 pseudo LOC102013370 serine/Arginine-related protein 53 pseudogene NW_004955403 40310550 40311721 - 102013370 AGCD01002680;XM_005373899 MODEL 8724161 protein-coding LOC102022485 intelectin-1a-like NW_004955468 12676510 12685740 - 102022485 AGCD01052176;GBCQ01163630;XM_005400223;XM_005400224;XM_013522494 XP_005400280;XP_005400281;XP_013377948 MODEL 8973994 protein-coding Ppp1r11 protein phosphatase 1 regulatory inhibitor subunit 11 ENCODES a protein that exhibits phosphatase binding (ortholog); protein phosphatase inhibitor activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN defense response to Gram-positive bacterium (ortholog); negative regulation of cytokine production (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH megacolon (ortholog); FOUND IN cytoplasm (ortholog) NW_004955583 198233 201312 + 102011259 AGCD01075802;GBDF01007793;XM_005414297 XP_005414354 MODEL 8971238 protein-coding Klf1 KLF transcription factor 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cellular response to endothelin (ortholog); chromatin remodeling (ortholog); embryonic hemopoiesis (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955415 31939994 31943539 - 102024559 AGCD01016703;GBDI01044226;XM_005381037;XM_013512240 XP_005381094;XP_013367694 MODEL 8989798 protein-coding LOC102003241 MARVEL domain-containing protein 3-like NW_004955484 4331566 4346570 + 102003241 AGCD01058209;AGCD01058210;GBCQ01038738;XM_013503949 XP_013359403 MODEL 8704911 protein-coding LOC102028625 lymphoid-restricted membrane protein-like NW_004955413 20134003 20227710 + 102028625 AGCD01014210;AGCD01014211;AGCD01014212;GBDI01212292;XM_013511444;XM_013511445 XP_013366898;XP_013366899 MODEL 8802783 pseudo LOC102005735 L-lactate dehydrogenase A-like 6B NW_004955507 6103959 6105265 - 102005735 AGCD01065696 MODEL 9041222 protein-coding Wsb1 WD repeat and SOCS box containing 1 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN protein aggregate center assembly (ortholog); protein K27-linked ubiquitination (ortholog); FOUND IN cytoplasm (ortholog) NW_004955481 6014218 6034850 - 102015405 AGCD01057006;GBDJ01022597;XM_005402791;XM_013503496;XM_013503497 XP_005402848;XP_013358950;XP_013358951 MODEL 8758374 ncrna LOC102016935 uncharacterized LOC102016935 NW_004955504 4587879 4595233 - 102016935 AGCD01064887;XR_264293;XR_264294 MODEL 8810076 protein-coding Klf10 KLF transcription factor 10 ENCODES a protein that exhibits core promoter sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN bone mineralization (ortholog); cellular response to endothelin (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH Cohen syndrome (ortholog); FOUND IN nucleus (ortholog) NW_004955417 27165146 27168604 - 102019170 AGCD01018535;GBCB01026324;GBCB01038374;XM_005381943 XP_005382000 MODEL 8895412 protein-coding Bend7 BEN domain containing 7 ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog) NW_004955429 20674390 20756760 + 102010079 AGCD01028988;AGCD01028989;AGCD01028990;GBCE01135033;GBDK01082325;XM_005387164 XP_005387221 MODEL 8996544 protein-coding Tada2b transcriptional adaptor 2B PARTICIPATES IN RNA polymerase II transcription initiation pathway; FOUND IN SAGA complex (ortholog); SAGA-type complex (ortholog) NW_004955514 3468078 3478085 - 102015558 AGCD01067096;GBBH01164639;GBDF01085926;XM_005408796 XP_005408853 MODEL 8865912 protein-coding LOC102018145 cytochrome P450 4V2 INVOLVED IN fatty acid omega-oxidation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Bietti crystalline corneoretinal dystrophy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955403 22870299 22912221 - 102018145 AGCD01002231;AGCD01002232;AGCD01002233;GBCE01187980;GBDK01126781;XM_005373433 XP_005373490 MODEL 8843475 ncrna LOC102024534 uncharacterized LOC102024534 NW_004955458 13179440 13185896 + 102024534 AGCD01047796;GBDF01253149;XR_262996 MODEL 10217998 ncrna LOC106146861 uncharacterized LOC106146861 NW_004955499 1597874 1606919 - 106146861 AGCD01063370;AGCD01063371;AGCD01063372;GBCB01069458;XR_001231464 MODEL 8958426 protein-coding Phc2 polyhomeotic homolog 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN spermatogenesis (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN heterochromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955452 11490336 11538618 - 102008054 AGCD01044337;AGCD01044338;AGCD01044339;GBCQ01006896;XM_013519534;XM_013519535 XP_013374988;XP_013374989 MODEL 9055312 protein-coding Tmod2 tropomodulin 2 ENCODES a protein that exhibits actin binding (ortholog); tropomyosin binding (ortholog); INVOLVED IN learning or memory (ortholog); neuron-neuron synaptic transmission (ortholog); positive regulation of G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); developmental and epileptic encephalopathy 13 (ortholog); FOUND IN growth cone (ortholog) NW_004955409 2801173 2842717 - 102020985 AGCD01009220;AGCD01009221;AGCD01009222;GBBH01101003;XM_005376636;XM_005376637 XP_005376693;XP_005376694 MODEL 9062049 ncrna LOC102006068 uncharacterized LOC102006068 NW_004955522 4443395 4446145 - 102006068 AGCD01068417;GBDF01236174;XR_001231902 MODEL 8832315 ncrna LOC102012151 uncharacterized LOC102012151 NW_004955452 12802984 12851810 - 102012151 AGCD01044366;AGCD01044367;GBDF01073900;XR_001236023;XR_001236024 MODEL 10214263 ncrna LOC106149974 uncharacterized LOC106149974 NW_004955458 1828045 1847679 + 106149974 AGCD01047206;GBCQ01121701;XR_001236474 MODEL 8766280 pseudo LOC102009073 uncharacterized LOC102009073 NW_004955422 6052412 6078239 - 102009073 AGCD01022588;AGCD01022589 MODEL 8835659 pseudo LOC102017802 transcription factor SPT20 homolog pseudogene NW_004955509 4675525 4678213 - 102017802 AGCD01066084;XM_005407843 MODEL 8976836 protein-coding Tada3 transcriptional adaptor 3 ENCODES a protein that exhibits nuclear receptor binding (ortholog); protein domain specific binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN chromatin organization (ortholog); mitotic cell cycle (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); long QT syndrome (ortholog); myoclonic-atonic epilepsy (ortholog); FOUND IN ATAC complex (ortholog); mitotic spindle (ortholog); nucleoplasm (ortholog) NW_004955561 1304222 1314092 - 102008779 AGCD01073848;GBCQ01040112;XM_005413033 XP_005413090 MODEL 8772217 ncrna LOC102007508 uncharacterized LOC102007508 NW_004955406 43082611 43102023 - 102007508 AGCD01006724;XR_001230800 MODEL 8861182 protein-coding LOC102022486 taste receptor type 2 member 8-like NW_004955413 7969812 7970744 - 102022486 AGCD01013841;XM_005379624 XP_005379681 MODEL 8930502 protein-coding Vcam1 vascular cell adhesion molecule 1 ENCODES a protein that exhibits cell adhesion mediator activity (ortholog); cell adhesion molecule binding (ortholog); integrin binding (ortholog); INVOLVED IN amine metabolic process (ortholog); cardiac neuron differentiation (ortholog); cell adhesion (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); Anaphylaxis (ortholog); anemia (ortholog); FOUND IN alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex (ortholog); apical part of cell (ortholog); apical plasma membrane (ortholog) NW_004955435 5390745 5410025 + 102005627 AGCD01032885;AGCD01032886;GBCE01022806;XM_005388797 XP_005388854 MODEL 8855920 protein-coding Sgo2 shugoshin 2 INVOLVED IN female meiotic nuclear division (ortholog); maintenance of meiotic sister chromatid cohesion, centromeric (ortholog); male meiotic nuclear division (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Pulmonary Arterial Hypertension (ortholog); FOUND IN chromosome, centromeric region (ortholog); condensed chromosome, centromeric region (ortholog); kinetochore (ortholog) NW_004955403 879354 905605 - 102005871 AGCD01001709;AGCD01001710;AGCD01001711;GBDF01051842;XM_005373247;XM_005373248;XM_013511911 XP_005373304;XP_005373305;XP_013367365 MODEL 8902036 pseudo LOC102024901 voltage-dependent anion-selective channel protein 2 pseudogene NW_004955416 11892735 11893755 - 102024901 AGCD01017194 MODEL 10236597 ncrna LOC106150344 uncharacterized LOC106150344 NW_004955472 12739492 12743856 + 106150344 AGCD01053814;GBDJ01139285;XR_001237105 MODEL 8723231 protein-coding LOC102005737 olfactory receptor 8J3-like NW_004955511 1491665 1492606 + 102005737 AGCD01066369;XM_005407963 XP_005408020 MODEL 8781407 protein-coding Depp1 DEPP autophagy regulator 1 INVOLVED IN regulation of autophagy (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); COVID-19 (ortholog); endometriosis (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); mitochondrion (ortholog) NW_004955546 2291829 2293375 - 102013551 AGCD01072084;GBCB01025706;XM_005411783 XP_005411840 MODEL 8738234 ncrna LOC102026948 uncharacterized LOC102026948 NW_004955409 3548107 3563415 - 102026948 AGCD01009247;AGCD01009248;GBDF01147487;XR_259749 MODEL 8852279 protein-coding LOC102016940 olfactory receptor 1086-like NW_004955511 5079438 5080370 + 102016940 AGCD01066546;XM_005408283 XP_005408340 MODEL 8927099 protein-coding Klf11 KLF transcription factor 11 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cellular response to endothelin (ortholog); hemopoiesis (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); Hepatomegaly (ortholog); Insulin Resistance (ortholog); FOUND IN cytosol (ortholog); focal adhesion (ortholog); nuclear body (ortholog) NW_004955487 5448869 5454322 + 102026433 AGCD01059333;GBDF01053930;GBDK01432660;XM_013504377 XP_013359831 MODEL 8745459 protein-coding LOC102005739 olfactory receptor 5L1-like NW_004955511 649905 655429 + 102005739 AGCD01066337;XM_013506360 XP_013361814 MODEL 8712764 pseudo LOC102015165 prostaglandin E synthase 3-like NW_004955450 17741936 17745554 - 102015165 AGCD01042884 MODEL 9058739 protein-coding LOC102018147 ectonucleoside triphosphate diphosphohydrolase 6-like NW_004955847 889 15804 - 102018147 AGCD01078483;GBCE01185994;GBCE01186006;XM_005415131;XM_005415132;XM_005415133;XM_005415134;XM_013510199 XP_005415188;XP_005415189;XP_005415190;XP_005415191;XP_013365653 MODEL 8749102 pseudo LOC102016943 DNA/RNA-binding protein KIN17 pseudogene NW_004955433 1846519 1847688 + 102016943 AGCD01031371 MODEL 8998849 pseudo LOC102012152 UMP-CMP kinase-like NW_004955405 25714441 25715377 + 102012152 AGCD01005179 MODEL 8888219 protein-coding Phc3 polyhomeotic homolog 3 PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 1 (ortholog); Fanconi-Bickel syndrome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); PcG protein complex (ortholog) NW_004955420 329215 403191 - 102016814 AGCD01020540;AGCD01020541;AGCD01020542;GBDI01054007;XM_005382964;XM_005382969;XM_013513437;XM_013513438;XM_013513439 XP_005383021;XP_005383026;XP_013368891;XP_013368892;XP_013368893 MODEL 8847927 ncrna LOC102003244 uncharacterized LOC102003244 NW_004955486 8568818 8579925 + 102003244 AGCD01059151;GBDF01224300;XR_001231117;XR_001231118;XR_001231119;XR_263964 MODEL 8902871 ncrna LOC102009080 uncharacterized LOC102009080 NW_004955502 7625008 7627557 + 102009080 AGCD01064452;GBDF01238432;XR_264267 MODEL 8984881 protein-coding LOC102021164 serine/arginine repetitive matrix protein 2-like NW_004955519 3830018 3830847 - 102021164 AGCD01067970;XM_005409184 XP_005409241 MODEL 8790732 pseudo LOC102018148 fructose-bisphosphate aldolase A pseudogene NW_004955403 51024231 51025067 - 102018148 AGCD01002985 MODEL 8883751 protein-coding Scn7a sodium voltage-gated channel alpha subunit 7 ENCODES a protein that exhibits osmolarity-sensing monoatomic cation channel activity (ortholog); sodium channel activity (ortholog); voltage-gated channel activity (ortholog); INVOLVED IN cellular homeostasis (ortholog); membrane depolarization during action potential (ortholog); neuronal action potential (ortholog); ASSOCIATED WITH autistic disorder (ortholog); brain infarction (ortholog); FOUND IN glial cell projection (ortholog); plasma membrane (ortholog); voltage-gated sodium channel complex (ortholog) NW_004955449 7714424 7798383 + 102008907 AGCD01041994;AGCD01041995;AGCD01041996;AGCD01041997;GBBH01046787;XM_005393284 XP_005393341 MODEL 9066919 protein-coding LOC102007509 uncharacterized LOC102007509 NW_004955406 41604564 41614798 + 102007509 AGCD01006688;GBDI01238964;XM_013523033;XR_001237101;XR_001237102;XR_001237104;XR_001237106;XR_001237107 XP_013378487 MODEL 8771879 protein-coding Epn1 epsin 1 ENCODES a protein that exhibits clathrin adaptor activity (ortholog); molecular sequestering activity (ortholog); transcription factor binding (ortholog); INVOLVED IN clathrin coat assembly (ortholog); embryonic organ development (ortholog); endocytosis (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; ASSOCIATED WITH middle cerebral artery infarction (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog); postsynapse (ortholog) NW_004955567 669333 683283 - 102013769 AGCD01074423;AGCD01074424;GBCE01052885;GBCQ01011760;XM_005413292 XP_005413349 MODEL 8834980 protein-coding LOC102022491 olfactory receptor 52I1-like NW_004955414 20188826 20191310 + 102022491 AGCD01015360;XM_013512019 XP_013367473 MODEL 8974472 pseudo LOC102024902 zinc finger protein 45 pseudogene NW_004955478 9544242 9546455 - 102024902 AGCD01056077 MODEL 10215760 pseudo LOC106150345 ATP-dependent RNA helicase DDX18 pseudogene NW_004955473 5522962 5525460 - 106150345 AGCD01053979 MODEL 39132514 snrna U6 U6 spliceosomal RNA 8844690 pseudo LOC102006077 non-histone chromosomal protein HMG-14 pseudogene NW_004955547 2571567 2571850 - 102006077 AGCD01072283 MODEL 8885015 protein-coding LOC102021165 chemokine-like factor NW_004955433 23108920 23126737 + 102021165 AGCD01031952;GBCE01152700;XM_005388467 XP_005388524 MODEL 39132928 snrna U6 U6 spliceosomal RNA 39132517 snrna U6 U6 spliceosomal RNA 8764493 ncrna LOC102017803 uncharacterized LOC102017803 NW_004955510 6353074 6359985 - 102017803 AGCD01066305;GBCQ01116243;XR_264413 MODEL 8807997 pseudo LOC102006081 26S protease regulatory subunit 4 pseudogene NW_004955444 10175071 10176371 - 102006081 AGCD01039007;XR_262256 MODEL 8807676 protein-coding Ppp1r12a protein phosphatase 1 regulatory subunit 12A ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); enzyme inhibitor activity (ortholog); phosphatase regulator activity (ortholog); INVOLVED IN cellular response to xenobiotic stimulus (ortholog); centrosome cycle (ortholog); mitotic cell cycle (ortholog); ASSOCIATED WITH autosomal dominant centronuclear myopathy (ortholog); congenital structural myopathy (ortholog); genetic disease (ortholog); FOUND IN A band (ortholog); actin cytoskeleton (ortholog); centrosome (ortholog) NW_004955405 18594191 18727345 - 102019767 AGCD01005022;AGCD01005023;AGCD01005024;AGCD01005025;GBDJ01073959;XM_005374361;XM_005374363;XM_013517866;XM_013517875;XM_013517877;XM_013517885;XM_013517896;XM_013517904;XM_013517907 XP_005374418;XP_005374420;XP_013373320;XP_013373329;XP_013373331;XP_013373339;XP_013373350;XP_013373358;XP_013373361 MODEL 9034068 protein-coding LOC102021170 ubiquitin-conjugating enzyme E2 D2-like NW_004955525 2253534 2254410 + 102021170 AGCD01069082;GBDK01156554;XM_005409734;XM_005409735 XP_005409791;XP_005409792 MODEL 8915486 pseudo LOC102012157 signal peptidase complex catalytic subunit SEC11A pseudogene NW_004955406 365288 365823 - 102012157 AGCD01005615 MODEL 39132930 snrna U6 U6 spliceosomal RNA 8861987 pseudo LOC102003248 60S ribosomal protein L17 pseudogene NW_004955422 7684598 7685166 + 102003248 AGCD01022643;XM_005384099 MODEL 8904349 protein-coding Tent5b terminal nucleotidyltransferase 5B ENCODES a protein that exhibits poly(A) RNA polymerase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of cell cycle (ortholog); negative regulation of cell population proliferation (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955452 6345152 6353479 - 102028154 AGCD01044106;GBCE01016396;XM_005394894 XP_005394951 MODEL 39133432 snrna U4 U4 spliceosomal RNA 8821023 protein-coding Krt79 keratin 79 ENCODES a protein that exhibits enzyme binding (ortholog) NW_004955458 121681 132775 - 102008292 AGCD01047106;GBCQ01115306;XM_005397130 XP_005397187 MODEL 9033711 protein-coding LOC102007180 60S ribosomal protein L31 NW_004955404 47061481 47061923 + 102007180 AGCD01004474;XM_005374211 XP_005374268 MODEL 9045935 ncrna LOC102009827 uncharacterized LOC102009827 NW_004955414 26483702 26488503 - 102009827 AGCD01015645;GBCB01079189;XR_260198 MODEL 8931485 protein-coding Best1 bestrophin 1 ENCODES a protein that exhibits bicarbonate channel activity (ortholog); chloride channel activity (ortholog); identical protein binding (ortholog); INVOLVED IN chloride transport (ortholog); detection of light stimulus involved in visual perception (ortholog); gamma-aminobutyric acid secretion, neurotransmission (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; ASSOCIATED WITH autosomal dominant vitreoretinochoroidopathy (ortholog); bestrophinopathy (ortholog); cone-rod dystrophy (ortholog); FOUND IN basal plasma membrane (ortholog); basolateral plasma membrane (ortholog); chloride channel complex (ortholog) NW_004955511 5773025 5783800 - 102007797 AGCD01066581;GBDF01053629;XM_005408133;XM_005408134;XM_013506425;XM_013506426;XR_001231698 XP_005408190;XP_005408191;XP_013361879;XP_013361880 MODEL 8765069 protein-coding Unc5c unc-5 netrin receptor C ENCODES a protein that exhibits netrin receptor activity (ortholog); netrin receptor activity involved in chemorepulsion (ortholog); protein kinase binding (ortholog); INVOLVED IN anterior/posterior axon guidance (ortholog); apoptotic process (ortholog); axon guidance (ortholog); ASSOCIATED WITH renal cell carcinoma (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); filopodium (ortholog) NW_004955405 5791286 6049952 - 102015688 AGCD01004687;AGCD01004688;AGCD01004689;GBDJ01028498;XM_013517438 XP_013372892 MODEL 9050042 pseudo LOC102024539 small acidic protein pseudogene NW_004955464 4195653 4196232 + 102024539 AGCD01049986 MODEL 9041298 protein-coding S1pr3 sphingosine-1-phosphate receptor 3 ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); inflammatory response (ortholog); negative regulation of establishment of endothelial barrier (ortholog); PARTICIPATES IN sphingosine 1-phosphate signaling pathway; FOUND IN plasma membrane (ortholog); presynapse (ortholog) NW_004955515 3024258 3035996 - 102018012 AGCD01067267;GBCE01095063;XM_005408882 XP_005408939 MODEL 8788114 ncrna LOC102024903 uncharacterized LOC102024903 NW_004955416 31750129 31751236 + 102024903 AGCD01017769;XR_260452 MODEL 8793199 pseudo LOC102013371 40S ribosomal protein S3a pseudogene NW_004955451 12173170 12175229 - 102013371 AGCD01043377 MODEL 9022768 protein-coding LOC102009828 olfactory receptor 52N2-like NW_004955414 21765507 21766469 + 102009828 AGCD01015432;XM_005380503 XP_005380560 MODEL 8841411 protein-coding Deptor DEP domain containing MTOR interacting protein ENCODES a protein that exhibits phosphatidic acid binding (ortholog); protein kinase inhibitor activity (ortholog); protein serine/threonine kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of cell size (ortholog); negative regulation of protein kinase activity (ortholog); negative regulation of TOR signaling (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH hereditary multiple exostoses (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN lysosomal membrane (ortholog) NW_004955417 25538609 25563374 + 102008413 AGCD01018490;AGCD01018491;GBCB01025767;XM_005381914;XM_005381915;XM_013512835 XP_005381971;XP_005381972;XP_013368289 MODEL 8929494 ncrna LOC102015166 uncharacterized LOC102015166 NW_004955403 14039207 14134842 - 102015166 AGCD01002018;GBDF01075806;XR_259172;XR_259173 MODEL 8799438 pseudo LOC102024540 sodium/potassium-transporting ATPase subunit beta-3 pseudogene NW_004955411 34920604 34921576 + 102024540 AGCD01012417 MODEL 8781949 protein-coding LOC102007188 torsin-1A-interacting protein 2 NW_004955406 19092006 19122814 - 102007188 AGCD01006074;GBBH01032401;XM_005374979;XM_005374980;XM_005374981;XM_013521267;XM_013521272;XM_013521279;XM_013521287 XP_005375036;XP_005375037;XP_005375038;XP_013376721;XP_013376726;XP_013376733;XP_013376741 MODEL 8948807 ncrna LOC102016944 uncharacterized LOC102016944 NW_004955517 1518354 1521381 - 102016944 AGCD01067600;GBDF01224758;XR_001231821 MODEL 8946359 protein-coding Taf1 TATA-box binding protein associated factor 1 ENCODES a protein that exhibits acetyl-CoA binding (ortholog); DNA binding (ortholog); histone acetyltransferase activity (ortholog); INVOLVED IN cellular response to ATP (ortholog); cellular response to UV (ortholog); DNA damage response (ortholog); PARTICIPATES IN histone modification pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN chromatin (ortholog); MLL1 complex (ortholog); nucleolus (ortholog) NW_004955475 10930175 11006876 + 102008090 AGCD01055127;AGCD01055128;AGCD01055129;AGCD01055130;AGCD01055131;GBDJ01313931;XM_005401669;XM_005401670;XM_005401671;XM_013502870 XP_005401726;XP_005401727;XP_005401728;XP_013358324 MODEL 9033451 protein-coding LOC102024918 olfactory receptor 2A14-like NW_004955491 435674 436629 + 102024918 AGCD01060335;XM_005404882 XP_005404939 MODEL 8790503 protein-coding LOC102008665 dnaJ homolog subfamily B member 6-like NW_004955438 5105330 5113520 - 102008665 AGCD01035057;GBDF01094584;GBDF01237045;XM_013517150 XP_013372604 MODEL 8846350 pseudo LOC102007193 keratin-associated protein 12-1-like NW_004955407 41612826 41613140 + 102007193 AGCD01007872 MODEL 8800798 ncrna LOC102018152 uncharacterized LOC102018152 NW_004955452 7664103 7667411 - 102018152 AGCD01044180;GBDI01004050;XR_262660 MODEL 39133433 snrna U4 U4 spliceosomal RNA 8844251 ncrna LOC102019386 uncharacterized LOC102019386 NW_004955415 31794197 31797398 + 102019386 AGCD01016697;GBDF01178246;XR_001233216;XR_260331 MODEL 8869745 protein-coding Lmo4 LIM domain only 4 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN motor neuron axon guidance (ortholog); negative regulation of protein-containing complex assembly (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; ASSOCIATED WITH anencephaly (ortholog); FOUND IN cell leading edge (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955423 6849542 6865928 - 102017889 AGCD01023588;AGCD01023589;GBDJ01075782;GBDK01018084;XM_005385115 XP_005385172 MODEL 8960529 protein-coding Tent5c terminal nucleotidyltransferase 5C ENCODES a protein that exhibits poly(A) RNA polymerase activity (ortholog); INVOLVED IN in utero embryonic development (ortholog); mRNA stabilization (ortholog); negative regulation of cell differentiation (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955435 20790410 20811730 + 102008884 AGCD01033465;AGCD01033466;GBDF01236475;XM_005389058;XM_005389059 XP_005389115;XP_005389116 MODEL 8778547 protein-coding LOC102020322 Fc receptor-like protein 2 NW_004955468 9737059 9749159 + 102020322 AGCD01052057;GBBH01066864;XM_013522273 XP_013377727 MODEL 9043631 protein-coding Prss16 serine protease 16 FOUND IN endosome (ortholog); lysosome (ortholog) NW_004955465 13152701 13158411 + 102003636 AGCD01050590;AGCD01050591;GBDI01355224;XM_013521807 XP_013377261 MODEL 8701952 protein-coding Klf12 KLF transcription factor 12 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); schizophrenia (ortholog); substance-related disorder (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955404 32715636 33127525 + 102025205 AGCD01004053;AGCD01004054;AGCD01004055;AGCD01004056;AGCD01004057;AGCD01004058;GBDI01055813;XM_005374183;XM_013516591;XM_013516595;XM_013516598 XP_005374240;XP_013372045;XP_013372049;XP_013372052 MODEL 8855829 ncrna LOC102028627 uncharacterized LOC102028627 NW_004955413 27389823 27402503 - 102028627 AGCD01014504;GBDF01223175;XR_260118;XR_260119 MODEL 8817863 protein-coding Unc5cl unc-5 family C-terminal like ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of JNK cascade (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955437 7697062 7710240 - 102005175 AGCD01034465;GBCQ01139909;XM_005389664;XR_001235004 XP_005389721 MODEL 39132334 snrna U6 U6 spliceosomal RNA 8700755 ncrna LOC102023920 uncharacterized LOC102023920 NW_004955422 16265263 16269498 + 102023920 AGCD01022894;GBDF01193207;XR_260890 MODEL 8804181 ncrna LOC102009829 uncharacterized LOC102009829 NW_004955415 3199565 3227325 + 102009829 AGCD01015927;GBDF01041582;XR_260260;XR_260261 MODEL 8836713 pseudo LOC102006086 diphosphoinositol polyphosphate phosphohydrolase 2 pseudogene NW_004955594 540020 541200 + 102006086 AGCD01076434 MODEL 10355195 ncrna LOC106146862 uncharacterized LOC106146862 NW_004955499 1060811 1061379 - 106146862 AGCD01063311;GBCE01121756;XR_001231466 MODEL 8775835 protein-coding LOC102015168 potassium channel subfamily U member 1-like NW_004956264 3132 5744 - 102015168 AGCD01079346;XM_005415186 XP_005415243 MODEL 8890332 protein-coding LOC102007511 immunoglobulin omega chain-like NW_004955455 6477568 6478007 + 102007511 AGCD01045797;GBDI01376516;XM_013520310 XP_013375764 MODEL 8738033 protein-coding Sgpl1 sphingosine-1-phosphate lyase 1 ENCODES a protein that exhibits sphinganine-1-phosphate aldolase activity (ortholog); INVOLVED IN androgen metabolic process (ortholog); apoptotic signaling pathway (ortholog); ceramide metabolic process (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH genetic disease (ortholog); nephrotic syndrome (ortholog); nephrotic syndrome type 14 (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955437 20489641 20547105 - 102009318 AGCD01034874;AGCD01034875;AGCD01034876;AGCD01034877;GBCE01031815;XM_005390043;XM_013517017 XP_005390100;XP_013372471 MODEL 8807813 protein-coding Scn8a sodium voltage-gated channel alpha subunit 8 ENCODES a protein that exhibits sodium ion binding (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN action potential (ortholog); adult walking behavior (ortholog); locomotory behavior (ortholog); ASSOCIATED WITH Ataxia (ortholog); autistic disorder (ortholog); benign familial infantile seizures 5 (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); cell junction (ortholog) NW_004955547 2086215 2201300 + 102026263 AGCD01072256;AGCD01072257;AGCD01072258;AGCD01072259;AGCD01072260;GBDF01162571;XM_005411910;XM_005411911;XM_005411914;XM_005411915;XM_005411916;XM_013508490;XR_001232232;XR_001232233 XP_005411967;XP_005411968;XP_005411971;XP_005411972;XP_005411973;XP_013363944 MODEL 8783559 ncrna LOC102012158 uncharacterized LOC102012158 NW_004955407 18483756 18702374 - 102012158 AGCD01007271;AGCD01007272;AGCD01007273;AGCD01007274;AGCD01007275;GBDF01046486;XR_001231621;XR_001231624;XR_001231625;XR_001231626;XR_001231627;XR_001231628;XR_259571 MODEL 8713689 pseudo LOC102024925 cilia- and flagella-associated protein 45-like NW_004955422 23895002 23902521 - 102024925 AGCD01023210 MODEL 8886867 protein-coding Spata25 spermatogenesis associated 25 INVOLVED IN spermatogenesis (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); galactosialidosis (ortholog) NW_004955445 11408552 11409730 + 102026364 AGCD01039690;GBDF01005574;XM_005392403 XP_005392460 MODEL 8892690 protein-coding Nectin2 nectin cell adhesion molecule 2 ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN acrosome assembly (ortholog); cellular anatomical entity morphogenesis (ortholog); cilium organization (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); atherosclerosis (ortholog); FOUND IN apical junction complex (ortholog); cell surface (ortholog); cell-cell contact zone (ortholog) NW_004955555 1959702 1985679 + 102027465 AGCD01073118;GBDF01009102;XM_005412475;XM_005412476 XP_005412532;XP_005412533 MODEL 8997258 pseudo LOC102008668 protein S100-A10 pseudogene NW_004955547 477402 477949 + 102008668 AGCD01072162;XM_005411852 MODEL 8709149 protein-coding LOC102007512 keratin-associated protein 10-7-like NW_004955407 41555800 41557892 - 102007512 AGCD01007870;XM_005375893 XP_005375950 MODEL 8803636 pseudo LOC102015173 caspase-3-like NW_004955452 3820476 3826409 - 102015173 AGCD01043948;AGCD01043949 MODEL 8736626 protein-coding LOC102022876 putative 60S ribosomal protein L37a NW_004955452 8163567 8163946 + 102022876 AGCD01044211;GBBH01160675;XM_005394976 XP_005395033 MODEL 8730016 protein-coding Spaca3 sperm acrosome associated 3 ENCODES a protein that exhibits lysozyme activity (ortholog); INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); sperm-egg recognition (ortholog); FOUND IN acrosomal matrix (ortholog); acrosomal membrane (ortholog); acrosomal vesicle (ortholog) NW_004955481 7832518 7840130 + 102028859 AGCD01057078;GBDF01008490;XM_005402831;XM_005402832;XM_005402833 XP_005402888;XP_005402889;XP_005402890 MODEL 8943708 ncrna LOC102013376 uncharacterized LOC102013376 NW_004955453 7378233 7386961 + 102013376 AGCD01044743;GBDF01180127;XR_262716 MODEL 8942509 protein-coding LOC102024926 uncharacterized LOC102024926 NW_004955495 7201176 7202721 - 102024926 AGCD01062124;GBDF01075644;XM_005406040;XR_001231387 XP_005406097 MODEL 8757362 pseudo LOC102009081 transcription factor CP2-like protein 1 pseudogene NW_004955503 2232097 2233831 + 102009081 AGCD01064604 MODEL 9065184 protein-coding LOC102017804 vomeronasal type-1 receptor 90-like NW_004955429 12364461 12365522 - 102017804 AGCD01028715;XM_005387247 XP_005387304 MODEL 8900337 protein-coding Lmo7 LIM domain 7 ENCODES a protein that exhibits actinin binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); chromosome 13q14 deletion syndrome (ortholog); FOUND IN adherens junction (ortholog); apical plasma membrane (ortholog); cell surface (ortholog) NW_004955404 31197156 31388571 - 102020628 AGCD01004017;AGCD01004018;GBCQ01064193;GBDF01082235;XM_005374167;XM_005374168;XM_005374169;XM_013516543;XM_013516544;XM_013516549;XM_013516551;XM_013516553;XM_013516561;XM_013516563;XM_013516566;XM_013516569;XM_013516572 XP_005374224;XP_005374225;XP_005374226;XP_013371997;XP_013371998;XP_013372003;XP_013372005;XP_013372007;XP_013372015;XP_013372017;XP_013372020;XP_013372023;XP_013372026 MODEL 39132336 snrna U6 U6 spliceosomal RNA 8928626 ncrna LOC102009084 uncharacterized LOC102009084 NW_004955427 14231272 14244398 + 102009084 AGCD01027268;GBBH01218259;XR_261275 MODEL 8814297 ncrna LOC102009839 uncharacterized LOC102009839 NW_004955418 27098258 27125846 - 102009839 AGCD01019403;GBDK01371466;XR_001233544;XR_001233545;XR_001233546;XR_260585 MODEL 8957780 protein-coding Epn2 epsin 2 INVOLVED IN embryonic organ development (ortholog); in utero embryonic development (ortholog); negative regulation of sprouting angiogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 2 (ortholog); Joubert syndrome 1 (ortholog); FOUND IN clathrin coat of endocytic vesicle (ortholog); intracellular membrane-bounded organelle (ortholog); postsynaptic endocytic zone (ortholog) NW_004955467 419342 505909 - 102003745 AGCD01051219;AGCD01051220;AGCD01051221;AGCD01051222;AGCD01051223;GBCB01023639;XM_005399274;XM_005399276;XM_005399277 XP_005399331;XP_005399333;XP_005399334 MODEL 8935612 ncrna LOC102005742 uncharacterized LOC102005742 NW_004955432 18897605 18899874 + 102005742 AGCD01031161;GBDF01006386;XR_261534 MODEL 8749760 protein-coding Krt8 keratin 8 ENCODES a protein that exhibits protein-containing complex binding (ortholog); scaffold protein binding (ortholog); INVOLVED IN cell differentiation involved in embryonic placenta development (ortholog); extrinsic apoptotic signaling pathway (ortholog); hepatocyte apoptotic process (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); adenocarcinoma (ortholog); Breast Neoplasms (ortholog); FOUND IN apicolateral plasma membrane (ortholog); cell periphery (ortholog); cell-cell junction (ortholog) NW_004955458 178954 190310 - 102012164 AGCD01047108;AGCD01047109;AGCD01047110;GBCE01007276;GBDJ01019216;XM_005397487 XP_005397544 MODEL 10213275 protein-coding LOC106146863 uncharacterized LOC106146863 NW_004955499 1091484 1092388 + 106146863 AGCD01063317;GBDK01246141;XM_013505617 XP_013361071 MODEL 39132338 snrna U6 U6 spliceosomal RNA 8819788 protein-coding Lmod1 leiomodin 1 INVOLVED IN actin nucleation (ortholog); positive regulation of actin filament polymerization (ortholog); ASSOCIATED WITH autosomal dominant familial visceral neuropathy (ortholog); coronary artery disease (ortholog); endometriosis (ortholog); FOUND IN actin filament (ortholog); cytosol (ortholog); myofibril (ortholog) NW_004955406 37967098 38012908 - 102019980 AGCD01006581;AGCD01006582;GBDF01014788;XM_005375196 XP_005375253 MODEL 9005137 protein-coding S1pr4 sphingosine-1-phosphate receptor 4 INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); Neurodevelopmental Disorders (ortholog); RASopathy (ortholog); FOUND IN mitochondrion (ortholog); presynapse (ortholog) NW_004955495 5243797 5247649 - 102026125 AGCD01061987;GBBH01024899;XM_005405851 XP_005405908 MODEL 8930472 protein-coding Vcan versican ENCODES a protein that exhibits protein phosphatase binding (ortholog); protein tyrosine phosphatase activator activity (ortholog); INVOLVED IN axon regeneration (ortholog); glial cell migration (ortholog); heart development (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); basal cell carcinoma (ortholog); endometriosis (ortholog); FOUND IN cell surface (ortholog); collagen-containing extracellular matrix (ortholog); extracellular matrix (ortholog) NW_004955418 26967595 27078430 - 102004482 AGCD01019402;AGCD01019403;GBCE01044625;GBCQ01129494;XM_013513017 XP_013368471 MODEL 9040249 pseudo LOC102008670 40S ribosomal protein S13 pseudogene NW_004955441 317788 319866 + 102008670 AGCD01036700 MODEL 8766281 pseudo LOC102009085 beclin 1-associated autophagy-related key regulator pseudogene NW_004955427 20646973 20652239 + 102009085 AGCD01027412 MODEL 8748192 pseudo LOC102007514 COMM domain-containing protein 1-like NW_004955407 20893031 20899078 - 102007514 AGCD01007345 MODEL 8821371 pseudo LOC102015176 LYR motif-containing protein 1 pseudogene NW_004955456 15977550 15980397 - 102015176 AGCD01046681 MODEL 8977924 ncrna LOC102021171 uncharacterized LOC102021171 NW_004955436 4367993 4378045 - 102021171 AGCD01033661;GBCE01069603;XR_261754 MODEL 8854688 pseudo LOC102016945 calcyclin-binding protein pseudogene NW_004955433 16778181 16778853 - 102016945 AGCD01031803 MODEL 39132931 snrna U6 U6 spliceosomal RNA 9006201 ncrna LOC102009086 uncharacterized LOC102009086 NW_004955428 14583845 14601030 - 102009086 AGCD01027989;AGCD01027990;GBCB01109528;XR_261303 MODEL 8780747 protein-coding LOC102008677 deoxynucleotidyltransferase terminal-interacting protein 2-like NW_004955572 1393253 1395378 - 102008677 AGCD01074950;XM_013509439 XP_013364893 MODEL 9020004 protein-coding Hunk hormonally up-regulated Neu-associated kinase ENCODES a protein that exhibits protein kinase activity (ortholog); INVOLVED IN protein phosphorylation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); Familial Platelet Disorder with Associated Myeloid Malignancy (ortholog) NW_004955407 31439045 31555542 + 102015287 AGCD01007649;AGCD01007650;AGCD01007651;AGCD01007652;AGCD01007653;AGCD01007654;GBCE01063923;XM_013504110 XP_013359564 MODEL 8945162 ncrna LOC102015177 uncharacterized LOC102015177 NW_004955457 14027628 14069849 - 102015177 AGCD01047055;AGCD01047056;AGCD01047057;GBDF01125568;XR_001236405 MODEL 9038917 pseudo LOC102007194 metal-response element-binding transcription factor 2-like NW_004955407 20859491 20861983 - 102007194 AGCD01007345 MODEL 39132933 snrna U6 U6 spliceosomal RNA 9028822 protein-coding Scn9a sodium voltage-gated channel alpha subunit 9 ENCODES a protein that exhibits voltage-gated sodium channel activity (ortholog); INVOLVED IN action potential propagation (ortholog); behavioral response to formalin induced pain (ortholog); behavioral response to pain (ortholog); ASSOCIATED WITH absence epilepsy (ortholog); asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); node of Ranvier (ortholog) NW_004955449 7858156 8017569 + 102010648 AGCD01042004;AGCD01042005;AGCD01042006;AGCD01042007;GBBH01096669;XM_005393289 XP_005393346 MODEL 8914868 protein-coding LOC102012159 keratin-associated protein 11-1 NW_004955407 30616573 30617451 - 102012159 AGCD01007639;XM_005375656 XP_005375713 MODEL 8790725 protein-coding Tent5d terminal nucleotidyltransferase 5D ENCODES a protein that exhibits poly(A) RNA polymerase activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955529 720659 784609 + 102017157 AGCD01069654;AGCD01069655;AGCD01069656;GBDJ01353542;XM_005410070;XM_013507537;XM_013507538 XP_005410127;XP_013362991;XP_013362992 MODEL 8867938 protein-coding LOC102009091 late lactation protein B-like NW_004955513 2501589 2504529 + 102009091 AGCD01066880;GBBH01002386;XM_013506585 XP_013362039 MODEL 9013394 ncrna LOC102015180 uncharacterized LOC102015180 NW_004955409 37788920 37825885 + 102015180 AGCD01010533;AGCD01010534;AGCD01010535;GBDF01253472;XR_001232673;XR_001232674;XR_001232675;XR_259813 MODEL 39132959 snrna U6 U6 spliceosomal RNA 9018952 protein-coding Klf13 KLF transcription factor 13 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); negative regulation of erythrocyte differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 15q13.3 microdeletion syndrome (ortholog) NW_004955416 30087705 30137437 + 102018492 AGCD01017678;AGCD01017679;GBCQ01123785;XM_005381669;XM_005381670;XM_005381671;XM_005381672;XM_005381674;XM_013512596;XM_013512597 XP_005381726;XP_005381727;XP_005381728;XP_005381729;XP_005381731;XP_013368050;XP_013368051 MODEL 8836491 protein-coding LOC102024541 uncharacterized LOC102024541 NW_004955466 10751416 10758838 + 102024541 AGCD01051074;GBDF01119345;XM_005399200;XM_013521874;XR_001236768 XP_005399257;XP_013377328 MODEL 39131478 protein-coding S1PR5 sphingosine-1-phosphate receptor 5 8921665 protein-coding Dera deoxyribose-phosphate aldolase ENCODES a protein that exhibits deoxyribose-phosphate aldolase activity (ortholog); INVOLVED IN deoxyribonucleoside catabolic process (ortholog); PARTICIPATES IN pentose phosphate pathway; ribose 5-phosphate isomerase deficiency pathway; transaldolase deficiency pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955413 12571341 12682985 + 102006998 AGCD01013992;AGCD01013993;AGCD01013994;AGCD01013995;GBDF01053025;XM_005379023;XM_013511619 XP_005379080;XP_013367073 MODEL 9036098 ncrna LOC102012163 uncharacterized LOC102012163 NW_004955409 610554 611768 - 102012163 AGCD01009158;GBDF01126147;XR_259741 MODEL 10063798 ncrna LOC106149975 uncharacterized LOC106149975 NW_004955458 1973856 1978190 - 106149975 AGCD01047209;GBCQ01057482;XR_001236475 MODEL 8874073 protein-coding LOC102024927 olfactory receptor 7E24-like NW_004955495 779767 780746 + 102024927 AGCD01061653;XM_013505088 XP_013360542 MODEL 39132960 snrna U6 U6 spliceosomal RNA 9052463 protein-coding LOC102003250 transient receptor potential cation channel subfamily V member 5 NW_004955494 693654 721271 + 102003250 AGCD01061383;GBDF01039033;XM_005405380;XM_013504911 XP_005405437;XP_013360365 MODEL 9026124 ncrna LOC102009092 uncharacterized LOC102009092 NW_004955431 13020164 13023563 + 102009092 AGCD01030276;GBDF01210949;XR_261468 MODEL 8726863 pseudo LOC102018153 protein phosphatase 1A pseudogene NW_004955405 7689040 7690265 - 102018153 AGCD01004721 MODEL 8754871 ncrna LOC102012171 uncharacterized LOC102012171 NW_004955462 1256543 1258197 + 102012171 AGCD01049105;GBDF01021159;XR_263088 MODEL 39133434 snrna U4 U4 spliceosomal RNA 8974923 protein-coding Wsb2 WD repeat and SOCS box containing 2 NW_004955455 13313072 13324496 + 102020418 AGCD01046069;GBBH01140149;GBDI01126390;XM_005396538 XP_005396595 MODEL 8978265 pseudo LOC102005743 zinc finger protein 140-like NW_004955515 861668 865164 + 102005743 AGCD01067211;XM_005408920 MODEL 8941825 protein-coding LOC102019395 acylcarnitine hydrolase-like NW_004955484 9624869 9637807 - 102019395 AGCD01058424;GBCQ01037834;XM_005403710;XM_005403711;XM_013504017 XP_005403767;XP_005403768;XP_013359471 MODEL 8844075 protein-coding Spata2l spermatogenesis associated 2 like ASSOCIATED WITH autosomal recessive chronic granulomatous disease 4 (ortholog); Fanconi anemia (ortholog); Fanconi anemia complementation group A (ortholog) NW_004955541 3242380 3246562 - 102015892 AGCD01071440;GBDF01146693;XM_005411058 XP_005411115 MODEL 39133435 snrna U4 U4 spliceosomal RNA 8817378 ncrna LOC102013385 uncharacterized LOC102013385 NW_004955456 7020296 7021629 + 102013385 AGCD01046384;GBDF01208136;XR_262885 MODEL 8740215 protein-coding LOC102028628 olfactory receptor 6K6 ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955468 10620094 10621096 + 102028628 AGCD01052093;XM_013522345 XP_013377799 MODEL 8802784 protein-coding LOC102005749 tenascin-X-like NW_004955437 562600 578348 - 102005749 AGCD01034146;AGCD01034147;AGCD01034148;AGCD01034149;GBDI01324923;GBDK01430395;XM_013516899 XP_013372353 MODEL 8819561 protein-coding Unc5d unc-5 netrin receptor D INVOLVED IN axon guidance (ortholog); cell-cell adhesion via plasma-membrane adhesion molecules (ortholog); pyramidal neuron differentiation (ortholog); FOUND IN cell surface (ortholog) NW_004955463 11404164 11785100 + 102009809 AGCD01049845;AGCD01049846;AGCD01049847;AGCD01049848;GBDJ01327273;XM_013521490 XP_013376944 MODEL 8860508 protein-coding Wscd1 WSC domain containing 1 ENCODES a protein that exhibits sulfotransferase activity (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 25 (ortholog); Liver Neoplasms (ortholog); pre-malignant neoplasm (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955467 11642318 11684265 + 102030293 AGCD01051614;AGCD01051615;AGCD01051616;GBDJ01225220;XM_005399657;XM_005399659 XP_005399714;XP_005399716 MODEL 8900413 protein-coding LOC102023921 uncharacterized LOC102023921 NW_004955492 4798372 4799798 + 102023921 AGCD01060732;GBDF01021543;XM_005405018 XP_005405075 MODEL 8908127 protein-coding Klf14 KLF transcription factor 14 ENCODES a protein that exhibits chromatin binding (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN positive regulation of sphingolipid mediated signaling pathway (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Dyslipidemias (ortholog); Insulin Resistance (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955410 36891213 36932136 + 102030161 AGCD01011440;AGCD01011441;XM_013510501 XP_013365955 MODEL 39133436 snrna U4 U4 spliceosomal RNA 9065681 protein-coding LOC102013387 olfactory receptor 10A2-like NW_004955458 2450590 2451552 - 102013387 AGCD01047233;XM_005397241 XP_005397298 MODEL 10331628 ncrna LOC106149976 uncharacterized LOC106149976 NW_004955458 4823190 4826267 - 106149976 AGCD01047441;XR_001236476 MODEL 8822495 protein-coding Hus1 HUS1 checkpoint clamp component INVOLVED IN cellular response to ionizing radiation (ortholog); DNA damage checkpoint signaling (ortholog); DNA damage response (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN checkpoint clamp complex (ortholog); nucleus (ortholog) NW_004955456 5465180 5476380 + 102008597 AGCD01046330;GBCQ01154034;GBCQ01154045;XM_005396631 XP_005396688 MODEL 8990248 pseudo LOC102020323 homeobox protein PKNOX1 pseudogene NW_004955468 3756234 3757363 + 102020323 AGCD01051868 MODEL 8884636 pseudo LOC102009093 60S ribosomal protein L5-like NW_004955431 17585076 17587986 - 102009093 AGCD01030409 MODEL 8997435 protein-coding Prss22 serine protease 22 ENCODES a protein that exhibits peptidase activator activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN positive regulation of peptidase activity (ortholog); proteolysis (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN extracellular space (ortholog) NW_004955442 14618859 14623508 - 102018775 AGCD01037830;GBCE01133908;XM_005391410 XP_005391467 MODEL 39132339 snrna U6 U6 spliceosomal RNA 8919529 protein-coding Krt80 keratin 80 FOUND IN cytoplasm (ortholog); desmosome (ortholog); intermediate filament (ortholog) NW_004955547 2511235 2531631 - 102005752 AGCD01072283;GBBH01140251;XM_005411932;XM_013508497 XP_005411989;XP_013363951 MODEL 8999557 pseudo LOC102013388 calcium-transporting ATPase type 2C member 1 pseudogene NW_004955408 2427135 2428006 + 102013388 AGCD01008006 MODEL 8988319 protein-coding Znf32 zinc finger protein 32 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); FOUND IN nucleus (ortholog) NW_004955546 1475968 1481436 - 102009423 AGCD01072068;GBDJ01189416;XM_005411772;XM_005411774;XM_005411775;XM_013508409;XM_013508410 XP_005411829;XP_005411831;XP_005411832;XP_013363863;XP_013363864 MODEL 8846177 protein-coding Tmod3 tropomodulin 3 NW_004955409 2732042 2783966 - 102020427 AGCD01009217;AGCD01009218;AGCD01009219;GBCE01095255;XM_005376634 XP_005376691 MODEL 8906627 pseudo LOC102022495 leucine-rich repeat-containing protein 58 pseudogene NW_004955475 2731063 2732539 - 102022495 AGCD01054818 MODEL 9032656 ncrna LOC102023578 uncharacterized LOC102023578 NW_004955470 9804279 9808744 + 102023578 AGCD01052842;XR_263480;XR_263481 MODEL 9016102 pseudo LOC102015184 ornithine decarboxylase pseudogene NW_004955467 1607449 1608188 - 102015184 AGCD01051269 MODEL 8852395 protein-coding LOC102006087 vegetative cell wall protein gp1-like NW_004955450 9118960 9126357 + 102006087 AGCD01042585;GBBH01149209;XM_013518830 XP_013374284 MODEL 8710511 protein-coding Znf322 zinc finger protein 322 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN positive regulation of stem cell population maintenance (ortholog); regulation of DNA-templated transcription (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955483 243819 262593 + 102009841 AGCD01057604;AGCD01057605;GBBH01197926;XM_005403273 XP_005403330 MODEL 9040590 protein-coding Best2 bestrophin 2 ENCODES a protein that exhibits bicarbonate channel activity (ortholog); chloride channel activity (ortholog); intracellularly ligand-gated monoatomic ion channel activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); chloride transmembrane transport (ortholog); chloride transport (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); FOUND IN basolateral plasma membrane (ortholog); chloride channel complex (ortholog); cilium (ortholog) NW_004955415 31846053 31851628 + 102020907 AGCD01016698;GBCC01018119;XM_005381024 XP_005381081 MODEL 8904754 pseudo LOC102022501 olfactory receptor 1361-like NW_004955419 5358140 5359599 - 102022501 AGCD01019802 MODEL 9062199 ncrna LOC102008678 uncharacterized LOC102008678 NW_004955449 1311463 1320185 + 102008678 AGCD01041795;AGCD01041796;GBCB01051011;XR_001235820;XR_001235821;XR_262484 MODEL 9019310 ncrna LOC102005750 uncharacterized LOC102005750 NW_004955438 21332657 21334526 - 102005750 AGCD01035537;GBDK01039687;XR_261957 MODEL 8709056 protein-coding Pheta1 PH domain containing endocytic trafficking adaptor 1 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN endosome organization (ortholog); receptor recycling (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); FOUND IN clathrin-coated vesicle (ortholog); early endosome (ortholog); recycling endosome (ortholog) NW_004955482 8052534 8058004 - 102005711 AGCD01057499;AGCD01057500;GBBH01207880;GBCE01030281;XM_013503647 XP_013359101 MODEL 8895400 ncrna LOC102009847 uncharacterized LOC102009847 NW_004955487 8288681 8301499 - 102009847 AGCD01059432;AGCD01059433;GBDF01084799;XR_263988 MODEL 39133437 snrna U4 U4 spliceosomal RNA 9045011 protein-coding Unc79 unc-79 homolog, NALCN channel complex subunit INVOLVED IN adult behavior (ortholog); behavioral response to ethanol (ortholog); multicellular organism growth (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); autism spectrum disorder (ortholog); DICER1 syndrome (ortholog); FOUND IN plasma membrane (ortholog) NW_004955438 15575438 15825575 + 102006284 AGCD01035376;AGCD01035377;AGCD01035378;AGCD01035379;AGCD01035380;AGCD01035381;AGCD01035382;AGCD01035383;AGCD01035384;AGCD01035385;GBDF01189367;XM_005390346;XM_005390350;XM_013517282;XM_013517283;XM_013517284;XM_013517285;XM_013517286;XM_013517287;XM_013517288;XM_013517289 XP_005390403;XP_005390407;XP_013372736;XP_013372737;XP_013372738;XP_013372739;XP_013372740;XP_013372741;XP_013372742;XP_013372743 MODEL 8833984 protein-coding Nectin3 nectin cell adhesion molecule 3 ENCODES a protein that exhibits cell adhesion mediator activity (ortholog); cell adhesion molecule binding (ortholog); identical protein binding (ortholog); INVOLVED IN cell adhesion (ortholog); cell-cell adhesion (ortholog); cochlea morphogenesis (ortholog); ASSOCIATED WITH cataract (ortholog); Teratozoospermia (ortholog); FOUND IN adherens junction (ortholog); apical junction complex (ortholog); axon (ortholog) NW_004955427 11639942 11731910 + 102019088 AGCD01027192;AGCD01027193;AGCD01027194;GBDF01003170;XM_005386610 XP_005386667 MODEL 8915717 protein-coding Wscd2 WSC domain containing 2 ENCODES a protein that exhibits sulfotransferase activity (ortholog); ASSOCIATED WITH Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955455 9433628 9549862 + 102022566 AGCD01045921;AGCD01045922;AGCD01045923;GBBH01097863;GBCQ01173215;XM_013520454;XM_013520455 XP_013375908;XP_013375909 MODEL 8890791 pseudo LOC102018158 nascent polypeptide-associated complex subunit alpha-like NW_004955455 10593876 10627433 + 102018158 AGCD01045958;AGCD01045959 MODEL 8780887 protein-coding Lmod2 leiomodin 2 ENCODES a protein that exhibits actin binding (ortholog); actin monomer binding (ortholog); tropomyosin binding (ortholog); INVOLVED IN actin filament polymerization (ortholog); actin nucleation (ortholog); positive regulation of actin filament polymerization (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); dilated cardiomyopathy 1BB (ortholog); dilated cardiomyopathy 2G (ortholog); FOUND IN actin filament (ortholog); cardiac myofibril (ortholog); M band (ortholog) NW_004955479 5143430 5151096 + 102015197 AGCD01056340;GBCB01034433;XM_005402335 XP_005402392 MODEL 8958331 protein-coding Skap2 src kinase associated phosphoprotein 2 INVOLVED IN negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955410 28447073 28618450 - 102028940 AGCD01011250;AGCD01011251;AGCD01011252;AGCD01011253;AGCD01011254;GBDJ01316638;XM_005377444 XP_005377501 MODEL 39133438 snrna U4 U4 spliceosomal RNA 8786186 ncrna LOC102009094 uncharacterized LOC102009094 NW_004955432 20999224 21001060 + 102009094 AGCD01031213;GBDF01304667;XR_261541 MODEL 39131503 protein-coding SPATA3 spermatogenesis associated 3 8794885 protein-coding LOC102019396 ATPase family AAA domain-containing protein 3 NW_004955486 9344108 9360974 - 102019396 AGCD01059177;GBDI01218980;XM_005404214;XM_005404216;XM_005404218 XP_005404271;XP_005404273;XP_005404275 MODEL 8760468 protein-coding Prss23 serine protease 23 ASSOCIATED WITH Coats disease (ortholog); COVID-19 (ortholog); exudative vitreoretinopathy (ortholog); FOUND IN nucleus (ortholog) NW_004955414 6202383 6213521 - 102007985 AGCD01014913;AGCD01014914;GBCQ01178355;XM_005379735;XM_005379736 XP_005379792;XP_005379793 MODEL 8734127 protein-coding Krt82 keratin 82 FOUND IN keratin filament (ortholog) NW_004955547 2744554 2755794 - 102009109 AGCD01072294;GBDJ01171921;XM_005411941 XP_005411998 MODEL 8718973 pseudo LOC102028633 olfactory receptor 1E5-like NW_004955481 7646 8650 + 102028633 AGCD01056774 MODEL 8924757 protein-coding Tmod4 tropomodulin 4 ENCODES a protein that exhibits tropomyosin binding (ortholog); ASSOCIATED WITH Dravet syndrome (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN striated muscle thin filament (ortholog) NW_004955588 530288 535789 - 102026587 AGCD01076115;GBCB01010377;XM_005414500;XM_005414501;XM_013509908 XP_005414557;XP_005414558;XP_013365362 MODEL 8739192 protein-coding LOC102024543 high affinity immunoglobulin gamma Fc receptor I-like NW_004955413 924533 950278 - 102024543 AGCD01013495;AGCD01013496;AGCD01013497;AGCD01013498;GBDK01121288;XM_005378716 XP_005378773 MODEL 39132962 snrna U6 U6 spliceosomal RNA 8730602 protein-coding LOC102003251 olfactory receptor 4C3-like NW_004955422 242830 243737 - 102003251 AGCD01022401;XM_013513877 XP_013369331 MODEL 8876351 ncrna LOC102007199 uncharacterized LOC102007199 NW_004955409 10077543 10110578 - 102007199 AGCD01009457;AGCD01009458;GBDF01260753;XR_001232639;XR_001232640;XR_259766 MODEL 8741944 pseudo LOC102028634 THO complex subunit 4 pseudogene NW_004955418 16244601 16248925 - 102028634 AGCD01019122 MODEL 8803770 pseudo LOC102022878 glutathione peroxidase 1-like NW_004955453 11001065 11001657 + 102022878 AGCD01044797 MODEL 8878409 protein-coding Best3 bestrophin 3 ENCODES a protein that exhibits chloride channel activity (ortholog); intracellularly calcium-gated chloride channel activity (ortholog); ligand-gated monoatomic anion channel activity (ortholog); INVOLVED IN inorganic anion transport (ortholog); negative regulation of monoatomic ion transport (ortholog); ASSOCIATED WITH aortic dissection (ortholog); atrial fibrillation (ortholog); FOUND IN plasma membrane (ortholog) NW_004955405 9957595 10031193 - 102026284 AGCD01004801;AGCD01004802;GBDI01011038;XM_013517529;XM_013517531 XP_013372983;XP_013372985 MODEL 10265557 ncrna LOC106149977 uncharacterized LOC106149977 NW_004955458 1257253 1258263 - 106149977 AGCD01047172;GBCQ01085023;XR_001236477 MODEL 8876881 protein-coding Tmpo thymopoietin ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amyloidosis (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); cardiomyopathy (ortholog); FOUND IN chromatin (ortholog); nuclear envelope (ortholog); nuclear inner membrane (ortholog) NW_004955405 34526420 34556740 + 102029699 AGCD01005375;AGCD01005376;GBBH01064996;GBCC01002099;XM_013518574;XM_013518576;XM_013518578 XP_013374028;XP_013374030;XP_013374032 MODEL 39132340 snrna U6 U6 spliceosomal RNA 8773276 protein-coding LOC102018160 olfactory receptor 6C70-like NW_004955458 3167363 3168304 + 102018160 AGCD01047276;XM_013520812 XP_013376266 MODEL 9056976 protein-coding Wt1 WT1 transcription factor ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN adrenal cortex formation (ortholog); adrenal gland development (ortholog); apoptotic process (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); acute promyelocytic leukemia (ortholog); Alzheimer's disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955476 10464688 10504473 - 102010054 AGCD01055423;GBDJ01006823;GBDJ01006829;XM_005401901;XM_013503000;XM_013503001;XM_013503002 XP_005401958;XP_013358454;XP_013358455;XP_013358456 MODEL 10140023 ncrna LOC106149978 uncharacterized LOC106149978 NW_004955458 2108409 2134724 + 106149978 AGCD01047214;AGCD01047215;GBDI01150316;XR_001236483 MODEL 10078649 ncrna LOC106149132 uncharacterized LOC106149132 NW_004955437 13267792 13274320 - 106149132 AGCD01034655;GBDJ01307173;XR_001235095 MODEL 8704011 pseudo LOC102016946 DNA polymerase epsilon subunit 3 pseudogene NW_004955521 4203300 4203697 + 102016946 AGCD01068255 MODEL 8914388 ncrna LOC102023580 uncharacterized LOC102023580 NW_004955471 5893827 5894991 + 102023580 AGCD01053115;GBDF01006377;XR_263525 MODEL 39133439 snrna U4 U4 spliceosomal RNA 8928723 pseudo LOC102016948 putative 60S ribosomal protein L37a NW_004955524 2316358 2316655 + 102016948 AGCD01068810 MODEL 8992318 ncrna LOC102005756 uncharacterized LOC102005756 NW_004955402 5429973 5443199 - 102005756 AGCD01000135;XR_001236384;XR_259029 MODEL 9050654 protein-coding LOC102022507 acyl carrier protein, mitochondrial NW_004955493 2134657 2139543 - 102022507 AGCD01060927;GBCC01013347;GBCE01030161;XM_013504895 XP_013360349 MODEL 8780380 protein-coding Ppp1r12b protein phosphatase 1 regulatory subunit 12B ASSOCIATED WITH breast lobular carcinoma (ortholog); Breast Neoplasms (ortholog); Congenital Infantile Lactic Acidosis (ortholog); FOUND IN A band (ortholog); Z disc (ortholog) NW_004955406 38405297 38636503 + 102024760 AGCD01006601;AGCD01006602;AGCD01006603;AGCD01006604;AGCD01006605;AGCD01006606;AGCD01006607;AGCD01006608;AGCD01006609;GBCB01001973;XM_005375213;XM_005375215;XM_005375216;XM_005375218;XM_005375220;XM_005375223;XM_013522381;XM_013522389;XM_013522394;XM_013522404;XR_001236900;XR_001236901;XR_259519;XR_259520 XP_005375270;XP_005375272;XP_005375273;XP_005375275;XP_005375277;XP_005375280;XP_013377835;XP_013377843;XP_013377848;XP_013377858 MODEL 8958301 protein-coding LOC102026952 uncharacterized LOC102026952 NW_004955410 10391827 10431004 + 102026952 AGCD01010795;GBCE01106188;GBDK01327077;XM_013510575;XM_013510576;XM_013510577 XP_013366029;XP_013366030;XP_013366031 MODEL 9058100 ncrna LOC102020324 uncharacterized LOC102020324 NW_004955469 5243140 5244995 - 102020324 AGCD01052346;GBDF01148382;XR_263432 MODEL 8878886 protein-coding Gpr15 G protein-coupled receptor 15 ENCODES a protein that exhibits coreceptor activity (ortholog); G protein-coupled receptor activity (ortholog); virus receptor activity (ortholog); INVOLVED IN angiogenesis (ortholog); G protein-coupled receptor signaling pathway (ortholog); symbiont entry into host cell (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); plasma membrane (ortholog) NW_004955427 115513 137557 + 102015745 AGCD01026808;GBDF01166895;XM_005386275;XM_005386277;XR_001234404;XR_001234405 XP_005386332;XP_005386334 MODEL 9050824 ncrna LOC102003254 uncharacterized LOC102003254 NW_004955423 19319841 19322762 - 102003254 AGCD01023889;GBDF01056704;XR_260982 MODEL 8953769 protein-coding Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 ENCODES a protein that exhibits DNA binding (ortholog); histone ubiquitin ligase activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN base-excision repair (ortholog); circadian regulation of gene expression (ortholog); negative regulation of mitochondrial fusion (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH Atkin Syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955475 550643 671771 - 102017655 AGCD01054700;AGCD01054701;AGCD01054702;AGCD01054703;AGCD01054704;GBCQ01058546;GBCQ01101761;XM_013502813;XM_013502814;XM_013502815;XM_013502816;XM_013502817;XM_013502819 XP_013358267;XP_013358268;XP_013358269;XP_013358270;XP_013358271;XP_013358273 MODEL 8731827 protein-coding Tep1 telomerase associated protein 1 ENCODES a protein that exhibits enzyme binding (ortholog); p53 binding (ortholog); RNA binding (ortholog); INVOLVED IN telomere maintenance via recombination (ortholog); telomere maintenance via telomerase (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); intrahepatic cholangiocarcinoma (ortholog); Lung Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nuclear matrix (ortholog); ribonucleoprotein complex (ortholog) NW_004955550 1162067 1215746 - 102025294 AGCD01072552;AGCD01072553;AGCD01072554;AGCD01072555;AGCD01072556;GBDI01225734;GBDI01225741;XM_013508569 XP_013364023 MODEL 8877987 protein-coding LOC102013390 uncharacterized LOC102013390 NW_004955409 845678 869527 + 102013390 AGCD01009168;GBDI01372716;XM_005376615;XM_005376617;XM_005376619;XM_005376621;XM_013510467;XM_013510468;XM_013510469;XM_013510470;XM_013510471;XM_013510472;XR_001232685;XR_001232686;XR_001232687 XP_005376672;XP_005376674;XP_005376676;XP_005376678;XP_013365921;XP_013365922;XP_013365923;XP_013365924;XP_013365925;XP_013365926 MODEL 8972957 protein-coding S1pr5 sphingosine-1-phosphate receptor 5 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN regulation of neuron differentiation (ortholog); PARTICIPATES IN sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); Experimental Diabetes Mellitus (ortholog); familial hypercholesterolemia (ortholog); FOUND IN presynapse (ortholog) NW_004955495 1717549 1722257 - 102007029 AGCD01061714;AGCD01061715;AGCD01061716;GBDI01108035;XM_013505132 XP_013360586 MODEL 8877540 ncrna LOC102024929 uncharacterized LOC102024929 NW_004955424 17064537 17116592 - 102024929 AGCD01024756;GBCB01002906;XR_001234138;XR_001234139;XR_261072;XR_261073 MODEL 8712247 protein-coding LOC102021172 SLA class II histocompatibility antigen, DQ haplotype D alpha chain-like NW_004955437 1350477 1355574 + 102021172 AGCD01034204;GBDJ01016936;XM_005389453 XP_005389510 MODEL 39132341 snrna U6 U6 spliceosomal RNA 8894783 ncrna LOC102018165 uncharacterized LOC102018165 NW_004955409 31850420 31855944 - 102018165 AGCD01010341;AGCD01010342;GBDF01146276;XR_259800 MODEL 9007979 ncrna LOC102019398 uncharacterized LOC102019398 NW_004955489 1974116 1979078 + 102019398 AGCD01059856;GBDF01111748;XR_264014;XR_264015 MODEL 8868490 protein-coding Gpr150 G protein-coupled receptor 150 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955418 16942505 16945580 - 102029294 AGCD01019138;AGCD01019139;GBCE01038451;XM_005382348 XP_005382405 MODEL 8998179 protein-coding Klf15 KLF transcription factor 15 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cardiac muscle hypertrophy in response to stress (ortholog); cellular response to endothelin (ortholog); glial cell differentiation (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); aortic aneurysm (ortholog); Cardiac Fibrosis (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955421 21609709 21618920 - 102019071 AGCD01022112;GBCB01039022;GBCB01039023;XM_013513752 XP_013369206 MODEL 39133440 snrna U4 U4 spliceosomal RNA 39132964 snrna U6 U6 spliceosomal RNA 8919157 ncrna LOC102021174 uncharacterized LOC102021174 NW_004955437 6016459 6023729 + 102021174 AGCD01034413;GBDF01226129;XR_001235072;XR_001235073 MODEL 10061161 ncrna LOC106150346 uncharacterized LOC106150346 NW_004955473 10878402 10891431 + 106150346 AGCD01054117;GBDJ01233778;XR_001237108 MODEL 8977057 pseudo LOC102017808 DEP domain-containing protein 1B-like NW_004955434 20258595 20259982 - 102017808 AGCD01032614 MODEL 8988880 protein-coding Unc80 unc-80 homolog, NALCN channel complex subunit ASSOCIATED WITH autism spectrum disorder (ortholog); brain disease (ortholog); Developmental Disabilities (ortholog); FOUND IN plasma membrane (ortholog); sodium channel complex (ortholog) NW_004955457 5445255 5649286 - 102030603 AGCD01046818;AGCD01046819;GBDF01135718;XM_005396950;XM_005396951;XM_005396953;XM_013520683 XP_005397007;XP_005397008;XP_005397010;XP_013376137 MODEL 8923121 pseudo LOC102022881 40S ribosomal protein S12 pseudogene NW_004955454 2062707 2065137 + 102022881 AGCD01045006 MODEL 8933465 protein-coding Pheta2 PH domain containing endocytic trafficking adaptor 2 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN endosome organization (ortholog); receptor recycling (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); COVID-19 (ortholog); FOUND IN clathrin-coated vesicle (ortholog); early endosome (ortholog); recycling endosome (ortholog) NW_004955413 27475658 27480879 + 102005791 AGCD01014508;AGCD01014509;GBDF01082922;XM_005379400;XM_005379401;XM_005379402;XM_005379403;XM_013511581;XM_013511582 XP_005379457;XP_005379458;XP_005379459;XP_005379460;XP_013367035;XP_013367036 MODEL 39133441 snrna U4 U4 spliceosomal RNA 8798804 protein-coding LOC102020325 uncharacterized LOC102020325 NW_004955414 15650867 15654793 - 102020325 AGCD01015187;GBDF01003766;XM_005379874;XR_001233063 XP_005379931 MODEL 8774719 ncrna LOC102022882 uncharacterized LOC102022882 NW_004955407 27667270 27669931 - 102022882 AGCD01007555;GBDF01057641;XR_259590 MODEL 8767659 protein-coding Spata3 spermatogenesis associated 3 ASSOCIATED WITH Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog); FOUND IN sperm flagellum (ortholog) NW_004955453 4435819 4453138 - 102007732 AGCD01044691;GBDF01011046;XM_013519989;XM_013519990;XR_001236193;XR_001236194 XP_013375443;XP_013375444 MODEL 39133443 snrna U4 U4 spliceosomal RNA 10384599 protein-coding LOC106149133 transmembrane protein 217-like NW_004955437 5903549 5925459 + 106149133 AGCD01034404;AGCD01034405;GBDF01011018;XM_013517045;XM_013517046 XP_013372499;XP_013372500 MODEL 10118803 protein-coding LOC106149979 translation initiation factor IF-2-like NW_004955459 2332304 2333294 + 106149979 AGCD01047988;GBCQ01090380;XM_013521050 XP_013376504 MODEL 8921555 pseudo LOC102024932 olfactory receptor 8S1-like NW_004955500 7243602 7244532 - 102024932 AGCD01063911 MODEL 8838639 protein-coding LOC102024546 zinc finger protein 420 NW_004955468 1759716 1837958 + 102024546 AGCD01051780;AGCD01051781;AGCD01051782;GBDF01277928;XM_005399882;XM_005399883;XM_013522305;XM_013522306;XM_013522307;XM_013522308;XM_013522309;XM_013522310;XM_013522311;XM_013522312;XM_013522313;XM_013522314;XM_013522315 XP_005399939;XP_005399940;XP_013377759;XP_013377760;XP_013377761;XP_013377762;XP_013377763;XP_013377764;XP_013377765;XP_013377766;XP_013377767;XP_013377768;XP_013377769 MODEL 8968474 protein-coding Scnm1 sodium channel modifier 1 ENCODES a protein that exhibits enzyme binding (ortholog); ASSOCIATED WITH orofaciodigital syndrome XIX (ortholog) NW_004955588 526986 529774 + 102024628 AGCD01076115;GBDF01047456;XM_005414493 XP_005414550 MODEL 39132343 snrna U6 U6 spliceosomal RNA 8901800 pseudo LOC102007517 swi5-dependent recombination DNA repair protein 1 homolog pseudogene NW_004955408 24197900 24198617 + 102007517 AGCD01008599 MODEL 8816210 protein-coding Vcf1 VCP nuclear cofactor family member 1 ASSOCIATED WITH congenital disorder of glycosylation type IIg (ortholog); genetic disease (ortholog) NW_004955553 230193 251322 - 102029906 AGCD01072849;AGCD01072850;AGCD01072851;GBBH01208710;XM_005412216 XP_005412273 MODEL 10201643 protein-coding Spata31g1 SPATA31 subfamily G member 1 ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog) NW_004958072 16 1146 + 106147709 AGCD01081468;GBCB01053674;GBDF01010963;XM_013510256 XP_013365710 MODEL 8962981 pseudo LOC102024935 uncharacterized protein C11orf57 pseudogene NW_004955427 21819541 21820599 - 102024935 AGCD01027459;AGCD01027460 MODEL 39132966 snrna U6 U6 spliceosomal RNA 8941054 protein-coding Sgpp1 sphingosine-1-phosphate phosphatase 1 ENCODES a protein that exhibits sphingosine-1-phosphate phosphatase activity (ortholog); INVOLVED IN ER to Golgi ceramide transport (ortholog); extrinsic apoptotic signaling pathway (ortholog); intrinsic apoptotic signaling pathway (ortholog); PARTICIPATES IN sphingosine 1-phosphate signaling pathway; FOUND IN actin cytoskeleton (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955466 6075507 6103739 + 102019255 AGCD01050906;AGCD01050907;GBDF01223287;XM_013522009 XP_013377463 MODEL 8800159 protein-coding Derl1 derlin 1 ENCODES a protein that exhibits ATPase binding (ortholog); identical protein binding (ortholog); MHC class I protein binding (ortholog); INVOLVED IN cellular response to misfolded protein (ortholog); cellular response to unfolded protein (ortholog); endoplasmic reticulum unfolded protein response (ortholog); ASSOCIATED WITH Stevens-Johnson syndrome (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN Derlin-1 retrotranslocation complex (ortholog); Derlin-1-VIMP complex (ortholog); early endosome (ortholog) NW_004955540 1918230 1944186 - 102025511 AGCD01071308;GBCE01054838;XM_005410910 XP_005410967 MODEL 10115528 ncrna LOC106150347 uncharacterized LOC106150347 NW_004955473 2713081 2793520 - 106150347 AGCD01053907;XR_001237110;XR_001237111 MODEL 8701260 pseudo LOC102015185 60S acidic ribosomal protein P0 pseudogene NW_004955467 10206250 10209516 - 102015185 AGCD01051553 MODEL 10328600 protein-coding LOC106146864 myristoylated alanine-rich C-kinase substrate-like NW_004955500 4995694 4996629 + 106146864 AGCD01063821;GBCE01021819;GBDF01021264;XM_013505632 XP_013361086 MODEL 8906697 protein-coding LOC102023925 spermatogenesis-associated protein 31E1-like NW_004955494 118777 122555 - 102023925 AGCD01061355;XM_013504912 XP_013360366 MODEL 8744019 protein-coding LOC102006090 neutrophil cationic peptide 2-like NW_004955403 53736552 53738672 + 102006090 AGCD01003071;GBDF01020160;XM_005373838 XP_005373895 MODEL 9032575 protein-coding Unc93a unc-93 homolog A FOUND IN plasma membrane (ortholog) NW_004955439 14783644 14823585 + 102020611 AGCD01035986;AGCD01035987;GBCQ01127757;XM_013517419;XM_013517420;XM_013517421;XM_013517422;XM_013517423;XM_013517424;XM_013517425;XM_013517426;XM_013517427;XM_013517429 XP_013372873;XP_013372874;XP_013372875;XP_013372876;XP_013372877;XP_013372878;XP_013372879;XP_013372880;XP_013372881;XP_013372883 MODEL 8760446 protein-coding Spata31h1 SPATA31 subfamily H member 1 ASSOCIATED WITH Tatton-Brown-Rahman syndrome (ortholog) NW_004955469 9495012 9525267 + 102006899 AGCD01052504;AGCD01052505;GBDF01248600;XM_005400509 XP_005400566 MODEL 8852104 protein-coding Hvcn1 hydrogen voltage gated channel 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); voltage-gated monoatomic cation channel activity (ortholog); INVOLVED IN cellular response to pH (ortholog); cellular response to zinc ion (ortholog); positive regulation of superoxide anion generation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); middle cerebral artery infarction (ortholog); FOUND IN apical plasma membrane (ortholog); membrane (ortholog); phagocytic vesicle membrane (ortholog) NW_004955482 7529009 7563273 - 102025007 AGCD01057474;AGCD01057475;GBBH01034214;XM_005403162;XM_005403163;XM_013503672;XM_013503673;XM_013503674 XP_005403219;XP_005403220;XP_013359126;XP_013359127;XP_013359128 MODEL 8734318 pseudo LOC102012173 60S ribosomal protein L39 pseudogene NW_004955463 13487897 13488102 + 102012173 AGCD01049868;XM_005398412 MODEL 9068001 protein-coding Tepsin TEPSIN adaptor related protein complex 4 accessory protein ENCODES a protein that exhibits protein-containing complex binding (ortholog); FOUND IN AP-4 adaptor complex (ortholog); coated vesicle membrane (ortholog); cytoplasm (ortholog) NW_004955506 1773560 1781467 + 102008335 AGCD01065273;GBDF01127350;XM_005407286;XM_005407287;XM_005407288;XM_005407290;XM_005407293;XM_005407294;XM_005407295;XM_013506031;XM_013506032;XM_013506033;XM_013506034;XM_013506035 XP_005407343;XP_005407344;XP_005407345;XP_005407347;XP_005407350;XP_005407351;XP_005407352;XP_013361485;XP_013361486;XP_013361487;XP_013361488;XP_013361489 MODEL 8732521 ncrna LOC102023581 uncharacterized LOC102023581 NW_004955414 33150630 33154924 + 102023581 AGCD01015799;GBDF01055488;XR_001233126;XR_001233127;XR_260226 MODEL 39133445 snrna U4 U4 spliceosomal RNA 9037713 protein-coding LOC102015189 olfactory receptor 52W1 ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog) NW_004955414 21944401 21945366 + 102015189 AGCD01015438;XM_005380116 XP_005380173 MODEL 8834817 pseudo LOC102018166 serine-threonine kinase receptor-associated protein-like NW_004955409 35958599 35960059 + 102018166 AGCD01010437 MODEL 8893386 pseudo LOC102028638 uncharacterized protein C12orf40 pseudogene NW_004955484 2451549 2456059 - 102028638 AGCD01058116 MODEL 8895307 pseudo LOC102007200 actin, cytoplasmic 2-like NW_004955409 20791291 20792243 + 102007200 AGCD01009930 MODEL 8772359 protein-coding LOC102019399 left-right determination factor 1-like NW_004955489 156460 160630 - 102019399 AGCD01059780;AGCD01059781;GBDJ01029000;GBDJ01388107;XM_013504465 XP_013359919 MODEL 8964357 pseudo LOC102023584 WW domain-binding protein 11 pseudogene NW_004955473 2379581 2381523 + 102023584 AGCD01053901 MODEL 8807808 pseudo LOC102024551 ADP-ribosylation factor-like protein 2-binding protein pseudogene NW_004955469 9911436 9913395 + 102024551 AGCD01052520 MODEL 8871668 ncrna LOC102021181 uncharacterized LOC102021181 NW_004955561 1723855 1736998 + 102021181 AGCD01073864;GBDF01047777;XR_001232357 MODEL 8765377 protein-coding LOC102026960 olfactory receptor 150-like NW_004955412 25004436 25005383 + 102026960 AGCD01013133;XM_005378645 XP_005378702 MODEL 39133446 snrna U4 U4 spliceosomal RNA 8833960 pseudo LOC102017809 LIM/homeobox protein Lhx2 pseudogene NW_004955529 937279 938433 + 102017809 AGCD01069660 MODEL 8734061 protein-coding Ppp1r12c protein phosphatase 1 regulatory subunit 12C NW_004955567 1058676 1072555 + 102005426 AGCD01074457;AGCD01074458;GBCE01055419;GBDJ01084720;XM_013509250;XM_013509251;XM_013509252;XM_013509253;XM_013509254 XP_013364704;XP_013364705;XP_013364706;XP_013364707;XP_013364708 MODEL 8832321 pseudo LOC102013392 ribosomal L1 domain-containing protein 1 pseudogene NW_004955409 26666765 26667942 - 102013392 AGCD01010196 MODEL 8721708 protein-coding Znf326 zinc finger protein 326 ENCODES a protein that exhibits DNA binding (ortholog); RNA polymerase II complex binding (ortholog); zinc ion binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); regulation of DNA-templated transcription elongation (ortholog); regulation of RNA splicing (ortholog); FOUND IN DBIRD complex (ortholog); intracellular membrane-bounded organelle (ortholog); nuclear matrix (ortholog) NW_004955423 4145169 4178409 - 102006147 AGCD01023529;GBDK01281590;XM_005385083 XP_005385140 MODEL 8951094 ncrna LOC102023590 uncharacterized LOC102023590 NW_004955416 31600128 31619543 - 102023590 AGCD01017765;AGCD01017766;GBDF01122136;XR_001233369;XR_001233370;XR_001233371 MODEL 39133457 snrna U4 U4 spliceosomal RNA 8986910 pseudo LOC102009848 transcription elongation factor B polypeptide 1 pseudogene NW_004955489 234222 234732 + 102009848 AGCD01059787 MODEL 8702277 protein-coding Krt84 keratin 84 ENCODES a protein that exhibits structural constituent of skin epidermis (ortholog); INVOLVED IN regulation of keratinocyte differentiation (ortholog); FOUND IN intermediate filament cytoskeleton (ortholog); keratin filament (ortholog) NW_004955547 2729046 2737142 - 102008577 AGCD01072294;XM_005411940;XM_013508447 XP_005411997;XP_013363901 MODEL 8923470 protein-coding Gpr151 G protein-coupled receptor 151 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); identical protein binding (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); regulation of synaptic vesicle exocytosis (ortholog); response to acidic pH (ortholog); ASSOCIATED WITH essential tremor (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cholinergic synapse (ortholog); presynaptic membrane (ortholog); synaptic vesicle membrane (ortholog) NW_004955415 7592958 7596586 + 102014238 AGCD01016046;XM_005380667 XP_005380724 MODEL 8953086 ncrna LOC102023591 uncharacterized LOC102023591 NW_004955479 8676663 8679973 + 102023591 AGCD01056451;GBDF01304727;XR_263737 MODEL 39133458 snrna U4 U4 spliceosomal RNA 8829960 protein-coding Klf16 KLF transcription factor 16 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN G protein-coupled dopamine receptor signaling pathway (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH cyclic hematopoiesis (ortholog); Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog) NW_004955495 6178565 6189469 + 102014149 AGCD01062056;GBCE01008921;GBDK01194291;XM_013505274 XP_013360728 MODEL 10208788 ncrna LOC106149980 uncharacterized LOC106149980 NW_004955459 1248910 1282515 - 106149980 AGCD01047965;AGCD01047966;GBDF01224976;XR_001236484 MODEL 8767056 protein-coding Znf329 zinc finger protein 329 NW_004955584 885269 897940 - 102015259 AGCD01075967;GBDK01305699;XM_005414382;XM_005414383 XP_005414439;XP_005414440 MODEL 39131545 protein-coding GPR151 G protein-coupled receptor 151 8907599 protein-coding Ski SKI proto-oncogene ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN anterior/posterior axis specification (ortholog); bone morphogenesis (ortholog); camera-type eye development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH aortic aneurysm (ortholog); ARTERIAL DISSECTION (ortholog); autism spectrum disorder (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nuclear body (ortholog) NW_004955486 8857693 8921821 - 102008948 AGCD01059156;GBCC01038296;GBCE01052647;XM_005404174 XP_005404231 MODEL 8973894 protein-coding LOC102009095 carboxylesterase 1D-like NW_004955433 13464493 13497375 - 102009095 AGCD01031692;GBCQ01008179;XM_005388331;XM_005388332 XP_005388388;XP_005388389 MODEL 10209618 ncrna LOC106149981 uncharacterized LOC106149981 NW_004955459 4786821 4823661 + 106149981 AGCD01048030;GBBH01099677;XR_001236485 MODEL 8706591 protein-coding Klf17 KLF transcription factor 17 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN gamete generation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955537 3637825 3648078 + 102013338 AGCD01070970;AGCD01070971;GBDF01085578;XM_005410712 XP_005410769 MODEL 39133565 mirna MIR29C microRNA 29c 8893974 protein-coding LOC102020326 olfactory receptor 51A7 ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); delta beta-thalassemia (ortholog) NW_004955414 20512630 20513568 + 102020326 AGCD01015377;XM_005380059 XP_005380116 MODEL 8928253 protein-coding Taf10 TATA-box binding protein associated factor 10 ENCODES a protein that exhibits DNA binding (ortholog); enzyme binding (ortholog); histone acetyltransferase activity (ortholog); INVOLVED IN allantois development (ortholog); apoptotic process (ortholog); DNA-templated transcription initiation (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH cardiomyopathy (ortholog); dilated cardiomyopathy (ortholog); familial hypertrophic cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); male germ cell nucleus (ortholog); nucleoplasm (ortholog) NW_004955414 22322954 22324412 - 102027062 AGCD01015452;AGCD01015453;GBBH01001860;GBDF01006506;XM_005380163 XP_005380220 MODEL 8979103 ncrna LOC102006092 uncharacterized LOC102006092 NW_004955405 12203636 12228952 - 102006092 AGCD01004849;GBDK01148852;XR_001235355;XR_001235356;XR_001235357;XR_001235358 MODEL 8814544 protein-coding Gpr152 G protein-coupled receptor 152 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Congenital Stationary Night Blindness 2B (ortholog); immunodeficiency 90 (ortholog) NW_004955422 18029704 18034051 + 102018296 AGCD01022935;AGCD01022936;GBDI01248327;XM_005384329;XM_013513937 XP_005384386;XP_013369391 MODEL 8920769 protein-coding Hyal1 hyaluronidase 1 ENCODES a protein that exhibits chondroitin hydrolase activity (ortholog); hyalurononglucosaminidase activity (ortholog); virus receptor activity (ortholog); INVOLVED IN cartilage development (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); cellular response to interleukin-1 (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytoplasmic vesicle (ortholog); extracellular space (ortholog); hyaluranon cable (ortholog) NW_004955532 2113016 2116093 - 102029441 AGCD01070218;GBDI01261298;XM_005410257 XP_005410314 MODEL 126903060 mirna MIR301A microRNA 301a 8815055 protein-coding Lmod3 leiomodin 3 ENCODES a protein that exhibits actin monomer binding (ortholog); tropomyosin binding (ortholog); INVOLVED IN actin nucleation (ortholog); positive regulation of skeletal muscle fiber development (ortholog); skeletal muscle fiber development (ortholog); ASSOCIATED WITH genetic disease (ortholog); nemaline myopathy 10 (ortholog); FOUND IN A band (ortholog); cytoplasm (ortholog); M band (ortholog) NW_004955421 18728993 18744326 + 102011670 AGCD01022052;AGCD01022053;GBCB01006122;XM_005383807;XM_005383808 XP_005383864;XP_005383865 MODEL 8990427 protein-coding Nectin4 nectin cell adhesion molecule 4 ENCODES a protein that exhibits identical protein binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN negative regulation of natural killer cell mediated cytotoxicity (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); Ectodermal Dysplasia-Syndactyly Syndrome 1 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN adherens junction (ortholog); plasma membrane (ortholog) NW_004955468 12841369 12858331 - 102025897 AGCD01052189;GBCQ01123131;XM_005400235;XM_005400236;XM_013522348;XM_013522349 XP_005400292;XP_005400293;XP_013377802;XP_013377803 MODEL 8770267 ncrna LOC102006093 uncharacterized LOC102006093 NW_004955452 11238563 11263569 + 102006093 AGCD01044333;GBBH01084072;XR_001236059;XR_001236060;XR_001236061;XR_001236062;XR_262679 MODEL 8815130 protein-coding Terb1 telomere repeat binding bouquet formation protein 1 INVOLVED IN double-strand break repair involved in meiotic recombination (ortholog); homologous chromosome pairing at meiosis (ortholog); meiotic attachment of telomere to nuclear envelope (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); azoospermia (ortholog); cataract 5 multiple types (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear envelope (ortholog); nuclear inner membrane (ortholog) NW_004955433 23290030 23332886 - 102016510 AGCD01031957;GBDF01160139;XM_013516114;XM_013516115;XM_013516116;XM_013516117 XP_013371568;XP_013371569;XP_013371570;XP_013371571 MODEL 8914996 protein-coding Tmppe transmembrane protein with metallophosphoesterase domain ASSOCIATED WITH genetic disease (ortholog); GM1 gangliosidosis (ortholog); GM1 gangliosidosis type 1 (ortholog) NW_004955421 342631 346581 - 102016602 AGCD01021557;XM_005383634 XP_005383691 MODEL 8746309 protein-coding Scnn1a sodium channel epithelial 1 subunit alpha ENCODES a protein that exhibits actin binding (ortholog); ligand-gated sodium channel activity (ortholog); sodium channel activity (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); cellular response to aldosterone (ortholog); intracellular sodium ion homeostasis (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive pseudohypoaldosteronism type 1 (ortholog); bronchiectasis 1 (ortholog); FOUND IN acrosomal vesicle (ortholog); apical plasma membrane (ortholog); ciliary membrane (ortholog) NW_004955413 4000083 4023596 - 102014033 AGCD01013591;AGCD01013592;GBCE01000261;XM_005378765;XM_005378766 XP_005378822;XP_005378823 MODEL 8785322 protein-coding LOC102022508 zinc finger protein 426-like NW_004955495 1108859 1135681 - 102022508 AGCD01061673;GBDK01293405;XM_013505074;XM_013505075;XM_013505076 XP_013360528;XP_013360529;XP_013360530 MODEL 8921295 ncrna LOC102007202 uncharacterized LOC102007202 NW_004955410 35720695 35722354 + 102007202 AGCD01011413;GBDF01055303;XR_259904 MODEL 8857209 protein-coding LOC102024937 olfactory receptor 4C16-like NW_004955511 329666 330598 + 102024937 AGCD01066327;XM_005407941 XP_005407998 MODEL 8855033 protein-coding Hyal2 hyaluronidase 2 ENCODES a protein that exhibits enzyme binding (ortholog); hyaluronic acid binding (ortholog); hyaluronoglucuronidase activity (ortholog); INVOLVED IN cartilage development (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); cellular response to interleukin-1 (ortholog); ASSOCIATED WITH CLEFT LIP AND PALATE-CRANIOFACIAL DYSMORPHISM-CONGENITAL HEART DEFECT-HEARING LOSS SYNDROME (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955532 2120781 2125083 - 102029997 AGCD01070218;AGCD01070219;GBCE01137215;GBDF01080402;XM_013507587 XP_013363041 MODEL 8783033 pseudo LOC102019402 kinesin-associated protein 3 pseudogene NW_004955492 2924415 2926457 + 102019402 AGCD01060683 MODEL 8745735 pseudo LOC102021184 UMP-CMP kinase-like NW_004955445 7315816 7316614 - 102021184 AGCD01039538 MODEL 8753410 pseudo LOC102009099 UDP-glucuronosyltransferase 1-1 pseudogene NW_004955433 9487229 9488826 + 102009099 AGCD01031613 MODEL 8727115 protein-coding LOC102026962 DNA dC->dU-editing enzyme APOBEC-3H NW_004955413 25056223 25059761 + 102026962 AGCD01014392;GBBH01087809;XM_013511480 XP_013366934 MODEL 8727901 protein-coding LOC102023926 zinc finger protein 426-like NW_004955495 1172958 1195064 + 102023926 AGCD01061675;GBDF01047470;XM_013505073 XP_013360527 MODEL 10355884 pseudo LOC106146865 small nuclear ribonucleoprotein E-like NW_004955500 5337107 5338387 - 106146865 AGCD01063832 MODEL 8783574 protein-coding Derl2 derlin 2 ENCODES a protein that exhibits protein-containing complex binding (ortholog); signal recognition particle binding (ortholog); INVOLVED IN endoplasmic reticulum unfolded protein response (ortholog); ERAD pathway (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 25 (ortholog); FOUND IN early endosome (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955467 10824922 10837408 - 102012520 AGCD01051585;AGCD01051586;GBCC01027755;GBDI01134494;XM_013522214 XP_013377668 MODEL 8841178 protein-coding Spata32 spermatogenesis associated 32 ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN spermatogenesis (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog) NW_004955451 17896753 17907700 - 102026385 AGCD01043781;AGCD01043782;GBDF01008108;XM_005394574 XP_005394631 MODEL 8996389 ncrna LOC102009100 uncharacterized LOC102009100 NW_004955523 130276 134656 - 102009100 AGCD01068435;XR_001231912 MODEL 8723956 pseudo LOC102007523 NEDD8-conjugating enzyme Ubc12 pseudogene NW_004955409 21637990 21714722 + 102007523 AGCD01009975;AGCD01009976;AGCD01009977;AGCD01009978;XM_005377162 MODEL 8751739 protein-coding Best4 bestrophin 4 ENCODES a protein that exhibits bicarbonate channel activity (ortholog); chloride channel activity (ortholog); intracellularly calcium-gated chloride channel activity (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955464 13434429 13439108 + 102011635 AGCD01050277;AGCD01050278;GBDI01362790;XM_005398742 XP_005398799 MODEL 8810062 ncrna LOC102018169 uncharacterized LOC102018169 NW_004955411 3795767 3797434 - 102018169 AGCD01011556;XR_259914 MODEL 8980260 protein-coding Vcf2 VCP nuclear cofactor family member 2 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955475 2569791 2570081 - 102021876 AGCD01054812;GBDF01052301;GBDJ01124841;XM_013502811 XP_013358265 MODEL 8856599 pseudo LOC102028641 cell division control protein 42 homolog NW_004955488 5783989 5785031 - 102028641 AGCD01059635 MODEL 8745048 ncrna LOC102017810 uncharacterized LOC102017810 NW_004955436 21304021 21311466 + 102017810 AGCD01034051;GBBH01051674;XR_261805 MODEL 8797788 protein-coding Wtap WT1 associated protein ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mRNA processing (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); FOUND IN cytoplasm (ortholog); nuclear membrane (ortholog); nuclear speck (ortholog) NW_004955439 21149970 21174479 - 102017706 AGCD01036142;AGCD01036143;GBCE01054140;GBDJ01127571;XM_013517328 XP_013372782 MODEL 8805749 protein-coding Bet1 Bet1 golgi vesicular membrane trafficking protein ENCODES a protein that exhibits syntaxin binding (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); vesicle fusion with Golgi apparatus (ortholog); ASSOCIATED WITH Congenital Muscular Dystrophy with Rapid Progression (ortholog); COVID-19 (ortholog); epilepsy (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum (ortholog); Golgi cis cisterna (ortholog) NW_004955432 10762973 10774744 - 102011573 AGCD01030936;GBDF01048008;XM_005388040 XP_005388097 MODEL 8868470 protein-coding LOC102028642 melanoma-associated antigen 10-like NW_004955489 4422091 4531174 - 102028642 AGCD01059902;AGCD01059903;AGCD01059904;AGCD01059905;AGCD01059906;GBBH01050182;XM_013504453;XM_013504454 XP_013359907;XP_013359908 MODEL 8803699 pseudo LOC102017817 ubiquitin-like protein 7 pseudogene NW_004955442 13459192 13461151 + 102017817 AGCD01037774 MODEL 9057720 protein-coding LOC102005760 phosphatidylinositol-binding clathrin assembly protein-like NW_004955594 504817 535099 - 102005760 AGCD01076429;AGCD01076430;AGCD01076431;AGCD01076432;AGCD01076433;AGCD01076434;GBBH01019273;GBCB01101047;XM_005414676;XM_013510002;XM_013510003 XP_005414733;XP_013365456;XP_013365457 MODEL 39132344 snrna U6 U6 spliceosomal RNA 8995178 pseudo LOC102023927 nuclear pore complex protein Nup153 pseudogene NW_004955422 23256961 23260039 - 102023927 AGCD01023186 MODEL 8914517 protein-coding LOC102028649 olfactory receptor 4A47-like NW_004955422 92460 93377 + 102028649 AGCD01022393;XM_005384927 XP_005384984 MODEL 9047086 protein-coding Gpr153 G protein-coupled receptor 153 ASSOCIATED WITH Childhood Schizophrenia (ortholog); chromosome 1p36 deletion syndrome (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955486 6264321 6270979 + 102025913 AGCD01059116;AGCD01059117;GBBH01225078;GBCE01002905;XM_013504323 XP_013359777 MODEL 39132968 snrna U6 U6 spliceosomal RNA 39133551 mirna MIR302A microRNA 302a 8964898 protein-coding Derl3 derlin 3 ENCODES a protein that exhibits protein-containing complex binding (ortholog); signal recognition particle binding (ortholog); INVOLVED IN endoplasmic reticulum unfolded protein response (ortholog); ERAD pathway (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); ASSOCIATED WITH agammaglobulinemia 2 (ortholog); Coffin-Siris syndrome 3 (ortholog); epilepsy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955455 8415868 8418753 + 102010869 AGCD01045891;GBDI01131857;XM_005396416;XM_005396417 XP_005396473;XP_005396474 MODEL 39132345 snrna U6 U6 spliceosomal RNA 8708810 protein-coding LOC102024553 olfactory receptor 52E1-like NW_004955414 20797441 20798379 + 102024553 AGCD01015389;XM_005380068 XP_005380125 MODEL 9052787 protein-coding Nedd1 NEDD1 gamma-tubulin ring complex targeting factor FOUND IN apical part of cell (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955405 33066734 33109750 + 102012153 AGCD01005352;AGCD01005353;GBDF01005946;XM_005374503 XP_005374560 MODEL 8998886 protein-coding Saal1 serum amyloid A like 1 INVOLVED IN positive regulation of synoviocyte proliferation (ortholog); ASSOCIATED WITH intellectual disability (ortholog); progressive myoclonus epilepsy 7 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955414 32853291 32868061 - 102015191 AGCD01015784;GBDJ01386150;XM_005380399 XP_005380456 MODEL 8878986 pseudo LOC102022509 guanylate-binding protein 4-like NW_004955423 4993794 5018433 - 102022509 AGCD01023551 MODEL 8888937 ncrna LOC102013393 uncharacterized LOC102013393 NW_004955410 13697777 13709802 - 102013393 AGCD01010893;GBDF01251247;XR_259838 MODEL 39134230 mirna MIR302B microRNA 302b 8710451 protein-coding Skic2 SKI2 subunit of superkiller complex ENCODES a protein that exhibits 3'-5' RNA helicase activity (ortholog); INVOLVED IN nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay (ortholog); rescue of stalled ribosome (ortholog); ASSOCIATED WITH genetic disease (ortholog); immunodeficiency 57 (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN Ski complex (ortholog) NW_004955437 473192 482811 + 102005746 AGCD01034137;GBDF01120948;XM_005389400 XP_005389457 MODEL 8840562 protein-coding Gpr155 G protein-coupled receptor 155 ENCODES a protein that exhibits cholesterol binding (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to cholesterol (ortholog); cognition (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Hepatomegaly (ortholog); split hand-foot malformation 5 (ortholog); FOUND IN lysosomal membrane (ortholog) NW_004955449 889657 930146 + 102005862 AGCD01041775;AGCD01041776;GBDI01125208;XM_005393184;XM_005393185;XM_005393186;XM_005393188 XP_005393241;XP_005393242;XP_005393243;XP_005393245 MODEL 8721309 ncrna LOC102019406 uncharacterized LOC102019406 NW_004955422 17689447 17710741 - 102019406 AGCD01022932;GBDF01207243;XR_001233931;XR_001233932 MODEL 8911906 protein-coding Unc93b1 unc-93 homolog B1, TLR signaling regulator ENCODES a protein that exhibits Toll-like receptor binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); cell morphogenesis (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN early phagosome (ortholog); endoplasmic reticulum (ortholog); endosome (ortholog) NW_004955422 17814174 17823945 + 102008634 AGCD01022932;GBCQ01151892;XM_005384293;XM_005384294;XM_013514243 XP_005384350;XP_005384351;XP_013369697 MODEL 9008028 ncrna LOC102020328 uncharacterized LOC102020328 NW_004955414 33108363 33109387 - 102020328 AGCD01015798;GBDF01127948;XR_260225 MODEL 8733570 pseudo LOC102009854 cytochrome c oxidase assembly factor 5 pseudogene NW_004955424 27866525 27870117 - 102009854 AGCD01025137 MODEL 8990732 protein-coding Nedd4 NEDD4 E3 ubiquitin protein ligase ENCODES a protein that exhibits beta-2 adrenergic receptor binding (ortholog); channel inhibitor activity (ortholog); enzyme binding (ortholog); INVOLVED IN adaptive immune response (ortholog); blood vessel morphogenesis (ortholog); cellular response to UV (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cell cortex (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955409 183645 281252 + 102008191 AGCD01009139;AGCD01009140;AGCD01009141;GBDI01291128;XM_005376602;XM_005376604;XM_005376605;XM_005376606;XM_013510263 XP_005376659;XP_005376661;XP_005376662;XP_005376663;XP_013365717 MODEL 8753630 protein-coding Taf11 TATA-box binding protein associated factor 11 ENCODES a protein that exhibits DNA binding (ortholog); nuclear thyroid hormone receptor binding (ortholog); nuclear vitamin D receptor binding (ortholog); INVOLVED IN mRNA transcription by RNA polymerase II (ortholog); positive regulation by host of viral transcription (ortholog); positive regulation of transcription initiation by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN Golgi apparatus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955437 2908939 2916154 - 102019843 AGCD01034292;GBCB01073288;XM_005389535 XP_005389592 MODEL 9002713 protein-coding LOC102026963 olfactory receptor 6P1 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955468 10413443 10414396 - 102026963 AGCD01052084;XM_005400154 XP_005400211 MODEL 9034354 protein-coding Krt9 keratin 9 INVOLVED IN intermediate filament organization (ortholog); skin development (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Diffuse Palmoplantar Keratoderma (ortholog); epidermolytic palmoplantar keratoderma (ortholog); epidermolytic palmoplantar keratoderma 1 (ortholog); FOUND IN keratin filament (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955451 15890101 15896282 - 102004664 AGCD01043638;AGCD01043639;GBDJ01039244;XM_005394410 XP_005394467 MODEL 8935476 pseudo LOC102023592 zinc finger CCCH domain-containing protein 15 pseudogene NW_004955479 9466239 9467106 + 102023592 AGCD01056471 MODEL 9034611 protein-coding Epn3 epsin 3 ENCODES a protein that exhibits EH domain binding (ortholog); ASSOCIATED WITH diastolic heart failure (ortholog); hereditary breast ovarian cancer syndrome (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN clathrin-coated pit (ortholog); clathrin-coated vesicle (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955451 11209454 11218427 - 102011935 AGCD01043342;GBBH01089702;XM_013519085;XM_013519086;XM_013519088;XM_013519089;XM_013519090 XP_013374539;XP_013374540;XP_013374542;XP_013374543;XP_013374544 MODEL 8743062 pseudo LOC102017822 60S acidic ribosomal protein P0 pseudogene NW_004955563 1331294 1333153 - 102017822 AGCD01074141 MODEL 8928234 protein-coding Krtap29-1 keratin associated like protein 29-1 NW_004955451 15702932 15712934 - 102026706 AGCD01043634;GBDI01234356;XM_005394393;XM_013519184;XR_001235962 XP_005394450;XP_013374638 MODEL 8750528 protein-coding Phex phosphate regulating endopeptidase X-linked INVOLVED IN bone development (ortholog); bone mineralization (ortholog); cellular response to parathyroid hormone stimulus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal dominant hypophosphatemic rickets (ortholog); Craniofacial Abnormalities (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955509 2357263 2546802 + 102012111 AGCD01065997;AGCD01065998;AGCD01065999;AGCD01066000;AGCD01066001;AGCD01066002;AGCD01066003;AGCD01066004;GBCE01124064;XM_005407827 XP_005407884 MODEL 8977098 protein-coding Scnn1b sodium channel epithelial 1 subunit beta ENCODES a protein that exhibits ligand-gated sodium channel activity (ortholog); sodium channel activity (ortholog); sodium ion transmembrane transporter activity (ortholog); INVOLVED IN aldosterone metabolic process (ortholog); artery smooth muscle contraction (ortholog); cellular response to acidic pH (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH Adrenal Insufficiency (ortholog); autism spectrum disorder (ortholog); autosomal recessive pseudohypoaldosteronism type 1 (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); external side of plasma membrane (ortholog) NW_004955493 1937507 1956248 + 102020681 AGCD01060915;GBBH01001430;GBCE01031423;XM_013504885 XP_013360339 MODEL 8834217 pseudo LOC102028650 male-specific lethal 3 homolog pseudogene NW_004955495 5398779 5400822 - 102028650 AGCD01062002;XM_005405861 MODEL 8794231 protein-coding Tmprss12 transmembrane serine protease 12 INVOLVED IN acrosome assembly (ortholog); binding of sperm to zona pellucida (ortholog); positive regulation of sperm capacitation (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955547 1305697 1332131 + 102018227 AGCD01072208;AGCD01072209;AGCD01072210;AGCD01072211;AGCD01072212;AGCD01072213;GBDK01397321;XM_013508443 XP_013363897 MODEL 9054371 protein-coding Ppp1r13b protein phosphatase 1 regulatory subunit 13B INVOLVED IN intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); positive regulation of cellular process (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); Childhood Schizophrenia (ortholog); immunodeficiency 132A (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955538 2519765 2594769 - 102017603 AGCD01071128;AGCD01071129;GBDI01140082;XM_005410809;XM_005410811;XM_013507841;XM_013507842 XP_005410866;XP_005410868;XP_013363295;XP_013363296 MODEL 8791456 pseudo LOC102024554 integrator complex subunit 10 pseudogene NW_004955470 2171427 2172046 - 102024554 AGCD01052673 MODEL 10261119 ncrna LOC106149134 uncharacterized LOC106149134 NW_004955437 7806980 7811420 + 106149134 AGCD01034469;XR_001235096 MODEL 8770323 protein-coding LOC102012181 G2/mitotic-specific cyclin-B1-like NW_004955413 26407831 26409562 - 102012181 AGCD01014441;XM_013511379 XP_013366833 MODEL 40834595 protein-coding KRTAP4-3 keratin associated protein 4-3 8890880 protein-coding LOC102021185 zinc finger protein 444-like NW_004955567 487229 494912 - 102021185 AGCD01074406;GBBH01167164;GBDI01263884;XM_013509302 XP_013364756 MODEL 8786835 pseudo LOC102028652 60S ribosomal protein L39 pseudogene NW_004955495 6379385 6379877 - 102028652 AGCD01062076 MODEL 39133589 mirna MIR302C microRNA 302c 8935401 protein-coding LOC102019408 olfactory receptor 7G2-like NW_004955495 141820 142770 - 102019408 AGCD01061603;XM_005406113 XP_005406170 MODEL 9017322 protein-coding LOC102024556 uncharacterized LOC102024556 NW_004955414 29948314 29960179 + 102024556 AGCD01015720;AGCD01015721;GBDF01111853;XM_013511743 XP_013367197 MODEL 8878597 pseudo LOC102009101 DNA-directed RNA polymerases I, II, and III subunit RPABC1 pseudogene NW_004955434 8689984 8692539 - 102009101 AGCD01032262 MODEL 8903112 pseudo LOC102020329 proteasome subunit alpha type-6 pseudogene NW_004955472 12332579 12333266 - 102020329 AGCD01053795 MODEL 8822550 ncrna LOC102009857 uncharacterized LOC102009857 NW_004955425 20777011 20788476 - 102009857 AGCD01025762;AGCD01025763;GBDJ01354331;XR_261165;XR_261166 MODEL 8817562 protein-coding Terb2 telomere repeat binding bouquet formation protein 2 INVOLVED IN double-strand break repair involved in meiotic recombination (ortholog); homologous chromosome pairing at meiosis (ortholog); meiotic attachment of telomere to nuclear envelope (ortholog); ASSOCIATED WITH AGAT deficiency (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear envelope (ortholog); nuclear inner membrane (ortholog) NW_004955409 8352685 8371576 - 102025550 AGCD01009399;AGCD01009400;AGCD01009401;AGCD01009402;GBDF01156864;XM_005376747;XM_013510475 XP_005376804;XP_013365929 MODEL 8971486 protein-coding Vcl vinculin ENCODES a protein that exhibits actin binding (ortholog); alpha-catenin binding (ortholog); dystroglycan binding (ortholog); INVOLVED IN adherens junction assembly (ortholog); apical junction assembly (ortholog); axon extension (ortholog); PARTICIPATES IN E-cadherin signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); autism spectrum disorder (ortholog); cardiomyopathy (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog); adherens junction (ortholog) NW_004955437 17812998 17920253 - 102005178 AGCD01034761;AGCD01034762;AGCD01034763;GBDK01075024;XM_005389933;XM_005389934;XM_005389935 XP_005389990;XP_005389991;XP_005389992 MODEL 8838885 pseudo LOC102007204 IST1 homolog pseudogene NW_004955463 5955659 5975823 - 102007204 AGCD01049650;AGCD01049651;AGCD01049652 MODEL 8721043 ncrna LOC102009858 uncharacterized LOC102009858 NW_004955426 4649998 4654801 + 102009858 AGCD01026105;GBDF01248724;XR_261189 MODEL 8867656 protein-coding LOC102024557 olfactory receptor 1019-like NW_004955473 3548903 3549826 + 102024557 AGCD01053935;XM_005401294 XP_005401351 MODEL 9031964 protein-coding Sac3d1 SAC3 domain containing 1 INVOLVED IN centrosome duplication (ortholog); negative regulation of receptor signaling pathway via JAK-STAT (ortholog); regulation of immune response (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog); intellectual disability (ortholog); FOUND IN centrosome (ortholog); microtubule cytoskeleton (ortholog); nucleus (ortholog) NW_004955422 20146359 20149152 - 102021361 AGCD01023067;AGCD01023068;GBBH01082267;GBCE01123690;XM_013514235 XP_013369689 MODEL 9048285 protein-coding Scnn1d sodium channel epithelial 1 subunit delta ENCODES a protein that exhibits sodium channel activity (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); intracellular sodium ion homeostasis (ortholog); sodium ion import across plasma membrane (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN actin cytoskeleton (ortholog); apical plasma membrane (ortholog); membrane (ortholog) NW_004955486 9508435 9514107 - 102028865 AGCD01059188;GBDI01243410;XM_005404326 XP_005404383 MODEL 9020772 pseudo LOC102013402 DNA-directed RNA polymerase III subunit RPC7 pseudogene NW_004955413 383694 386168 - 102013402 AGCD01013462 MODEL 8871078 protein-coding Bet1l Bet1 golgi vesicular membrane trafficking protein like ENCODES a protein that exhibits SNAP receptor activity (ortholog); INVOLVED IN regulation of retrograde vesicle-mediated transport, Golgi to ER (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH endometrial adenocarcinoma (ortholog); uterine fibroid (ortholog); FOUND IN endosome (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955476 11833595 11836411 + 102003233 AGCD01055475;GBDK01142903;XM_005401891;XM_013502918 XP_005401948;XP_013358372 MODEL 9028095 ncrna LOC102003258 uncharacterized LOC102003258 NW_004955424 19212442 19216315 - 102003258 AGCD01024810;GBDF01079876;XR_261081 MODEL 8742272 protein-coding Vcp valosin containing protein ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN aggresome assembly (ortholog); ATP metabolic process (ortholog); autophagosome maturation (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN ATPase complex (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955472 1111649 1124076 + 102016151 AGCD01053375;AGCD01053376;GBCC01050569;GBDF01008145;XM_005401031 XP_005401088 MODEL 9001706 protein-coding Skic3 SKI3 subunit of superkiller complex INVOLVED IN nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay (ortholog); rescue of stalled ribosome (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); euchromatin (ortholog) NW_004955418 16989400 17068479 + 102016809 AGCD01019140;AGCD01019141;AGCD01019142;AGCD01019143;GBDF01158587;XM_005382246;XM_005382248 XP_005382303;XP_005382305 MODEL 9041652 pseudo LOC102008680 wiskott-Aldrich syndrome protein family member 1 pseudogene NW_004955403 9508735 9510324 + 102008680 AGCD01001908 MODEL 8787014 ncrna LOC102007524 uncharacterized LOC102007524 NW_004955462 7283476 7285145 - 102007524 AGCD01049299;GBDF01181580;XR_263102 MODEL 8707995 protein-coding LOC102018173 protein SPT2 homolog NW_004955412 18553976 18555107 + 102018173 AGCD01012944;AGCD01012945;GBDF01021744;XM_013510975 XP_013366429 MODEL 8813366 protein-coding Nedd4l NEDD4 like E3 ubiquitin protein ligase ENCODES a protein that exhibits potassium channel inhibitor activity (ortholog); sodium channel inhibitor activity (ortholog); sodium channel regulator activity (ortholog); INVOLVED IN establishment of localization in cell (ortholog); negative regulation of potassium ion export across plasma membrane (ortholog); negative regulation of potassium ion transmembrane transport (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); cleft palate (ortholog); Developmental Disease (ortholog); FOUND IN apical plasma membrane (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955402 42339380 42688661 + 102007718 AGCD01001040;AGCD01001041;AGCD01001042;AGCD01001043;AGCD01001044;GBDF01258194;XM_005372981;XM_005372983;XM_005372986;XM_005372988;XM_013510994;XM_013510999;XM_013511005;XM_013511013 XP_005373038;XP_005373040;XP_005373043;XP_005373045;XP_013366448;XP_013366453;XP_013366459;XP_013366467 MODEL 8719554 protein-coding LOC102024938 olfactory receptor 6Q1 ASSOCIATED WITH intellectual disability (ortholog) NW_004955511 2822493 2823456 + 102024938 AGCD01066428;XM_005408020 XP_005408077 MODEL 8995791 protein-coding LOC102013405 cytochrome P450 2D17-like NW_004955413 27621018 27639195 - 102013405 AGCD01014521;AGCD01014522;AGCD01014523;AGCD01014524;AGCD01014525;AGCD01014526;GBBH01145942;XM_013511462 XP_013366916 MODEL 39132347 snrna U6 U6 spliceosomal RNA 8887928 pseudo LOC102007526 actin-related protein 10 pseudogene NW_004955463 6222350 6224556 + 102007526 AGCD01049659 MODEL 8717189 protein-coding LOC102008682 plakophilin-2-like NW_004956130 12 5617 + 102008682 AGCD01079104;GBDK01128349;GBDK01128352;XM_005415169 XP_005415226 MODEL 8733773 protein-coding LOC102015192 methyl-CpG-binding domain protein 3 NW_004955472 2101649 2105184 - 102015192 AGCD01053435;GBCB01002272;GBCE01056293;XM_013522947 XP_013378401 MODEL 10240824 protein-coding LOC106146866 basic salivary proline-rich protein 3-like NW_004955500 6674976 6675854 - 106146866 AGCD01063890;GBDF01146257;GBDF01146262;XM_013505633 XP_013361087 MODEL 9020574 protein-coding Nedd8 NEDD8 ubiquitin like modifier ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN cellular response to camptothecin (ortholog); protein localization (ortholog); protein neddylation (ortholog); PARTICIPATES IN neddylation pathway; p53 signaling pathway; proteasome degradation pathway involving cullin-dependent ubiquitin ligases; ASSOCIATED WITH Alcoholic Liver Diseases (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); nucleoplasm (ortholog) NW_004955409 36173533 36182444 + 102005448 AGCD01010450;GBDF01043770;XM_005377023 XP_005377080 MODEL 39132348 snrna U6 U6 spliceosomal RNA 39133461 snrna U4 U4 spliceosomal RNA 9053446 protein-coding Znf330 zinc finger protein 330 FOUND IN chromosome, centromeric region (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955471 1933675 1946572 - 102012086 AGCD01052994;GBDK01322836;XM_005400862;XM_005400864;XM_013522921 XP_005400919;XP_005400921;XP_013378375 MODEL 8711635 pseudo LOC102021193 C-terminal-binding protein 2 pseudogene NW_004955450 17232209 17233685 + 102021193 AGCD01042865 MODEL 8802575 protein-coding LOC102028653 olfactory receptor 10H1-like NW_004955495 7391238 7392188 - 102028653 AGCD01062132;XM_013505183 XP_013360637 MODEL 8770945 pseudo LOC102003261 40S ribosomal protein S20 pseudogene NW_004955501 30940 31292 + 102003261 AGCD01063987 MODEL 39133559 mirna MIR302D microRNA 302d 8872531 protein-coding LOC102026964 chromosome unknown open reading frame, human C2orf49 ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); cardiomyopathy (ortholog); dilated cardiomyopathy (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); tRNA-splicing ligase complex (ortholog) NW_004955470 10223467 10234309 + 102026964 AGCD01052859;GBDF01118856;XM_005400782 XP_005400839 MODEL 8715714 pseudo LOC102019411 probable global transcription activator SNF2L2 NW_004955500 1745320 1748206 + 102019411 AGCD01063681 MODEL 8960938 protein-coding Bex2 brain expressed X-linked 2 ENCODES a protein that exhibits molecular function inhibitor activity (ortholog); INVOLVED IN axon development (ortholog); axon regeneration (ortholog); negative regulation of protein ubiquitination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955548 439061 505418 - 102023748 AGCD01072332;AGCD01072333;GBCE01172021;XM_005411981;XM_005411982;XM_005411984;XM_005411985;XM_013508531 XP_005412038;XP_005412039;XP_005412041;XP_005412042;XP_013363985 MODEL 10341850 ncrna LOC106149982 uncharacterized LOC106149982 NW_004955459 581712 585247 + 106149982 AGCD01047940;GBCB01122068;XR_001236486 MODEL 39132349 snrna U6 U6 spliceosomal RNA 9024305 ncrna LOC102020333 uncharacterized LOC102020333 NW_004955476 9010691 9023839 + 102020333 AGCD01055377;GBDF01053841;XR_001230806 MODEL 9006919 protein-coding Klf3 KLF transcription factor 3 ENCODES a protein that exhibits RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cellular response to endothelin (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955443 8526371 8549510 - 102004983 AGCD01038328;GBCE01097434;XM_005391998;XM_005391999;XM_005392000;XM_005392001;XM_005392002 XP_005392055;XP_005392056;XP_005392057;XP_005392058;XP_005392059 MODEL 8985996 pseudo LOC102003264 PHD finger protein 7-like NW_004955429 11735749 11737540 - 102003264 AGCD01028693 MODEL 8771616 pseudo LOC102024940 olfactory receptor 4C13-like NW_004955511 235270 236028 + 102024940 AGCD01066325 MODEL 10346798 ncrna LOC106149983 uncharacterized LOC106149983 NW_004955459 3077389 3092788 + 106149983 AGCD01048007;XR_001236487 MODEL 8874101 protein-coding Lmtk2 lemur tyrosine kinase 2 ENCODES a protein that exhibits myosin VI binding (ortholog); protein phosphatase inhibitor activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN early endosome to late endosome transport (ortholog); endocytic recycling (ortholog); peptidyl-serine phosphorylation (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); Prostatic Neoplasms (ortholog); FOUND IN early endosome (ortholog); Golgi apparatus (ortholog); growth cone (ortholog) NW_004955460 14012047 14101969 + 102026951 AGCD01048736;AGCD01048737;AGCD01048738;GBDF01089102;XM_005397908;XM_005397909 XP_005397965;XP_005397966 MODEL 8931418 protein-coding Tmprss13 transmembrane serine protease 13 INVOLVED IN establishment of skin barrier (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog) NW_004955412 19111391 19139391 - 102003637 AGCD01012946;AGCD01012947;AGCD01012948;GBCE01059201;XM_005378223;XM_005378224;XM_005378225;XM_013511252 XP_005378280;XP_005378281;XP_005378282;XP_013366706 MODEL 8726496 protein-coding Krtcap2 keratinocyte associated protein 2 ENCODES a protein that exhibits enzyme activator activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN protein N-linked glycosylation (ortholog); protein N-linked glycosylation via asparagine (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN oligosaccharyltransferase complex (ortholog) NW_004955545 1642578 1645699 - 102027681 AGCD01071864;GBDF01000034;XM_005411578;XM_013508306 XP_005411635;XP_013363760 MODEL 10290342 protein-coding LOC106146867 desert hedgehog protein-like NW_004955500 7915242 7915937 - 106146867 AGCD01063958;GBCQ01139694;XM_013505640 XP_013361094 MODEL 8906058 pseudo LOC102024942 40S ribosomal protein SA-like NW_004955432 8864369 8865430 + 102024942 AGCD01030888 MODEL 39133462 snrna U4 U4 spliceosomal RNA 39131402 protein-coding TAF12 TATA-box binding protein associated factor 12 8829052 protein-coding Lmtk3 lemur tyrosine kinase 3 ASSOCIATED WITH epilepsy (ortholog) NW_004955559 1994851 2011578 + 102021716 AGCD01073685;AGCD01073686;GBBH01192666;XM_013508949 XP_013364403 MODEL 8835166 protein-coding Krtcap3 keratinocyte associated protein 3 ASSOCIATED WITH Bardet-Biedl syndrome 20 (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog) NW_004955469 9416732 9418523 + 102005460 AGCD01052503;GBDF01041820;XM_005400504 XP_005400561 MODEL 8896389 protein-coding Skic8 SKI8 subunit of superkiller complex INVOLVED IN negative regulation of myeloid cell differentiation (ortholog); nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay (ortholog); rescue of stalled ribosome (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN Cdc73/Paf1 complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955450 771646 788895 - 102008797 AGCD01042344;GBCE01077094;XM_005393443;XM_005393444 XP_005393500;XP_005393501 MODEL 9042418 protein-coding LOC102009114 olfactory receptor 1F1-like NW_004955442 14172448 14196764 - 102009114 AGCD01037803;AGCD01037804;AGCD01037805;AGCD01037806;GBDF01061825;XM_005391855 XP_005391912 MODEL 8892708 pseudo LOC102028656 fatty acid-binding protein, heart pseudogene NW_004955425 25863616 25864035 - 102028656 AGCD01025939 MODEL 39133463 snrna U4 U4 spliceosomal RNA 8860297 ncrna LOC102020334 uncharacterized LOC102020334 NW_004955478 1118663 1128148 + 102020334 AGCD01055756;GBCE01092361;XR_263684 MODEL 8838226 pseudo LOC102012184 U1 small nuclear ribonucleoprotein A pseudogene NW_004955413 587042 587756 + 102012184 AGCD01013481 MODEL 8918878 ncrna LOC102008684 uncharacterized LOC102008684 NW_004955403 54070872 54077075 - 102008684 AGCD01003087;GBDJ01213136;XR_001234164;XR_001234165;XR_001234166;XR_001234167;XR_001234168;XR_001234169;XR_001234171;XR_001234172;XR_001234173 MODEL 9005094 protein-coding Sgpp2 sphingosine-1-phosphate phosphatase 2 ENCODES a protein that exhibits sphingosine-1-phosphate phosphatase activity (ortholog); INVOLVED IN regulation of type B pancreatic cell proliferation (ortholog); sphingosine metabolic process (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955453 11244077 11361990 - 102024083 AGCD01044806;AGCD01044807;GBDJ01238332;XM_005395495;XM_005395497 XP_005395552;XP_005395554 MODEL 8919434 protein-coding LOC102028657 glutathione peroxidase 3-like NW_004955425 25483084 25483659 - 102028657 AGCD01025921;GBDF01023870;XM_013514780 XP_013370234 MODEL 9034946 protein-coding Klf4 KLF transcription factor 4 ENCODES a protein that exhibits beta-catenin binding (ortholog); chromatin DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); cellular response to endothelin (ortholog); cellular response to growth factor stimulus (ortholog); ASSOCIATED WITH Carotid Artery Injuries (ortholog); Congenital Abnormalities (ortholog); congenital heart disease (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955419 19280311 19284097 + 102023154 AGCD01020198;GBBH01064662;GBDI01182816;XM_005382762 XP_005382819 MODEL 8748736 protein-coding Lmx1a LIM homeobox transcription factor 1 alpha ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN axon guidance (ortholog); central nervous system development (ortholog); central nervous system neuron differentiation (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 7 (ortholog); gastrointestinal stromal tumor (ortholog); Hearing Loss (ortholog) NW_004955462 11328583 11484438 + 102006223 AGCD01049389;AGCD01049390;AGCD01049391;GBCE01146328;XM_005398249;XM_013521354;XM_013521355 XP_005398306;XP_013376808;XP_013376809 MODEL 39133464 snrna U4 U4 spliceosomal RNA 8753411 ncrna LOC102009116 uncharacterized LOC102009116 NW_004955561 1295394 1311775 + 102009116 AGCD01073847;AGCD01073848;GBDF01260254;XR_001232356 MODEL 8818814 protein-coding Scnn1g sodium channel epithelial 1 subunit gamma ENCODES a protein that exhibits ligand-gated sodium channel activity (ortholog); monoatomic ion channel activity (ortholog); sodium channel activity (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); cellular response to aldosterone (ortholog); intracellular sodium ion homeostasis (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive pseudohypoaldosteronism type 1 (ortholog); bronchiectasis 3 (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); external side of plasma membrane (ortholog) NW_004955493 1787693 1813085 + 102019924 AGCD01060908;AGCD01060909;GBDF01224981;GBDJ01136157;XM_013504874 XP_013360328 MODEL 8777252 ncrna LOC102022884 uncharacterized LOC102022884 NW_004955456 16036632 16057110 - 102022884 AGCD01046684;AGCD01046685;AGCD01046686;GBCB01078517;XR_001236358 MODEL 8974001 protein-coding LOC102012188 vomeronasal type-1 receptor 90-like NW_004955414 14997711 14998679 - 102012188 AGCD01015167;XM_005380441 XP_005380498 MODEL 8731632 protein-coding LOC102018178 olfactory receptor 10T2-like NW_004955414 23717094 23718032 + 102018178 AGCD01015518;XM_005380522 XP_005380579 MODEL 8726536 pseudo LOC102028658 growth factor receptor-bound protein 2 pseudogene NW_004955504 385030 385794 - 102028658 AGCD01064819 MODEL 8987722 protein-coding LOC102016949 uncharacterized LOC102016949 NW_004955524 4407855 4477018 - 102016949 AGCD01068971;AGCD01068972;AGCD01068973;AGCD01068974;AGCD01068975;AGCD01068976;AGCD01068977;AGCD01068978;AGCD01068979;AGCD01068980;AGCD01068981;XM_013507207 XP_013362661 MODEL 8714102 protein-coding Spata33 spermatogenesis associated 33 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN fertilization (ortholog); flagellated sperm motility (ortholog); mitophagy (ortholog); ASSOCIATED WITH autosomal recessive chronic granulomatous disease 4 (ortholog); Fanconi anemia (ortholog); Fanconi anemia complementation group A (ortholog); FOUND IN cytoplasm (ortholog); male germ cell nucleus (ortholog); mitochondrion (ortholog) NW_004955541 3223552 3232837 + 102012026 AGCD01071440;GBDI01027080;XM_005411046;XM_005411047;XM_013507946 XP_005411103;XP_005411104;XP_013363400 MODEL 9032646 ncrna LOC102022510 uncharacterized LOC102022510 NW_004955424 1640539 1648980 + 102022510 AGCD01024243;XR_261026 MODEL 8751436 protein-coding LOC102024947 nucleosome assembly protein 1-like 3 NW_004955525 4198876 4200683 - 102024947 AGCD01069180;GBCB01076055;XM_005415348 XP_005415405 MODEL 8812593 protein-coding Wtip WT1 interacting protein ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN cytoskeleton organization (ortholog); miRNA-mediated gene silencing by inhibition of translation (ortholog); miRNA-mediated post-transcriptional gene silencing (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 75 (ortholog); FOUND IN P-body (ortholog) NW_004955468 4082681 4106265 + 102005130 AGCD01051886;AGCD01051887;AGCD01051888;AGCD01051889;AGCD01051890;GBCE01095541;GBDI01225629;XM_013522520 XP_013377974 MODEL 8739347 protein-coding LOC102007206 histone H2A type 1 NW_004955465 13392074 13392621 - 102007206 AGCD01050607;XM_005398951 XP_005399008 MODEL 8735224 ncrna LOC102019414 uncharacterized LOC102019414 NW_004955504 6797808 6800456 + 102019414 AGCD01064930;GBDJ01316295;XR_264297 MODEL 10288253 ncrna LOC106149135 uncharacterized LOC106149135 NW_004955404 15090086 15114602 - 106149135 AGCD01003532;AGCD01003533;GBDF01235516;XR_001235099;XR_001235100;XR_001235101 MODEL 8746306 protein-coding LOC102013406 olfactory receptor 6-like NW_004955414 22692862 22693770 - 102013406 AGCD01015471;GBBH01130436;XM_005380511 XP_005380568 MODEL 8862508 ncrna LOC102018180 uncharacterized LOC102018180 NW_004955416 11264103 11270327 - 102018180 AGCD01017181;GBDF01051838;XR_001233298 MODEL 8995103 protein-coding Uncx UNC homeobox ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cartilage condensation (ortholog); common myeloid progenitor cell proliferation (ortholog); dorsal spinal cord development (ortholog) NW_004955460 8941629 8945761 + 102018267 AGCD01048535;AGCD01048536;GBBH01205398;XM_013521112 XP_013376566 MODEL 8784960 protein-coding LOC102006094 intestinal-type alkaline phosphatase-like NW_004955453 3530091 3533832 + 102006094 AGCD01044662;AGCD01044663;XM_005395706 XP_005395763 MODEL 8780648 protein-coding LOC102005763 tetratricopeptide repeat protein 30B NW_004955403 19246934 19250365 + 102005763 AGCD01002121;GBDF01044632;XM_005373400 XP_005373457 MODEL 9019231 protein-coding LOC102003265 ankyrin repeat domain-containing protein 26-like NW_004955510 3513464 3597054 + 102003265 AGCD01066239;AGCD01066240;AGCD01066241;AGCD01066242;GBDF01123488;XM_005407878 XP_005407935 MODEL 9005807 pseudo LOC102023594 thioredoxin-interacting protein pseudogene NW_004955480 6224297 6225462 - 102023594 AGCD01056683;XR_263753 MODEL 8719444 protein-coding Skida1 SKI/DACH domain containing 1 NW_004955429 7181234 7187309 + 102018422 AGCD01028583;AGCD01028584;GBDJ01303835;XM_013515352 XP_013370806 MODEL 39132970 snrna U6 U6 spliceosomal RNA 8723280 protein-coding LOC102007210 NKG2-D type II integral membrane protein NW_004955413 7623358 7639703 - 102007210 AGCD01013827;GBDI01345487;XM_005378934 XP_005378991 MODEL 9040769 protein-coding Hyal3 hyaluronidase 3 ENCODES a protein that exhibits hyaluronoglucuronidase activity (ortholog); hyalurononglucosaminidase activity (ortholog); virus receptor activity (ortholog); INVOLVED IN cartilage development (ortholog); cellular response to interleukin-1 (ortholog); cellular response to tumor necrosis factor (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); AURONEURODENTAL SYNDROME (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN acrosomal membrane (ortholog); acrosomal vesicle (ortholog); cytoplasmic vesicle (ortholog) NW_004955532 2107019 2112356 - 102028465 AGCD01070217;GBBH01160662;GBDK01192130;XM_005410254 XP_005410311 MODEL 8788331 ncrna LOC102005769 uncharacterized LOC102005769 NW_004955405 37792705 37803781 - 102005769 AGCD01005459;AGCD01005460;GBBH01012524;XR_259443 MODEL 8977572 ncrna LOC102008691 uncharacterized LOC102008691 NW_004955406 921242 942095 - 102008691 AGCD01005623;GBDF01120365;XR_001236178 MODEL 8879662 protein-coding Nedd9 neural precursor cell expressed, developmentally down-regulated 9 ENCODES a protein that exhibits protein tyrosine kinase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); cilium disassembly (ortholog); learning or memory (ortholog); ASSOCIATED WITH multiple sclerosis (ortholog); FOUND IN basolateral plasma membrane (ortholog); ciliary basal body (ortholog); cytosol (ortholog) NW_004955465 3101409 3281481 + 102017964 AGCD01050367;AGCD01050368;AGCD01050369;AGCD01050370;GBDI01262004;XM_005398827;XM_013521849 XP_005398884;XP_013377303 MODEL 39133465 snrna U4 U4 spliceosomal RNA 39133696 mirna MIR30C1 microRNA 30c-1 8964348 pseudo LOC102022885 ubiquitin-like-conjugating enzyme ATG3 pseudogene NW_004955457 11528132 11540917 + 102022885 AGCD01046971;AGCD01046972;AGCD01046973 MODEL 8814980 ncrna LOC102007527 uncharacterized LOC102007527 NW_004955465 7812882 7828643 - 102007527 AGCD01050469;GBDF01276911;XR_263251 MODEL 39133729 mirna MIR32 microRNA 32 8889988 protein-coding Krtdap keratinocyte differentiation associated protein INVOLVED IN epidermis development (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN extracellular space (ortholog); lamellar body (ortholog) NW_004955468 4713332 4716212 - 102019049 AGCD01051919;GBDI01000520;XM_005400053 XP_005400110 MODEL 8817541 pseudo LOC102024952 zinc finger protein 655-like NW_004955439 11555154 11556025 + 102024952 AGCD01035913 MODEL 8974341 ncrna LOC102020335 uncharacterized LOC102020335 NW_004955416 21327879 21329980 + 102020335 AGCD01017503;GBDF01253604;XR_260408 MODEL 10252141 protein-coding LOC106149136 uncharacterized LOC106149136 NW_004955402 2951799 2963783 - 106149136 AGCD01000094;GBDF01194615;XM_013517227 XP_013372681 MODEL 8729879 ncrna LOC102022886 uncharacterized LOC102022886 NW_004955457 15851511 15856913 + 102022886 AGCD01047099;GBBH01168531;XR_262955 MODEL 9067501 protein-coding Epo erythropoietin ENCODES a protein that exhibits cytokine activity (ortholog); erythropoietin receptor binding (ortholog); hormone activity (ortholog); INVOLVED IN acute-phase response (ortholog); apoptotic process (ortholog); cell surface receptor signaling pathway via STAT (ortholog); PARTICIPATES IN erythropoietin signaling pathway; hypoxia inducible factor pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Subdural Hematoma (ortholog); Acute-Phase Reaction (ortholog); FOUND IN cell body (ortholog); cell surface (ortholog); extracellular space (ortholog) NW_004955573 203875 206078 - 102013562 AGCD01074966;GBDF01164330;XM_005413690 XP_005413747 MODEL 8743063 protein-coding LOC102017825 vomeronasal type-1 receptor 3-like NW_004955569 1124261 1125758 - 102017825 AGCD01074639;XM_005413519 XP_005413576 MODEL 405822137 mirna MIR323A microRNA 323a 8809979 protein-coding Vcpip1 valosin containing protein interacting protein 1 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN DNA damage response (ortholog); endoplasmic reticulum membrane fusion (ortholog); Golgi organization (ortholog); ASSOCIATED WITH progeria (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); synapse (ortholog) NW_004955444 12542479 12567971 + 102015671 AGCD01039076;GBDF01082900;XM_005392147 XP_005392204 MODEL 10068082 ncrna LOC106146868 uncharacterized LOC106146868 NW_004955407 42148395 42151965 + 106146868 AGCD01007885;GBBH01107271;XR_001231469 MODEL 8830319 ncrna LOC102026965 uncharacterized LOC102026965 NW_004955414 30725986 30734360 + 102026965 AGCD01015738;GBDF01065110;XR_260216 MODEL 8952419 protein-coding Skil SKI like proto-oncogene ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN blastocyst formation (ortholog); cell differentiation (ortholog); extrinsic apoptotic signaling pathway via death domain receptors (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); autosomal dominant dyskeratosis congenita 1 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955420 530531 554308 + 102020343 AGCD01020545;GBDI01355390;GBDJ01349393;XM_005382979 XP_005383036 MODEL 8925149 pseudo LOC102022894 nucleophosmin pseudogene NW_004955410 25134204 25135364 + 102022894 AGCD01011143;XM_005377573 MODEL 8710020 ncrna LOC102017826 uncharacterized LOC102017826 NW_004955447 224885 228738 - 102017826 AGCD01040449;GBDI01039983;XR_262402 MODEL 8985070 protein-coding Bex3 brain expressed X-linked 3 ENCODES a protein that exhibits death receptor binding (ortholog); identical protein binding (ortholog); molecular function inhibitor activity (ortholog); INVOLVED IN extrinsic apoptotic signaling pathway via death domain receptors (ortholog); negative regulation of protein ubiquitination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955548 526844 528406 + 102025517 AGCD01072333;GBCE01053102;XM_005411988;XM_005411989;XM_005411990;XM_005411991 XP_005412045;XP_005412046;XP_005412047;XP_005412048 MODEL 39132350 snrna U6 U6 spliceosomal RNA 8736953 protein-coding Hyal4 hyaluronidase 4 ENCODES a protein that exhibits hyalurononglucosaminidase activity (ortholog); INVOLVED IN chondroitin sulfate proteoglycan catabolic process (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cell surface (ortholog) NW_004955479 5355667 5364092 + 102021657 AGCD01056348;GBDK01199344;XM_005402453 XP_005402510 MODEL 9018296 protein-coding Ppp1r13l protein phosphatase 1 regulatory subunit 13 like ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cardiac muscle contraction (ortholog); cardiac right ventricle morphogenesis (ortholog); embryonic camera-type eye development (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH ARRHYTHMOGENIC CARDIOMYOPATHY WITH VARIABLE ECTODERMAL ABNORMALITIES (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); autosomal recessive disease (ortholog); FOUND IN cell junction (ortholog); cytosol (ortholog); intercellular bridge (ortholog) NW_004955555 2373088 2390973 - 102022549 AGCD01073148;AGCD01073149;GBCE01005109;GBCQ01038365;XM_013508705;XM_013508706;XM_013508707 XP_013364159;XP_013364160;XP_013364161 MODEL 10197959 ncrna LOC106150348 uncharacterized LOC106150348 NW_004955473 5124678 5163502 + 106150348 AGCD01053967;AGCD01053968;AGCD01053969;AGCD01053970;AGCD01053971;XR_001237115 MODEL 8990689 protein-coding Nefh neurofilament heavy chain ENCODES a protein that exhibits protein kinase binding (ortholog); protein-containing complex binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN axon development (ortholog); axon regeneration (ortholog); cellular response to estradiol stimulus (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); Anti-N-Methyl-D-Aspartate Receptor Encephalitis (ortholog); FOUND IN apical dendrite (ortholog); axon (ortholog); basal proximal dendrite (ortholog) NW_004955455 3735330 3744714 + 102007407 AGCD01045648;AGCD01045649;AGCD01045650;GBDK01418511;XM_013520291;XM_013520292;XM_013520293;XM_013520294;XM_013520295 XP_013375745;XP_013375746;XP_013375747;XP_013375748;XP_013375749 MODEL 8908472 protein-coding Spata4 spermatogenesis associated 4 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955403 31548696 31558177 + 102018550 AGCD01002421;GBDF01010895;XM_005373523;XM_013513215 XP_005373580;XP_013368669 MODEL 8838103 protein-coding Wwc1 WW and C2 domain containing 1 ENCODES a protein that exhibits kinase binding (ortholog); molecular adaptor activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN cell migration (ortholog); hippo signaling (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH immunodeficiency 40 (ortholog); malignant mesothelioma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955408 21362644 21529164 + 102010976 AGCD01008554;GBDJ01134962;GBDJ01134963;XM_005376298;XM_005376299 XP_005376355;XP_005376356 MODEL 8834839 protein-coding Ppp1r14a protein phosphatase 1 regulatory inhibitor subunit 14A INVOLVED IN cellular response to xenobiotic stimulus (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); Mesothelioma (ortholog); stomach cancer (ortholog) NW_004955468 1174946 1179289 + 102019585 AGCD01051760;GBCE01159119;XM_005399866 XP_005399923 MODEL 9011336 protein-coding LOC102019416 chromosome unknown open reading frame, human C3orf52 ASSOCIATED WITH hypotrichosis 15 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955427 12488729 12518512 + 102019416 AGCD01027216;AGCD01027217;AGCD01027218;GBCE01142565;GBDK01395430;XM_005386611 XP_005386668 MODEL 8707173 protein-coding LOC102007528 histone H2B type 1 NW_004955465 13392728 13393418 + 102007528 AGCD01050607;XM_005398952 XP_005399009 MODEL 8786619 protein-coding LOC102021195 zinc finger protein OZF-like NW_004955624 34649 73325 + 102021195 AGCD01077427;AGCD01077428;AGCD01077429;AGCD01077430;AGCD01077431;AGCD01077432;AGCD01077433;XM_005415021 XP_005415078 MODEL 8932125 protein-coding Ung uracil DNA glycosylase ENCODES a protein that exhibits damaged DNA binding (ortholog); ribosomal small subunit binding (ortholog); uracil DNA N-glycosylase activity (ortholog); INVOLVED IN base-excision repair (ortholog); base-excision repair, AP site formation via deaminated base removal (ortholog); isotype switching (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); Colorectal Neoplasms (ortholog); dysgammaglobulinemia (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955455 10266989 10282196 + 102030385 AGCD01045950;AGCD01045951;GBDF01162396;XM_005396483 XP_005396540 MODEL 8879317 pseudo LOC102020338 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform pseudogene NW_004955479 519760 520819 - 102020338 AGCD01056201;XR_263740 MODEL 8976934 protein-coding Ksr1 kinase suppressor of ras 1 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); ATP binding (ortholog); Hsp90 protein binding (ortholog); INVOLVED IN positive regulation of MAPK cascade (ortholog); Ras protein signal transduction (ortholog); regulation of cell population proliferation (ortholog); PARTICIPATES IN ceramide signaling pathway; platelet-derived growth factor signaling pathway; the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH breast adenocarcinoma (ortholog); breast cancer (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955481 5768166 5913557 - 102013414 AGCD01057003;AGCD01057004;AGCD01057005;GBCE01188097;XM_005402782;XM_005402783;XM_005402784;XM_005402785;XM_005402786;XM_005402787;XM_005402788;XM_005402789 XP_005402839;XP_005402840;XP_005402841;XP_005402842;XP_005402843;XP_005402844;XP_005402845;XP_005402846 MODEL 8766065 protein-coding Terf1 telomeric repeat binding factor 1 ENCODES a protein that exhibits ankyrin repeat binding (ortholog); DNA binding, bending (ortholog); double-stranded telomeric DNA binding (ortholog); INVOLVED IN meiotic telomere clustering (ortholog); negative regulation of DNA replication (ortholog); negative regulation of establishment of protein localization to telomere (ortholog); ASSOCIATED WITH breast cancer (ortholog); squamous cell carcinoma (ortholog); stomach cancer (ortholog); FOUND IN chromosome, telomeric region (ortholog); fibrillar center (ortholog); nuclear body (ortholog) NW_004955444 7103282 7149450 - 102026167 AGCD01038891;AGCD01038892;AGCD01038893;AGCD01038894;AGCD01038895;AGCD01038896;GBDJ01318609;XM_013518223 XP_013373677 MODEL 405822158 mirna MIR323B microRNA 323b 8781131 ncrna LOC102028667 uncharacterized LOC102028667 NW_004955430 738797 741890 - 102028667 AGCD01029103;GBDF01147893;XR_261400 MODEL 8970440 protein-coding Vcpkmt valosin containing protein lysine methyltransferase ENCODES a protein that exhibits ATPase binding (ortholog); protein methyltransferase activity (ortholog); protein-lysine N-methyltransferase activity (ortholog); INVOLVED IN negative regulation of ATP-dependent activity (ortholog); peptidyl-lysine methylation (ortholog); peptidyl-lysine trimethylation (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); L-2-hydroxyglutaric aciduria (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); protein-containing complex (ortholog) NW_004955409 12622259 12632246 + 102024880 AGCD01009556;GBDF01026892;XM_005376830;XM_005376831 XP_005376887;XP_005376888 MODEL 8808506 protein-coding Ppp1r14b protein phosphatase 1 regulatory inhibitor subunit 14B ENCODES a protein that exhibits phosphatase inhibitor activity (ortholog); protein phosphatase regulator activity (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); melanoma (ortholog) NW_004955422 20832224 20834317 + 102022305 AGCD01023092;GBDI01006659;GBDJ01006929;XM_005384972 XP_005385029 MODEL 8817217 protein-coding Sacm1l SAC1 like phosphatidylinositide phosphatase ENCODES a protein that exhibits phosphatase activity (ortholog); phosphatidylinositol-3,5-bisphosphate phosphatase activity (ortholog); phosphatidylinositol-3-phosphate phosphatase activity (ortholog); INVOLVED IN exocytic insertion of neurotransmitter receptor to postsynaptic membrane (ortholog); neurotransmitter receptor transport to postsynaptic membrane (ortholog); phosphatidylinositol dephosphorylation (ortholog); ASSOCIATED WITH Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog) NW_004955420 26231597 26280516 - 102006918 AGCD01021396;AGCD01021397;AGCD01021398;GBDI01179708;XM_005383470 XP_005383527 MODEL 8747049 protein-coding LOC102015193 uncharacterized LOC102015193 NW_004955474 8565715 8574633 - 102015193 AGCD01054555;GBDK01388404;XM_005401422;XM_013523091 XP_005401479;XP_013378545 MODEL 39133578 mirna MIR330 microRNA 330 39132352 snrna U6 U6 spliceosomal RNA 10205732 ncrna LOC106150349 uncharacterized LOC106150349 NW_004955406 42051672 42055469 - 106150349 AGCD01006696;GBDI01085493;XR_001237116 MODEL 8891853 protein-coding LOC102028672 WW domain-binding protein 5-like NW_004955516 2398397 2399314 - 102028672 AGCD01067455;XM_013506906 XP_013362360 MODEL 8935277 ncrna LOC102009117 uncharacterized LOC102009117 NW_004955563 897520 906409 - 102009117 AGCD01074095;GBDF01019723;XR_001232368;XR_265015 MODEL 8733865 protein-coding Znf331 zinc finger protein 331 ASSOCIATED WITH Arsenic Poisoning (ortholog); skin disease (ortholog) NW_004955604 383914 409033 - 102019008 AGCD01076896;AGCD01076897;AGCD01076898;GBBH01193009;GBDF01010462;XM_013510094 XP_013365548 MODEL 8936852 protein-coding Tmprss15 transmembrane serine protease 15 ASSOCIATED WITH Alzheimer's disease (ortholog); Congenital, Hereditary, and Neonatal Diseases and Abnormalities (ortholog); enterokinase deficiency (ortholog) NW_004955407 19510453 19626668 - 102005898 AGCD01007306;AGCD01007307;AGCD01007308;AGCD01007309;AGCD01007310;XM_005375963 XP_005376020 MODEL 39131561 protein-coding SCO2 SCO cytochrome c oxidase assembly protein 2 9035258 protein-coding Lmx1b LIM homeobox transcription factor 1 beta ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN camera-type eye development (ortholog); cell population proliferation (ortholog); central nervous system neuron development (ortholog); ASSOCIATED WITH clubfoot (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); FOUND IN nucleus (ortholog) NW_004955419 1782566 1857375 - 102010371 AGCD01019658;AGCD01019659;GBCE01047362;XM_005382450;XM_005382451 XP_005382507;XP_005382508 MODEL 8801140 pseudo LOC102007529 pre-mRNA-splicing factor CWC22 homolog NW_004955465 13700490 13703481 - 102007529 AGCD01050618;AGCD01050619 MODEL 8876955 protein-coding Phf1 PHD finger protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); histone H3K36me3 reader activity (ortholog); histone H3K4me3 reader activity (ortholog); INVOLVED IN DNA repair-dependent chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); MHC class I deficiency (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); ESC/E(Z) complex (ortholog) NW_004955437 1943049 1947027 + 102005174 AGCD01034245;GBCE01032712;GBDF01089862;XM_013517021 XP_013372475 MODEL 10264762 ncrna LOC106150350 uncharacterized LOC106150350 NW_004955474 6477484 6487122 - 106150350 AGCD01054479;AGCD01054480;GBCQ01029606;XR_001237118;XR_001237119 MODEL 10330606 ncrna LOC106146869 uncharacterized LOC106146869 NW_004955500 1996035 1999156 - 106146869 AGCD01063692;GBDF01179114;XR_001231471 MODEL 8781623 ncrna LOC102020339 uncharacterized LOC102020339 NW_004955417 27291344 27294537 - 102020339 AGCD01018545;GBDF01290011;XR_260505 MODEL 8892284 protein-coding LOC102019420 vomeronasal type-1 receptor 90-like NW_004955429 12493906 12494835 - 102019420 AGCD01028722;XM_005387252 XP_005387309 MODEL 8763919 pseudo LOC102017827 dnaJ homolog subfamily A member 1 pseudogene NW_004955448 18477355 18478527 + 102017827 AGCD01041746 MODEL 8753263 protein-coding Terf2 telomeric repeat binding factor 2 ENCODES a protein that exhibits double-stranded telomeric DNA binding (ortholog); enzyme binding (ortholog); G-rich strand telomeric DNA binding (ortholog); INVOLVED IN axonal transport of messenger ribonucleoprotein complex (ortholog); in utero embryonic development (ortholog); negative regulation of cellular senescence (ortholog); ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN chromosome, telomeric region (ortholog); male germ cell nucleus (ortholog); nuclear body (ortholog) NW_004955484 7318813 7344221 + 102029400 AGCD01058325;AGCD01058326;AGCD01058327;GBDF01082280;XM_005403561;XM_005403563 XP_005403618;XP_005403620 MODEL 8981930 protein-coding Phf10 PHD finger protein 10 INVOLVED IN embryonic brain development (ortholog); nervous system development (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; FOUND IN npBAF complex (ortholog); nucleoplasm (ortholog) NW_004955411 3911966 3926995 + 102020540 AGCD01011562;GBCB01002453;GBCB01043927;XM_005377636 XP_005377693 MODEL 8936219 ncrna LOC102006097 uncharacterized LOC102006097 NW_004955456 4283151 4286706 - 102006097 AGCD01046296;GBDF01251661;XR_262881 MODEL 8962065 pseudo LOC102015195 proteasome subunit alpha type-1-like NW_004955415 32528920 32529748 + 102015195 AGCD01016725 MODEL 8999679 protein-coding Spata45 spermatogenesis associated 45 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955406 4702976 4731424 + 102018798 AGCD01005701;AGCD01005702;GBDF01182659;XM_005374735 XP_005374792 MODEL 39132972 snrna U6 U6 spliceosomal RNA 39131588 mirna MIR331 microRNA 331 8842986 protein-coding LOC102007211 60S ribosomal protein L9-like NW_004955468 1922431 1924783 + 102007211 AGCD01051787;GBDF01014892;XM_005399914 XP_005399971 MODEL 8821582 pseudo LOC102021205 CDC42 small effector protein 2-like NW_004955405 14824051 14824304 + 102021205 AGCD01004933 MODEL 8740660 protein-coding Gpr156 G protein-coupled receptor 156 INVOLVED IN stereocilium bundle organization (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); Autosomal Recessive Nonsyndromic Deafness 121 (ortholog); Hearing Loss (ortholog); FOUND IN plasma membrane (ortholog) NW_004955427 19742505 19796288 - 102023502 AGCD01027376;AGCD01027377;AGCD01027378;AGCD01027379;GBDF01187294;XM_005386463 XP_005386520 MODEL 8925843 protein-coding LOC102023929 olfactory receptor 18-like NW_004955495 692210 700229 + 102023929 AGCD01061650;XM_013505045 XP_013360499 MODEL 8960409 pseudo LOC102007532 60S ribosomal protein L6 pseudogene NW_004955412 12501193 12501804 - 102007532 AGCD01012820 MODEL 9009185 protein-coding LOC102022512 EKC/KEOPS complex subunit LAGE3-like NW_004955498 2623974 2625284 + 102022512 AGCD01062813;GBDF01081721;XM_005406401 XP_005406458 MODEL 8765042 protein-coding Scoc short coiled-coil protein INVOLVED IN positive regulation of macroautophagy (ortholog); regulation of protein complex stability (ortholog); FOUND IN endosome (ortholog); Golgi apparatus (ortholog); nucleoplasm (ortholog) NW_004955428 3404372 3435653 - 102014926 AGCD01027657;GBDF01082674;XM_005386676;XM_005386677 XP_005386733;XP_005386734 MODEL 8927714 protein-coding Lnp1 leukemia NUP98 fusion partner 1 ASSOCIATED WITH NEURODEVELOPMENTAL DISORDER WITH EPILEPSY AND HYPOPLASIA OF THE CORPUS CALLOSUM (ortholog) NW_004955427 1929092 1956878 + 102021577 AGCD01026886;AGCD01026887;GBDF01000484;XM_005386296 XP_005386353 MODEL 8850916 ncrna LOC102018185 uncharacterized LOC102018185 NW_004955481 6299681 6301761 - 102018185 AGCD01057023;GBCE01032788;XR_263784 MODEL 8872743 protein-coding Skor1 SKI family transcriptional corepressor 1 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); SMAD binding (ortholog); INVOLVED IN negative regulation of BMP signaling pathway (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog); nucleus (ortholog) NW_004955450 8184843 8195626 - 102005094 AGCD01042563;AGCD01042564;GBDF01124401;XM_013518829 XP_013374283 MODEL 8897533 ncrna LOC102023931 uncharacterized LOC102023931 NW_004955424 13408061 13417300 + 102023931 AGCD01024633;GBDF01238765;XR_261062 MODEL 8946223 ncrna LOC102003268 uncharacterized LOC102003268 NW_004955431 22677734 22698546 + 102003268 AGCD01030517;AGCD01030518;GBDF01235025;XR_001234627;XR_261493 MODEL 8996167 protein-coding LOC102024956 olfactory receptor 11H6-like NW_004955550 806384 813858 + 102024956 AGCD01072523;XM_005412139 XP_005412196 MODEL 8752967 pseudo LOC102012190 heat shock factor-binding protein 1 pseudogene NW_004955415 16038711 16039206 + 102012190 AGCD01016366;XM_005380832 MODEL 8711974 protein-coding Wwc2 WW and C2 domain containing 2 ENCODES a protein that exhibits kinase binding (ortholog); molecular adaptor activity (ortholog); signaling adaptor activity (ortholog); INVOLVED IN hippo signaling (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of hippo signaling (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955403 25482601 25602412 - 102011268 AGCD01002289;AGCD01002290;AGCD01002291;GBDK01018936;XM_013513141 XP_013368595 MODEL 8811701 pseudo LOC102025920 bleomycin hydrolase pseudogene NW_004955422 24103732 24105230 - 102025920 AGCD01023215 MODEL 9030742 ncrna LOC102023595 uncharacterized LOC102023595 NW_004955417 28744265 28772463 - 102023595 AGCD01018584;AGCD01018585;AGCD01018586;GBDF01225899;XR_001233406;XR_260509;XR_260510 MODEL 9061448 ncrna LOC102009859 uncharacterized LOC102009859 NW_004955427 7919836 7924927 + 102009859 AGCD01027059;GBDF01303674;XR_001234333;XR_001234334 MODEL 9001999 protein-coding Epor erythropoietin receptor ENCODES a protein that exhibits erythropoietin receptor activity (ortholog); identical protein binding (ortholog); INVOLVED IN brain development (ortholog); cellular response to kainic acid (ortholog); decidualization (ortholog); PARTICIPATES IN erythropoietin signaling pathway; ASSOCIATED WITH alpha-mannosidosis (ortholog); Alzheimer's disease (ortholog); anemia (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); nuclear speck (ortholog) NW_004955495 2293587 2299302 - 102022714 AGCD01061763;GBCQ01062324;XM_005405664 XP_005405721 MODEL 39133466 snrna U4 U4 spliceosomal RNA 39133710 mirna MIR335 microRNA 335 8713356 protein-coding Unk unk zinc finger ENCODES a protein that exhibits mRNA CDS binding (ortholog); ribosome binding (ortholog); INVOLVED IN cell morphogenesis involved in neuron differentiation (ortholog); in utero embryonic development (ortholog); negative regulation of cytoplasmic translation (ortholog); ASSOCIATED WITH peroxisomal acyl-CoA oxidase deficiency (ortholog); FOUND IN cytoplasm (ortholog) NW_004955506 6424638 6470406 - 102012224 AGCD01065420;AGCD01065421;AGCD01065422;AGCD01065423;AGCD01065424;AGCD01065425;AGCD01065426;GBDK01004322;XM_005407478 XP_005407535 MODEL 8905112 protein-coding Spata46 spermatogenesis associated 46 INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN nuclear membrane (ortholog) NW_004955462 13950726 13953765 + 102013912 AGCD01049435;GBCE01083721;XM_005398276;XM_005398277 XP_005398333;XP_005398334 MODEL 8802498 protein-coding LOC102025923 zinc finger protein 561-like NW_004955495 1061087 1095931 - 102025923 AGCD01061671;AGCD01061672;AGCD01061673;GBDF01305511;XM_013505080;XM_013505081 XP_013360534;XP_013360535 MODEL 10236602 ncrna LOC106150351 uncharacterized LOC106150351 NW_004955474 6774840 6777950 - 106150351 AGCD01054494;GBCQ01123458;XR_001237120 MODEL 10350543 ncrna LOC106146870 uncharacterized LOC106146870 NW_004955500 6576882 6579611 + 106146870 AGCD01063886;XR_001231472 MODEL 8735089 protein-coding LOC102013407 uncharacterized LOC102013407 NW_004955415 13302201 13314397 + 102013407 AGCD01016246;GBDF01006431;XM_005380747;XM_005380748;XM_005380749;XR_001233193;XR_001233194;XR_001233195;XR_001233196;XR_260288 XP_005380804;XP_005380805;XP_005380806 MODEL 39133467 snrna U4 U4 spliceosomal RNA 8803642 protein-coding Bfar bifunctional apoptosis regulator ENCODES a protein that exhibits caspase binding (ortholog); protein-macromolecule adaptor activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of IRE1-mediated unfolded protein response (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); FOUND IN endoplasmic reticulum (ortholog); membrane (ortholog) NW_004955442 4229236 4255623 - 102016103 AGCD01037524;AGCD01037525;GBBH01140244;XM_005391133 XP_005391190 MODEL 8800499 protein-coding Vdac1 voltage dependent anion channel 1 ENCODES a protein that exhibits ceramide binding (ortholog); cholesterol binding (ortholog); identical protein binding (ortholog); INVOLVED IN apoptotic process (ortholog); behavioral fear response (ortholog); calcium import into the mitochondrion (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Diabetic Nephropathies (ortholog); epilepsy (ortholog); FOUND IN membrane (ortholog); mitochondrial membrane (ortholog); mitochondrial nucleoid (ortholog) NW_004955408 5260444 5275972 - 102010030 AGCD01008129;GBBH01031077;GBCE01029736;XM_013508448 XP_013363902 MODEL 405822139 mirna MIR337 microRNA 337 10256848 ncrna LOC106149137 uncharacterized LOC106149137 NW_004955437 20061265 20062050 - 106149137 AGCD01034868;XR_001235102 MODEL 9057264 ncrna LOC102017828 uncharacterized LOC102017828 NW_004955402 45460545 45502507 - 102017828 AGCD01001136;AGCD01001137;AGCD01001138;AGCD01001139;AGCD01001140;GBDF01236164;XR_259092 MODEL 10231715 protein-coding LOC106146871 testis-specific H1 histone INVOLVED IN sperm DNA condensation (ortholog); spermatid nucleus elongation (ortholog); FOUND IN chromatin (ortholog); male germ cell nucleus (ortholog); nucleus (ortholog) NW_004955500 7329361 7329842 - 106146871 AGCD01063913;GBDF01006450;XM_013505653 XP_013361107 MODEL 8852591 protein-coding Lnpep leucyl and cystinyl aminopeptidase ENCODES a protein that exhibits aminopeptidase activity (ortholog); INVOLVED IN negative regulation of cold-induced thermogenesis (ortholog); neuropeptide catabolic process (ortholog); peptide catabolic process (ortholog); PARTICIPATES IN angiotensin IV signaling pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; long term potentiation; ASSOCIATED WITH breast cancer (ortholog); Diabetic Nephropathies (ortholog); Endometrial Neoplasms (ortholog); FOUND IN cell surface (ortholog); cytoplasmic vesicle membrane (ortholog); insulin-responsive compartment (ortholog) NW_004955418 15631703 15718711 - 102009282 AGCD01019109;AGCD01019110;AGCD01019111;GBBH01187295;XM_005382222 XP_005382279 MODEL 8728733 ncrna LOC102006098 uncharacterized LOC102006098 NW_004955456 14622794 14651850 - 102006098 AGCD01046645;AGCD01046646;GBDF01252370;XR_001236327;XR_001236328;XR_001236329;XR_001236330;XR_262904;XR_262905 MODEL 39133468 snrna U4 U4 spliceosomal RNA 9060251 pseudo LOC102016951 RING-box protein 2-like NW_004955437 727904 728183 - 102016951 AGCD01034157;XM_005389441 MODEL 8878450 ncrna LOC102028675 uncharacterized LOC102028675 NW_004955436 5519886 5521032 - 102028675 AGCD01033679;GBDF01088989;XR_001234996 MODEL 8701894 ncrna LOC102023932 uncharacterized LOC102023932 NW_004955497 4837987 4866672 + 102023932 AGCD01062586;GBDF01305446;XR_264206 MODEL 10254366 ncrna LOC106146872 uncharacterized LOC106146872 NW_004955500 4864774 4865747 + 106146872 AGCD01063813;XR_001231487 MODEL 39133469 snrna U4 U4 spliceosomal RNA 8868273 pseudo LOC102023933 DNA repair protein complementing XP-A cells-like NW_004955424 22539704 22540854 - 102023933 AGCD01024975 MODEL 8703187 protein-coding LOC102017830 WAP four-disulfide core domain protein 18-like NW_004955451 195886 200393 + 102017830 AGCD01042928;GBCC01009398;XM_005393904;XM_005393905 XP_005393961;XP_005393962 MODEL 8786384 protein-coding Lnpk lunapark, ER junction formation factor ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN blood coagulation (ortholog); embryonic digit morphogenesis (ortholog); embryonic forelimb morphogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); NEURODEVELOPMENTAL DISORDER WITH EPILEPSY AND HYPOPLASIA OF THE CORPUS CALLOSUM (ortholog); split hand-foot malformation 5 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum tubular network membrane (ortholog) NW_004955403 20654961 20728173 + 102012266 AGCD01002171;GBDF01144184;XM_005373417;XM_005373418;XM_013512809;XM_013512812;XM_013512816;XM_013512822 XP_005373474;XP_005373475;XP_013368263;XP_013368266;XP_013368270;XP_013368276 MODEL 8729168 protein-coding Sgsh N-sulfoglucosamine sulfohydrolase ENCODES a protein that exhibits N-sulfoglucosamine sulfohydrolase activity (ortholog); sulfuric ester hydrolase activity (ortholog); INVOLVED IN determination of adult lifespan (ortholog); glycosaminoglycan catabolic process (ortholog); heparan sulfate proteoglycan catabolic process (ortholog); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); Developmental Disabilities (ortholog); diarrhea (ortholog); FOUND IN lysosomal lumen (ortholog); lysosome (ortholog) NW_004955506 2701901 2713431 + 102019718 AGCD01065301;GBDJ01225391;XM_005407325;XM_005407326;XM_013505991;XM_013505992;XM_013505993;XR_264337;XR_264338 XP_005407382;XP_005407383;XP_013361445;XP_013361446;XP_013361447 MODEL 9043028 ncrna LOC102007536 uncharacterized LOC102007536 NW_004955468 11575980 11579208 - 102007536 AGCD01052135;GBDF01249875;XR_263412;XR_263413 MODEL 8904755 protein-coding LOC102022513 melanoma-associated antigen 10-like NW_004955498 4139854 4140936 - 102022513 AGCD01062973;XM_013505525 XP_013360979 MODEL 8741846 ncrna LOC102023935 uncharacterized LOC102023935 NW_004955502 469240 476212 + 102023935 AGCD01064242;GBDK01349222;XR_001231529 MODEL 10085203 ncrna LOC106150352 uncharacterized LOC106150352 NW_004955474 391121 400335 - 106150352 AGCD01054217;XR_001237121;XR_001237122 MODEL 8999985 protein-coding Skor2 SKI family transcriptional corepressor 2 ENCODES a protein that exhibits chromatin binding (ortholog); histone deacetylase binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell development (ortholog); cerebellar Purkinje cell differentiation (ortholog); cerebellum morphogenesis (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); Dysarthria (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955402 32577189 32618611 - 102027366 AGCD01000826;AGCD01000827;GBDF01021613;XM_013510345 XP_013365799 MODEL 8850588 protein-coding LOC102005770 endothelin-converting enzyme-like 1 NW_004955453 3471402 3489839 + 102005770 AGCD01044659;AGCD01044660;AGCD01044661;GBBH01082477;GBDJ01085717;XM_013519999;XM_013520000 XP_013375453;XP_013375454 MODEL 8726064 protein-coding Bfsp1 beaded filament structural protein 1 ENCODES a protein that exhibits structural constituent of eye lens (ortholog); INVOLVED IN cell maturation (ortholog); intermediate filament organization (ortholog); lens fiber cell development (ortholog); ASSOCIATED WITH cataract (ortholog); cataract 33 (ortholog); coloboma (ortholog); FOUND IN cytoplasm (ortholog); intermediate filament (ortholog); plasma membrane (ortholog) NW_004955415 26507381 26535545 - 102009495 AGCD01016596;AGCD01016597;AGCD01016598;GBCE01168540;XM_005380906;XM_013512110 XP_005380963;XP_013367564 MODEL 39132974 snrna U6 U6 spliceosomal RNA 8947445 protein-coding Sgsm1 small G protein signaling modulator 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle membrane (ortholog); cytosol (ortholog) NW_004955455 258472 343079 - 102011400 AGCD01045555;GBDF01281537;XM_005396135;XM_005396136 XP_005396192;XP_005396193 MODEL 8700055 ncrna LOC102023600 uncharacterized LOC102023600 NW_004955483 8636126 8641695 + 102023600 AGCD01057841;GBCB01042012;XR_263871;XR_263873 MODEL 8882210 protein-coding LOC102021207 testis-specific serine/threonine-protein kinase 1-like NW_004955406 11748669 11750078 + 102021207 AGCD01005895;GBDF01003285;XM_005374829 XP_005374886 MODEL 8777785 ncrna LOC102016952 uncharacterized LOC102016952 NW_004955437 5607041 5616393 - 102016952 AGCD01034396;GBDF01111806;XR_261852;XR_261853 MODEL 9053678 protein-coding Ksr2 kinase suppressor of ras 2 ENCODES a protein that exhibits MAP-kinase scaffold activity (ortholog); mitogen-activated protein kinase kinase binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); positive regulation of cold-induced thermogenesis (ortholog); positive regulation of MAPK cascade (ortholog); PARTICIPATES IN the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); maturity-onset diabetes of the young type 1 (ortholog); morbid obesity (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955455 13375306 13777681 + 102021310 AGCD01046071;AGCD01046072;AGCD01046073;AGCD01046074;GBDF01067170;XM_013520300;XM_013520301 XP_013375754;XP_013375755 MODEL 39132976 snrna U6 U6 spliceosomal RNA 8971984 ncrna LOC102023602 uncharacterized LOC102023602 NW_004955420 10924063 10957818 - 102023602 AGCD01020796;GBDF01145322;XR_260699 MODEL 9017971 protein-coding Ppp1r14c protein phosphatase 1 regulatory inhibitor subunit 14C ENCODES a protein that exhibits protein serine/threonine phosphatase inhibitor activity (ortholog); ASSOCIATED WITH Coronavirus infectious disease (ortholog); FOUND IN membrane (ortholog) NW_004955439 11142520 11238660 - 102005843 AGCD01035892;AGCD01035893;GBDI01117555;XM_005390591;XM_013517322;XM_013517323;XR_001235188;XR_001235189;XR_001235190;XR_001235191;XR_001235192;XR_001235193;XR_261978;XR_261979 XP_005390648;XP_013372776;XP_013372777 MODEL 9063294 protein-coding LOC102019422 pancreatic triacylglycerol lipase-like NW_004955431 21351823 21373520 + 102019422 AGCD01030496;XM_005387907 XP_005387964 MODEL 8987810 protein-coding LOC102021211 olfactory receptor 6C3-like NW_004955458 2762135 2763079 + 102021211 AGCD01047243;XM_005397501 XP_005397558 MODEL 39132353 snrna U6 U6 spliceosomal RNA 8854523 protein-coding Scp2 sterol carrier protein 2 ENCODES a protein that exhibits acetyl-CoA C-acyltransferase activity (ortholog); acetyl-CoA C-myristoyltransferase activity (ortholog); cholesterol binding (ortholog); INVOLVED IN alpha-linolenic acid metabolic process (ortholog); bile acid metabolic process (ortholog); cellular response to cholesterol (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH dystonia (ortholog); Experimental Diabetes Mellitus (ortholog); leukodystrophy (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); mitochondrion (ortholog) NW_004955464 6097241 6224287 - 102014223 AGCD01050018;AGCD01050019;GBCQ01008435;XM_005398565;XM_005398566 XP_005398622;XP_005398623 MODEL 9054408 protein-coding LOC102017831 protocadherin alpha-4-like NW_004955611 288464 291968 + 102017831 AGCD01077159;XM_013510123 XP_013365577 MODEL 8807199 protein-coding Spata6 spermatogenesis associated 6 ENCODES a protein that exhibits myosin light chain binding (ortholog); INVOLVED IN motile cilium assembly (ortholog); spermatogenesis (ortholog); FOUND IN sperm head-tail coupling apparatus (ortholog) NW_004955464 10225661 10340528 + 102004580 AGCD01050120;AGCD01050121;AGCD01050122;AGCD01050123;AGCD01050124;GBDF01002413;XM_005398629;XM_005398630 XP_005398686;XP_005398687 MODEL 9035656 protein-coding Taf13 TATA-box binding protein associated factor 13 ENCODES a protein that exhibits DNA binding (ortholog); TBP-class protein binding (ortholog); INVOLVED IN mRNA transcription by RNA polymerase II (ortholog); positive regulation of transcription initiation by RNA polymerase II (ortholog); RNA polymerase II preinitiation complex assembly (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive intellectual developmental disorder 60 (ortholog); genetic disease (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955435 12488578 12496894 - 102023068 AGCD01033149;GBBH01069822;XM_005388844 XP_005388901 MODEL 8750241 protein-coding LOC102007537 apolipoprotein L3-like NW_004955413 22864060 22868517 - 102007537 AGCD01014318;XM_013511300 XP_013366754 MODEL 8716118 protein-coding LOC102008692 olfactory receptor 5P3-like NW_004955453 4970345 4985354 - 102008692 AGCD01044701;XM_013519758 XP_013375212 MODEL 39132354 snrna U6 U6 spliceosomal RNA 8908705 protein-coding Vdac2 voltage dependent anion channel 2 ENCODES a protein that exhibits ceramide binding (ortholog); cholesterol binding (ortholog); oxysterol binding (ortholog); INVOLVED IN binding of sperm to zona pellucida (ortholog); mitochondrial outer membrane permeabilization (ortholog); mitochondrial transmembrane transport (ortholog); ASSOCIATED WITH Burns (ortholog); Diabetic Nephropathies (ortholog); epilepsy (ortholog); FOUND IN acrosomal vesicle (ortholog); membrane (ortholog); membrane raft (ortholog) NW_004955437 16857715 16871717 - 102027230 AGCD01034715;GBDI01021446;XM_005389918;XM_005389920 XP_005389975;XP_005389977 MODEL 8936224 protein-coding LOC102007212 C-reactive protein NW_004955468 11525824 11527555 - 102007212 AGCD01052134;XM_013522300 XP_013377754 MODEL 8972021 pseudo LOC102023937 melanoma inhibitory activity protein 3-like NW_004955427 21263088 21265995 - 102023937 AGCD01027439 MODEL 10386964 ncrna LOC106150353 uncharacterized LOC106150353 NW_004955474 6849183 6898851 - 106150353 AGCD01054497;AGCD01054498;AGCD01054499;AGCD01054500;AGCD01054501;AGCD01054502;AGCD01054503;GBDF01076972;XR_001237123 MODEL 8911879 protein-coding LOC102006100 TIR domain-containing adapter molecule 2 ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); negative regulation of chemokine (C-C motif) ligand 5 production (ortholog); negative regulation of toll-like receptor 4 signaling pathway (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN early endosome (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955408 35342733 35382821 - 102006100 AGCD01008938;AGCD01008939;GBBH01033904;GBDK01342442;XM_005376595 XP_005376652 MODEL 9008976 protein-coding LOC102020340 histone H1t-like NW_004955483 926053 926748 + 102020340 AGCD01057637;GBDF01277700;XM_005403307 XP_005403364 MODEL 39132355 snrna U6 U6 spliceosomal RNA 8956513 protein-coding Hycc1 hyccin PI4KA lipid kinase complex subunit 1 INVOLVED IN myelination (ortholog); phosphatidylinositol phosphate biosynthetic process (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH genetic disease (ortholog); hypomyelinating leukodystrophy 5 (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog); neuron projection (ortholog); plasma membrane (ortholog) NW_004955410 25274360 25342112 - 102010039 AGCD01011150;AGCD01011151;GBDF01086043;XM_005377384;XM_005377387;XM_005377389;XM_013510581 XP_005377441;XP_005377444;XP_005377446;XP_013366035 MODEL 39133470 snrna U4 U4 spliceosomal RNA 10099459 ncrna LOC106146873 uncharacterized LOC106146873 NW_004955500 6653484 6654185 + 106146873 AGCD01063889;GBDK01054207;XR_001231488 MODEL 8815179 protein-coding LOC102016955 olfactory receptor 11G2-like NW_004955550 781264 782202 - 102016955 AGCD01072522;XM_005412036 XP_005412093 MODEL 8926974 ncrna LOC102020344 uncharacterized LOC102020344 NW_004955420 19033302 19040719 + 102020344 AGCD01021053;GBDJ01305271;XR_260724 MODEL 8745120 ncrna LOC102022516 uncharacterized LOC102022516 NW_004955425 24875518 24899720 - 102022516 AGCD01025896;AGCD01025897;AGCD01025898;GBDF01146023;XR_261169 MODEL 9061857 protein-coding LOC102023608 olfactory receptor-like protein OLF3 NW_004955491 271119 272075 + 102023608 AGCD01060326;XM_005404878 XP_005404935 MODEL 39133471 snrna U4 U4 spliceosomal RNA 8706189 pseudo LOC102021213 YEATS domain-containing protein 4-like NW_004955460 13231488 13238875 - 102021213 AGCD01048675;AGCD01048676 MODEL 10125684 protein-coding LOC106146874 uncharacterized LOC106146874 NW_004955500 6688460 6691942 + 106146874 AGCD01063891;GBDJ01083936;XM_013505662 XP_013361116 MODEL 9041331 pseudo LOC102022898 uracil-DNA glycosylase pseudogene NW_004955411 32287945 32288663 - 102022898 AGCD01012299 MODEL 10240238 ncrna LOC106149984 uncharacterized LOC106149984 NW_004955459 8412437 8438840 - 106149984 AGCD01048142;GBDF01207201;XR_001236489 MODEL 8844051 protein-coding Znf333 zinc finger protein 333 NW_004955415 31663213 31687372 - 102015628 AGCD01016692;GBDF01278026;XM_013512131 XP_013367585 MODEL 9016047 protein-coding LOC102009861 zinc finger protein 420-like NW_004955429 13414895 13444098 + 102009861 AGCD01028748;AGCD01028749;GBDF01252222;XM_013515503;XM_013515504;XM_013515505;XM_013515506 XP_013370957;XP_013370958;XP_013370959;XP_013370960 MODEL 8860302 pseudo LOC102020348 nucleophosmin pseudogene NW_004955492 6061344 6066275 + 102020348 AGCD01060762 MODEL 9042742 protein-coding Klf5 KLF transcription factor 5 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to endothelin (ortholog); cellular response to leukemia inhibitory factor (ortholog); ASSOCIATED WITH adenoma (ortholog); Cardiomegaly (ortholog); chromosome 13q14 deletion syndrome (ortholog); FOUND IN Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955404 33642604 33665445 - 102025534 AGCD01004072;AGCD01004073;GBDK01022609;XM_005374184 XP_005374241 MODEL 8701356 pseudo LOC102021214 interferon regulatory factor 8 pseudogene NW_004955409 1904386 1909564 + 102021214 AGCD01009184 MODEL 9050723 pseudo LOC102023940 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 pseudogene NW_004955511 2720046 2722099 - 102023940 AGCD01066427 MODEL 8761523 pseudo LOC102018191 elongation factor 1-alpha 1-like NW_004955487 4175137 4176506 - 102018191 AGCD01059300 MODEL 10271148 protein-coding LOC106150354 uncharacterized LOC106150354 NW_004955474 1588034 1590913 - 106150354 AGCD01054259;GBCB01018529;XM_013523093 XP_013378547 MODEL 8917460 pseudo LOC102013409 tubulin beta-4B chain pseudogene NW_004955415 32953159 32960953 + 102013409 AGCD01016743;AGCD01016744 MODEL 8772384 protein-coding LOC102021215 olfactory receptor 10AC1-like NW_004955460 10681262 10683096 - 102021215 AGCD01048600;XM_013521116 XP_013376570 MODEL 9042862 ncrna LOC102003269 uncharacterized LOC102003269 NW_004955515 5580629 5582659 - 102003269 AGCD01067363;AGCD01067364;GBDJ01129228;XR_264529 MODEL 8836956 pseudo LOC102016962 60S ribosomal protein L21 pseudogene NW_004955446 18952623 18953100 + 102016962 AGCD01040418 MODEL 8792843 protein-coding Ppp1r14d protein phosphatase 1 regulatory inhibitor subunit 14D ENCODES a protein that exhibits protein serine/threonine phosphatase inhibitor activity (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog) NW_004955416 7681138 7693644 - 102028187 AGCD01017001;AGCD01017002;AGCD01017003;GBDI01254082;XM_005381265;XM_013512622 XP_005381322;XP_013368076 MODEL 8918643 protein-coding LOC102024960 CD209 antigen-like protein 2 NW_004955563 1552850 1557386 + 102024960 AGCD01074152;GBDK01141948;XM_005413160;XM_013509183;XM_013509184 XP_005413217;XP_013364637;XP_013364638 MODEL 8880631 protein-coding Skp1 S-phase kinase associated protein 1 ENCODES a protein that exhibits beta-catenin binding (ortholog); cullin family protein binding (ortholog); F-box domain binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); maintenance of protein location in nucleus (ortholog); positive regulation of ubiquitin protein ligase activity (ortholog); PARTICIPATES IN Notch signaling pathway; nuclear factor kappa B signaling pathway; nuclear factor, erythroid 2 like 2 signaling pathway; ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Keratoconus 1 (ortholog); FOUND IN centrosome (ortholog); Cul7-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955408 5393851 5412644 - 102012613 AGCD01008133;AGCD01008134;GBBH01003740;GBCB01004285;XM_005376136 XP_005376193 MODEL 9023208 pseudo LOC102028676 nuclease-sensitive element-binding protein 1 pseudogene NW_004955529 1991654 1992398 - 102028676 AGCD01069717 MODEL 8994407 protein-coding LOC102022522 olfactory receptor 5M3-like NW_004955511 1626694 1627645 - 102022522 AGCD01066377;XM_013506375 XP_013361829 MODEL 8764131 protein-coding Bfsp2 beaded filament structural protein 2 ENCODES a protein that exhibits structural constituent of eye lens (ortholog); INVOLVED IN cell maturation (ortholog); cytoskeleton organization (ortholog); intermediate filament cytoskeleton organization (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); cataract (ortholog); cataract 12 multiple types (ortholog); FOUND IN cytoplasm (ortholog); intermediate filament (ortholog) NW_004955501 5083456 5145256 - 102030332 AGCD01064150;AGCD01064151;AGCD01064152;GBCE01061604;XM_005406819 XP_005406876 MODEL 10140543 protein-coding LOC106146875 uncharacterized LOC106146875 NW_004955500 1917926 1920429 + 106146875 AGCD01063689;AGCD01063690;GBDJ01263157;XM_013505672 XP_013361126 MODEL 9065771 protein-coding LOC102022900 secreted seminal-vesicle Ly-6 protein 1-like NW_004955412 26692125 26694761 + 102022900 AGCD01013209;GBDF01046724;XM_005378468 XP_005378525 MODEL 9060849 protein-coding Sacs sacsin molecular chaperone ENCODES a protein that exhibits Hsp70 protein binding (ortholog); identical protein binding (ortholog); low-density lipoprotein particle receptor binding (ortholog); INVOLVED IN negative regulation of inclusion body assembly (ortholog); ASSOCIATED WITH ATAXIA, SPASTIC, CHILDHOOD-ONSET, AUTOSOMAL RECESSIVE, WITH OPTIC ATROPHY AND MENTAL RETARDATION (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2C (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955497 3701515 3752627 - 102016491 AGCD01062552;AGCD01062553;GBCB01097721;GBCE01012315;XM_005406316 XP_005406373 MODEL 8789182 protein-coding Unkl unk like zinc finger ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); mucolipidosis III gamma (ortholog); FOUND IN cytosol (ortholog) NW_004955442 15827352 15870561 + 102008774 AGCD01037880;AGCD01037881;AGCD01037882;AGCD01037883;GBDK01004313;GBDK01004325;XM_005391581;XM_013517831 XP_005391638;XP_013373285 MODEL 8812874 protein-coding Terf2ip TERF2 interacting protein ENCODES a protein that exhibits telomeric DNA binding (ortholog); INVOLVED IN negative regulation of DNA recombination at telomere (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of NF-kappaB transcription factor activity (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); male germ cell nucleus (ortholog) NW_004955484 1917902 1924482 - 102017021 AGCD01058073;GBDK01235374;XM_005403434 XP_005403491 MODEL 39131591 mirna MIR339 microRNA 339 8842618 pseudo LOC102019436 60 kDa heat shock protein, mitochondrial pseudogene NW_004955439 9837307 9839540 - 102019436 AGCD01035844 MODEL 8820493 protein-coding LOC102015200 olfactory receptor 6F1-like NW_004955418 30472441 30473397 + 102015200 AGCD01019522;XM_005382377 XP_005382434 MODEL 8956886 protein-coding LOC102024560 transmembrane and coiled-coil domain-containing protein 5B-like NW_004955416 1323376 1331862 + 102024560 AGCD01016833;GBDF01043273;XM_005381168 XP_005381225 MODEL 10351725 ncrna LOC106149138 uncharacterized LOC106149138 NW_004955437 7860629 7862512 - 106149138 AGCD01034470;XR_001235107 MODEL 10334436 protein-coding LOC106150355 uncharacterized LOC106150355 NW_004955474 1872990 1884124 + 106150355 AGCD01054268;AGCD01054269;XM_013523096 XP_013378550 MODEL 8858681 pseudo LOC102012193 proteasome subunit alpha type-6 pseudogene NW_004955416 8425977 8426698 - 102012193 AGCD01017052 MODEL 8863518 pseudo LOC102023941 TBC1 domain family member 13 pseudogene NW_004955429 18891038 18896873 - 102023941 AGCD01028927;AGCD01028928 MODEL 8859452 pseudo LOC102013413 peptidyl-prolyl cis-trans isomerase-like 4 pseudogene NW_004955417 10686148 10688391 + 102013413 AGCD01018086 MODEL 8775586 protein-coding LOC102007543 tripartite motif-containing protein 5-like NW_004955414 21602756 21610062 - 102007543 AGCD01015424;XM_013511732 XP_013367186 MODEL 8731161 protein-coding Gpr157 G protein-coupled receptor 157 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN circadian behavior (ortholog); phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); radial glial cell differentiation (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN ciliary membrane (ortholog) NW_004955486 4172515 4188887 + 102022607 AGCD01059057;GBBH01066894;GBCB01001213;XM_005404310 XP_005404367 MODEL 9045847 protein-coding Des desmin ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN intermediate filament organization (ortholog); nuclear envelope organization (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); Animal Mammary Neoplasms (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); FOUND IN cardiac myofibril (ortholog); cell tip (ortholog); cell-cell junction (ortholog) NW_004955453 14039502 14046572 - 102006976 AGCD01044857;GBDK01160362;XM_005395527 XP_005395584 MODEL 8752494 protein-coding LOC102015202 histone H2B type 1 NW_004955483 802067 802869 - 102015202 AGCD01057632;XM_005403291 XP_005403348 MODEL 9064063 protein-coding Nefl neurofilament light chain ENCODES a protein that exhibits identical protein binding (ortholog); phospholipase binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); axonal transport of mitochondrion (ortholog); axonogenesis (ortholog); ASSOCIATED WITH acute disseminated encephalomyelitis (ortholog); AIDS Dementia Complex (ortholog); Alzheimer's disease (ortholog); FOUND IN axon (ortholog); cholinergic synapse (ortholog); cytoplasm (ortholog) NW_004955403 47946413 47951734 - 102021934 AGCD01002904;GBDI01079979;XM_005373709;XM_005373710 XP_005373766;XP_005373767 MODEL 10153364 ncrna LOC106149139 uncharacterized LOC106149139 NW_004955404 33230281 33257708 - 106149139 AGCD01004059;XR_001235109 MODEL 10118807 ncrna LOC106149985 uncharacterized LOC106149985 NW_004955406 17722370 17778855 - 106149985 AGCD01006015;GBDK01363875;XR_001236490 MODEL 8955413 protein-coding LOC102020351 myb-like protein X NW_004955422 19494472 19511742 + 102020351 AGCD01023011;AGCD01023012;AGCD01023013;GBDI01385675;XM_005384968;XM_013513852 XP_005385025;XP_013369306 MODEL 8735283 protein-coding Kti12 KTI12 chromatin associated homolog NW_004955464 7082211 7084748 + 102022174 AGCD01050053;GBCE01122911;XM_005398591 XP_005398648 MODEL 8818367 protein-coding Lonp1 lon peptidase 1, mitochondrial ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); mitochondrion organization (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); ASSOCIATED WITH brain ischemia (ortholog); cataract (ortholog); CODAS syndrome (ortholog); FOUND IN cytosol (ortholog); mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog) NW_004955495 3712173 3729556 + 102024354 AGCD01061879;GBDI01075951;XM_005405760;XM_013505197 XP_005405817;XP_013360651 MODEL 39132978 snrna U6 U6 spliceosomal RNA 8970783 protein-coding LOC102009862 olfactory receptor 1440 NW_004955511 3826101 3827067 - 102009862 AGCD01066477;XM_005408060 XP_005408117 MODEL 8989147 protein-coding Lnx1 ligand of numb-protein X 1 ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN synapse maturation (ortholog); ubiquitin-dependent protein catabolic process (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH head and neck squamous cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); postsynapse (ortholog) NW_004955447 17154026 17265067 + 102010749 AGCD01041114;AGCD01041115;AGCD01041116;GBBH01019203;XM_005392901;XM_005392902;XM_005392903;XM_013518520 XP_005392958;XP_005392959;XP_005392960;XP_013373974 MODEL 39132356 snrna U6 U6 spliceosomal RNA 8827411 protein-coding LOC102020353 olfactory receptor 7G2-like NW_004955495 181711 182661 - 102020353 AGCD01061606;XM_005406116 XP_005406173 MODEL 8805867 ncrna LOC102018192 uncharacterized LOC102018192 NW_004955491 8497950 8499449 - 102018192 AGCD01060616;GBDF01057299;XR_264041;XR_264042 MODEL 39132980 snrna U6 U6 spliceosomal RNA 8871459 protein-coding Scp2d1 SCP2 sterol binding domain containing 1 ASSOCIATED WITH familial hyperinsulinemic hypoglycemia 1 (ortholog) NW_004955415 27215991 27229799 + 102018922 AGCD01016623;AGCD01016624;GBDF01010710;XM_005380936;XM_013512406;XM_013512407 XP_005380993;XP_013367860;XP_013367861 MODEL 8826901 protein-coding Spata6l spermatogenesis associated 6 like ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog) NW_004955434 8893132 8956994 - 102024946 AGCD01032278;AGCD01032279;AGCD01032280;AGCD01032281;GBBH01089885;XM_005388637;XM_005388638;XM_005388639;XM_005388640 XP_005388694;XP_005388695;XP_005388696;XP_005388697 MODEL 8958449 protein-coding LOC102009864 olfactory receptor 4D11-like NW_004955511 3981204 3982139 + 102009864 AGCD01066484;XM_005408268 XP_005408325 MODEL 39133671 snrna U4 U4 spliceosomal RNA 9043342 pseudo LOC102020355 prefoldin subunit 4 pseudogene NW_004955500 8267493 8270378 - 102020355 AGCD01063985;AGCD01063986 MODEL 8907598 pseudo LOC102007214 treacle protein pseudogene NW_004955413 22801161 22804226 + 102007214 AGCD01014317 MODEL 8992249 ncrna LOC102003275 uncharacterized LOC102003275 NW_004955435 19660196 19672146 - 102003275 AGCD01033436;GBBH01155403;XR_001234913;XR_001234914;XR_001234915 MODEL 8720263 pseudo LOC102025925 stathmin pseudogene NW_004955500 7348048 7348466 + 102025925 AGCD01063916 MODEL 8778621 protein-coding Znf335 zinc finger protein 335 ENCODES a protein that exhibits histone methyltransferase binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN brain development (ortholog); brain morphogenesis (ortholog); cerebral cortex neuron differentiation (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); Aminoacylase 1 Deficiency (ortholog); autistic disorder (ortholog); FOUND IN histone methyltransferase complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955445 11334742 11354584 + 102023645 AGCD01039687;GBBH01169576;XM_005392394;XM_005392395;XM_005392396;XM_005392397;XM_013518292 XP_005392451;XP_005392452;XP_005392453;XP_005392454;XP_013373746 MODEL 9004368 protein-coding Ppp1r15a protein phosphatase 1 regulatory subunit 15A ENCODES a protein that exhibits eukaryotic initiation factor eIF2 binding (ortholog); protein kinase binding (ortholog); protein phosphatase 1 binding (ortholog); INVOLVED IN cellular response to antibiotic (ortholog); cellular response to calcium ion starvation (ortholog); cellular response to carbohydrate stimulus (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Acute-On-Chronic Liver Failure (ortholog); Amaurosis Fugax (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955559 1750227 1753607 - 102029674 AGCD01073666;GBCQ01101763;XM_005412927 XP_005412984 MODEL 8779538 pseudo LOC102022523 anaphase-promoting complex subunit 10 pseudogene NW_004955431 2848411 2848968 + 102022523 AGCD01029941;XR_261443 MODEL 8899235 ncrna LOC102015205 uncharacterized LOC102015205 NW_004955420 17649991 17670098 + 102015205 AGCD01021026;GBCQ01174712;XR_001233823 MODEL 8910470 protein-coding Skp2 S-phase kinase associated protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN cellular response to cell-matrix adhesion (ortholog); defense response to virus (ortholog); G1/S transition of mitotic cell cycle (ortholog); PARTICIPATES IN Notch signaling pathway; p53 signaling pathway; ASSOCIATED WITH Brain Injuries (ortholog); breast cancer (ortholog); cervix uteri carcinoma in situ (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955426 20972663 20999769 + 102011338 AGCD01026576;GBDF01112275;XM_005386206;XM_005386207 XP_005386263;XP_005386264 MODEL 8784710 ncrna LOC102026966 uncharacterized LOC102026966 NW_004955414 33724952 33727587 + 102026966 AGCD01015822;GBDF01252654;XR_260235 MODEL 8951920 protein-coding Klf6 KLF transcription factor 6 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN cellular response to endothelin (ortholog); cellular response to hydrogen peroxide (ortholog); cytokine-mediated signaling pathway (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); Hypotension (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); fibrillar center (ortholog) NW_004955429 1838537 1846915 + 102026341 AGCD01028409;GBDJ01008132;XM_005386866 XP_005386923 MODEL 10135406 ncrna LOC106149140 uncharacterized LOC106149140 NW_004955437 362815 365580 + 106149140 AGCD01034126;GBBH01088490;XR_001235110 MODEL 8947631 pseudo LOC102017837 uncharacterized LOC102017837 NW_004955404 7713697 7732135 - 102017837 AGCD01003342 MODEL 8752508 protein-coding Eppk1 epiplakin 1 ENCODES a protein that exhibits intermediate filament binding (ortholog); keratin filament binding (ortholog); INVOLVED IN cytoskeleton organization (ortholog); intermediate filament bundle assembly (ortholog); intermediate filament organization (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); Chloracne (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); FOUND IN apicolateral plasma membrane (ortholog); basal part of cell (ortholog); bicellular tight junction (ortholog) NW_004955454 2512151 2526080 - 102015600 AGCD01045022;GBCE01166943;XM_005395819 XP_005395876 MODEL 8779079 ncrna LOC102005772 uncharacterized LOC102005772 NW_004955407 30090339 30104892 - 102005772 AGCD01007625;GBDF01113497;XR_259594 MODEL 8951110 pseudo LOC102024561 xenotropic and polytropic retrovirus receptor 1 pseudogene NW_004955478 9436576 9442072 + 102024561 AGCD01056071 MODEL 8711720 ncrna LOC102023612 uncharacterized LOC102023612 NW_004955493 7795315 7798040 - 102023612 AGCD01061227;GBDF01039121;XR_001231264 MODEL 39132357 snrna U6 U6 spliceosomal RNA 8798903 protein-coding LOC102024961 leucine-rich repeat-containing protein 48 NW_004955577 3864 12133 - 102024961 AGCD01075377;GBBH01116997;GBBH01117003;XM_013509640 XP_013365094 MODEL 9012675 ncrna LOC102017839 uncharacterized LOC102017839 NW_004955405 39617278 39622813 - 102017839 AGCD01005502;GBDF01252390;XR_001235917 MODEL 8825690 protein-coding Sgsm2 small G protein signaling modulator 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN late endosome to Golgi transport (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); melanosome (ortholog) NW_004955481 871719 907326 - 102010902 AGCD01056816;GBDF01081055;XM_005402592;XM_005402593;XM_005402594 XP_005402649;XP_005402650;XP_005402651 MODEL 8933148 protein-coding LOC102007544 seminal plasma acrosin inhibitor A1-like NW_004955415 5997416 6041627 + 102007544 AGCD01016005;AGCD01016006;AGCD01016007;AGCD01016008;AGCD01016009;GBDJ01337989;XM_005380645;XM_005380648;XM_005380649;XM_013512381;XM_013512382;XM_013512383;XM_013512384;XM_013512385 XP_005380702;XP_005380705;XP_005380706;XP_013367835;XP_013367836;XP_013367837;XP_013367838;XP_013367839 MODEL 8986950 protein-coding Scpep1 serine carboxypeptidase 1 ENCODES a protein that exhibits serine-type carboxypeptidase activity (ortholog); INVOLVED IN blood vessel diameter maintenance (ortholog); negative regulation of blood pressure (ortholog); retinoic acid metabolic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hereditary breast ovarian cancer syndrome (ortholog); Joubert syndrome 1 (ortholog) NW_004955451 5847371 5876286 - 102011933 AGCD01043182;AGCD01043183;AGCD01043184;GBCE01000239;XM_005394064 XP_005394121 MODEL 8949342 pseudo LOC102009866 U2 small nuclear ribonucleoprotein B'' pseudogene NW_004955512 1307791 1314557 + 102009866 AGCD01066638 MODEL 8911167 protein-coding Gpr158 G protein-coupled receptor 158 ENCODES a protein that exhibits enzyme activator activity (ortholog); G protein-coupled glycine receptor activity (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN brain development (ortholog); cognition (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog); postsynaptic density membrane (ortholog) NW_004955429 3641764 4053860 - 102006800 AGCD01028469;AGCD01028470;AGCD01028471;AGCD01028472;AGCD01028473;AGCD01028474;AGCD01028475;AGCD01028476;AGCD01028477;AGCD01028478;AGCD01028479;GBCB01051533;XM_005386897 XP_005386954 MODEL 39132359 snrna U6 U6 spliceosomal RNA 8961290 protein-coding LOC102013416 butyrophilin subfamily 2 member A2 NW_004955483 413795 498359 - 102013416 AGCD01057609;AGCD01057610;AGCD01057611;AGCD01057612;AGCD01057613;AGCD01057614;AGCD01057615;AGCD01057616;AGCD01057617;AGCD01057618;AGCD01057619;GBDJ01002979;XM_005403285;XM_013503774;XM_013503775;XM_013503776;XM_013503777;XM_013503779;XM_013503780;XM_013503781 XP_005403342;XP_013359228;XP_013359229;XP_013359230;XP_013359231;XP_013359233;XP_013359234;XP_013359235 MODEL 9037863 ncrna LOC102022901 uncharacterized LOC102022901 NW_004955467 4366751 4390108 - 102022901 AGCD01051364;AGCD01051365;GBDF01026954;XR_001236834;XR_263333 MODEL 8874445 protein-coding Wwc3 WWC family member 3 ENCODES a protein that exhibits kinase binding (ortholog); molecular adaptor activity (ortholog); signaling adaptor activity (ortholog); INVOLVED IN hippo signaling (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of hippo signaling (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955544 3012602 3126518 - 102008666 AGCD01071747;AGCD01071748;GBCE01023937;GBCQ01101676;XM_005411401 XP_005411458 MODEL 8935220 protein-coding Sgsm3 small G protein signaling modulator 3 ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN plasma membrane to endosome transport (ortholog); positive regulation of GTPase activity (ortholog); positive regulation of protein catabolic process (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); autistic disorder (ortholog); Rubinstein-Taybi syndrome (ortholog); FOUND IN cytosol (ortholog); gap junction (ortholog) NW_004955413 26094170 26139062 + 102008837 AGCD01014423;AGCD01014424;GBDF01054066;XM_005379314;XM_005379315;XM_005379318;XM_005379319;XM_005379320;XM_005379321;XM_013511485;XM_013511486 XP_005379371;XP_005379372;XP_005379375;XP_005379376;XP_005379377;XP_005379378;XP_013366939;XP_013366940 MODEL 8996406 pseudo LOC102009870 deoxycytidine kinase-like NW_004955435 5992632 5993789 - 102009870 AGCD01032903 MODEL 405822141 protein-coding SCPPPQ1 secretory calcium-binding phosphoprotein proline-glutamine rich 1 8747425 protein-coding Gpr15lg G protein-coupled receptor 15 ligand ENCODES a protein that exhibits chemokine activity (ortholog); G protein-coupled receptor binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN defense response to fungus (ortholog); defense response to Gram-positive bacterium (ortholog); G protein-coupled receptor signaling pathway (ortholog); FOUND IN extracellular region (ortholog) NW_004955510 3697163 3703108 + 102004098 AGCD01066247;GBCQ01122690;XM_005407881 XP_005407938 MODEL 39133733 mirna MIR33A microRNA 33a 9019993 protein-coding LOC102015206 PRAME family member 8-like NW_004955486 484558 487683 + 102015206 AGCD01058858;XM_013504138 XP_013359592 MODEL 8932291 protein-coding Ktn1 kinectin 1 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955466 13664312 13747368 - 102010141 AGCD01051180;AGCD01051181;AGCD01051182;AGCD01051183;GBCB01002346;XM_005399233;XM_005399234;XM_013521982;XM_013521983;XM_013521984 XP_005399290;XP_005399291;XP_013377436;XP_013377437;XP_013377438 MODEL 8887140 protein-coding LOC102013418 actin-like NW_004955420 22322153 22323606 - 102013418 AGCD01021196;GBCQ01147818;XM_013513570 XP_013369024 MODEL 8989141 ncrna LOC102009882 uncharacterized LOC102009882 NW_004955545 1976556 1983940 - 102009882 AGCD01071876;AGCD01071877;GBDI01212919;XR_001232185 MODEL 39133643 mirna MIR340 microRNA 340 8735196 protein-coding Gpr160 G protein-coupled receptor 160 ASSOCIATED WITH autosomal dominant dyskeratosis congenita 1 (ortholog); Fanconi-Bickel syndrome (ortholog); FOUND IN plasma membrane (ortholog); receptor complex (ortholog) NW_004955420 295670 354872 + 102018400 AGCD01020540;AGCD01020541;GBDI01227916;XM_005382977;XM_013513441;XM_013513442;XM_013513443;XR_001233719 XP_005383034;XP_013368895;XP_013368896;XP_013368897 MODEL 8983166 protein-coding Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha ENCODES a protein that exhibits BAT3 complex binding (ortholog); identical protein binding (ortholog); INVOLVED IN chaperone-mediated protein folding (ortholog); ERAD pathway (ortholog); negative regulation of ERAD pathway (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog); RASopathy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extrinsic component of synaptic vesicle membrane (ortholog) NW_004955495 5025038 5051810 - 102018300 AGCD01061970;AGCD01061971;AGCD01061972;GBCE01081756;XM_005405830;XM_005405831;XM_005405832;XM_013505255;XM_013505256;XM_013505257 XP_005405887;XP_005405888;XP_005405889;XP_013360709;XP_013360710;XP_013360711 MODEL 8748283 protein-coding LOC102015209 olfactory receptor 4B1-like NW_004955422 284748 304833 - 102015209 AGCD01022402;GBCQ01059871;GBDF01155592;XM_013513821 XP_013369275 MODEL 8966312 protein-coding Scrg1 stimulator of chondrogenesis 1 INVOLVED IN mesenchymal stem cell proliferation (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); neuron projection terminus (ortholog) NW_004955403 33599197 33626095 + 102025072 AGCD01002457;GBDI01141301;XM_005373540 XP_005373597 MODEL 8869097 protein-coding Bglap bone gamma-carboxyglutamate protein ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); hormone activity (ortholog); INVOLVED IN bone development (ortholog); brain development (ortholog); cellular response to BMP stimulus (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH asthma (ortholog); autosomal dominant hypocalcemia (ortholog); Bone Fractures (ortholog); FOUND IN cell projection (ortholog); collagen-containing extracellular matrix (ortholog); cytoplasm (ortholog) NW_004955545 2381091 2382114 + 102022427 AGCD01071898;GBDJ01042544;XM_005411659 XP_005411716 MODEL 8728890 protein-coding LOC102009120 leukocyte-associated immunoglobulin-like receptor 1 NW_004955567 1481960 1491331 - 102009120 AGCD01074476;GBBH01229034;XM_013509284;XM_013509285;XM_013509286;XM_013509287;XM_013509288 XP_013364738;XP_013364739;XP_013364740;XP_013364741;XP_013364742 MODEL 39132277 mirna MIR342 microRNA 342 8828563 protein-coding LOC102024963 serpin B4 NW_004955402 47448710 47456197 - 102024963 AGCD01001183;GBBH01007337;XM_005373033 XP_005373090 MODEL 8846541 protein-coding LOC102015212 guanine nucleotide-binding protein-like 1 NW_004955494 7475377 7475985 + 102015212 AGCD01061553;GBCQ01041918;GBDI01007809;XM_013504939 XP_013360393 MODEL 9005974 protein-coding Upb1 beta-ureidopropionase 1 ENCODES a protein that exhibits beta-ureidopropionase activity (ortholog); protein homodimerization activity (ortholog); zinc ion binding (ortholog); INVOLVED IN beta-alanine biosynthetic process via 3-ureidopropionate (ortholog); beta-alanine metabolic process (ortholog); CMP catabolic process (ortholog); PARTICIPATES IN beta-alanine metabolic pathway; beta-ureidopropionase deficiency pathway; carnosinemia pathway; ASSOCIATED WITH autistic disorder (ortholog); Beta-Ureidopropionase Deficiency (ortholog); celiac disease (ortholog); FOUND IN cytosol (ortholog) NW_004955455 7961296 7992235 + 102030599 AGCD01045866;AGCD01045867;AGCD01045868;GBDF01235833;XM_005396387;XM_013520494 XP_005396444;XP_013375948 MODEL 8717483 protein-coding Gpr161 G protein-coupled receptor 161 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 25 (ortholog); medulloblastoma (ortholog); FOUND IN cilium (ortholog); glial cell projection (ortholog); neuron projection (ortholog) NW_004955462 8981729 9034009 + 102019895 AGCD01049331;AGCD01049332;GBDF01156462;XM_005398214;XM_005398215;XM_005398216;XM_005398217;XM_005398218;XM_005398219;XM_013521419;XM_013521420 XP_005398271;XP_005398272;XP_005398273;XP_005398274;XP_005398275;XP_005398276;XP_013376873;XP_013376874 MODEL 9066439 pseudo LOC102026971 ZZ-type zinc finger-containing protein 3 pseudogene NW_004955415 6097467 6098636 - 102026971 AGCD01016012 MODEL 9010642 protein-coding Ppp1r15b protein phosphatase 1 regulatory subunit 15B ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); INVOLVED IN ER overload response (ortholog); negative regulation of protein phosphorylation (ortholog); response to endoplasmic reticulum stress (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); familial adult myoclonic epilepsy 5 (ortholog); FOUND IN protein phosphatase type 1 complex (ortholog) NW_004955406 40232516 40238711 - 102024874 AGCD01006658;GBDF01119554;XM_013522788 XP_013378242 MODEL 8885974 pseudo LOC102023942 olfactory receptor 4C15-like NW_004955511 210327 211363 + 102023942 AGCD01066323 MODEL 8962710 pseudo LOC102012194 single-stranded DNA-binding protein 2 pseudogene NW_004955477 6506741 6507624 - 102012194 AGCD01055610 MODEL 8716274 protein-coding LOC102016964 vomeronasal type-2 receptor 26-like NW_004955584 764198 810131 + 102016964 AGCD01075958;AGCD01075959;AGCD01075960;AGCD01075961;GBDJ01214238;XM_013509866;XM_013509867 XP_013365320;XP_013365321 MODEL 9007476 protein-coding LOC102028677 protein LEG1 homolog NW_004955436 8600317 8623884 - 102028677 AGCD01033743;XM_013516597 XP_013372051 MODEL 8802790 protein-coding LOC102005777 uncharacterized LOC102005777 NW_004955408 35127767 35155131 - 102005777 AGCD01008930;XM_013507575 XP_013363029 MODEL 8776744 protein-coding LOC102023613 taste receptor type 2 member 41-like NW_004955494 115686 185165 - 102023613 AGCD01061355;AGCD01061356;AGCD01061357;AGCD01061358;AGCD01061359;AGCD01061360;AGCD01061361;AGCD01061362;AGCD01061363;AGCD01061364;AGCD01061365;AGCD01061366;AGCD01061367;AGCD01061368;GBDF01288832;XM_013504913 XP_013360367 MODEL 9049307 ncrna LOC102017844 uncharacterized LOC102017844 NW_004955407 37132665 37188696 - 102017844 AGCD01007778;AGCD01007779;GBDF01281780;XR_001231639;XR_001231640;XR_001231642;XR_259617 MODEL 39132360 snrna U6 U6 spliceosomal RNA 8968855 ncrna LOC102012196 uncharacterized LOC102012196 NW_004955417 7422583 7435827 - 102012196 AGCD01018004;GBDF01079001;XR_260462 MODEL 8838530 protein-coding Tert telomerase reverse transcriptase ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); DNA biosynthetic process (ortholog); DNA strand elongation (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); adrenocortical carcinoma (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955504 649248 669796 - 102020268 AGCD01064824;AGCD01064825;GBDI01054113;GBDI01187681;XM_013505898 XP_013361352 MODEL 8880539 protein-coding Lonp2 lon peptidase 2, peroxisomal ENCODES a protein that exhibits enzyme binding (ortholog); peptidase activity (ortholog); protease binding (ortholog); INVOLVED IN protein processing (ortholog); protein targeting to peroxisome (ortholog); regulation of fatty acid beta-oxidation (ortholog); ASSOCIATED WITH BURATTI-HAREL SYNDROME (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); peroxisomal matrix (ortholog) NW_004955474 6991371 7084008 - 102007888 AGCD01054512;AGCD01054513;GBDI01079460;XM_005401402 XP_005401459 MODEL 10139358 protein-coding LOC106149141 uncharacterized LOC106149141 NW_004955437 7933285 7936292 + 106149141 AGCD01034476;GBDF01203998;XM_013517125;XM_013517126;XR_001235112;XR_001235113 XP_013372579;XP_013372580 MODEL 8871697 protein-coding Scrib scribble planar cell polarity protein ENCODES a protein that exhibits signaling adaptor activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); apoptotic process involved in morphogenesis (ortholog); astrocyte cell migration (ortholog); PARTICIPATES IN Wnt signaling, the planar cell polarity pathway; ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); FOUND IN adherens junction (ortholog); basolateral plasma membrane (ortholog); cell junction (ortholog) NW_004955454 2461526 2482734 - 102023554 AGCD01045021;AGCD01045022;GBBH01187694;GBCQ01067678;XM_013520053 XP_013375507 MODEL 8904212 protein-coding LOC102022902 histone H2B type 2-F NW_004955413 905879 907831 + 102022902 AGCD01013494;GBDF01049953;XM_005378711 XP_005378768 MODEL 8893952 ncrna LOC102018193 uncharacterized LOC102018193 NW_004955492 8662680 8668236 + 102018193 AGCD01060823;GBCB01028339;XR_264060 MODEL 8997329 ncrna LOC102012202 uncharacterized LOC102012202 NW_004955420 8650206 8667134 - 102012202 AGCD01020729;AGCD01020730;GBDF01286252;XR_260684 MODEL 9028890 protein-coding Klf7 KLF transcription factor 7 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN axon guidance (ortholog); axonogenesis (ortholog); dendrite morphogenesis (ortholog); ASSOCIATED WITH anxiety disorder (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955457 7833711 7918754 + 102013254 AGCD01046890;AGCD01046891;AGCD01046892;GBBH01137501;XM_005396985;XM_005396986 XP_005397042;XP_005397043 MODEL 39132982 snrna U6 U6 spliceosomal RNA 8935804 protein-coding LOC102015213 tumor necrosis factor receptor superfamily member 26-like NW_004955422 14742490 14751804 - 102015213 AGCD01022864;GBDK01165152;XM_005384957 XP_005385014 MODEL 8911148 pseudo LOC102006101 serine incorporator 3-like NW_004955459 2481300 2493364 - 102006101 AGCD01047991 MODEL 10270163 ncrna LOC106146876 uncharacterized LOC106146876 NW_004955500 1708679 1738641 + 106146876 AGCD01063675;AGCD01063676;AGCD01063677;AGCD01063678;AGCD01063679;GBCE01115030;XR_001231490 MODEL 8856738 protein-coding Upf1 UPF1 RNA helicase and ATPase ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); chromatin binding (ortholog); double-stranded DNA helicase activity (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); cell cycle phase transition (ortholog); DNA repair (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Developmental Disease (ortholog); dextro-looped transposition of the great arteries (ortholog); FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); cytosol (ortholog) NW_004955524 2798336 2814063 - 102007269 AGCD01068837;GBBH01062074;GBDI01063025;XM_013507221;XM_013507222;XM_013507223;XM_013507224 XP_013362675;XP_013362676;XP_013362677;XP_013362678 MODEL 9001856 pseudo LOC102020359 40S ribosomal protein S2 pseudogene NW_004955428 23371700 23372590 - 102020359 AGCD01028222 MODEL 9001131 ncrna LOC102023943 uncharacterized LOC102023943 NW_004955512 697363 707004 + 102023943 AGCD01066620;GBDF01041142;XR_264439 MODEL 9000119 pseudo LOC102009886 39S ribosomal protein L32, mitochondrial pseudogene NW_004955442 7886469 7887029 + 102009886 AGCD01037628 MODEL 9039140 protein-coding Scrn1 secernin 1 INVOLVED IN regulation of synaptic vesicle cycle (ortholog); ASSOCIATED WITH osteoarthritis (ortholog); pleomorphic xanthoastrocytoma (ortholog); prostate cancer (ortholog); FOUND IN nuclear membrane (ortholog); nucleus (ortholog); presynapse (ortholog) NW_004955410 31231418 31299772 - 102016990 AGCD01011318;AGCD01011319;AGCD01011320;AGCD01011321;GBDF01048678;GBDK01305177;XM_013510669 XP_013366123 MODEL 9032736 protein-coding Klf8 KLF transcription factor 8 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN aggresome (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955475 2938071 2998435 + 102027402 AGCD01054822;AGCD01054823;AGCD01054824;GBCE01084134;XM_005401541 XP_005401598 MODEL 8890055 protein-coding Nefm neurofilament medium chain ENCODES a protein that exhibits protein-containing complex binding (ortholog); signaling receptor binding (ortholog); toxic substance binding (ortholog); INVOLVED IN axo-dendritic transport (ortholog); axon regeneration (ortholog); cellular response to estradiol stimulus (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); congenital hypothyroidism (ortholog); FOUND IN axon (ortholog); cytoskeleton (ortholog); intermediate filament (ortholog) NW_004955403 47920408 47926922 + 102021617 AGCD01002903;XM_005373708 XP_005373765 MODEL 8941536 ncrna LOC102006108 uncharacterized LOC102006108 NW_004955411 31891671 31897535 - 102006108 AGCD01012289;GBDK01379399;XR_001232822;XR_001232823 MODEL 8784974 protein-coding LOC102007547 cystatin-C-like NW_004955415 30648683 30672114 + 102007547 AGCD01016666;GBBH01008067;XM_005380977;XM_005380978;XM_013512401;XM_013512402;XM_013512403 XP_005381034;XP_005381035;XP_013367855;XP_013367856;XP_013367857 MODEL 9023713 protein-coding Znf34 zinc finger protein 34 ASSOCIATED WITH Recombinant Chromosome 8 Syndrome (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955454 3400373 3413521 + 102019979 AGCD01045073;AGCD01045074;AGCD01045075;GBCC01031518;XM_005395935;XM_005395936;XM_005395937 XP_005395992;XP_005395993;XP_005395994 MODEL 8816780 ncrna LOC102019438 uncharacterized LOC102019438 NW_004955441 14696516 14714360 + 102019438 AGCD01037214;AGCD01037215;AGCD01037216;GBDF01130381;XR_262081 MODEL 8944881 pseudo LOC102024965 olfactory receptor 7G1-like NW_004955600 449662 450665 + 102024965 AGCD01076723 MODEL 8881813 pseudo LOC102006110 brain mitochondrial carrier protein 1 pseudogene NW_004955411 25443595 25445484 + 102006110 AGCD01012158 MODEL 8942833 protein-coding Znf341 zinc finger protein 341 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity (ortholog); ASSOCIATED WITH glutathione synthetase deficiency (ortholog); glutatione synthetase deficiency with 5-oxoprolinuria (ortholog); hyper IgE recurrent infection syndrome 3 (ortholog); FOUND IN nucleus (ortholog) NW_004955422 27537293 27583713 - 102030209 AGCD01023326;AGCD01023327;GBBH01214449;GBCB01056827;XM_013514211 XP_013369665 MODEL 9033806 protein-coding Tes testin LIM domain protein ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH breast cancer (ortholog); childhood acute lymphocytic leukemia (ortholog); colitis (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955432 21992708 22035441 + 102010400 AGCD01031245;AGCD01031246;GBCE01096721;XM_005388117;XM_005388118;XM_005388119 XP_005388174;XP_005388175;XP_005388176 MODEL 8707172 pseudo LOC102007219 tRNA methyltransferase 10 homolog B pseudogene NW_004955472 2140534 2143118 - 102007219 AGCD01053437 MODEL 9019030 protein-coding Tmprss2 transmembrane serine protease 2 INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH prostate adenocarcinoma (ortholog); prostatic hypertrophy (ortholog); severe acute respiratory syndrome (ortholog) NW_004955407 40958562 40985415 - 102023435 AGCD01007853;AGCD01007854;GBDI01006008;XM_005375854;XM_005375855;XM_013505291;XM_013505295;XM_013505300 XP_005375911;XP_005375912;XP_013360745;XP_013360749;XP_013360754 MODEL 10381707 ncrna LOC106149986 uncharacterized LOC106149986 NW_004955459 15441364 15449019 - 106149986 AGCD01048322;GBDF01248965;XR_001236491;XR_001236492 MODEL 39132986 snrna U6 U6 spliceosomal RNA 8910937 protein-coding Hycc2 hyccin PI4KA lipid kinase complex subunit 2 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Pulmonary Arterial Hypertension (ortholog); Weight Gain (ortholog) NW_004955403 483671 564509 + 102025420 AGCD01001693;AGCD01001694;AGCD01001695;AGCD01001696;GBBH01118959;XM_005373218;XM_005373219;XM_005373220;XM_005373221;XM_005373222;XM_005373223;XM_005373224;XM_005373225;XM_005373226;XM_005373227 XP_005373275;XP_005373276;XP_005373277;XP_005373278;XP_005373279;XP_005373280;XP_005373281;XP_005373282;XP_005373283;XP_005373284 MODEL 8977350 ncrna LOC102028680 uncharacterized LOC102028680 NW_004955540 2070310 2077368 - 102028680 AGCD01071312;GBCQ01151530;XR_264824 MODEL 10095730 ncrna LOC106146877 uncharacterized LOC106146877 NW_004955500 1784124 1788916 + 106146877 AGCD01063687;GBDI01051044;XR_001231491 MODEL 8916355 ncrna LOC102022525 uncharacterized LOC102022525 NW_004955513 4826030 4833311 - 102022525 AGCD01066940;GBDK01062957;XR_001231759;XR_264480 MODEL 8795015 ncrna LOC102023617 uncharacterized LOC102023617 NW_004955426 24389136 24391879 + 102023617 AGCD01026678;GBDF01237121;XR_261220 MODEL 8804392 pseudo LOC102017846 heat shock cognate 71 kDa protein-like NW_004955407 35524223 35534029 - 102017846 AGCD01007744;AGCD01007745 MODEL 150537107 mirna MIR345 microRNA 345 10121486 ncrna LOC106149987 uncharacterized LOC106149987 NW_004955459 11592159 11647074 + 106149987 AGCD01048233;GBDF01277077;XR_001236494 MODEL 8969718 pseudo LOC102023619 etoposide-induced protein 2.4 homolog pseudogene NW_004955427 20971315 20972479 + 102023619 AGCD01027429 MODEL 10260487 protein-coding LOC106146878 endogenous retrovirus group K member 11 Pol protein-like NW_004955402 16725458 16726342 + 106146878 AGCD01000486;XM_013505849 XP_013361303 MODEL 8958421 ncrna LOC102007549 uncharacterized LOC102007549 NW_004955480 6536847 6538193 - 102007549 AGCD01056685;GBDJ01269916;XR_263745 MODEL 9024593 protein-coding Gpr162 G protein-coupled receptor 162 ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); peroxisome biogenesis disorder 2B (ortholog) NW_004955413 4425609 4428901 + 102029607 AGCD01013614;GBBH01052036;GBCE01002891;XM_013511324 XP_013366778 MODEL 39133701 mirna MIR346 microRNA 346 9019508 pseudo LOC102018199 cyclin-G1 pseudogene NW_004955425 7631390 7649613 + 102018199 AGCD01025391 MODEL 8706583 protein-coding LOC102012203 dual specificity protein phosphatase 5-like NW_004955485 904628 909295 - 102012203 AGCD01058465;GBDK01430993;XM_005403917 XP_005403974 MODEL 10345198 protein-coding LOC106146879 putative SCAN domain-containing protein SCAND2P NW_004955500 6978893 6980066 + 106146879 AGCD01063896;GBDF01043348;XM_013505688 XP_013361142 MODEL 8914562 protein-coding Sae1 SUMO1 activating enzyme subunit 1 ENCODES a protein that exhibits ATP-dependent protein binding (ortholog); protein heterodimerization activity (ortholog); small protein activating enzyme binding (ortholog); INVOLVED IN positive regulation of protein sumoylation (ortholog); positive regulation of protein targeting to mitochondrion (ortholog); protein sumoylation (ortholog); FOUND IN nucleoplasm (ortholog); SUMO activating enzyme complex (ortholog) NW_004955574 1090446 1158266 + 102005089 AGCD01075153;AGCD01075154;AGCD01075155;AGCD01075156;AGCD01075157;AGCD01075158;GBDF01002543;XM_005413849 XP_005413906 MODEL 8921678 pseudo LOC102007550 thioredoxin pseudogene NW_004955417 25525969 25526425 + 102007550 AGCD01018486 MODEL 8905403 protein-coding Tesc tescalcin ENCODES a protein that exhibits calcium ion binding (ortholog); magnesium ion binding (ortholog); phosphatase inhibitor activity (ortholog); INVOLVED IN cellular response to retinoic acid (ortholog); male gonad development (ortholog); megakaryocyte development (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lamellipodium (ortholog) NW_004955455 14053918 14092637 + 102023114 AGCD01046082;GBBH01033835;XM_005396547;XM_005396548 XP_005396604;XP_005396605 MODEL 150537127 mirna MIR34A microRNA 34a 8954909 ncrna LOC102023945 uncharacterized LOC102023945 NW_004955515 4861093 4881722 - 102023945 AGCD01067332;GBDI01105897;XR_001231796;XR_001231797;XR_001231798;XR_264526 MODEL 8864466 protein-coding Gpr17 G protein-coupled receptor 17 ENCODES a protein that exhibits receptor serine/threonine kinase binding (ortholog); INVOLVED IN negative regulation of inflammatory response to antigenic stimulus (ortholog); oligodendrocyte differentiation (ortholog); ASSOCIATED WITH autosomal dominant thrombophilia due to protein C deficiency (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2W (ortholog); brain infarction (ortholog) NW_004955459 2890266 2903053 - 102027152 AGCD01048004;GBCQ01043373;XM_005397595;XM_005397596;XM_013521049 XP_005397652;XP_005397653;XP_013376503 MODEL 8823344 protein-coding Sla Src like adaptor PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH autoimmune thyroiditis (ortholog); benign neonatal seizures (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog) NW_004955461 7622501 7643008 - 102014427 AGCD01048921;GBDI01326913;XM_005398022 XP_005398079 MODEL 8995171 pseudo LOC102020361 hydroxysteroid dehydrogenase-like protein 2 NW_004955429 12779665 12781865 + 102020361 AGCD01028730 MODEL 10079551 ncrna LOC106146880 uncharacterized LOC106146880 NW_004955500 4435362 4440519 + 106146880 AGCD01063791;AGCD01063792;XR_001231492 MODEL 8861831 pseudo LOC102022528 integral membrane protein GPR180 pseudogene NW_004955432 3205501 3206196 + 102022528 AGCD01030638 MODEL 8998563 protein-coding Negr1 neuronal growth regulator 1 INVOLVED IN brain development (ortholog); cell-cell adhesion (ortholog); cholesterol homeostasis (ortholog); ASSOCIATED WITH intellectual disability (ortholog); obesity (ortholog); scrapie (ortholog); FOUND IN apical dendrite (ortholog); dendrite (ortholog); dendritic shaft (ortholog) NW_004955423 20011488 20816686 + 102004292 AGCD01023915;AGCD01023916;AGCD01023917;AGCD01023918;AGCD01023919;AGCD01023920;AGCD01023921;AGCD01023922;AGCD01023923;AGCD01023924;AGCD01023925;AGCD01023926;AGCD01023927;AGCD01023928;AGCD01023929;AGCD01023930;GBBH01135146;XM_005385243 XP_005385300 MODEL 9031868 pseudo LOC102017847 E3 ubiquitin-protein ligase XIAP pseudogene NW_004955458 3142433 3143246 + 102017847 AGCD01047274 MODEL 39133672 snrna U4 U4 spliceosomal RNA 8773861 protein-coding Gpr171 G protein-coupled receptor 171 ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); neuropeptide binding (ortholog); neuropeptide receptor activity (ortholog); INVOLVED IN adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); negative regulation of myeloid cell differentiation (ortholog); ASSOCIATED WITH glycogen storage disease XV (ortholog); FOUND IN plasma membrane (ortholog) NW_004955448 2335560 2341261 - 102003501 AGCD01041281;GBDK01265611;XM_005393029 XP_005393086 MODEL 8951047 protein-coding Sla2 Src like adaptor 2 ENCODES a protein that exhibits signaling adaptor activity (ortholog); INVOLVED IN negative regulation of calcium-mediated signaling (ortholog); negative regulation of T cell receptor signaling pathway (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); FOUND IN cytoplasmic vesicle (ortholog); Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955422 24978447 25003732 + 102022398 AGCD01023239;GBDI01326113;XM_005384738;XM_005384739 XP_005384795;XP_005384796 MODEL 10219519 ncrna LOC106146881 uncharacterized LOC106146881 NW_004955500 4421077 4439437 - 106146881 AGCD01063790;AGCD01063791;AGCD01063792;GBDK01203704;XR_001231493 MODEL 8993937 pseudo LOC102005778 small nuclear ribonucleoprotein Sm D1 pseudogene NW_004955458 15135529 15136459 - 102005778 AGCD01047865 MODEL 9050634 protein-coding Taf15 TATA-box binding protein associated factor 15 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); RNA binding (ortholog); INVOLVED IN gene expression (ortholog); mRNA stabilization (ortholog); RNA splicing (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH chondrosarcoma (ortholog); Disease Progression (ortholog); extraskeletal myxoid chondrosarcoma (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955481 10242839 10274961 + 102021127 AGCD01057138;GBDF01080958;XM_005402892;XM_013503452 XP_005402949;XP_013358906 MODEL 39133673 snrna U4 U4 spliceosomal RNA 8982300 protein-coding LOC102007220 olfactory receptor 52H1-like NW_004955414 21459569 21460513 - 102007220 AGCD01015420;XM_005380497 XP_005380554 MODEL 39132987 snrna U6 U6 spliceosomal RNA 8833028 ncrna LOC102012206 uncharacterized LOC102012206 NW_004955421 24912739 24916609 - 102012206 AGCD01022223;XR_260826 MODEL 8948060 protein-coding LOC102009890 kallikrein-4-like NW_004955558 2014462 2080060 + 102009890 AGCD01073496;AGCD01073497;AGCD01073498;AGCD01073499;AGCD01073500;AGCD01073501;AGCD01073502;AGCD01073503;AGCD01073504;AGCD01073505;AGCD01073506;AGCD01073507;AGCD01073508;AGCD01073509;XM_013508851 XP_013364305 MODEL 8946763 protein-coding LOC102028682 translation initiation factor IF-2-like NW_004955545 2561508 2565979 - 102028682 AGCD01071910;GBCB01103266;XM_005411677;XM_013508198;XM_013508199;XR_264875;XR_264876 XP_005411734;XP_013363652;XP_013363653 MODEL 8804704 pseudo LOC102026973 chromobox protein homolog 3 pseudogene NW_004955416 10476391 10476954 - 102026973 AGCD01017141 MODEL 8764998 protein-coding Tesk1 testis associated actin remodelling kinase 1 ENCODES a protein that exhibits protein kinase activity (ortholog); protein kinase binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN establishment of vesicle localization (ortholog); negative regulation of cilium assembly (ortholog); nuclear-transcribed mRNA catabolic process, no-go decay (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955472 670847 676060 - 102011651 AGCD01053346;AGCD01053347;GBBH01115775;GBCB01003173;XM_005401181 XP_005401238 MODEL 8893591 protein-coding Hydin HYDIN axonemal central pair apparatus protein INVOLVED IN axonemal central apparatus assembly (ortholog); brain development (ortholog); cilium movement (ortholog); ASSOCIATED WITH Asthenozoospermia (ortholog); autosomal dominant dyskeratosis congenita 6 (ortholog); genetic disease (ortholog); FOUND IN axonemal central apparatus (ortholog); axonemal central pair projection (ortholog); cilium (ortholog) NW_004955484 3567896 3948807 - 102007343 AGCD01058183;AGCD01058184;AGCD01058185;AGCD01058186;AGCD01058187;AGCD01058188;AGCD01058189;AGCD01058190;AGCD01058191;AGCD01058192;AGCD01058193;AGCD01058194;AGCD01058195;AGCD01058196;AGCD01058197;GBCE01141557;XM_013503969;XM_013503970;XM_013503971;XM_013503972 XP_013359423;XP_013359424;XP_013359425;XP_013359426 MODEL 39132989 snrna U6 U6 spliceosomal RNA 9031659 protein-coding Spata7 spermatogenesis associated 7 INVOLVED IN microtubule cytoskeleton organization (ortholog); photoreceptor cell maintenance (ortholog); protein localization to photoreceptor connecting cilium (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN axoneme (ortholog); ciliary basal body (ortholog); microtubule cytoskeleton (ortholog) NW_004955438 11033089 11069178 + 102005509 AGCD01035223;AGCD01035224;GBDF01008623;XM_005390253;XM_005390254;XM_005390255 XP_005390310;XP_005390311;XP_005390312 MODEL 8744526 protein-coding LOC102024967 zinc finger protein 75D-like NW_004955730 1599 12411 - 102024967 AGCD01078218;AGCD01078219;AGCD01078220;AGCD01078221;XM_013510182 XP_013365636 MODEL 8970204 ncrna LOC102009891 uncharacterized LOC102009891 NW_004955444 753602 758219 - 102009891 AGCD01038683;GBDF01111656;XR_001235508 MODEL 8889380 protein-coding Eprs1 glutamyl-prolyl-tRNA synthetase 1 ENCODES a protein that exhibits glutamate-tRNA ligase activity (ortholog); GTPase binding (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); cellular response to type II interferon (ortholog); glutamyl-tRNA aminoacylation (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955520 3550558 3606015 + 102025157 AGCD01068105;AGCD01068106;GBDF01046961;XM_005409277 XP_005409334 MODEL 9001125 pseudo LOC102023620 60S ribosomal protein L23a pseudogene NW_004955507 3512576 3513217 + 102023620 AGCD01065629 MODEL 8898342 pseudo LOC102016966 hydroxyacylglutathione hydrolase, mitochondrial pseudogene NW_004955402 8325331 8325977 - 102016966 AGCD01000193 MODEL 39132991 snrna U6 U6 spliceosomal RNA 8824371 pseudo LOC102024968 rRNA-processing protein UTP23 homolog pseudogene NW_004955904 12171 12940 + 102024968 AGCD01078632;XR_265195 MODEL 9056887 protein-coding Hyi hydroxypyruvate isomerase (putative) ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy 18 (ortholog) NW_004955537 3017860 3020642 - 102027112 AGCD01070940;GBDK01140725;XM_005410655;XM_013507750 XP_005410712;XP_013363204 MODEL 9031869 protein-coding LOC102017848 retinol dehydrogenase 16-like NW_004955458 4717769 4736029 - 102017848 AGCD01047433;AGCD01047434;AGCD01047435;AGCD01047436;GBDJ01117348;XM_005397335;XM_013520789 XP_005397392;XP_013376243 MODEL 8706328 protein-coding Klf9 KLF transcription factor 9 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to cortisol stimulus (ortholog); cellular response to endothelin (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH Body Weight (ortholog); diastolic heart failure (ortholog); endometriosis (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955434 2685416 2716669 + 102029218 AGCD01032105;GBDK01095916;XM_005388555 XP_005388612 MODEL 8977484 protein-coding Vdac3 voltage dependent anion channel 3 ENCODES a protein that exhibits voltage-gated monoatomic ion channel activity (ortholog); INVOLVED IN behavioral fear response (ortholog); chemical synaptic transmission (ortholog); learning (ortholog); ASSOCIATED WITH IMMUNODEFICIENCY 15 (ortholog); immunodeficiency 15B (ortholog); torsion dystonia 6 (ortholog); FOUND IN membrane (ortholog); mitochondrion (ortholog); synaptic vesicle (ortholog) NW_004955536 507393 520399 - 102007367 AGCD01070728;GBCQ01040347;XM_005410506;XM_005410508;XM_013507733 XP_005410563;XP_005410565;XP_013363187 MODEL 9056772 protein-coding LOC102023621 aldo-keto reductase family 1 member C3 homolog NW_004955429 197972 335424 - 102023621 AGCD01028327;AGCD01028328;AGCD01028329;AGCD01028330;AGCD01028331;AGCD01028332;AGCD01028333;AGCD01028334;AGCD01028335;AGCD01028336;AGCD01028337;AGCD01028338;AGCD01028339;AGCD01028340;AGCD01028341;GBDK01017488;XM_005386857;XM_005386858;XM_013515394;XM_013515395 XP_005386914;XP_005386915;XP_013370848;XP_013370849 MODEL 8896758 ncrna LOC102023946 uncharacterized LOC102023946 NW_004955517 2233811 2331769 + 102023946 AGCD01067622;AGCD01067623;GBDI01167785;XR_001231827;XR_001231828;XR_001231829;XR_001231830;XR_264551;XR_264552 MODEL 8717294 ncrna LOC102013421 uncharacterized LOC102013421 NW_004955487 9461547 9465656 - 102013421 AGCD01059459;XR_263994 MODEL 9045862 pseudo LOC102007222 protein SPT2 homolog pseudogene NW_004955474 802672 804690 - 102007222 AGCD01054229 MODEL 8733179 protein-coding LOC102022905 T-cell surface glycoprotein CD1c3-like NW_004955468 10061076 10101044 + 102022905 AGCD01052066;AGCD01052067;GBDK01254259;XM_005400142;XM_013522487 XP_005400199;XP_013377941 MODEL 8782053 protein-coding Ppp1r16a protein phosphatase 1 regulatory subunit 16A ASSOCIATED WITH epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); Recombinant Chromosome 8 Syndrome (ortholog) NW_004955454 3097218 3127896 + 102009458 AGCD01045051;AGCD01045052;AGCD01045053;AGCD01045054;AGCD01045055;AGCD01045056;AGCD01045057;GBCB01035513;XM_005395898;XM_005395899;XM_005395900 XP_005395955;XP_005395956;XP_005395957 MODEL 8737796 ncrna LOC102025931 uncharacterized LOC102025931 NW_004955508 6197605 6201892 - 102025931 AGCD01065917;GBDF01303522;XR_001231647 MODEL 8924479 protein-coding LOC102006112 olfactory receptor 147-like NW_004955412 25143673 25144628 - 102006112 AGCD01013136;XM_005378416 XP_005378473 MODEL 8980375 protein-coding LOC102023622 histone H1oo ENCODES a protein that exhibits nucleosomal DNA binding (ortholog); structural constituent of chromatin (ortholog); INVOLVED IN epigenetic regulation of gene expression (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); immunodeficiency 21 (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN female germ cell nucleus (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955429 17778193 17783307 - 102023622 AGCD01028866;AGCD01028867;GBDJ01408771;XM_005387262 XP_005387319 MODEL 8962863 protein-coding Vdr vitamin D receptor ENCODES a protein that exhibits bile acid nuclear receptor activity (ortholog); calcitriol binding (ortholog); DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); apoptotic process involved in mammary gland involution (ortholog); apoptotic signaling pathway (ortholog); PARTICIPATES IN altered p53 signaling pathway; ASSOCIATED WITH Acute Hepatitis (ortholog); alopecia (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN caveola (ortholog); chromatin (ortholog); cytosol (ortholog) NW_004955500 6745725 6798052 - 102021897 AGCD01063892;GBDJ01220667;XM_005406624;XM_005406625;XM_013505721;XM_013505722 XP_005406681;XP_005406682;XP_013361175;XP_013361176 MODEL 8936920 pseudo LOC102008707 retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta pseudogene NW_004955411 1587497 1587967 + 102008707 AGCD01011485;XM_005377918 MODEL 9000197 protein-coding Spata9 spermatogenesis associated 9 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955418 16862007 16892303 + 102014358 AGCD01019130;AGCD01019131;GBCB01088315;XM_005382236;XM_005382239 XP_005382293;XP_005382296 MODEL 8772269 pseudo LOC102009892 zinc finger CCCH domain-containing protein 15-like NW_004955566 44899 55696 + 102009892 AGCD01074343 MODEL 8948436 protein-coding LOC102023623 olfactory receptor 4C6-like NW_004955511 192846 193784 + 102023623 AGCD01066322;XM_005408181 XP_005408238 MODEL 9049552 pseudo LOC102005779 unconventional myosin-Va pseudogene NW_004955459 2117974 2121858 - 102005779 AGCD01047982 MODEL 8868705 ncrna LOC102008709 uncharacterized LOC102008709 NW_004955412 20482901 20493630 + 102008709 AGCD01013009;GBDF01240677;XR_001232902;XR_001232903;XR_260004 MODEL 8748193 pseudo LOC102007552 60S ribosomal protein L17 pseudogene NW_004955419 5413575 5414083 - 102007552 AGCD01019806 MODEL 8841814 protein-coding Eps15 epidermal growth factor receptor pathway substrate 15 ENCODES a protein that exhibits identical protein binding (ortholog); polyubiquitin modification-dependent protein binding (ortholog); ubiquitin binding (ortholog); INVOLVED IN clathrin coat assembly (ortholog); endocytic recycling (ortholog); Golgi to endosome transport (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; Notch signaling pathway; FOUND IN aggresome (ortholog); AP-2 adaptor complex (ortholog); apical plasma membrane (ortholog) NW_004955464 7569570 7688098 + 102025773 AGCD01050065;AGCD01050066;AGCD01050067;GBCB01020993;XM_005398604;XM_013521700;XM_013521701;XM_013521702 XP_005398661;XP_013377154;XP_013377155;XP_013377156 MODEL 8751893 protein-coding LOC102019440 olfactory receptor 4L1-like NW_004955550 183997 184935 + 102019440 AGCD01072485;XM_005412127 XP_005412184 MODEL 9028520 protein-coding Kxd1 KxDL motif containing 1 INVOLVED IN lysosome localization (ortholog); vesicle-mediated transport (ortholog); ASSOCIATED WITH Hermansky-Pudlak syndrome (ortholog); Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); FOUND IN BLOC-1 complex (ortholog); BORC complex (ortholog) NW_004955524 3010997 3018309 - 102026252 AGCD01068849;AGCD01068850;GBBH01091261;XM_005409585;XM_005409586;XM_013507288 XP_005409642;XP_005409643;XP_013362742 MODEL 8969669 protein-coding LOC102020366 uncharacterized LOC102020366 NW_004955431 22145724 22192946 - 102020366 AGCD01030511;GBCE01160470;XM_013515756 XP_013371210 MODEL 8785691 protein-coding Hykk hydroxylysine kinase ENCODES a protein that exhibits hydroxylysine kinase activity (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); chronic obstructive pulmonary disease (ortholog); colorectal cancer (ortholog) NW_004955450 900783 918873 + 102010433 AGCD01042345;GBDI01280889;XM_005393449;XM_005393450;XM_013518985 XP_005393506;XP_005393507;XP_013374439 MODEL 9016932 pseudo LOC102026975 60S acidic ribosomal protein P1 pseudogene NW_004955481 4920266 4957286 - 102026975 AGCD01056954;AGCD01056955;AGCD01056956;AGCD01056957 MODEL 8725848 protein-coding Klhdc1 kelch domain containing 1 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN ubiquitin-dependent protein catabolic process via the C-end degron rule pathway (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955409 12914446 12970266 - 102027820 AGCD01009577;AGCD01009578;AGCD01009579;AGCD01009580;AGCD01009581;AGCD01009582;GBDK01058373;XM_005376833;XM_005376834;XM_005376835 XP_005376890;XP_005376891;XP_005376892 MODEL 8720060 protein-coding LOC102015215 olfactory receptor 7C2 NW_004955495 8328332 8329291 - 102015215 AGCD01062198;XM_005406105 XP_005406162 MODEL 9000372 pseudo LOC102021218 glycerophosphodiester phosphodiesterase 1 pseudogene NW_004955463 13811148 13812387 + 102021218 AGCD01049888 MODEL 9053584 protein-coding Upf2 UPF2 regulator of nonsense mediated mRNA decay ENCODES a protein that exhibits telomeric DNA binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); liver development (ortholog); nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); cytosol (ortholog) NW_004955421 27867663 27962809 - 102019400 AGCD01022297;AGCD01022298;AGCD01022299;GBDF01080624;XM_013513652;XM_013513653 XP_013369106;XP_013369107 MODEL 39132361 snrna U6 U6 spliceosomal RNA 9067337 protein-coding LOC102006113 beta-galactosidase-1-like protein 3 NW_004955412 35224061 35251279 + 102006113 AGCD01013407;GBDF01102556;XM_013510984 XP_013366438 MODEL 8952517 protein-coding Hyls1 HYLS1 centriolar and ciliogenesis associated ASSOCIATED WITH anencephaly (ortholog); chromosome 11 partial duplication syndrome (ortholog); congenital heart disease (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955412 26937460 26949571 + 102025103 AGCD01013224;GBDF01043493;XM_005378474;XM_005378475;XM_005378476;XM_005378477;XM_005378478;XM_005378479;XM_013511232 XP_005378531;XP_005378532;XP_005378533;XP_005378534;XP_005378535;XP_005378536;XP_013366686 MODEL 8851946 protein-coding LOC102016968 ETS translocation variant 5-like NW_004955663 39077 43745 + 102016968 AGCD01077900;GBDJ01272728;XM_013510177 XP_013365631 MODEL 39133697 snrna U4 U4 spliceosomal RNA 9039500 protein-coding Ppp1r16b protein phosphatase 1 regulatory subunit 16B ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); INVOLVED IN establishment of endothelial barrier (ortholog); positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis (ortholog); positive regulation of endothelial cell proliferation (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); FOUND IN cell projection (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955445 17864103 17961295 - 102008675 AGCD01039897;GBDI01295625;XM_005392527;XM_005392529 XP_005392584;XP_005392586 MODEL 39133722 mirna MIR361 microRNA 361 9004778 protein-coding Vegfa vascular endothelial growth factor A ENCODES a protein that exhibits chemoattractant activity (ortholog); cytokine activity (ortholog); fibronectin binding (ortholog); INVOLVED IN angiogenesis (ortholog); angiogenesis involved in coronary vascular morphogenesis (ortholog); apoptotic process (ortholog); PARTICIPATES IN altered vascular endothelial growth factor signaling pathway involving proteins affecting its expression; altered vascular endothelial growth factor signaling pathway involving the main players; bevacizumab pharmacodynamics pathway; ASSOCIATED WITH acoustic neuroma (ortholog); acute chest syndrome (ortholog); acute kidney failure (ortholog); FOUND IN adherens junction (ortholog); basement membrane (ortholog); cell surface (ortholog) NW_004955437 9527445 9541908 + 102013969 AGCD01034536;AGCD01034537;GBBH01034471;GBCQ01000703;XM_013516949 XP_013372403 MODEL 39132362 snrna U6 U6 spliceosomal RNA 8804781 ncrna LOC102003276 uncharacterized LOC102003276 NW_004955528 1806550 1808282 + 102003276 AGCD01069571;AGCD01069572;XR_001231991 MODEL 39133699 snrna U4 U4 spliceosomal RNA 9040054 pseudo LOC102022532 olfactory receptor 24-like NW_004955524 1445223 1447462 - 102022532 AGCD01068750 MODEL 8787852 ncrna LOC102013431 uncharacterized LOC102013431 NW_004955504 2733042 2738476 - 102013431 AGCD01064859;AGCD01064860;GBDF01281745;XR_264289 MODEL 8949560 protein-coding Ky kyphoscoliosis peptidase INVOLVED IN muscle organ development (ortholog); neuromuscular junction development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); hereditary spastic paraplegia (ortholog); FOUND IN Z disc (ortholog) NW_004955501 3961603 4005095 + 102021027 AGCD01064106;GBCB01020151;XM_005406786;XM_013505809 XP_005406843;XP_013361263 MODEL 8730301 protein-coding Znf346 zinc finger protein 346 ENCODES a protein that exhibits double-stranded RNA binding (ortholog); enzyme binding (ortholog); miRNA binding (ortholog); INVOLVED IN positive regulation of apoptotic process (ortholog); ASSOCIATED WITH Chromosome 5, Trisomy 5q (ortholog); Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955408 29312273 29346983 + 102019033 AGCD01008751;GBCE01033091;GBCQ01151211;XM_005376407;XM_005376408;XM_005376409;XM_013509701 XP_005376464;XP_005376465;XP_005376466;XP_013365155 MODEL 39133605 snrna U4 U4 spliceosomal RNA 8703493 protein-coding Eps15l1 epidermal growth factor receptor pathway substrate 15 like 1 INVOLVED IN synaptic vesicle endocytosis (ortholog); FOUND IN clathrin coat of coated pit (ortholog); presynapse (ortholog) NW_004955524 1264035 1309394 + 102029784 AGCD01068741;AGCD01068742;GBCE01030448;XM_013507228;XM_013507229;XM_013507230;XM_013507231 XP_013362682;XP_013362683;XP_013362684;XP_013362685 MODEL 9043643 protein-coding Lnx2 ligand of numb-protein X 2 ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN neural precursor cell proliferation (ortholog); neuron differentiation (ortholog); FOUND IN plasma membrane (ortholog) NW_004955497 6948329 6989455 - 102003984 AGCD01062651;GBCC01024593;XM_005406356 XP_005406413 MODEL 8761896 pseudo LOC102026977 synaptonemal complex protein 2-like NW_004955418 13668742 13704081 + 102026977 AGCD01019053;AGCD01019054;AGCD01019055 MODEL 10340086 ncrna LOC106146882 uncharacterized LOC106146882 NW_004955500 6839113 6847309 + 106146882 AGCD01063892;XR_001231499 MODEL 8708520 protein-coding Slain1 SLAIN motif family member 1 ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); neuronal ceroid lipofuscinosis (ortholog) NW_004955404 29537497 29594617 - 102015594 AGCD01003978;AGCD01003979;GBBH01069566;GBDF01054223;XM_005374150;XM_005374151 XP_005374207;XP_005374208 MODEL 39132992 snrna U6 U6 spliceosomal RNA 8958241 pseudo LOC102021221 F-actin-capping protein subunit beta pseudogene NW_004955465 6283370 6300243 + 102021221 AGCD01050439;AGCD01050440 MODEL 8753210 protein-coding Upf3a UPF3A regulator of nonsense mediated mRNA decay ENCODES a protein that exhibits mRNA binding (ortholog); telomeric DNA binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); ASSOCIATED WITH factor X deficiency (ortholog); FOUND IN exon-exon junction complex (ortholog); intracellular membrane-bounded organelle (ortholog); neuron projection (ortholog) NW_004955404 25556 36730 - 102025753 AGCD01003193;GBDJ01132458;GBDK01146216;XM_005415382 XP_005415439 MODEL 9009351 protein-coding LOC102002971 butyrophilin subfamily 1 member A1-like NW_004955581 1320018 1344045 + 102002971 AGCD01075730;GBBH01227542;XM_013509756;XM_013509757;XM_013509758;XM_013509759;XM_013509760;XM_013509761;XM_013509762;XR_001232489 XP_013365210;XP_013365211;XP_013365212;XP_013365213;XP_013365214;XP_013365215;XP_013365216 MODEL 10384267 ncrna LOC106149988 uncharacterized LOC106149988 NW_004955459 8729835 8753453 + 106149988 AGCD01048145;GBDJ01118067;XR_001236496 MODEL 39132995 snrna U6 U6 spliceosomal RNA 8917387 pseudo LOC102005781 putative 40S ribosomal protein S26-like 1 NW_004955462 251999 253115 + 102005781 AGCD01049074 MODEL 8771908 protein-coding Sgtb small glutamine rich tetratricopeptide repeat co-chaperone beta ENCODES a protein that exhibits Hsp70 protein binding (ortholog); identical protein binding (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN protein heterooligomerization (ortholog); protein homooligomerization (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955446 3374363 3426284 + 102018871 AGCD01040011;AGCD01040012;AGCD01040013;AGCD01040014;AGCD01040015;GBDF01157752;XM_005392623;XM_005392624 XP_005392680;XP_005392681 MODEL 8798815 ncrna LOC102021224 uncharacterized LOC102021224 NW_004955412 26549172 26550474 - 102021224 AGCD01013194;GBDF01009694;XR_260026 MODEL 8838886 protein-coding LOC102007223 cystatin-C-like NW_004955415 30634590 30646109 + 102007223 AGCD01016666;GBDI01294913;XM_005380976;XM_013512135 XP_005381033;XP_013367589 MODEL 8765418 pseudo LOC102002972 uncharacterized LOC102002972 NW_004955449 17868296 17939598 - 102002972 AGCD01042269;AGCD01042270;AGCD01042271;AGCD01042272;AGCD01042273;AGCD01042274;AGCD01042275 MODEL 8725170 protein-coding Tesk2 testis associated actin remodelling kinase 2 ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); focal adhesion assembly (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955464 12789493 12924077 + 102003634 AGCD01050228;AGCD01050229;AGCD01050230;AGCD01050231;AGCD01050232;AGCD01050233;AGCD01050234;AGCD01050235;AGCD01050236;AGCD01050237;AGCD01050238;AGCD01050239;AGCD01050240;GBCQ01123838;GBDF01044666;XM_005398714 XP_005398771 MODEL 9038563 protein-coding LOC102020372 uncharacterized LOC102020372 NW_004955527 2368171 2373713 + 102020372 AGCD01069433;GBDF01182599;XM_005409896 XP_005409953 MODEL 8946745 protein-coding LOC102025933 olfactory receptor 4C15-like NW_004955511 440386 441357 - 102025933 AGCD01066331;XM_005407944 XP_005408001 MODEL 8770373 protein-coding LOC102013433 ras-related protein Rab-7a-like NW_004955429 13690345 13691311 - 102013433 AGCD01028762;GBDI01000890;XM_013515500 XP_013370954 MODEL 10364055 ncrna LOC106149142 uncharacterized LOC106149142 NW_004955438 7160937 7197948 + 106149142 AGCD01035125;AGCD01035126;AGCD01035127;GBCE01091825;XR_001235119 MODEL 8829236 protein-coding LOC102024969 keratin-associated protein 4-3-like NW_004955451 15532804 15562822 - 102024969 AGCD01043615;AGCD01043616;AGCD01043617;AGCD01043618;XM_013519180 XP_013374634 MODEL 9059663 protein-coding Wwox WW domain containing oxidoreductase ENCODES a protein that exhibits enzyme binding (ortholog); identical protein binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN cellular response to transforming growth factor beta stimulus (ortholog); extrinsic apoptotic signaling pathway (ortholog); intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); autism spectrum disorder (ortholog); autosomal recessive spinocerebellar ataxia 12 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955522 1265732 2185372 + 102026035 AGCD01068359;AGCD01068360;AGCD01068361;AGCD01068362;AGCD01068363;AGCD01068364;AGCD01068365;GBDF01158326;GBDF01158329;XM_013507098 XP_013362552 MODEL 8828056 protein-coding Kyat1 kynurenine aminotransferase 1 ENCODES a protein that exhibits cysteine-S-conjugate beta-lyase activity (ortholog); glutamine-phenylpyruvate transaminase activity (ortholog); kynurenine-oxoglutarate transaminase activity (ortholog); INVOLVED IN kynurenine metabolic process (ortholog); L-kynurenine catabolic process (ortholog); pyruvate catabolic process (ortholog); PARTICIPATES IN kynurenine metabolic pathway; ASSOCIATED WITH carcinoma (ortholog); developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955570 1211950 1260561 - 102010002 AGCD01074799;AGCD01074800;AGCD01074801;AGCD01074802;AGCD01074803;AGCD01074804;AGCD01074805;AGCD01074806;GBDF01082429;XM_005413589;XM_005413590;XM_013509435;XM_013509436 XP_005413646;XP_005413647;XP_013364889;XP_013364890 MODEL 8833527 protein-coding Eps8 EGFR pathway substrate 8, signaling adaptor ENCODES a protein that exhibits actin binding (ortholog); small GTPase binding (ortholog); INVOLVED IN actin crosslink formation (ortholog); actin cytoskeleton organization (ortholog); actin filament bundle assembly (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 102 (ortholog); FOUND IN brush border (ortholog); cell cortex (ortholog); glutamatergic synapse (ortholog) NW_004955413 12267701 12386088 - 102005356 AGCD01013986;AGCD01013987;AGCD01013988;GBDI01290198;XM_005379018;XM_005379019;XM_005379020 XP_005379075;XP_005379076;XP_005379077 MODEL 8836021 protein-coding LOC102006115 C-type lectin domain family 7 member A-like NW_004955413 7254513 7276098 - 102006115 AGCD01013806;AGCD01013807;AGCD01013808;GBBH01168364;XM_005378930 XP_005378987 MODEL 8901116 ncrna LOC102028685 uncharacterized LOC102028685 NW_004955441 18244127 18254229 - 102028685 AGCD01037312;GBDI01285291;XR_262092 MODEL 9061898 protein-coding LOC102025934 olfactory receptor 9Q1-like NW_004955511 2971725 2972660 + 102025934 AGCD01066437;XM_005408022 XP_005408079 MODEL 8726389 pseudo LOC102023948 histone acetyltransferase KAT2B pseudogene NW_004955525 2539956 2542715 + 102023948 AGCD01069098 MODEL 8870289 ncrna LOC102007553 uncharacterized LOC102007553 NW_004955483 2038491 2047890 - 102007553 AGCD01057666;GBCQ01014966;XR_263863 MODEL 39132363 snrna U6 U6 spliceosomal RNA 8720369 ncrna LOC102003284 uncharacterized LOC102003284 NW_004955438 10342037 10345901 + 102003284 AGCD01035203;GBDF01305498;XR_261924 MODEL 9045173 protein-coding Bgn biglycan ENCODES a protein that exhibits cytokine binding (ortholog); extracellular matrix binding (ortholog); glycosaminoglycan binding (ortholog); INVOLVED IN articular cartilage development (ortholog); blood vessel remodeling (ortholog); bone development (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); aortic disease (ortholog); autistic disorder (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog); sarcolemma (ortholog) NW_004955580 252183 263179 + 102010847 AGCD01075593;GBCE01004164;XM_005414120;XM_005414121 XP_005414177;XP_005414178 MODEL 9002468 protein-coding Vegfb vascular endothelial growth factor B ENCODES a protein that exhibits chemoattractant activity (ortholog); identical protein binding (ortholog); vascular endothelial growth factor receptor 1 binding (ortholog); INVOLVED IN angiogenesis (ortholog); cardiac muscle contraction (ortholog); coronary vasculature development (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Brain Injuries (ortholog); Breast Neoplasms (ortholog); Choroidal Neovascularization (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog) NW_004955422 20840055 20843182 - 102019183 AGCD01023092;GBCB01024596;XM_005384633;XM_005384634;XM_013513962 XP_005384690;XP_005384691;XP_013369416 MODEL 9010709 protein-coding LOC102025936 olfactory receptor 4C11-like NW_004955511 245457 275350 + 102025936 AGCD01066325;AGCD01066326;GBCE01094201;XM_013506351 XP_013361805 MODEL 9020602 ncrna LOC102005782 uncharacterized LOC102005782 NW_004955410 28867225 28871620 + 102005782 AGCD01011262;AGCD01011263;GBDJ01369351;XR_259877 MODEL 8884691 protein-coding Gpr173 G protein-coupled receptor 173 ENCODES a protein that exhibits gonadotropin-releasing hormone receptor activity (ortholog); INVOLVED IN negative regulation of neuron migration (ortholog); ASSOCIATED WITH autistic disorder (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog) NW_004955475 137239 158670 + 102010153 AGCD01054679;AGCD01054680;GBCE01167236;XM_005401475;XM_013502799 XP_005401532;XP_013358253 MODEL 8927919 protein-coding Eps8l1 EPS8 signaling adaptor L1 ENCODES a protein that exhibits actin binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); T cell receptor binding (ortholog); INVOLVED IN positive regulation of ruffle assembly (ortholog); regulation of Rho protein signal transduction (ortholog); Rho protein signal transduction (ortholog); FOUND IN cytosol (ortholog); protein-containing complex (ortholog); ruffle membrane (ortholog) NW_004955567 1074714 1084259 - 102006837 AGCD01074458;AGCD01074459;GBCE01000821;XM_013509255;XM_013509256;XM_013509257;XM_013509258 XP_013364709;XP_013364710;XP_013364711;XP_013364712 MODEL 39132365 snrna U6 U6 spliceosomal RNA 39133606 snrna U4 U4 spliceosomal RNA 8882687 protein-coding Lonrf1 LON peptidase N-terminal domain and ring finger 1 NW_004955463 4282609 4318716 + 102005236 AGCD01049603;AGCD01049604;GBBH01110840;XM_005398466 XP_005398523 MODEL 9002159 pseudo LOC102005784 SH2B adapter protein 1 pseudogene NW_004955464 13239686 13248332 - 102005784 AGCD01050265;XM_005398719 MODEL 39131502 protein-coding VEGFC vascular endothelial growth factor C 8747799 protein-coding Spatc1 spermatogenesis and centriole associated 1 ENCODES a protein that exhibits gamma-tubulin binding (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog) NW_004955454 2675857 2703729 + 102020200 AGCD01045028;AGCD01045029;GBDF01001260;XM_005395837 XP_005395894 MODEL 8968218 ncrna LOC102012211 uncharacterized LOC102012211 NW_004955422 23635752 23644682 - 102012211 AGCD01023199;GBCQ01013438;XR_260906 MODEL 8837113 pseudo LOC102023630 WD repeat and FYVE domain-containing protein 1 pseudogene NW_004955525 1777379 1778621 + 102023630 AGCD01069059 MODEL 8826056 protein-coding LOC102017852 mast cell protease 4-like NW_004955409 35817333 35819685 + 102017852 AGCD01010433;XM_005377176 XP_005377233 MODEL 39133607 snrna U4 U4 spliceosomal RNA 8786449 protein-coding Vegfc vascular endothelial growth factor C ENCODES a protein that exhibits chemoattractant activity (ortholog); vascular endothelial growth factor receptor 3 binding (ortholog); INVOLVED IN angiogenesis (ortholog); animal organ morphogenesis (ortholog); cell population proliferation (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH angiosarcoma (ortholog); atherosclerosis (ortholog); breast carcinoma (ortholog); FOUND IN extracellular space (ortholog) NW_004955403 31016423 31130892 + 102015589 AGCD01002410;AGCD01002411;GBDI01135045;XM_005373514 XP_005373571 MODEL 8793798 protein-coding Wwp1 WW domain containing E3 ubiquitin protein ligase 1 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); protein ubiquitination (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Wolff-Parkinson-White syndrome (ortholog) NW_004955417 4011302 4064584 + 102006455 AGCD01017935;AGCD01017936;AGCD01017937;GBCC01046163;XM_013512748;XM_013512749;XM_013512750 XP_013368202;XP_013368203;XP_013368204 MODEL 8922566 protein-coding Kyat3 kynurenine aminotransferase 3 ENCODES a protein that exhibits kynurenine-glyoxylate transaminase activity (ortholog); kynurenine-oxoglutarate transaminase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN 2-oxoglutarate metabolic process (ortholog); amino acid metabolic process (ortholog); kynurenine metabolic process (ortholog); PARTICIPATES IN kynurenine metabolic pathway; FOUND IN mitochondrion (ortholog) NW_004955423 5340863 5388460 + 102014918 AGCD01023560;GBCQ01007721;XM_005385107;XM_005385108;XM_005385109;XM_005385110;XM_005385111;XM_005385112 XP_005385164;XP_005385165;XP_005385166;XP_005385167;XP_005385168;XP_005385169 MODEL 9061083 pseudo LOC102022533 mitogen-activated protein kinase 1-like NW_004955524 298974 300265 + 102022533 AGCD01068675 MODEL 8846785 protein-coding LOC102028686 nodal modulator 1 NW_004955442 926673 979718 + 102028686 AGCD01037430;GBBH01092707;XM_005391083;XM_013517953 XP_005391140;XP_013373407 MODEL 8947481 protein-coding Tmprss3 transmembrane serine protease 3 ENCODES a protein that exhibits sodium channel regulator activity (ortholog); INVOLVED IN intracellular sodium ion homeostasis (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 8 (ortholog); cataract 9 multiple types (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); neuronal cell body (ortholog) NW_004955407 39332517 39351699 + 102013384 AGCD01007824;GBCQ01057658;XM_005375826;XM_005375828;XM_013505144;XM_013505147 XP_005375883;XP_005375885;XP_013360598;XP_013360601 MODEL 8928642 protein-coding Klhdc10 kelch domain containing 10 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN rescue of stalled ribosome (ortholog); ubiquitin-dependent protein catabolic process via the C-end degron rule pathway (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN Cul2-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955479 10743658 10826129 + 102012195 AGCD01056560;AGCD01056561;AGCD01056562;GBDF01004541;XM_005402420;XM_005402421;XM_013503269 XP_005402477;XP_005402478;XP_013358723 MODEL 8941324 protein-coding Bhlha15 basic helix-loop-helix family member a15 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); cell differentiation (ortholog); cell-cell adhesion mediated by cadherin (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleus (ortholog) NW_004955460 14103053 14106714 + 102028274 AGCD01048738;GBDF01053345;XM_005397913;XR_263065 XP_005397970 MODEL 8980154 protein-coding Vegfd vascular endothelial growth factor D ENCODES a protein that exhibits chemoattractant activity (ortholog); growth factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN dopaminergic neuron differentiation (ortholog); fibroblast proliferation (ortholog); induction of positive chemotaxis (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Fanconi anemia (ortholog); lymphangioleiomyomatosis (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog) NW_004955519 2813475 2845856 + 102017049 AGCD01067942;GBDK01091601;XM_005409169 XP_005409226 MODEL 10132143 ncrna LOC106146883 uncharacterized LOC106146883 NW_004955500 6863478 6864659 + 106146883 AGCD01063893;GBDF01169170;XR_001231500 MODEL 8712436 ncrna LOC102026978 uncharacterized LOC102026978 NW_004955484 3031441 3043406 + 102026978 AGCD01058149;AGCD01058150;GBDK01273591;XR_263879 MODEL 9035655 pseudo LOC102022536 melanoma-associated antigen B10-like NW_004955531 3135227 3136118 - 102022536 AGCD01070062 MODEL 8765388 protein-coding Tesmin testis expressed metallothionein like protein INVOLVED IN male meiotic nuclear division (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); immunodeficiency 90 (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); male germ cell nucleus (ortholog); nucleus (ortholog) NW_004955422 17161396 17199649 + 102029756 AGCD01022913;AGCD01022914;GBDF01005749;XM_005384266;XM_005384267 XP_005384323;XP_005384324 MODEL 8940064 pseudo LOC102005785 pleckstrin homology domain-containing family B member 2 pseudogene NW_004955411 11025058 11025724 + 102005785 AGCD01011800 MODEL 9065638 protein-coding LOC102008710 olfactory receptor 8B4-like NW_004955412 25399638 25400570 - 102008710 AGCD01013151;XM_005378422 XP_005378479 MODEL 9044007 protein-coding Spatc1l spermatogenesis and centriole associated 1 like ENCODES a protein that exhibits identical protein binding (ortholog); protein kinase A regulatory subunit binding (ortholog); INVOLVED IN actin polymerization or depolymerization (ortholog); positive regulation of cAMP-dependent protein kinase activity (ortholog); positive regulation of cAMP/PKA signal transduction (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); cataract 9 multiple types (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); sperm head-tail coupling apparatus (ortholog) NW_004955407 42621167 42629350 - 102017632 AGCD01007894;GBDF01009206;XM_005375929 XP_005375986 MODEL 9064849 ncrna LOC102022906 uncharacterized LOC102022906 NW_004955413 29120096 29125411 + 102022906 AGCD01014576;GBDJ01413290;XR_001233034;XR_260123 MODEL 8982864 pseudo LOC102006116 28S ribosomal protein S36, mitochondrial pseudogene NW_004955413 12416468 12416769 - 102006116 AGCD01013988 MODEL 8896745 ncrna LOC102023631 uncharacterized LOC102023631 NW_004955437 3113379 3136035 + 102023631 AGCD01034297;AGCD01034298;GBDF01124453;XR_001235051;XR_001235052;XR_261840 MODEL 8731627 pseudo LOC102017856 40S ribosomal protein SA pseudogene NW_004955412 30610458 30611355 - 102017856 AGCD01013303 MODEL 8894546 pseudo LOC102007224 selenide, water dikinase 2-like NW_004955417 15154063 15155323 + 102007224 AGCD01018224 MODEL 8713018 ncrna LOC102024562 uncharacterized LOC102024562 NW_004955416 31688788 31730228 + 102024562 AGCD01017769;GBDF01307972;XR_001233366;XR_001233367;XR_001233368;XR_260450 MODEL 8935973 protein-coding LOC102020373 interleukin-1 receptor accessory protein-like 1 NW_004955531 1088287 1356479 - 102020373 AGCD01070020;AGCD01070021;AGCD01070022;AGCD01070023;AGCD01070024;AGCD01070025;AGCD01070026;AGCD01070027;AGCD01070028;AGCD01070029;XM_013507557 XP_013363011 MODEL 8749048 protein-coding Sh2b1 SH2B adaptor protein 1 INVOLVED IN cell motility (ortholog); lamellipodium assembly (ortholog); positive regulation of mitotic nuclear division (ortholog); PARTICIPATES IN leptin system pathway; ASSOCIATED WITH Brody myopathy (ortholog); chromosome 16p11.2 deletion syndrome, 220-kb (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog) NW_004955493 6583415 6592690 - 102014577 AGCD01061119;GBBH01065760;XM_005405163;XM_013504844;XM_013504845;XM_013504846;XM_013504847;XM_013504848;XM_013504849 XP_005405220;XP_013360298;XP_013360299;XP_013360300;XP_013360301;XP_013360302;XP_013360303 MODEL 8932115 protein-coding LOC102028688 olfactory receptor 15 ENCODES a protein that exhibits odorant binding (ortholog); olfactory receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception (ortholog); detection of chemical stimulus involved in sensory perception of smell (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); Rubinstein-Taybi syndrome (ortholog); FOUND IN cell cortex (ortholog); membrane (ortholog) NW_004955442 14000372 14005737 - 102028688 AGCD01037800;XM_005391355;XM_013517701;XM_013517702 XP_005391412;XP_013373155;XP_013373156 MODEL 8969719 protein-coding Gpr174 G protein-coupled receptor 174 ENCODES a protein that exhibits bioactive lipid receptor activity (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN negative regulation of interleukin-2 production (ortholog); T cell homeostasis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN centriolar satellite (ortholog); intracellular membrane-bounded organelle (ortholog); plasma membrane (ortholog) NW_004955557 2071792 2102865 + 102024289 AGCD01073322;GBDK01300605;XM_005412641;XM_005412642;XM_005412643 XP_005412698;XP_005412699;XP_005412700 MODEL 8907336 protein-coding Wwp2 WW domain containing E3 ubiquitin protein ligase 2 ENCODES a protein that exhibits potassium channel inhibitor activity (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN extracellular transport (ortholog); negative regulation of DNA-binding transcription factor activity (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); Knee Osteoarthritis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955484 6853820 6967261 - 102021879 AGCD01058297;AGCD01058298;AGCD01058299;AGCD01058300;GBCB01059211;XM_013503940;XM_013503941 XP_013359394;XP_013359395 MODEL 8934243 protein-coding LOC102019442 zinc transporter 1-like NW_004955442 19617356 19619919 - 102019442 AGCD01038070;AGCD01038071;GBDF01252767;XM_013518023 XP_013373477 MODEL 9052404 protein-coding Klhdc2 kelch domain containing 2 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ubiquitin-dependent protein catabolic process via the C-end degron rule pathway (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); Intellectual Developmental Disorder with Speech Delay and Axonal Peripheral Neuropathy (ortholog); FOUND IN Cul2-RING ubiquitin ligase complex (ortholog); nuclear body (ortholog); nuclear membrane (ortholog) NW_004955409 12901892 12910562 - 102028618 AGCD01009576;GBDF01053830;GBDK01183936;XM_005376836 XP_005376893 MODEL 8953301 protein-coding Neil1 nei like DNA glycosylase 1 ENCODES a protein that exhibits DNA N-glycosylase activity (ortholog); hydrolase activity, acting on glycosyl bonds (ortholog); lyase activity (ortholog); INVOLVED IN base-excision repair (ortholog); DNA repair (ortholog); negative regulation of nuclease activity (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); Bloom syndrome (ortholog); chromosome 15q24 deletion syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955450 2883344 2889593 - 102029574 AGCD01042410;GBCE01009131;XM_005393515;XM_005393516;XM_005393517;XM_005393518;XM_005393519 XP_005393572;XP_005393573;XP_005393574;XP_005393575;XP_005393576 MODEL 8786836 ncrna LOC102028695 uncharacterized LOC102028695 NW_004955568 20971 29068 - 102028695 AGCD01074499;GBDF01089433;XR_265037 MODEL 10117636 ncrna LOC106146884 uncharacterized LOC106146884 NW_004955500 8037695 8047084 - 106146884 AGCD01063972;AGCD01063973;GBCE01016012;XR_001231501;XR_001231502;XR_001231503 MODEL 8797716 protein-coding Lonrf3 LON peptidase N-terminal domain and ring finger 3 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955534 979399 1016626 - 102014605 AGCD01070483;GBBH01086248;XM_005410453;XM_005410454;XM_005410455 XP_005410510;XP_005410511;XP_005410512 MODEL 8720706 ncrna LOC102023949 uncharacterized LOC102023949 NW_004955435 18533431 18550571 + 102023949 AGCD01033406;GBDJ01257305;XR_261721 MODEL 8990532 protein-coding LOC102026979 cytochrome b5 type B ENCODES a protein that exhibits enzyme activator activity (ortholog); heme binding (ortholog); nitrite reductase (NO-forming) activity (ortholog); INVOLVED IN nitric oxide biosynthetic process (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN mitochondrial outer membrane (ortholog); nitric-oxide synthase complex (ortholog) NW_004955484 7239364 7270639 - 102026979 AGCD01058320;AGCD01058321;GBCE01098868;XM_005403554 XP_005403611 MODEL 10296320 ncrna LOC106149989 uncharacterized LOC106149989 NW_004955460 8061251 8065462 - 106149989 AGCD01048512;GBCB01056225;XR_001236500;XR_001236501 MODEL 9021951 protein-coding Tespa1 thymocyte expressed, positive selection associated 1 ENCODES a protein that exhibits phospholipase binding (ortholog); INVOLVED IN COP9 signalosome assembly (ortholog); positive regulation of T cell differentiation in thymus (ortholog); positive regulation of T cell receptor signaling pathway (ortholog); FOUND IN COP9 signalosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955458 2084931 2108328 - 102010450 AGCD01047214;GBDK01266984;XM_013521032 XP_013376486 MODEL 8972222 pseudo LOC102007555 eukaryotic translation initiation factor 2A-like NW_004955484 7623437 7625083 + 102007555 AGCD01058340 MODEL 8887956 ncrna LOC102008711 uncharacterized LOC102008711 NW_004955467 9917224 9927059 + 102008711 AGCD01051535;GBDF01226367;XR_001236854;XR_001236855 MODEL 8939295 pseudo LOC102003287 60S ribosomal protein L23a pseudogene NW_004955442 14142494 14143509 + 102003287 AGCD01037802 MODEL 39131494 protein-coding ZNF354C zinc finger protein 354C 8952132 pseudo LOC102009895 DNA damage-regulated autophagy modulator protein 2 pseudogene NW_004955446 16745148 16746679 - 102009895 AGCD01040349 MODEL 8932545 pseudo LOC102023635 actin, cytoplasmic 1-like NW_004955543 956118 957366 + 102023635 AGCD01071608 MODEL 9000469 pseudo LOC102023952 calcyclin-binding protein pseudogene NW_004955438 4183920 4184638 - 102023952 AGCD01035038 MODEL 9028170 protein-coding Eps8l2 EPS8 signaling adaptor L2 ENCODES a protein that exhibits actin binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN positive regulation of ruffle assembly (ortholog); regulation of Rho protein signal transduction (ortholog); Rho protein signal transduction (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 106 (ortholog); Beckwith-Wiedemann syndrome (ortholog); Chanarin-Dorfman syndrome (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); protein-containing complex (ortholog) NW_004955476 11371928 11390588 - 102012192 AGCD01055454;AGCD01055455;AGCD01055456;GBBH01063738;GBDI01006668;XM_005401820 XP_005401877 MODEL 8909713 protein-coding LOC102013434 uncharacterized LOC102013434 NW_004955430 2174725 2183009 + 102013434 AGCD01029156;GBDK01214826;XM_005387309 XP_005387366 MODEL 8903191 protein-coding LOC102023639 olfactory receptor 11H6-like NW_004955550 690292 691122 + 102023639 AGCD01072515;XM_013508547 XP_013364001 MODEL 8704138 pseudo LOC102023954 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 pseudogene NW_004955543 959137 960309 + 102023954 AGCD01071608 MODEL 8965219 protein-coding Bhlha9 basic helix-loop-helix family member a9 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); ASSOCIATED WITH Bifid Femur with Monodactylous Ectrodactyly (ortholog); chromosome 17p13.3 duplication syndrome (ortholog); Complex Camptosynpolydactyly (ortholog); FOUND IN cytoplasm (ortholog) NW_004955481 2769023 2770269 + 102007769 AGCD01056883;AGCD01056884;XM_005402922 XP_005402979 MODEL 8881952 protein-coding LOC102009896 transmembrane protease serine 11F NW_004955447 4757521 4834971 + 102009896 AGCD01040733;GBDF01305457;XM_005392827 XP_005392884 MODEL 8859902 protein-coding Ventx VENT homeobox ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); histone acetyltransferase binding (ortholog); histone acetyltransferase regulator activity (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); esophagus squamous cell carcinoma (ortholog); FOUND IN nucleus (ortholog) NW_004955477 10945539 10948735 - 102003339 AGCD01055711;XM_005402059 XP_005402116 MODEL 8955948 protein-coding LOC102019444 splicing factor, arginine/serine-rich 19 NW_004955559 1235878 1243218 - 102019444 AGCD01073638;GBBH01142756;GBDF01090351;XM_013508983 XP_013364437 MODEL 8864422 protein-coding Safb scaffold attachment factor B ENCODES a protein that exhibits chromatin binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN estrogen receptor signaling pathway (ortholog); hormone metabolic process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN midbody (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955495 3743673 3775073 - 102026440 AGCD01061879;GBDK01009759;XM_005405765;XM_005405766 XP_005405822;XP_005405823 MODEL 9027939 protein-coding LOC102023640 beta-microseminoprotein-like NW_004955556 255059 262466 + 102023640 AGCD01073169;GBDF01116602;XM_005412549 XP_005412606 MODEL 10262222 ncrna LOC106146885 uncharacterized LOC106146885 NW_004955407 42486059 42491239 - 106146885 AGCD01007892;GBDF01113894;XR_001231505 MODEL 8919651 protein-coding Eps8l3 EPS8 signaling adaptor L3 ENCODES a protein that exhibits actin filament binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN regulation of hair cycle (ortholog); ASSOCIATED WITH autistic disorder (ortholog); hepatocellular carcinoma (ortholog); hereditary spastic paraplegia 63 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955435 13261730 13277117 - 102011142 AGCD01033199;GBDI01324674;XM_005388899;XM_005388900;XM_005388901 XP_005388956;XP_005388957;XP_005388958 MODEL 8823102 protein-coding Neil2 nei like DNA glycosylase 2 ENCODES a protein that exhibits microtubule binding (ortholog); ASSOCIATED WITH Atrioventricular Septal Defect 4 (ortholog); High Myopia (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); microtubule cytoskeleton (ortholog) NW_004955403 53037008 53044996 + 102029692 AGCD01003028;GBCE01081006;GBDF01253257;XM_005373825;XM_005373827;XM_013514559 XP_005373882;XP_005373884;XP_013370013 MODEL 9052458 ncrna LOC102002973 uncharacterized LOC102002973 NW_004955402 40884991 40894999 + 102002973 AGCD01001005;XR_259081 MODEL 8730107 pseudo LOC102007556 60S ribosomal protein L9 pseudogene NW_004955419 23050823 23052195 - 102007556 AGCD01020311 MODEL 8708635 pseudo LOC102017857 40S ribosomal protein S15a pseudogene NW_004955412 16023672 16024171 - 102017857 AGCD01012891;XM_005378627 MODEL 10305037 ncrna LOC106149143 uncharacterized LOC106149143 NW_004955438 19853349 19887763 + 106149143 AGCD01035502;GBCE01127379;XR_001235121 MODEL 8939920 protein-coding LOC102026980 stimulated by retinoic acid gene 6 protein homolog NW_004955419 28069848 28121163 - 102026980 AGCD01020453;AGCD01020454;AGCD01020455;AGCD01020456;AGCD01020457;AGCD01020458;AGCD01020459;GBDF01250558;XM_005382854;XM_005382855;XM_013513306;XM_013513307;XM_013513308;XM_013513309;XM_013513310 XP_005382911;XP_005382912;XP_013368760;XP_013368761;XP_013368762;XP_013368763;XP_013368764 MODEL 9054182 protein-coding LOC102007228 olfactory receptor 1L8-like NW_004955419 5406757 5407689 - 102007228 AGCD01019806;XM_005382527 XP_005382584 MODEL 8996171 protein-coding LOC102024971 keratin, type I cytoskeletal 16 NW_004955451 15920521 15934737 - 102024971 AGCD01043640;AGCD01043641;GBDJ01277851;XM_005394623 XP_005394680 MODEL 9031877 pseudo LOC102018200 60S ribosomal protein L9-like NW_004955501 4266517 4318674 - 102018200 AGCD01064120;AGCD01064121;AGCD01064122;AGCD01064123;AGCD01064124 MODEL 8908319 ncrna LOC102007558 uncharacterized LOC102007558 NW_004955420 29057445 29063697 + 102007558 AGCD01021493;GBDF01157337;XR_001233702;XR_260770 MODEL 9061272 pseudo LOC102002975 L-lactate dehydrogenase A chain pseudogene NW_004955402 36734047 36736688 - 102002975 AGCD01000933 MODEL 8708051 ncrna LOC102022541 uncharacterized LOC102022541 NW_004955538 1159133 1176031 - 102022541 AGCD01071047;AGCD01071048;AGCD01071049;AGCD01071050;GBDF01044132;XR_001232085;XR_001232086;XR_264795 MODEL 39133608 snrna U4 U4 spliceosomal RNA 8846742 pseudo LOC102026982 coiled-coil domain-containing protein 112-like NW_004955484 2263970 2269590 - 102026982 AGCD01058096;AGCD01058097;AGCD01058098 MODEL 8792492 protein-coding LOC102017859 C-type lectin domain family 4 member A-like NW_004955413 5371896 5380676 - 102017859 AGCD01013670;GBCE01108550;XM_005378875 XP_005378932 MODEL 9031301 pseudo LOC102018201 heat shock factor-binding protein 1 pseudogene NW_004955426 14759883 14760171 + 102018201 AGCD01026402;XM_005386144 MODEL 8878585 protein-coding Loricrin loricrin cornified envelope precursor protein ENCODES a protein that exhibits structural constituent of cytoskeleton (ortholog); structural constituent of skin epidermis (ortholog); INVOLVED IN keratinocyte differentiation (ortholog); peptide cross-linking (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955592 167139 169638 - 102007834 AGCD01076300;GBCC01001286;XM_005414606 XP_005414663 MODEL 8862774 protein-coding Klhdc3 kelch domain containing 3 ENCODES a protein that exhibits chromatin binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ubiquitin-dependent protein catabolic process via the C-end degron rule pathway (ortholog); ASSOCIATED WITH infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN chromatin (ortholog); Cul2-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955437 8989671 8995845 + 102028130 AGCD01034512;GBDK01093172;XM_005389738 XP_005389795 MODEL 8849203 protein-coding Taf1a TATA-box binding protein associated factor, RNA polymerase I subunit A PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH dilated cardiomyopathy (ortholog); familial restrictive cardiomyopathy 6 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN microtubule cytoskeleton (ortholog); nucleoplasm (ortholog); RNA polymerase transcription factor SL1 complex (ortholog) NW_004955520 1900802 1921350 + 102018636 AGCD01068068;AGCD01068069;GBBH01006250;XM_005409257;XM_005409258;XM_013507028;XM_013507029;XM_013507031 XP_005409314;XP_005409315;XP_013362482;XP_013362483;XP_013362485 MODEL 8942773 pseudo LOC102026985 pre-mRNA-splicing factor SPF27 pseudogene NW_004955490 6859427 6860069 - 102026985 AGCD01060240 MODEL 8818417 protein-coding Safb2 scaffold attachment factor B2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of androgen receptor signaling pathway (ortholog); Sertoli cell differentiation (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955495 3775301 3802642 + 102025921 AGCD01061879;AGCD01061880;AGCD01061881;GBBH01115695;GBDK01009747;XM_005405763 XP_005405820 MODEL 8925184 protein-coding Znf354c zinc finger protein 354C ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of sprouting angiogenesis (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 1 (ortholog); Sotos syndrome (ortholog); FOUND IN cytoplasm (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955417 2853263 2854930 + 102026863 AGCD01017893;XM_013512714 XP_013368168 MODEL 8779085 protein-coding Lox lysyl oxidase ENCODES a protein that exhibits collagen binding (ortholog); copper ion binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN aorta development (ortholog); ascending aorta development (ortholog); blood vessel development (ortholog); PARTICIPATES IN hypertension pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); aortic aneurysm (ortholog); aortic dissection (ortholog); FOUND IN collagen trimer (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955521 178290 193926 - 102005958 AGCD01068130;GBCE01000865;GBDK01279501;XM_005409287;XM_013507090 XP_005409344;XP_013362544 MODEL 8893851 protein-coding Neil3 nei like DNA glycosylase 3 ENCODES a protein that exhibits bubble DNA binding (ortholog); DNA N-glycosylase activity (ortholog); DNA-(apurinic or apyrimidinic site) endonuclease activity (ortholog); INVOLVED IN base-excision repair (ortholog); single strand break repair (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955403 30549779 30591757 - 102015268 AGCD01002399;GBDF01110451;XM_005373513;XM_013515218 XP_005373570;XP_013370672 MODEL 39132996 snrna U6 U6 spliceosomal RNA 8989405 protein-coding Sh2b2 SH2B adaptor protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); SH2 domain binding (ortholog); signaling adaptor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); B cell receptor signaling pathway (ortholog); B-1 B cell homeostasis (ortholog); PARTICIPATES IN insulin signaling pathway; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN actin filament (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955456 15253711 15265874 - 102016564 AGCD01046665;AGCD01046666;GBCB01101553;GBDI01137601;XM_013520635 XP_013376089 MODEL 8909037 protein-coding Scrn2 secernin 2 ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog) NW_004955451 13273421 13276563 + 102013575 AGCD01043464;GBDF01111085;XM_005394263;XM_005394264;XM_013519394;XM_013519395 XP_005394320;XP_005394321;XP_013374848;XP_013374849 MODEL 8877012 pseudo LOC102005786 transcription elongation factor B polypeptide 1 pseudogene NW_004955412 19308345 19308746 + 102005786 AGCD01012950;XM_005378228 MODEL 8919921 pseudo LOC102021225 ubiquitin domain-containing protein UBFD1 pseudogene NW_004955466 9782657 9783494 - 102021225 AGCD01051055 MODEL 8859781 ncrna LOC102025939 uncharacterized LOC102025939 NW_004955435 1521893 1545539 - 102025939 AGCD01032748;GBCE01014488;XR_001234909;XR_001234910;XR_001234911;XR_001234912 MODEL 9001120 protein-coding LOC102022908 interleukin-36 alpha-like NW_004955470 1315104 1317994 - 102022908 AGCD01052634;GBCC01044444;XM_013522691 XP_013378145 MODEL 8869251 protein-coding LOC102002978 zinc finger protein 14-like NW_004955607 144382 181560 + 102002978 AGCD01076977;GBCB01041249;XM_013510111;XM_013510112;XM_013510113 XP_013365565;XP_013365566;XP_013365567 MODEL 8868589 protein-coding Sh2b3 SH2B adaptor protein 3 ENCODES a protein that exhibits phosphate ion binding (ortholog); protein tyrosine kinase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cellular response to chemokine (ortholog); cellular response to interleukin-3 (ortholog); embryonic hemopoiesis (ortholog); PARTICIPATES IN erythropoietin signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); chronic myeloid leukemia (ortholog); colorectal cancer (ortholog) NW_004955482 8079905 8100791 + 102006034 AGCD01057503;GBDI01138139;XM_013503649 XP_013359103 MODEL 8822073 pseudo LOC102017862 olfactory receptor 502-like NW_004955414 23701731 23702443 - 102017862 AGCD01015518 MODEL 9061091 protein-coding LOC102023641 mimitin, mitochondrial NW_004955443 7676051 7676896 + 102023641 AGCD01038293;XM_005391974 XP_005392031 MODEL 8926501 pseudo LOC102024565 cryptochrome-1 pseudogene NW_004955480 6962604 6964523 - 102024565 AGCD01056693 MODEL 8901048 protein-coding Slain2 SLAIN motif family member 2 INVOLVED IN cytoplasmic microtubule organization (ortholog); microtubule nucleation (ortholog); positive regulation of microtubule polymerization (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); microtubule cytoskeleton (ortholog) NW_004955443 134631 231866 - 102023303 AGCD01038090;AGCD01038091;AGCD01038092;AGCD01038093;AGCD01038094;GBDI01178119;XM_005391877;XM_005391878;XM_013518102;XM_013518103 XP_005391934;XP_005391935;XP_013373556;XP_013373557 MODEL 8786200 protein-coding LOC102009121 zinc finger protein 345-like NW_004955569 1713912 1862497 + 102009121 AGCD01074678;AGCD01074679;AGCD01074680;AGCD01074681;AGCD01074682;AGCD01074683;AGCD01074684;AGCD01074685;AGCD01074686;AGCD01074687;AGCD01074688;AGCD01074689;AGCD01074690;AGCD01074691;AGCD01074692;XM_013509366 XP_013364820 MODEL 8740336 protein-coding LOC102008712 oxidized low-density lipoprotein receptor 1 NW_004955413 7662314 7721687 + 102008712 AGCD01013828;AGCD01013829;AGCD01013830;GBDF01111532;XM_005378938 XP_005378995 MODEL 8994818 protein-coding Epsti1 epithelial stromal interaction 1 INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to type II interferon (ortholog); gene expression (ortholog); ASSOCIATED WITH COVID-19 (ortholog); prostate cancer (ortholog) NW_004955518 790815 919869 - 102004964 AGCD01067745;AGCD01067746;AGCD01067747;AGCD01067748;AGCD01067749;GBDI01325591;XM_005409056;XM_013506970;XM_013506971 XP_005409113;XP_013362424;XP_013362425 MODEL 8880862 protein-coding Klhdc4 kelch domain containing 4 ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 4 (ortholog); CARBONIC ANHYDRASE VA DEFICIENCY, HYPERAMMONEMIA DUE TO (ortholog) NW_004955541 2026554 2065627 - 102027787 AGCD01071398;AGCD01071399;GBDJ01276056;XM_005411006;XM_005411007 XP_005411063;XP_005411064 MODEL 8897289 pseudo LOC102015217 transcription factor BTF3 pseudogene NW_004955500 7977756 7982393 + 102015217 AGCD01063969 MODEL 8731982 protein-coding LOC102002979 olfactory receptor 4F17-like NW_004955614 313170 316184 - 102002979 AGCD01077239;GBDF01177112;XM_013510137 XP_013365591 MODEL 9015187 protein-coding LOC102013435 endogenous retrovirus group K member 18 Pol protein-like NW_004955511 4811817 4815683 + 102013435 AGCD01066527;XM_013506412 XP_013361866 MODEL 8893980 protein-coding Wwtr1 WW domain containing transcription regulator 1 ENCODES a protein that exhibits protein homodimerization activity (ortholog); transcription coactivator activity (ortholog); transcription coregulator activity (ortholog); INVOLVED IN cilium assembly (ortholog); glomerulus development (ortholog); heart process (ortholog); ASSOCIATED WITH aceruloplasminemia (ortholog); alveolar rhabdomyosarcoma (ortholog); glycogen storage disease XV (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955448 745419 868313 - 102020732 AGCD01041237;AGCD01041238;GBCB01003406;GBDJ01135085;XM_005393000 XP_005393057 MODEL 9043153 protein-coding Gpr176 G protein-coupled receptor 176 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); circadian behavior (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955416 6735790 6879078 - 102013080 AGCD01016952;AGCD01016953;AGCD01016954;AGCD01016955;AGCD01016956;GBDJ01389643;XM_005381210 XP_005381267 MODEL 39131355 protein-coding ZNF358 zinc finger protein 358 8917395 protein-coding LOC102007561 vomeronasal type-1 receptor 48-like NW_004955421 21854981 21855904 - 102007561 AGCD01022122;XM_005383930 XP_005383987 MODEL 8950825 protein-coding Bhlhe22 basic helix-loop-helix family member e22 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); anterior commissure morphogenesis (ortholog); central nervous system projection neuron axonogenesis (ortholog); FOUND IN nucleus (ortholog) NW_004955444 14458307 14460441 - 102014620 AGCD01039122;GBDK01059279;XM_013518126 XP_013373580 MODEL 8817094 protein-coding Epx eosinophil peroxidase ENCODES a protein that exhibits peroxidase activity (ortholog); INVOLVED IN defense response to nematode (ortholog); eosinophil migration (ortholog); negative regulation of interleukin-10 production (ortholog); ASSOCIATED WITH allergic asthma (ortholog); asthma (ortholog); Eosinophilic Asthma (ortholog) NW_004955451 4818809 4828913 - 102029463 AGCD01043142;GBBH01198007;XM_005394034;XM_005394035 XP_005394091;XP_005394092 MODEL 39133609 snrna U4 U4 spliceosomal RNA 9009364 pseudo LOC102002981 non-histone chromosomal protein HMG-14 pseudogene NW_004955633 74576 86858 - 102002981 AGCD01077593;AGCD01077594;AGCD01077595;XM_005415041;XR_265177 MODEL 8855100 protein-coding Nek1 NIMA related kinase 1 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); kinase activity (ortholog); protein kinase activity (ortholog); INVOLVED IN cilium assembly (ortholog); DNA damage response (ortholog); kidney development (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 24 (ortholog); asphyxiating thoracic dystrophy (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cilium (ortholog) NW_004955403 36710248 36878901 + 102005546 AGCD01002546;AGCD01002547;AGCD01002548;AGCD01002549;GBDF01162306;GBDF01162307;XM_013513368 XP_013368822 MODEL 39132366 snrna U6 U6 spliceosomal RNA 9029045 protein-coding Hyou1 hypoxia up-regulated 1 ENCODES a protein that exhibits ATP binding (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum chaperone complex (ortholog); mitochondrion (ortholog) NW_004955412 20149104 20161378 - 102023677 AGCD01012996;GBDF01002863;XM_005378294;XM_005378295;XM_005378296;XM_005378297 XP_005378351;XP_005378352;XP_005378353;XP_005378354 MODEL 8768683 protein-coding Veph1 ventricular zone expressed PH domain containing 1 INVOLVED IN negative regulation of SMAD protein signal transduction (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); ASSOCIATED WITH long QT syndrome (ortholog) NW_004955448 8207272 8423712 - 102023211 AGCD01041437;AGCD01041438;AGCD01041439;AGCD01041440;AGCD01041441;AGCD01041442;AGCD01041443;AGCD01041444;GBCQ01036575;XM_005393090;XM_005393091;XM_013518627 XP_005393147;XP_005393148;XP_013374081 MODEL 8742374 protein-coding LOC102020374 atherin-like NW_004955437 223848 227296 + 102020374 AGCD01034111;GBDF01262028;XM_005389354;XM_005389355;XR_001235058 XP_005389411;XP_005389412 MODEL 10156530 protein-coding Znf358 zinc finger protein 358 ASSOCIATED WITH hereditary spastic paraplegia 39 (ortholog); mucolipidosis type IV (ortholog) NW_004955563 1714393 1716499 - 106147458 AGCD01074158;GBCE01028755;GBCE01028756;XM_013509147 XP_013364601 MODEL 8755376 protein-coding LOC102003292 E3 ubiquitin-protein ligase RNF114 NW_004955445 8256029 8268349 - 102003292 AGCD01039569;AGCD01039570;GBBH01035032;GBCB01026100;XM_005392324 XP_005392381 MODEL 8795890 protein-coding LOC102022909 olfactory receptor 52J3-like NW_004955414 20680067 20681005 + 102022909 AGCD01015387;XM_005380065 XP_005380122 MODEL 9020114 protein-coding Sh2d1a SH2 domain containing 1A ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN humoral immune response (ortholog); natural killer cell activation (ortholog); natural killer cell mediated cytotoxicity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Chediak-Higashi syndrome (ortholog); FOUND IN cytoplasm (ortholog) NW_004955473 10345407 10370535 - 102017976 AGCD01054093;AGCD01054094;GBCE01037166;XM_005401276 XP_005401333 MODEL 10126335 ncrna LOC106149144 uncharacterized LOC106149144 NW_004955438 16662973 16665666 + 106149144 AGCD01035422;GBDI01363185;XR_001235122 MODEL 9022008 protein-coding Hypk huntingtin interacting protein K ENCODES a protein that exhibits protein folding chaperone (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); protein stabilization (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); microtubule cytoskeleton (ortholog); nucleoplasm (ortholog) NW_004955416 10258357 10259699 + 102011762 AGCD01017126;GBDJ01074318;XM_005381406;XM_013512561 XP_005381463;XP_013368015 MODEL 8904809 ncrna LOC102024972 uncharacterized LOC102024972 NW_004955404 32364895 32437958 + 102024972 AGCD01004040;AGCD01004041;AGCD01004042;AGCD01004043;GBDF01162712;XR_001234931;XR_259330 MODEL 8858102 ncrna LOC102022916 uncharacterized LOC102022916 NW_004955416 23101471 23133043 - 102022916 AGCD01017543;AGCD01017544;GBBH01217074;XR_001233353 MODEL 8763200 protein-coding Spats1 spermatogenesis associated serine rich 1 NW_004955437 9952360 9984392 + 102024050 AGCD01034552;AGCD01034553;AGCD01034554;AGCD01034555;GBDF01084545;XM_005389820;XM_013517014;XM_013517015 XP_005389877;XP_013372468;XP_013372469 MODEL 8924920 ncrna LOC102008719 uncharacterized LOC102008719 NW_004955474 1262389 1267127 - 102008719 AGCD01054244;AGCD01054245;GBDI01098588;XR_263586 MODEL 8955269 pseudo LOC102015219 dnaJ homolog subfamily A member 1 pseudogene NW_004955502 7160071 7161415 + 102015219 AGCD01064431 MODEL 8977688 protein-coding Kynu kynureninase ENCODES a protein that exhibits kynureninase activity (ortholog); protein homodimerization activity (ortholog); pyridoxal phosphate binding (ortholog); INVOLVED IN anthranilate metabolic process (ortholog); L-tryptophan catabolic process (ortholog); L-tryptophan catabolic process to acetyl-CoA (ortholog); PARTICIPATES IN kynurenine metabolic pathway; tryptophan metabolic pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 1 (ortholog); Catel Manzke syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955440 9420141 9536767 + 102015154 AGCD01036380;AGCD01036381;AGCD01036382;AGCD01036383;AGCD01036384;GBCQ01101441;XM_005390777;XM_005390778;XM_005390779;XM_013517494;XM_013517495;XM_013517496;XR_001235271;XR_001235272;XR_001235273;XR_001235274 XP_005390834;XP_005390835;XP_005390836;XP_013372948;XP_013372949;XP_013372950 MODEL 8898343 protein-coding LOC102016969 tumor necrosis factor receptor superfamily member 10B NW_004955403 46394045 46434138 - 102016969 AGCD01002856;AGCD01002857;AGCD01002858;AGCD01002859;GBCE01037416;XM_013513950;XM_013513955;XM_013513957 XP_013369404;XP_013369409;XP_013369411 MODEL 8981198 protein-coding Tet1 tet methylcytosine dioxygenase 1 ENCODES a protein that exhibits 5-methylcytosine dioxygenase activity (ortholog); DNA binding (ortholog); iron ion binding (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); chromatin remodeling (ortholog); dendrite morphogenesis (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); hepatocellular carcinoma (ortholog); FOUND IN nucleus (ortholog) NW_004955425 20767406 20857165 + 102023376 AGCD01025760;AGCD01025761;AGCD01025762;AGCD01025763;AGCD01025764;GBDF01239503;XM_013514773 XP_013370227 MODEL 8863730 protein-coding Xab2 XPA binding protein 2 INVOLVED IN blastocyst development (ortholog); cerebral cortex development (ortholog); DNA-templated transcription (ortholog); PARTICIPATES IN nucleotide excision repair pathway; spliceosome pathway; ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 5 (ortholog); mucolipidosis type IV (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955563 1630403 1638333 + 102030358 AGCD01074153;GBDF01051839;XM_005413180 XP_005413237 MODEL 9063391 pseudo LOC102022920 40S ribosomal protein S20-like NW_004955481 1772016 1772737 + 102022920 AGCD01056849 MODEL 39133610 snrna U4 U4 spliceosomal RNA 8918715 protein-coding LOC102002983 uncharacterized LOC102002983 NW_004955403 53058177 53060011 - 102002983 AGCD01003030;GBDF01004642;GBDF01223597;XM_013514571 XP_013370025 MODEL 8850397 protein-coding LOC102026994 alcohol dehydrogenase 1-like NW_004955496 8178732 8194853 + 102026994 AGCD01062392;GBDI01262001;XM_005406279 XP_005406336 MODEL 8838920 protein-coding Xaf1 XIAP associated factor 1 ENCODES a protein that exhibits molecular sequestering activity (ortholog); INVOLVED IN negative regulation of protein-containing complex assembly (ortholog); negative regulation of type I interferon production (ortholog); response to interferon-beta (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Colonic Neoplasms (ortholog); Colorectal Neoplasms (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955467 12240075 12257595 + 102009488 AGCD01051626;AGCD01051627;GBBH01163422;XM_005399676;XM_005399677 XP_005399733;XP_005399734 MODEL 39133611 snrna U4 U4 spliceosomal RNA 8917757 protein-coding LOC102024566 chromosome unknown open reading frame, human C17orf75 INVOLVED IN intracellular protein transport (ortholog); vesicle tethering to Golgi (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955481 7281735 7293246 - 102024566 AGCD01057058;AGCD01057059;GBBH01001483;XM_005402816;XM_013503453 XP_005402873;XP_013358907 MODEL 8889200 protein-coding Desi1 desumoylating isopeptidase 1 ENCODES a protein that exhibits deSUMOylase activity (ortholog); identical protein binding (ortholog); importin-alpha family protein binding (ortholog); INVOLVED IN protein desumoylation (ortholog); protein export from nucleus (ortholog); regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); FOUND IN cytosol (ortholog); protein-containing complex (ortholog) NW_004955413 27115130 27135625 - 102021117 AGCD01014495;GBDK01134746;XM_005379358;XM_005379359 XP_005379415;XP_005379416 MODEL 39132997 snrna U6 U6 spliceosomal RNA 9056695 protein-coding Slamf1 signaling lymphocytic activation molecule family member 1 ENCODES a protein that exhibits identical protein binding (ortholog); SH2 domain binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN leukocyte chemotaxis involved in inflammatory response (ortholog); myeloid dendritic cell activation involved in immune response (ortholog); natural killer cell differentiation (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); phagocytic vesicle (ortholog) NW_004955468 12336744 12383917 - 102019586 AGCD01052149;AGCD01052150;AGCD01052151;GBDK01308588;XM_005400212;XM_013522533;XM_013522535 XP_005400269;XP_013377987;XP_013377989 MODEL 8734773 protein-coding Hypm huntingtin interacting protein M ASSOCIATED WITH autistic disorder (ortholog); Dwarfism (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955601 38906 39259 + 102029686 AGCD01076744;XM_005414824 XP_005414881 MODEL 8824140 protein-coding Sh2d1b SH2 domain containing 1B INVOLVED IN natural killer cell mediated cytotoxicity (ortholog); negative regulation of natural killer cell mediated cytotoxicity (ortholog); peptidyl-tyrosine phosphorylation (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955462 13909266 13934239 + 102013590 AGCD01049435;GBDK01188618;XM_005398275;XR_001236587 XP_005398332 MODEL 10070040 ncrna LOC106146886 uncharacterized LOC106146886 NW_004955500 8040028 8047962 + 106146886 AGCD01063972;AGCD01063973;XR_001231504 MODEL 9005109 ncrna LOC102024567 uncharacterized LOC102024567 NW_004955418 19565708 19587079 + 102024567 AGCD01019196;GBCQ01122903;XR_260573 MODEL 39132998 snrna U6 U6 spliceosomal RNA 8705779 protein-coding LOC102007563 uncharacterized LOC102007563 NW_004955493 470268 489066 - 102007563 AGCD01060852;AGCD01060853;AGCD01060854;GBDJ01366389;XM_013504742 XP_013360196 MODEL 8746899 pseudo LOC102008721 28S ribosomal protein S36, mitochondrial pseudogene NW_004955476 2667352 2667663 - 102008721 AGCD01055231 MODEL 9003741 protein-coding Slamf6 SLAM family member 6 INVOLVED IN natural killer cell differentiation (ortholog); natural killer cell proliferation (ortholog); positive regulation of interleukin-17 production (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955468 12233629 12264502 - 102003749 AGCD01052148;GBBH01155535;XM_013522471;XM_013522472;XM_013522473;XM_013522474 XP_013377925;XP_013377926;XP_013377927;XP_013377928 MODEL 8953690 protein-coding LOC102012212 putative DBH-like monooxygenase protein 2 NW_004955494 1292620 1301008 + 102012212 AGCD01061393;GBDF01104482;XM_005405397 XP_005405454 MODEL 10174656 pseudo LOC106146887 52 kDa repressor of the inhibitor of the protein kinase-like NW_004955500 6605638 6613384 - 106146887 AGCD01063887 MODEL 39133000 snrna U6 U6 spliceosomal RNA 8849995 protein-coding Nek10 NIMA related kinase 10 ENCODES a protein that exhibits protein kinase activity (ortholog); INVOLVED IN mucociliary clearance (ortholog); positive regulation of MAP kinase activity (ortholog); positive regulation of protein autophosphorylation (ortholog); ASSOCIATED WITH primary ciliary dyskinesia 44 (ortholog); FOUND IN protein kinase complex (ortholog) NW_004955430 18754292 18988716 - 102016299 AGCD01029701;AGCD01029702;AGCD01029703;AGCD01029704;GBBH01140857;XM_005387500;XM_005387501;XM_005387502;XM_013515617;XM_013515618;XM_013515619;XM_013515620;XM_013515621;XM_013515622;XM_013515623;XM_013515624 XP_005387557;XP_005387558;XP_005387559;XP_013371071;XP_013371072;XP_013371073;XP_013371074;XP_013371075;XP_013371076;XP_013371077;XP_013371078 MODEL 9034852 protein-coding L1cam L1 cell adhesion molecule ENCODES a protein that exhibits identical protein binding (ortholog); integrin binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN axon development (ortholog); axon guidance (ortholog); axonal fasciculation (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); Alzheimer's disease (ortholog); anxiety disorder (ortholog); FOUND IN axon (ortholog); axonal growth cone (ortholog); cell surface (ortholog) NW_004955580 548442 561580 - 102020500 AGCD01075610;GBBH01043761;XM_013509717 XP_013365171 MODEL 8929087 protein-coding Loxhd1 lipoxygenase homology PLAT domains 1 INVOLVED IN sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 77 (ortholog); chromosome 18q deletion syndrome (ortholog); FOUND IN stereocilium (ortholog) NW_004955402 31985616 32144040 - 102030583 AGCD01000810;AGCD01000811;AGCD01000812;AGCD01000813;AGCD01000814;GBDF01270739;XM_005372874;XM_005372875 XP_005372931;XP_005372932 MODEL 8705060 pseudo LOC102008726 peptidyl-prolyl cis-trans isomerase FKBP11 pseudogene NW_004955481 3772130 3773131 + 102008726 AGCD01056916 MODEL 9022313 protein-coding Slamf7 SLAM family member 7 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of natural killer cell activation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autoimmune interstitial lung, joint, and kidney disease (ortholog); COVID-19 (ortholog); FOUND IN endoplasmic reticulum (ortholog); external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955468 12440157 12457445 + 102020900 AGCD01052152;GBDK01184416;XM_005400217;XM_013522531 XP_005400274;XP_013377985 MODEL 8987797 pseudo LOC102019451 arylacetamide deacetylase-like NW_004955448 3159746 3167553 - 102019451 AGCD01041306 MODEL 10093966 ncrna LOC106149145 uncharacterized LOC106149145 NW_004955438 11573033 11608014 - 106149145 AGCD01035244;AGCD01035245;GBDF01223256;XR_001235123 MODEL 39133001 snrna U6 U6 spliceosomal RNA 8948933 protein-coding LOC102021231 NKG2-A/NKG2-B type II integral membrane protein-like NW_004955413 7459317 7466055 + 102021231 AGCD01013820;AGCD01013821;GBDK01207340;XM_013511292 XP_013366746 MODEL 39131424 protein-coding XBP1 X-box binding protein 1 8904082 protein-coding Gpr179 G protein-coupled receptor 179 INVOLVED IN protein localization to plasma membrane (ortholog); response to light stimulus (ortholog); visual perception (ortholog); ASSOCIATED WITH congenital stationary night blindness (ortholog); congenital stationary night blindness 1B (ortholog); congenital stationary night blindness 1E (ortholog); FOUND IN cell tip (ortholog); dendrite (ortholog); dendrite terminus (ortholog) NW_004955451 13545994 13560231 - 102017187 AGCD01043488;AGCD01043489;GBDF01207645;XM_005394606 XP_005394663 MODEL 8805379 protein-coding L2hgdh L-2-hydroxyglutarate dehydrogenase ENCODES a protein that exhibits 2-hydroxyglutarate dehydrogenase activity (ortholog); INVOLVED IN small molecule metabolic process (ortholog); ASSOCIATED WITH 2-hydroxyglutaric aciduria (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); cerebellar ataxia (ortholog); FOUND IN membrane (ortholog); mitochondrion (ortholog) NW_004955409 12485003 12531759 + 102023983 AGCD01009549;AGCD01009550;AGCD01009551;GBBH01069421;XM_005376827 XP_005376884 MODEL 39133003 snrna U6 U6 spliceosomal RNA 9008672 protein-coding Desi2 desumoylating isopeptidase 2 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); K48-linked deubiquitinase activity (ortholog); K63-linked deubiquitinase activity (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog); Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 2 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955406 7881815 7894690 + 102007966 AGCD01005779;GBBH01150375;GBCC01014190;XM_013520388 XP_013375842 MODEL 8887502 ncrna LOC102023647 uncharacterized LOC102023647 NW_004955402 2582240 2583206 - 102023647 AGCD01000084;GBDI01337991;XR_259016 MODEL 8897081 pseudo LOC102007231 ubiquitin-40S ribosomal protein S27a-like NW_004955484 7752603 7753800 - 102007231 AGCD01058345 MODEL 8957407 pseudo LOC102017864 selenoprotein K-like NW_004955415 7938080 7938777 - 102017864 AGCD01016059 MODEL 9055917 protein-coding LOC102024572 60S ribosomal protein L39-like NW_004955485 6403559 6408184 + 102024572 AGCD01058619;GBCE01062521;GBDK01223219;XM_013504070 XP_013359524 MODEL 8840693 protein-coding Sh2d2a SH2 domain containing 2A INVOLVED IN T cell proliferation (ortholog); PARTICIPATES IN Erk5 MAPK signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); COVID-19 (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955545 2881954 2891021 - 102010633 AGCD01071927;GBBH01050829;XM_005411705;XM_005411707;XM_005411708;XM_005411709;XM_005411712;XM_013508210 XP_005411762;XP_005411764;XP_005411765;XP_005411766;XP_005411769;XP_013363664 MODEL 8989790 protein-coding LOC102028698 E3 ubiquitin-protein ligase RLIM-like NW_004955571 1596804 1605350 - 102028698 AGCD01074887;GBDK01061491;XM_005413647 XP_005413704 MODEL 8758145 protein-coding Tet2 tet methylcytosine dioxygenase 2 ENCODES a protein that exhibits 5-methylcytosine dioxygenase activity (ortholog); ferrous iron binding (ortholog); zinc ion binding (ortholog); INVOLVED IN chromosomal 5-methylcytosine DNA demethylation, oxidation pathway (ortholog); cytosine metabolic process (ortholog); hematopoietic stem cell homeostasis (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); acute promyelocytic leukemia (ortholog); angioimmunoblastic T-cell lymphoma (ortholog) NW_004955496 3885684 3963056 - 102010383 AGCD01062302;AGCD01062303;AGCD01062304;GBCC01026201;XM_005406227;XM_013505406;XM_013505407;XM_013505408;XM_013505409;XR_001231406 XP_005406284;XP_013360860;XP_013360861;XP_013360862;XP_013360863 MODEL 8738905 protein-coding LOC102009123 transmembrane protease serine 11E NW_004955447 4505454 4611439 + 102009123 AGCD01040721;AGCD01040722;AGCD01040723;AGCD01040724;AGCD01040725;GBDF01013955;XM_005392824;XM_005392826;XM_013518541 XP_005392881;XP_005392883;XP_013373995 MODEL 8867073 ncrna LOC102006117 uncharacterized LOC102006117 NW_004955468 6251392 6252627 - 102006117 AGCD01051983;GBDF01085640;XR_263393 MODEL 8716519 pseudo LOC102002984 60S ribosomal protein L8 pseudogene NW_004955403 16745732 16746501 + 102002984 AGCD01002067 MODEL 8886399 protein-coding LOC102009898 prolactin-like NW_004955576 934768 939343 + 102009898 AGCD01075348;XM_013509612 XP_013365066 MODEL 8710499 ncrna LOC102007232 uncharacterized LOC102007232 NW_004955484 9389101 9390143 - 102007232 AGCD01058415;GBDF01039018;XR_001231046 MODEL 39133612 snrna U4 U4 spliceosomal RNA 10327988 ncrna LOC106146888 uncharacterized LOC106146888 NW_004955407 42514785 42553849 - 106146888 AGCD01007892;AGCD01007893;XR_001231507 MODEL 8924289 protein-coding Ppp1r17 protein phosphatase 1 regulatory subunit 17 ENCODES a protein that exhibits phosphatase inhibitor activity (ortholog); protein phosphatase inhibitor activity (ortholog); protein serine/threonine phosphatase inhibitor activity (ortholog); INVOLVED IN regulation of phosphatase activity (ortholog); ASSOCIATED WITH familial hypercholesterolemia (ortholog); Hypercholesterolemia (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955410 32720954 32737676 + 102027052 AGCD01011349;XM_005377523;XM_005377524 XP_005377580;XP_005377581 MODEL 39133613 snrna U4 U4 spliceosomal RNA 8924855 protein-coding Upf3b UPF3B regulator of nonsense mediated mRNA decay ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN brain development (ortholog); neuron projection development (ortholog); nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); cataract (ortholog); FOUND IN centriolar satellite (ortholog); cytosol (ortholog); exon-exon junction complex (ortholog) NW_004955534 176553 193033 + 102007935 AGCD01070441;GBDK01194801;XM_005410430;XM_005410431;XM_005410432 XP_005410487;XP_005410488;XP_005410489 MODEL 9026018 protein-coding Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B ENCODES a protein that exhibits RNA polymerase I core promoter sequence-specific DNA binding (ortholog); INVOLVED IN RNA polymerase I preinitiation complex assembly (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH Lynch syndrome (ortholog); mismatch repair cancer syndrome (ortholog); orofacial cleft 1 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); RNA polymerase I core factor complex (ortholog) NW_004955487 5359132 5394564 + 102025691 AGCD01059330;GBDF01081287;XM_005404399 XP_005404456 MODEL 8979506 protein-coding LOC102022923 chymotrypsinogen B-like NW_004955484 2274952 2282008 + 102022923 AGCD01058099;AGCD01058100;GBDF01005502;XM_005403451;XM_013503859 XP_005403508;XP_013359313 MODEL 8716099 protein-coding L3hypdh trans-L-3-hydroxyproline dehydratase ENCODES a protein that exhibits hydro-lyase activity (ortholog); proline racemase activity (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955466 13196223 13205339 - 102008078 AGCD01051152;GBCQ01072766;XM_005399227;XR_001236806 XP_005399284 MODEL 9030148 ncrna LOC102020378 uncharacterized LOC102020378 NW_004955538 189557 202222 + 102020378 AGCD01070991;AGCD01070992;AGCD01070993;GBBH01198262;XR_001232102;XR_264784;XR_264785;XR_264786;XR_264787 MODEL 39133614 snrna U4 U4 spliceosomal RNA 9050485 protein-coding Gpr18 G protein-coupled receptor 18 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN CD8-positive, alpha-beta intraepithelial T cell differentiation (ortholog); CD8-positive, gamma-delta intraepithelial T cell differentiation (ortholog); negative regulation of leukocyte chemotaxis (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly (ortholog); holoprosencephaly 5 (ortholog) NW_004955404 11293897 11321072 + 102011942 AGCD01003417;AGCD01003418;GBDK01169466;XM_005374062;XM_005374063 XP_005374119;XP_005374120 MODEL 8883696 protein-coding Znf362 zinc finger protein 362 ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog) NW_004955452 11449950 11472777 + 102007183 AGCD01044337;GBCQ01121653;XM_005395109 XP_005395166 MODEL 9031037 protein-coding Scrn3 secernin 3 INVOLVED IN detection of temperature stimulus involved in sensory perception of pain (ortholog); ASSOCIATED WITH split hand-foot malformation 5 (ortholog) NW_004955449 935061 960514 - 102007384 AGCD01041776;AGCD01041777;AGCD01041778;GBDJ01173998;XM_005393190;XM_013518736 XP_005393247;XP_013374190 MODEL 9034923 protein-coding LOC102022925 cocaine esterase NW_004955484 9829619 9858982 - 102022925 AGCD01058433;AGCD01058434;AGCD01058435;GBDI01223354;XM_005403719;XM_005403721 XP_005403776;XP_005403778 MODEL 8846820 ncrna LOC102028699 uncharacterized LOC102028699 NW_004955447 14732822 14788878 - 102028699 AGCD01041020;AGCD01041021;GBDF01081861;XR_262433 MODEL 8839753 ncrna LOC102008729 uncharacterized LOC102008729 NW_004955419 12989057 12990429 + 102008729 AGCD01019990;GBDF01083945;XR_001233562 MODEL 10128271 ncrna LOC106149146 uncharacterized LOC106149146 NW_004955438 11525394 11532566 - 106149146 AGCD01035241;AGCD01035242;GBDF01176469;XR_001235124 MODEL 9018986 protein-coding Epyc epiphycan INVOLVED IN articular cartilage development (ortholog); bone development (ortholog); sensory perception of sound (ortholog); FOUND IN extracellular matrix (ortholog) NW_004955405 28182890 28212864 - 102018797 AGCD01005233;GBCE01000127;XM_005374447 XP_005374504 MODEL 9049939 protein-coding LOC102018205 carbonyl reductase [NADPH] 2 NW_004955506 1131548 1133857 + 102018205 AGCD01065246;GBDF01237291;XM_005407225 XP_005407282 MODEL 39132367 snrna U6 U6 spliceosomal RNA 9001109 protein-coding Loxl1 lysyl oxidase like 1 ENCODES a protein that exhibits oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor (ortholog); protein-lysine 6-oxidase activity (ortholog); INVOLVED IN aorta development (ortholog); response to lipopolysaccharide (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); FOUND IN acrosomal vesicle (ortholog); basement membrane (ortholog); extracellular matrix (ortholog) NW_004955450 3715109 3734641 - 102022243 AGCD01042442;GBBH01119228;XM_005393588 XP_005393645 MODEL 8899020 pseudo LOC102007233 THAP domain-containing protein 5 pseudogene NW_004955419 22760508 22761334 - 102007233 AGCD01020307 MODEL 8734583 protein-coding Xbp1 X-box binding protein 1 ENCODES a protein that exhibits chromatin DNA binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN adipose tissue development (ortholog); angiogenesis (ortholog); cellular response to amino acid stimulus (ortholog); PARTICIPATES IN endoplasmic reticulum stress - the unfolded protein response pathway; forkhead class A signaling pathway; ASSOCIATED WITH Acute-On-Chronic Liver Failure (ortholog); borna disease (ortholog); Breast Cancer, Familial (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955455 3037885 3041827 - 102023773 AGCD01045609;GBDI01012427;GBDK01000036;XM_013520381 XP_013375835 MODEL 10379265 protein-coding LOC106149147 thyroid receptor-interacting protein 11-like NW_004955438 14241493 14271015 - 106149147 AGCD01035332;AGCD01035333;AGCD01035334;AGCD01035335;AGCD01035336;XM_013517146 XP_013372600 MODEL 8796380 protein-coding Klhdc7a kelch domain containing 7A ASSOCIATED WITH Breast Neoplasms (ortholog); chromosome 1p36 deletion syndrome (ortholog) NW_004955527 689631 696250 - 102019840 AGCD01069385;GBCQ01005985;XM_005409805 XP_005409862 MODEL 8988258 protein-coding LOC102007567 uncharacterized LOC102007567 NW_004955494 1182666 1184612 - 102007567 AGCD01061392;GBDI01027077;XM_005405391 XP_005405448 MODEL 8934314 ncrna LOC102023955 uncharacterized LOC102023955 NW_004955545 518387 525432 + 102023955 AGCD01071798;AGCD01071799;GBDF01054218;XR_264866 MODEL 39132368 snrna U6 U6 spliceosomal RNA 10316768 ncrna LOC106149148 uncharacterized LOC106149148 NW_004955438 16172378 16176430 + 106149148 AGCD01035397;XR_001235127;XR_001235128 MODEL 8867854 protein-coding Klhdc7b kelch domain containing 7B ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog) NW_004955413 33534794 33536614 + 102006563 AGCD01014677;XM_005379588 XP_005379645 MODEL 39133615 snrna U4 U4 spliceosomal RNA 8843691 protein-coding LOC102005787 olfactory receptor 147-like NW_004955412 25191307 25192245 + 102005787 AGCD01013140;XM_005378415 XP_005378472 MODEL 9008245 pseudo LOC102023956 NKAP-like protein NW_004955439 11386279 11387735 - 102023956 AGCD01035904 MODEL 8829381 protein-coding L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); histone H4K20me2 reader activity (ortholog); INVOLVED IN chromatin organization (ortholog); constitutive heterochromatin formation (ortholog); hemopoiesis (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; ASSOCIATED WITH breast cancer (ortholog); focal epilepsy (ortholog); genetic disease (ortholog); FOUND IN chromatin (ortholog); chromatin lock complex (ortholog); condensed chromosome (ortholog) NW_004955445 13621007 13645809 - 102025953 AGCD01039799;GBDF01306919;GBDK01005004;XM_013518251 XP_013373705 MODEL 9016724 pseudo LOC102015221 protein ARMCX6-like NW_004955503 7648675 7650244 + 102015221 AGCD01064797 MODEL 8904931 protein-coding Sh2d3a SH2 domain containing 3A ASSOCIATED WITH mucolipidosis type IV (ortholog) NW_004955495 2758214 2769867 + 102003978 AGCD01061799;GBDJ01075053;XM_005405690;XM_005405691;XM_005405692;XM_005405693;XM_005405694 XP_005405747;XP_005405748;XP_005405749;XP_005405750;XP_005405751 MODEL 39132369 snrna U6 U6 spliceosomal RNA 9067626 protein-coding Spats2 spermatogenesis associated serine rich 2 FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955500 8174233 8300424 + 102018308 AGCD01063983;AGCD01063984;AGCD01063985;AGCD01063986;GBDF01304771;XM_013505714;XM_013505715 XP_013361168;XP_013361169 MODEL 8826985 protein-coding LOC102028700 UDP-glucuronosyltransferase 2A3-like NW_004955447 3438986 3450074 + 102028700 AGCD01040614;AGCD01040615;AGCD01040616;GBDK01244445;XM_013518566 XP_013374020 MODEL 8899522 protein-coding Eqtn equatorin INVOLVED IN acrosomal vesicle exocytosis (ortholog); endocytosis (ortholog); establishment of localization in cell (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); inner acrosomal membrane (ortholog) NW_004955472 7554243 7563620 + 102024109 AGCD01053624;GBDF01050220;XM_005401145 XP_005401202 MODEL 8959528 protein-coding LOC102022542 uncharacterized protein DDB_G0290301-like NW_004955539 3415874 3417143 + 102022542 AGCD01071252;GBDF01156883;XM_005410907 XP_005410964 MODEL 39132371 snrna U6 U6 spliceosomal RNA 8827671 protein-coding Sh2d3c SH2 domain containing 3C ASSOCIATED WITH congenital disorder of glycosylation Iu (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); FOUND IN cytosol (ortholog) NW_004955419 891133 921062 + 102026425 AGCD01019621;AGCD01019622;AGCD01019623;GBDF01146187;XM_005382410 XP_005382467 MODEL 8952261 ncrna LOC102017871 uncharacterized LOC102017871 NW_004955416 29852903 29861728 + 102017871 AGCD01017668;GBDF01099351;XR_001233381;XR_260437 MODEL 8739202 ncrna LOC102024573 uncharacterized LOC102024573 NW_004955486 1484368 1502960 + 102024573 AGCD01058956;GBBH01036206;XR_263940 MODEL 150537124 mirna MIR3618 microRNA 3618 9039029 protein-coding LOC102012215 aldose reductase-related protein 2-like NW_004955494 7960872 8029450 - 102012215 AGCD01061559;AGCD01061560;AGCD01061561;AGCD01061562;AGCD01061563;AGCD01061564;AGCD01061565;AGCD01061566;AGCD01061567;AGCD01061568;AGCD01061569;GBBH01186150;XM_013505016 XP_013360470 MODEL 9004444 protein-coding Tmprss4 transmembrane serine protease 4 ENCODES a protein that exhibits serine-type peptidase activity (ortholog); INVOLVED IN negative regulation of growth rate (ortholog); protein processing (ortholog); proteolysis (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); COVID-19 (ortholog); FOUND IN extracellular space (ortholog); secretory granule (ortholog) NW_004955412 19258955 19292766 + 102004917 AGCD01012950;GBDJ01299656;XM_005378227 XP_005378284 MODEL 8960099 protein-coding Loxl2 lysyl oxidase like 2 ENCODES a protein that exhibits calcium ion binding (ortholog); copper ion binding (ortholog); oligosaccharide binding (ortholog); INVOLVED IN collagen fibril organization (ortholog); endothelial cell migration (ortholog); endothelial cell proliferation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Breast Neoplasms (ortholog); Conotruncal Cardiac Defects (ortholog); FOUND IN basement membrane (ortholog); chromatin (ortholog); endoplasmic reticulum (ortholog) NW_004955403 46503226 46583807 - 102017940 AGCD01002860;AGCD01002861;AGCD01002862;GBBH01137562;XM_005373698 XP_005373755 MODEL 9068206 pseudo LOC102022544 caspase-3 pseudogene NW_004955543 215177 216358 - 102022544 AGCD01071566 MODEL 8810185 pseudo LOC102025943 heterogeneous nuclear ribonucleoproteins A2/B1-like NW_004955543 2450899 2498166 - 102025943 AGCD01071653;AGCD01071654 MODEL 8991466 protein-coding Tet3 tet methylcytosine dioxygenase 3 ENCODES a protein that exhibits 5-methylcytosine dioxygenase activity (ortholog); methyl-CpG binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN epigenetic programing of male pronucleus (ortholog); positive regulation of gene expression via chromosomal CpG island demethylation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Beck-Fahrner Syndrome (ortholog); congenital disorder of glycosylation type IIb (ortholog); FOUND IN cytoplasm (ortholog); female pronucleus (ortholog); male pronucleus (ortholog) NW_004955424 11612124 11722130 - 102006148 AGCD01024571;AGCD01024572;AGCD01024573;GBDK01361608;XM_005385528;XM_005385529;XM_005385532;XM_013514633;XM_013514634;XM_013514636 XP_005385585;XP_005385586;XP_005385589;XP_013370087;XP_013370088;XP_013370090 MODEL 8984887 ncrna LOC102021233 uncharacterized LOC102021233 NW_004955471 12839000 12842044 - 102021233 AGCD01053308;GBDF01096973;XR_001237056 MODEL 10230329 ncrna LOC106146889 uncharacterized LOC106146889 NW_004955500 6613761 6631043 + 106146889 AGCD01063888;GBBH01027636;XR_001231506 MODEL 8893325 protein-coding Iah1 isoamyl acetate hydrolyzing esterase 1 (putative) ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN gene expression (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neonatal Inflammatory Skin and Bowel Disease 1 (ortholog); NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, HYPOTONIA, NYSTAGMUS, AND SEIZURES (ortholog) NW_004955487 5172505 5180132 + 102024013 AGCD01059322;GBDJ01007583;XM_005404396 XP_005404453 MODEL 8983235 protein-coding LOC102019452 cytochrome b reductase 1 ENCODES a protein that exhibits identical protein binding (ortholog); oxidoreductase activity, acting on metal ions (ortholog); transmembrane ascorbate ferrireductase activity (ortholog); INVOLVED IN ascorbate homeostasis (ortholog); intracellular iron ion homeostasis (ortholog); multicellular organismal-level iron ion homeostasis (ortholog); PARTICIPATES IN iron uptake pathway; ASSOCIATED WITH COVID-19 (ortholog); split hand-foot malformation 5 (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); membrane (ortholog) NW_004955449 3368976 3394405 - 102019452 AGCD01041848;AGCD01041849;AGCD01041850;AGCD01041851;GBCE01000144;XM_005393233;XM_013518792 XP_005393290;XP_013374246 MODEL 8867653 protein-coding LOC102022545 speckle-type POZ protein A-like NW_004955546 32587 33360 - 102022545 AGCD01071944;XM_005411814 XP_005411871 MODEL 8700353 protein-coding Klhdc8a kelch domain containing 8A ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955406 41080154 41087381 - 102008180 AGCD01006670;GBCQ01093234;XM_005375356 XP_005375413 MODEL 8715938 pseudo LOC102003293 exportin-6 pseudogene NW_004955445 11816035 11825133 + 102003293 AGCD01039717 MODEL 8877882 protein-coding Tmprss5 transmembrane serine protease 5 ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); FOUND IN neuronal cell body (ortholog); plasma membrane (ortholog) NW_004955412 15319945 15333161 - 102009364 AGCD01012870;GBDF01234580;XM_013510950 XP_013366404 MODEL 9009561 protein-coding Sag S-antigen visual arrestin ENCODES a protein that exhibits opsin binding (ortholog); phosphoprotein binding (ortholog); spectrin binding (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; visual phototransduction pathway; ASSOCIATED WITH cone dystrophy (ortholog); congenital stationary night blindness (ortholog); fundus dystrophy (ortholog); FOUND IN photoreceptor inner segment (ortholog); photoreceptor outer segment (ortholog) NW_004955453 2845561 2878342 - 102009796 AGCD01044642;AGCD01044643;AGCD01044644;AGCD01044645;GBDK01342716;XM_005395351;XM_005395352;XM_013519856;XM_013519857 XP_005395408;XP_005395409;XP_013375310;XP_013375311 MODEL 8862130 ncrna LOC102007234 uncharacterized LOC102007234 NW_004955485 7286010 7288361 - 102007234 AGCD01058650;GBBH01030082;XR_263917 MODEL 8902059 pseudo LOC102026995 protein GVQW1-like NW_004955499 7602987 7604961 + 102026995 AGCD01063594 MODEL 8747515 protein-coding Det1 DET1 partner of COP1 E3 ubiquitin ligase ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin protein ligase binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); protein ubiquitination (ortholog); protein-containing complex assembly (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (ortholog); Cul4A-RING E3 ubiquitin ligase complex (ortholog) NW_004955416 16393199 16408144 + 102008098 AGCD01017354;AGCD01017355;GBCB01056645;XM_005381574;XM_005381575;XM_013512684;XM_013512685 XP_005381631;XP_005381632;XP_013368138;XP_013368139 MODEL 9009383 pseudo LOC102003295 gonadotropin-releasing hormone receptor pseudogene NW_004955447 5170735 5171274 + 102003295 AGCD01040747;XM_005392953 MODEL 9065088 pseudo LOC102007239 40S ribosomal protein S7 pseudogene NW_004955421 17106374 17106961 + 102007239 AGCD01022014 MODEL 8918116 protein-coding Klhdc8b kelch domain containing 8B INVOLVED IN mitotic cytokinetic process (ortholog); mitotic nuclear division (ortholog); nuclear chromosome segregation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); carnitine-acylcarnitine translocase deficiency (ortholog); FOUND IN cellularization cleavage furrow (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955532 1158888 1162710 + 102011144 AGCD01070167;GBCQ01092730;GBDI01121619;XM_013507665 XP_013363119 MODEL 8916098 protein-coding Nek11 NIMA related kinase 11 ENCODES a protein that exhibits ATP binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN intracellular signal transduction (ortholog); mitotic intra-S DNA damage checkpoint signaling (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955501 7107858 7375079 - 102012557 AGCD01064204;AGCD01064205;AGCD01064206;AGCD01064207;AGCD01064208;AGCD01064209;AGCD01064210;AGCD01064211;AGCD01064212;AGCD01064213;AGCD01064214;GBDK01060055;XM_005406852;XM_005406853;XM_005406856;XM_005406857;XM_013505736 XP_005406909;XP_005406910;XP_005406913;XP_005406914;XP_013361190 MODEL 9031914 protein-coding LOC102020379 cytochrome c oxidase subunit 4 isoform 1, mitochondrial INVOLVED IN response to nutrient (ortholog); ASSOCIATED WITH mitochondrial complex IV deficiency nuclear type 16 (ortholog); persistent fetal circulation syndrome (ortholog); protein-energy malnutrition (ortholog); FOUND IN cytosol (ortholog); mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog) NW_004955541 885824 890824 + 102020379 AGCD01071364;GBBH01003940;GBCB01002429;XM_005410982 XP_005411039 MODEL 8874406 protein-coding Tmprss6 transmembrane serine protease 6 INVOLVED IN BMP signaling pathway (ortholog); intracellular iron ion homeostasis (ortholog); membrane protein proteolysis (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); genetic disease (ortholog); FOUND IN extracellular space (ortholog); plasma membrane (ortholog) NW_004955413 23579946 23615277 - 102008211 AGCD01014332;AGCD01014333;GBBH01155445;GBDK01356744;XM_013511592;XM_013511593 XP_013367046;XP_013367047 MODEL 150537109 mirna MIR363 microRNA 363 8985855 protein-coding LOC102024577 olfactory receptor 13-like NW_004955491 398929 399861 + 102024577 AGCD01060332;XM_005404881 XP_005404938 MODEL 8835658 pseudo LOC102016974 RNA-binding protein 7 pseudogene NW_004955405 9209002 9209500 - 102016974 AGCD01004763 MODEL 10378164 ncrna LOC106149149 uncharacterized LOC106149149 NW_004955438 16722212 16730852 + 106149149 AGCD01035423;XR_001235130 MODEL 9030923 protein-coding Scrt1 scratch family transcriptional repressor 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of neuron migration (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); FOUND IN nuclear body (ortholog); nucleus (ortholog) NW_004955454 2948137 2953955 - 102028821 AGCD01045040;AGCD01045041;GBDF01045105;GBDF01261759;XM_013520102 XP_013375556 MODEL 8717015 protein-coding LOC102025955 NXPE family member 3-like NW_004955573 723592 744642 + 102025955 AGCD01075003;AGCD01075004;GBCE01055284;XM_005413736 XP_005413793 MODEL 8972611 pseudo LOC102018206 protein slowmo homolog 2 pseudogene NW_004955428 4184563 4185357 + 102018206 AGCD01027669 MODEL 8756517 pseudo LOC102023648 WD40 repeat-containing protein SMU1 pseudogene NW_004955448 11800512 11802298 - 102023648 AGCD01041533 MODEL 8753053 pseudo LOC102015222 actin-related protein 3 pseudogene NW_004955427 2758614 2760152 + 102015222 AGCD01026904 MODEL 8789953 protein-coding L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 ENCODES a protein that exhibits histone binding (ortholog); histone H4K20me1 reader activity (ortholog); histone H4K20me2 reader activity (ortholog); INVOLVED IN chromatin organization (ortholog); ectoderm development (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); medulloblastoma (ortholog); FOUND IN nucleus (ortholog) NW_004955413 26831065 26847638 + 102016367 AGCD01014482;GBDF01122961;XM_005379342;XM_013511353 XP_005379399;XP_013366807 MODEL 8743019 pseudo LOC102016977 mimitin, mitochondrial pseudogene NW_004955406 8091333 8093909 - 102016977 AGCD01005791 MODEL 8871473 protein-coding Taf1c TATA-box binding protein associated factor, RNA polymerase I subunit C ENCODES a protein that exhibits RNA polymerase I core promoter sequence-specific DNA binding (ortholog); RNA polymerase I general transcription initiation factor activity (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 11 (ortholog); persistent fetal circulation syndrome (ortholog); FOUND IN fibrillar center (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955564 121988 132347 + 102019118 AGCD01074187;GBDF01193645;XM_005413220;XM_005413222;XM_005413223;XM_013509199;XM_013509201;XM_013509202 XP_005413277;XP_005413279;XP_005413280;XP_013364653;XP_013364655;XP_013364656 MODEL 8929755 pseudo LOC102024979 small nuclear ribonucleoprotein Sm D3 pseudogene NW_004955408 24834866 24861231 + 102024979 AGCD01008625;AGCD01008626 MODEL 8810114 protein-coding LOC102023653 keratin-associated protein 10-9-like NW_004955728 26021 27031 - 102023653 AGCD01078208;XM_005415077 XP_005415134 MODEL 9030847 protein-coding Scrt2 scratch family transcriptional repressor 2 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of neuron migration (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 1 (ortholog); Neurodevelopmental Disorders (ortholog); Polyglucosan Body Myopathy 1 with or without Immunodeficiency (ortholog); FOUND IN nucleus (ortholog) NW_004955597 504160 515609 - 102027133 AGCD01076558;AGCD01076559;XM_013510024 XP_013365478 MODEL 9044062 protein-coding Bhlhe23 basic helix-loop-helix family member e23 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of retinal cell programmed cell death (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); post-embryonic eye morphogenesis (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog) NW_004955528 1094234 1094674 + 102019428 AGCD01069552;GBBH01169029;XM_005409997 XP_005410054 MODEL 9033097 ncrna LOC102012219 uncharacterized LOC102012219 NW_004955495 5440402 5443188 - 102012219 AGCD01062007;GBDF01145786;XR_001231364 MODEL 8998308 ncrna LOC102023654 uncharacterized LOC102023654 NW_004955403 33468833 33477961 - 102023654 AGCD01002454;GBDJ01132301;XR_259220 MODEL 9013553 protein-coding Taf1d TATA-box binding protein associated factor, RNA polymerase I subunit D ENCODES a protein that exhibits identical protein binding (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); intellectual disability (ortholog); skin disease (ortholog); FOUND IN centriolar satellite (ortholog); cytosol (ortholog); mitotic spindle (ortholog) NW_004955414 799124 806242 + 102020555 AGCD01014748;GBDF01189890;GBDF01189898;XM_005379694 XP_005379751 MODEL 8733503 ncrna LOC102005792 uncharacterized LOC102005792 NW_004955414 5124870 5149552 - 102005792 AGCD01014888;XR_260153 MODEL 8966488 ncrna LOC102007245 uncharacterized LOC102007245 NW_004955495 6585034 6603591 - 102007245 AGCD01062085;GBDF01168574;XR_001231373;XR_264166 MODEL 8924925 pseudo LOC102008732 cytochrome b-c1 complex subunit 7-like NW_004955484 9493540 9493755 - 102008732 AGCD01058418 MODEL 8849276 protein-coding LOC102020380 olfactory receptor 12-like NW_004955542 1157297 1158244 - 102020380 AGCD01071490;XM_005411172 XP_005411229 MODEL 10351448 pseudo LOC106149990 cytokine receptor common subunit gamma pseudogene NW_004955460 13238976 13239916 + 106149990 AGCD01048676 MODEL 8711893 protein-coding Spats2l spermatogenesis associated serine rich 2 like ASSOCIATED WITH atrial fibrillation (ortholog); COVID-19 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955403 930622 1085906 - 102007171 AGCD01001712;AGCD01001713;AGCD01001714;AGCD01001715;GBCC01017701;XM_005373252;XM_005373253 XP_005373309;XP_005373310 MODEL 8940065 ncrna LOC102005793 uncharacterized LOC102005793 NW_004955470 11386077 11391036 - 102005793 AGCD01052887;GBDF01224584;XR_001237001;XR_263503 MODEL 8770681 ncrna LOC102022546 uncharacterized LOC102022546 NW_004955552 1838636 1865550 - 102022546 AGCD01072789;AGCD01072790;AGCD01072791;GBDI01143786;XR_001232278;XR_264926 MODEL 9028489 pseudo LOC102025964 condensin-2 complex subunit G2 pseudogene NW_004955450 6008349 6010451 - 102025964 AGCD01042517 MODEL 9060433 protein-coding Gpr180 G protein-coupled receptor 180 INVOLVED IN fat cell differentiation (ortholog); gene expression (ortholog); generation of precursor metabolites and energy (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Congenital Microcoria (ortholog); holoprosencephaly 5 (ortholog) NW_004955404 15250532 15275381 - 102027262 AGCD01003538;AGCD01003539;AGCD01003540;GBDK01027959;XM_005374110;XM_013516272 XP_005374167;XP_013371726 MODEL 8884861 ncrna LOC102018207 uncharacterized LOC102018207 NW_004955508 4313935 4333410 - 102018207 AGCD01065865;AGCD01065866;GBDJ01266761;XR_001231653 MODEL 8791802 ncrna LOC102009902 uncharacterized LOC102009902 NW_004956152 10489 11424 - 102009902 AGCD01079147;GBBH01228485;XR_265206 MODEL 8754255 protein-coding LOC102016980 basic leucine zipper and W2 domain-containing protein 1-like NW_004955458 9535717 9538477 - 102016980 AGCD01047647;GBDF01021802;XM_005397430 XP_005397487 MODEL 8720125 protein-coding Sh2d4a SH2 domain containing 4A ENCODES a protein that exhibits phosphatase binding (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hereditary spastic paraplegia 53 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955403 43111804 43170344 + 102020738 AGCD01002767;GBDK01136635;GBDK01136639;XM_005373614;XM_005373615 XP_005373671;XP_005373672 MODEL 8763529 protein-coding Slamf8 SLAM family member 8 ENCODES a protein that exhibits identical protein binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN B-1 B cell lineage commitment (ortholog); cellular response to xenobiotic stimulus (ortholog); defense response to bacterium (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); inflammatory bowel disease (ortholog) NW_004955468 11623092 11632566 + 102008521 AGCD01052136;GBBH01203155;XM_005400176 XP_005400233 MODEL 39133616 snrna U4 U4 spliceosomal RNA 8821643 pseudo LOC102024984 ribose-phosphate pyrophosphokinase 1 pseudogene NW_004955462 1274356 1275325 + 102024984 AGCD01049108 MODEL 8981215 ncrna LOC102023957 uncharacterized LOC102023957 NW_004955441 10691744 10696801 + 102023957 AGCD01037094;GBDF01160066;XR_001235304;XR_262067 MODEL 8717799 protein-coding Spc24 SPC24 component of NDC80 kinetochore complex INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog); FOUND IN kinetochore (ortholog); Ndc80 complex (ortholog); nucleolus (ortholog) NW_004955774 5456 9810 - 102008681 AGCD01078321;GBDF01226288;XM_005415107 XP_005415164 MODEL 8913232 protein-coding Vezf1 vascular endothelial zinc finger 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN angiogenesis (ortholog); endothelial cell development (ortholog); positive regulation of endothelial cell differentiation (ortholog); ASSOCIATED WITH Dilated Cardiomyopathy 1OO (ortholog); hereditary breast ovarian cancer syndrome (ortholog); intellectual disability (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955451 5014310 5031080 + 102005208 AGCD01043160;GBDI01001083;XM_005394042;XM_005394043 XP_005394099;XP_005394100 MODEL 8769838 protein-coding Gpr182 G protein-coupled receptor 182 ENCODES a protein that exhibits adrenomedullin receptor activity (ortholog); INVOLVED IN response to hypoxia (ortholog); ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); hepatocellular carcinoma (ortholog) NW_004955458 4749966 4754314 + 102018161 AGCD01047438;GBBH01222017;XM_005397336 XP_005397393 MODEL 39133617 snrna U4 U4 spliceosomal RNA 126903070 mirna MIR365A microRNA 365a 8893338 protein-coding Tmprss7 transmembrane serine protease 7 ENCODES a protein that exhibits serine-type peptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN plasma membrane (ortholog) NW_004955427 12447058 12483454 + 102024822 AGCD01027214;AGCD01027215;GBDF01184266;XM_005386381 XP_005386438 MODEL 8820496 pseudo LOC102015223 lupus La protein pseudogene NW_004955428 13211453 13212912 + 102015223 AGCD01027944 MODEL 8832472 protein-coding Xcl1 X-C motif chemokine ligand 1 ENCODES a protein that exhibits chemokine activity (ortholog); chemokine receptor binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); cell-cell signaling (ortholog); cellular response to interleukin-4 (ortholog); ASSOCIATED WITH anti-basement membrane glomerulonephritis (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN extracellular space (ortholog) NW_004955462 8594416 8598101 - 102017550 AGCD01049322;GBDJ01337507;XM_005398206 XP_005398263 MODEL 8821776 ncrna LOC102006121 uncharacterized LOC102006121 NW_004955470 11481867 11487499 + 102006121 AGCD01052889;XR_263505 MODEL 8774139 protein-coding Znf365 zinc finger protein 365 INVOLVED IN cerebellar molecular layer morphogenesis (ortholog); dendrite arborization (ortholog); dendritic spine morphogenesis (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955425 15652373 15675255 + 102021148 AGCD01025591;GBCQ01130964;GBDK01230455;XM_013514865 XP_013370319 MODEL 8802878 protein-coding LOC102008750 rho GTPase-activating protein 21-like NW_004955503 2090544 2097475 + 102008750 AGCD01064595;AGCD01064596;XM_013505847 XP_013361301 MODEL 39133698 mirna MIR365B microRNA 365b 9014342 ncrna LOC102015224 uncharacterized LOC102015224 NW_004955429 14387394 14393082 + 102015224 AGCD01028781;GBBH01042323;XR_261331 MODEL 8987956 ncrna LOC102025965 uncharacterized LOC102025965 NW_004955613 264675 272999 + 102025965 AGCD01077206;XR_001232578;XR_265171 MODEL 39133654 mirna MIR367 microRNA 367 9010348 ncrna LOC102008756 uncharacterized LOC102008756 NW_004955429 17376692 17378662 + 102008756 AGCD01028854;GBDF01303361;XR_001234496 MODEL 8869995 protein-coding Deup1 deuterosome assembly protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN de novo centriole assembly involved in multi-ciliated epithelial cell differentiation (ortholog); multi-ciliated epithelial cell differentiation (ortholog); ASSOCIATED WITH glioblastoma (ortholog); intellectual disability (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN deuterosome (ortholog) NW_004955414 1062968 1126698 - 102025452 AGCD01014757;GBBH01011302;GBCE01162883;XM_005379707;XM_013512047;XM_013512048;XM_013512049;XM_013512050;XM_013512051;XM_013512052 XP_005379764;XP_013367501;XP_013367502;XP_013367503;XP_013367504;XP_013367505;XP_013367506 MODEL 8758411 protein-coding Bhlhe40 basic helix-loop-helix family member e40 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); entrainment of circadian clock by photoperiod (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH advanced sleep phase syndrome (ortholog); bipolar disorder (ortholog); COVID-19 (ortholog); FOUND IN nuclear body (ortholog); nucleus (ortholog) NW_004955421 8463337 8468877 - 102018503 AGCD01021814;GBBH01119101;XM_005383740 XP_005383797 MODEL 8973552 pseudo LOC102024579 heterogeneous nuclear ribonucleoprotein H2-like NW_004955493 2976417 2978113 + 102024579 AGCD01060974 MODEL 8915775 pseudo LOC102024987 death domain-containing protein CRADD pseudogene NW_004955412 24914226 24923051 - 102024987 AGCD01013130;AGCD01013131 MODEL 8889427 pseudo LOC102028702 uncharacterized LOC102028702 NW_004955449 14301840 14308583 - 102028702 AGCD01042164 MODEL 8822420 pseudo LOC102007568 calcyclin-binding protein pseudogene NW_004955495 2910765 2911344 - 102007568 AGCD01061810 MODEL 8936058 protein-coding LOC102023959 olfactory receptor 11G2-like NW_004955550 721097 722059 + 102023959 AGCD01072516;XM_005412137 XP_005412194 MODEL 8907949 protein-coding LOC102023656 neuroblast differentiation-associated protein AHNAK-like NW_004956544 18 3824 + 102023656 AGCD01079770;AGCD01079771;GBCB01004226;GBDJ01017228;XM_013510230 XP_013365684 MODEL 8908066 protein-coding Vezt vezatin, adherens junctions transmembrane protein INVOLVED IN cell-cell adhesion (ortholog); chordate embryonic development (ortholog); synapse maturation (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); nucleoplasm (ortholog) NW_004955405 31801946 31869588 + 102028055 AGCD01005305;AGCD01005306;AGCD01005307;AGCD01005308;AGCD01005309;AGCD01005310;GBBH01119686;GBBH01119690;XM_013518452;XM_013518455;XM_013518460;XM_013518466 XP_013373906;XP_013373909;XP_013373914;XP_013373920 MODEL 8704083 ncrna LOC102020382 uncharacterized LOC102020382 NW_004955439 14686866 14703870 + 102020382 AGCD01035985;GBBH01173721;XR_261991 MODEL 39133619 snrna U4 U4 spliceosomal RNA 8837927 pseudo LOC102002985 nucleophosmin pseudogene NW_004955451 90063 90680 - 102002985 AGCD01042917 MODEL 8817190 pseudo LOC102006123 short/branched chain specific acyl-CoA dehydrogenase, mitochondrial pseudogene NW_004955415 14660369 14661840 - 102006123 AGCD01016304 MODEL 8932356 protein-coding Sct secretin ENCODES a protein that exhibits digestive hormone activity (ortholog); G protein-coupled receptor binding (ortholog); hormone activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); dentate gyrus development (ortholog); diet induced thermogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Beckwith-Wiedemann syndrome (ortholog); Chanarin-Dorfman syndrome (ortholog); FOUND IN extracellular space (ortholog) NW_004955476 11433857 11434662 + 102011984 AGCD01055458;GBDF01151931;XM_005401907 XP_005401964 MODEL 8707642 protein-coding LOC102028705 olfactory receptor 4F3/4F16/4F29-like NW_004955614 117232 118170 + 102028705 AGCD01077227;XM_005414974 XP_005415031 MODEL 8863078 protein-coding Znf366 zinc finger protein 366 ENCODES a protein that exhibits nuclear estrogen receptor binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of intracellular estrogen receptor signaling pathway (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); response to estrogen (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); COVID-19 (ortholog); DiGeorge syndrome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955575 1223834 1289668 - 102005528 AGCD01075235;GBCQ01006004;XM_005413939;XM_013509611 XP_005413996;XP_013365065 MODEL 9047655 ncrna LOC102016981 uncharacterized LOC102016981 NW_004955409 1446743 1451647 - 102016981 AGCD01009176;GBCQ01031376;XR_001232631;XR_001232632;XR_259743 MODEL 9035016 protein-coding Vgf VGF nerve growth factor inducible ENCODES a protein that exhibits neuropeptide hormone activity (ortholog); INVOLVED IN generation of precursor metabolites and energy (ortholog); glucose homeostasis (ortholog); insulin secretion (ortholog); ASSOCIATED WITH gastric ulcer (ortholog); Hyperphagia (ortholog); obesity (ortholog); FOUND IN cytoplasmic vesicle (ortholog); extracellular space (ortholog); glutamatergic synapse (ortholog) NW_004955456 16119073 16126968 + 102026187 AGCD01046690;GBDF01304628;XM_005396865;XM_005396866;XM_005396867;XR_001236369 XP_005396922;XP_005396923;XP_005396924 MODEL 39133004 snrna U6 U6 spliceosomal RNA 8910998 protein-coding Klhdc9 kelch domain containing 9 ENCODES a protein that exhibits cyclin binding (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955468 12866631 12868380 + 102026414 AGCD01052190;GBDI01224918;XM_005400237 XP_005400294 MODEL 9057425 pseudo LOC102021234 olfactory receptor 52B4-like NW_004955414 20036051 20036980 - 102021234 AGCD01015352 MODEL 8796878 ncrna LOC102013440 uncharacterized LOC102013440 NW_004955514 2930944 2934018 - 102013440 AGCD01067090;GBDF01225338;XR_264504 MODEL 8788416 ncrna LOC102012223 uncharacterized LOC102012223 NW_004955506 891734 899069 - 102012223 AGCD01065239;AGCD01065240;GBBH01030954;XR_264313 MODEL 8911930 pseudo LOC102008757 60S acidic ribosomal protein P0 pseudogene NW_004955429 2174980 2180342 + 102008757 AGCD01028416 MODEL 39131341 protein-coding VGLL1 vestigial like family member 1 9057048 protein-coding Gpr183 G protein-coupled receptor 183 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); oxysterol binding (ortholog); INVOLVED IN adaptive immune response (ortholog); cell chemotaxis (ortholog); dendritic cell chemotaxis (ortholog); ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly (ortholog); FOUND IN nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955404 11264954 11277531 + 102012722 AGCD01003417;GBDI01385036;XM_005374064 XP_005374121 MODEL 8761309 protein-coding LOC102009124 uncharacterized LOC102009124 NW_004955447 15117933 15159860 - 102009124 AGCD01041033;AGCD01041034;AGCD01041035;AGCD01041036;AGCD01041037;GBDF01196985;XM_013518482 XP_013373936 MODEL 8944100 protein-coding LOC102016982 olfactory receptor 6C6-like NW_004955458 2500770 2506296 + 102016982 AGCD01047234;AGCD01047235;XM_013520798 XP_013376252 MODEL 10293046 protein-coding LOC106149993 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955460 9935365 9938039 - 106149993 AGCD01048564;XM_013521114 XP_013376568 MODEL 8957596 ncrna LOC102022927 uncharacterized LOC102022927 NW_004955420 19860806 19866060 + 102022927 AGCD01021068;XR_260729 MODEL 8713690 protein-coding LOC102024990 T-cell surface glycoprotein CD1e, membrane-associated-like NW_004955468 10236378 10239755 + 102024990 AGCD01052075;GBDI01361288;XM_013522341 XP_013377795 MODEL 9002245 ncrna LOC102007578 uncharacterized LOC102007578 NW_004955430 1701824 1706200 - 102007578 AGCD01029131;AGCD01029132;GBDF01156088;XR_001234556 MODEL 9014005 protein-coding Xg Xg glycoprotein (Xg blood group) ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN plasma membrane (ortholog) NW_004955499 1654037 1684150 + 102010921 AGCD01063377;AGCD01063378;AGCD01063379;GBDI01371761;XM_013505593;XM_013505594;XM_013505596;XM_013505597 XP_013361047;XP_013361048;XP_013361050;XP_013361051 MODEL 8774510 pseudo LOC102009903 probable U3 small nucleolar RNA-associated protein 11 pseudogene NW_004957626 626 1246 + 102009903 AGCD01081022 MODEL 8846677 protein-coding LOC102020385 olfactory receptor 4K15-like NW_004955550 392606 393649 - 102020385 AGCD01072498;XM_005412129 XP_005412186 MODEL 8957872 protein-coding LOC102007579 olfactory receptor 5B3-like NW_004955511 3369163 3370107 - 102007579 AGCD01066459;XM_005408264 XP_005408321 MODEL 10330901 protein-coding LOC106149150 60S ribosomal protein L34-like NW_004955438 1369565 1370354 - 106149150 AGCD01034980;XM_013517161 XP_013372615 MODEL 9032463 protein-coding Iapp islet amyloid polypeptide ENCODES a protein that exhibits hormone activity (ortholog); identical protein binding (ortholog); lipid binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); amylin receptor 1 signaling pathway (ortholog); amylin receptor 2 signaling pathway (ortholog); ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); gastric ulcer (ortholog); type 1 diabetes mellitus (ortholog); FOUND IN extracellular space (ortholog); inclusion body (ortholog) NW_004955413 16834940 16841071 - 102016040 AGCD01014117;XM_013511653 XP_013367107 MODEL 8767551 pseudo LOC102028706 olfactory receptor 2M2-like NW_004955630 22390 23311 - 102028706 AGCD01077520 MODEL 8804450 protein-coding LOC102019456 cytochrome c oxidase assembly protein COX11, mitochondrial INVOLVED IN ATP biosynthetic process (ortholog); intracellular monoatomic cation homeostasis (ortholog); negative regulation of glucokinase activity (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); mitochondrial complex IV deficiency nuclear type 23 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); protein-containing complex (ortholog) NW_004955451 7635704 7642724 + 102019456 AGCD01043243;GBDF01193101;XM_005394089 XP_005394146 MODEL 8725640 pseudo LOC102017874 eukaryotic translation initiation factor 4E type 2 pseudogene NW_004955481 6307199 6311302 - 102017874 AGCD01057023 MODEL 10348626 ncrna LOC106149151 uncharacterized LOC106149151 NW_004955438 20721704 20723986 - 106149151 AGCD01035521;GBDF01208759;XR_001235131 MODEL 8971129 ncrna LOC102021236 uncharacterized LOC102021236 NW_004955474 3181086 3181714 + 102021236 AGCD01054325;GBDF01160031;XR_263593 MODEL 8826879 protein-coding Znf367 zinc finger protein 367 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH castration-resistant prostate carcinoma (ortholog); Colorectal Neoplasms (ortholog); intellectual disability (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955422 23516950 23535882 + 102024249 AGCD01023192;AGCD01023193;AGCD01023194;GBCE01183165;GBDF01123081;XM_013514307 XP_013369761 MODEL 9013157 protein-coding Dexi Dexi homolog ASSOCIATED WITH Charcot-Marie-Tooth disease type 1C (ortholog); Landau-Kleffner syndrome (ortholog); MHC class II deficiency (ortholog) NW_004955442 7585954 7599413 + 102005514 AGCD01037625;GBDF01049155;XM_005391177;XM_005391178;XM_013518003 XP_005391234;XP_005391235;XP_013373457 MODEL 9066457 protein-coding Bhlhe41 basic helix-loop-helix family member e41 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH esophageal cancer (ortholog); Familial Natural Short Sleep 1 (ortholog); lung adenocarcinoma (ortholog) NW_004955413 21100021 21103358 - 102004268 AGCD01014246;GBCB01005694;GBCQ01007548;XM_013511397 XP_013366851 MODEL 8873994 ncrna LOC102022552 uncharacterized LOC102022552 NW_004955402 19749867 19763274 - 102022552 AGCD01000567;GBDF01262712;XR_259059 MODEL 10126988 ncrna LOC106149152 uncharacterized LOC106149152 NW_004955438 8881648 8884348 + 106149152 AGCD01035163;GBCE01164442;XR_001235132 MODEL 8976483 protein-coding Nek2 NIMA related kinase 2 ENCODES a protein that exhibits protein kinase activity (ortholog); protein phosphatase binding (ortholog); INVOLVED IN blastocyst development (ortholog); centrosome separation (ortholog); chromosome segregation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); fundus dystrophy (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955406 5553661 5563648 + 102024976 AGCD01005731;GBDK01356788;XM_005374754 XP_005374811 MODEL 8720593 protein-coding Ppp1r18 protein phosphatase 1 regulatory subunit 18 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); megacolon (ortholog) NW_004955583 673634 681439 - 102018043 AGCD01075848;AGCD01075849;AGCD01075850;GBDI01067824;GBDK01075378;XM_005414315 XP_005414372 MODEL 8961014 protein-coding LOC102002991 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955406 23014463 23015572 + 102002991 AGCD01006162;XM_005375051 XP_005375108 MODEL 39133620 snrna U4 U4 spliceosomal RNA 8910827 protein-coding LOC102022929 solute carrier family 2, facilitated glucose transporter member 7 NW_004955486 4208997 4225613 + 102022929 AGCD01059057;GBDF01122157;XM_013504142 XP_013359596 MODEL 8795133 pseudo LOC102024991 40S ribosomal protein S2 pseudogene NW_004955414 9213604 9214527 + 102024991 AGCD01015012;XR_260164 MODEL 405822138 mirna MIR369 microRNA 369 39132372 snrna U6 U6 spliceosomal RNA 8811702 protein-coding LOC102025966 nucleoside diphosphate kinase A NW_004955451 10737976 10744261 - 102025966 AGCD01043330;GBDF01082596;GBDF01082598;XM_013519278 XP_013374732 MODEL 39133006 snrna U6 U6 spliceosomal RNA 8726919 ncrna LOC102020390 uncharacterized LOC102020390 NW_004955445 12888527 12928600 + 102020390 AGCD01039764;AGCD01039765;GBDF01222119;XR_262332 MODEL 8775375 protein-coding Eral1 Era like 12S mitochondrial rRNA chaperone 1 ENCODES a protein that exhibits ribosomal small subunit binding (ortholog); rRNA binding (ortholog); INVOLVED IN ribosomal small subunit assembly (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Hearing Loss (ortholog); Perrault syndrome (ortholog); FOUND IN cytosol (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955481 4315139 4320983 - 102019803 AGCD01056933;AGCD01056934;GBCE01115661;XM_005402709;XM_013503383 XP_005402766;XP_013358837 MODEL 8855260 pseudo LOC102007580 protein kinase C iota type pseudogene NW_004955430 14241459 14243053 - 102007580 AGCD01029564 MODEL 8703235 protein-coding Sall1 spalt like transcription factor 1 ENCODES a protein that exhibits beta-catenin binding (ortholog); chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN adrenal gland development (ortholog); branching involved in ureteric bud morphogenesis (ortholog); central nervous system neuron differentiation (ortholog); ASSOCIATED WITH Blau syndrome (ortholog); CAKUT (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN chromocenter (ortholog); cytoplasm (ortholog); heterochromatin (ortholog) NW_004955433 9146074 9161171 - 102019424 AGCD01031610;GBDI01327095;XM_005388281 XP_005388338 MODEL 8744271 protein-coding Tmprss9 transmembrane serine protease 9 ENCODES a protein that exhibits serine-type peptidase activity (ortholog); INVOLVED IN plasminogen activation (ortholog); proteolysis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Developmental Disabilities (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955495 5782817 5800988 - 102013187 AGCD01062029;AGCD01062030;AGCD01062031;AGCD01062032;AGCD01062033;GBCB01055890;GBCE01074655;XM_013505213 XP_013360667 MODEL 8982726 ncrna LOC102025967 uncharacterized LOC102025967 NW_004955915 4732 10513 - 102025967 AGCD01078662;GBDF01188258;XR_265196 MODEL 8920840 protein-coding LOC102009127 extracellular matrix protein 2 NW_004955580 238638 245468 + 102009127 AGCD01075592;AGCD01075593;GBDI01378283;XM_005414221 XP_005414278 MODEL 8785103 protein-coding Vgll1 vestigial like family member 1 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Christianson syndrome (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955489 8569891 8586770 - 102012765 AGCD01060020;GBDK01252448;XM_005404588;XM_013504460;XM_013504461 XP_005404645;XP_013359914;XP_013359915 MODEL 8799819 pseudo LOC102007581 glutamate dehydrogenase 1, mitochondrial-like NW_004955433 562648 564548 - 102007581 AGCD01031327 MODEL 8815230 protein-coding Gpr19 G protein-coupled receptor 19 ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); multiple endocrine neoplasia type 4 (ortholog); FOUND IN cilium (ortholog); neuron projection (ortholog) NW_004955413 9551156 9596279 - 102018072 AGCD01013907;AGCD01013908;GBDK01215176;XM_005378968;XM_005378969;XM_005378970;XM_013511277;XM_013511278 XP_005379025;XP_005379026;XP_005379027;XP_013366731;XP_013366732 MODEL 39131511 protein-coding ZNF382 zinc finger protein 382 8862260 protein-coding Erap1 endoplasmic reticulum aminopeptidase 1 ENCODES a protein that exhibits aminopeptidase activity (ortholog); endopeptidase activity (ortholog); interleukin-6 receptor binding (ortholog); INVOLVED IN membrane protein ectodomain proteolysis (ortholog); positive regulation of angiogenesis (ortholog); protein catabolic process (ortholog); ASSOCIATED WITH ankylosing spondylitis (ortholog); Behcet's disease (ortholog); cervix carcinoma (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum lumen (ortholog); extracellular region (ortholog) NW_004955418 15827560 15859720 + 102010260 AGCD01019112;AGCD01019113;GBCB01073859;GBCQ01099077;XM_013513048 XP_013368502 MODEL 8968540 protein-coding Sh2d4b SH2 domain containing 4B NW_004955510 506117 602140 + 102028881 AGCD01066151;AGCD01066152;AGCD01066153;AGCD01066154;AGCD01066155;AGCD01066156;AGCD01066157;GBCE01122178;XM_013506308 XP_013361762 MODEL 10216565 ncrna LOC106149153 uncharacterized LOC106149153 NW_004955438 908563 917077 + 106149153 AGCD01034965;GBDJ01365005;XR_001235133 MODEL 8878534 ncrna LOC102007252 uncharacterized LOC102007252 NW_004955427 4321562 4338950 + 102007252 AGCD01026962;GBDF01219849;XR_001234341;XR_001234342;XR_261230 MODEL 8896713 protein-coding Vgll2 vestigial like family member 2 ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); skeletal muscle tissue development (ortholog); ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955436 510478 514511 + 102022118 AGCD01033546;AGCD01033547;GBCE01108543;GBCE01108544;XM_013516574 XP_013372028 MODEL 39133621 snrna U4 U4 spliceosomal RNA 9061988 ncrna LOC102002993 uncharacterized LOC102002993 NW_004955407 12761327 12805870 - 102002993 AGCD01007138;AGCD01007139;GBDF01086288;XR_001230993 MODEL 8793078 ncrna LOC102008759 uncharacterized LOC102008759 NW_004955432 20992358 20999001 - 102008759 AGCD01031212;AGCD01031213;GBDF01076071;XR_261539 MODEL 8775370 ncrna LOC102019457 uncharacterized LOC102019457 NW_004955676 10316 15752 - 102019457 AGCD01077974;AGCD01077975;GBCE01027582;XR_265182 MODEL 39132373 snrna U6 U6 spliceosomal RNA 9061194 pseudo LOC102028707 AN1-type zinc finger protein 6 pseudogene NW_004955747 13383 14415 - 102028707 AGCD01078257;XM_005415087;XM_005415088;XM_005415089 MODEL 8906219 protein-coding Vgll3 vestigial like family member 3 NW_004955407 6247557 6293133 + 102003622 AGCD01006948;GBCC01019394;XM_013503684;XM_013503688 XP_013359138;XP_013359142 MODEL 8857374 protein-coding LOC102002994 keratin-associated protein 13-1-like NW_004955407 29780142 29780702 - 102002994 AGCD01007614;XM_005375629 XP_005375686 MODEL 8966762 protein-coding Sall2 spalt like transcription factor 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); protein-containing complex binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN eye development (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); coloboma (ortholog); cone-rod dystrophy 13 (ortholog) NW_004955550 2236129 2250829 - 102014613 AGCD01072615;AGCD01072616;GBDF01045984;XM_005412122 XP_005412179 MODEL 9039910 protein-coding LOC102016986 translation initiation factor IF-2-like NW_004955460 3852910 3854963 + 102016986 AGCD01048422;GBDF01249079;XM_005397961 XP_005398018 MODEL 8824295 protein-coding Dffa DNA fragmentation factor subunit alpha ENCODES a protein that exhibits deoxyribonuclease inhibitor activity (ortholog); protein domain specific binding (ortholog); protein folding chaperone (ortholog); INVOLVED IN chaperone-mediated protein folding (ortholog); negative regulation of apoptotic DNA fragmentation (ortholog); negative regulation of deoxyribonuclease activity (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); immunodeficiency 14 (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955486 3273712 3274510 + 102020676 AGCD01059020;XM_013504141 XP_013359595 MODEL 8793966 pseudo LOC102008760 ATP-dependent RNA helicase DDX50-like NW_004955519 1840874 1843190 - 102008760 AGCD01067909 MODEL 8816438 pseudo LOC102006124 motile sperm domain-containing protein 1 pseudogene NW_004955476 50263 52111 + 102006124 AGCD01055190 MODEL 8801279 protein-coding Slamf9 SLAM family member 9 INVOLVED IN defense response to bacterium (ortholog); plasmacytoid dendritic cell chemotaxis (ortholog); plasmacytoid dendritic cell differentiation (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); Experimental Liver Cirrhosis (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cell surface (ortholog) NW_004955468 11745694 11771376 - 102012304 AGCD01052137;AGCD01052138;AGCD01052139;GBDJ01323839;XM_013522438 XP_013377892 MODEL 8914694 protein-coding Tmsb10 thymosin beta 10 ASSOCIATED WITH allergic contact dermatitis (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955424 2471845 2472515 - 102008124 AGCD01024283;GBCC01033088;GBCQ01011061;XM_005385446 XP_005385503 MODEL 9009179 protein-coding Sall3 spalt like transcription factor 3 INVOLVED IN forelimb morphogenesis (ortholog); hindlimb morphogenesis (ortholog); negative regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH Burkitt lymphoma (ortholog); Burn-McKeown syndrome (ortholog); chromosome 18q deletion syndrome (ortholog) NW_004955402 62157988 62163977 + 102022445 AGCD01001636;GBCQ01019586;XM_005373104 XP_005373161 MODEL 8776401 protein-coding Vgll4 vestigial like family member 4 INVOLVED IN negative regulation of cardiac muscle cell proliferation (ortholog); negative regulation of cell growth (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN nucleus (ortholog) NW_004955429 14301509 14413163 - 102015427 AGCD01028778;AGCD01028779;AGCD01028780;AGCD01028781;AGCD01028782;AGCD01028783;GBDJ01002166;XM_005387008;XM_005387009;XM_005387010 XP_005387065;XP_005387066;XP_005387067 MODEL 8758606 protein-coding LOC102024582 olfactory receptor-like protein OLF3 NW_004955494 69060 69994 - 102024582 AGCD01061352;GBDF01269797;XM_013504914 XP_013360368 MODEL 8705432 protein-coding LOC102022930 calmodulin-4-like NW_004955421 22194729 22195647 - 102022930 AGCD01022128;GBCC01008059;XM_005383839 XP_005383896 MODEL 8939432 ncrna LOC102007257 uncharacterized LOC102007257 NW_004955510 4095118 4095706 - 102007257 AGCD01066254;GBDF01078004;XR_264407 MODEL 10258627 ncrna LOC106149154 uncharacterized LOC106149154 NW_004955438 971984 985423 + 106149154 AGCD01034966;GBDI01340708;XR_001235137 MODEL 39133007 snrna U6 U6 spliceosomal RNA 8972003 protein-coding Loxl3 lysyl oxidase like 3 ENCODES a protein that exhibits fibronectin binding (ortholog); protein-lysine 6-oxidase activity (ortholog); INVOLVED IN epithelial to mesenchymal transition (ortholog); fibronectin fibril organization (ortholog); inflammatory response (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 8 (ortholog); autistic disorder (ortholog); congenital disorder of glycosylation type IIb (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); extracellular space (ortholog) NW_004955424 11236415 11255801 + 102023930 AGCD01024559;GBDJ01390337;XM_005385492;XM_013514649;XM_013514650 XP_005385549;XP_013370103;XP_013370104 MODEL 9057252 protein-coding Sall4 spalt like transcription factor 4 INVOLVED IN embryonic limb morphogenesis (ortholog); heart development (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Congenital Limb Deformities (ortholog); Craniofacial Abnormalities (ortholog); Duane retraction syndrome (ortholog); FOUND IN heterochromatin (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955445 6824797 6841141 + 102017823 AGCD01039521;AGCD01039522;GBDF01028383;XM_005392290 XP_005392347 MODEL 10141896 ncrna LOC106146890 uncharacterized LOC106146890 NW_004955500 5812048 5815409 - 106146890 AGCD01063851;AGCD01063852;XR_001231512 MODEL 8904759 pseudo LOC102022931 endophilin-A3-like NW_004955489 7338830 7340001 - 102022931 AGCD01059982 MODEL 8870672 ncrna LOC102022555 uncharacterized LOC102022555 NW_004955450 3762810 3767772 + 102022555 AGCD01042444;GBDF01250880;XR_001235838 MODEL 8818388 protein-coding LOC102024584 NUT family member 2G NW_004955422 23875419 23883131 + 102024584 AGCD01023210;GBDF01010838;XM_013513990;XM_013513991 XP_013369444;XP_013369445 MODEL 39132374 snrna U6 U6 spliceosomal RNA 8764777 pseudo LOC102028710 nuclease-sensitive element-binding protein 1 pseudogene NW_004955451 1615225 1621531 + 102028710 AGCD01042974 MODEL 9041622 protein-coding Taf2 TATA-box binding protein associated factor 2 ENCODES a protein that exhibits transcription cis-regulatory region binding (ortholog); INVOLVED IN G2/M transition of mitotic cell cycle (ortholog); mRNA transcription by RNA polymerase II (ortholog); positive regulation of transcription initiation by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autosomal recessive intellectual developmental disorder 40 (ortholog); genetic disease (ortholog); hereditary multiple exostoses (ortholog); FOUND IN nucleus (ortholog); transcription factor TFIID complex (ortholog); transcription factor TFTC complex (ortholog) NW_004955417 25457615 25515923 - 102008103 AGCD01018482;AGCD01018483;AGCD01018484;AGCD01018485;GBBH01033252;GBDK01191649;XM_005381913 XP_005381970 MODEL 8765696 pseudo LOC102009912 KATNB1-like protein 1 pseudogene NW_004955406 13799840 13800569 + 102009912 AGCD01005954 MODEL 8798348 protein-coding LOC102009128 zinc finger protein 304 NW_004955584 189872 203610 + 102009128 AGCD01075926;GBDF01154035;XM_005414360 XP_005414417 MODEL 9054203 ncrna LOC102008766 uncharacterized LOC102008766 NW_004955435 5849029 5853706 - 102008766 AGCD01032901;AGCD01032902;GBDF01188936;XR_261666 MODEL 8783146 protein-coding Eras ES cell expressed Ras ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ortholog) NW_004955543 381756 383093 + 102026258 AGCD01071579;XM_005415247 XP_005415304 MODEL 8779211 ncrna LOC102012226 uncharacterized LOC102012226 NW_004955511 1865704 1875638 + 102012226 AGCD01066381;AGCD01066382;GBDF01188738;XR_264414 MODEL 8964156 protein-coding Ppp1r1a protein phosphatase 1 regulatory inhibitor subunit 1A ASSOCIATED WITH Cardiac Arrhythmias (ortholog); cardiomyopathy (ortholog); congestive heart failure (ortholog); FOUND IN extracellular space (ortholog) NW_004955458 1819366 1823864 - 102013478 AGCD01047205;GBCQ01008716;GBDI01013591;XM_013520994 XP_013376448 MODEL 9005129 protein-coding LOC102024993 cytochrome c oxidase subunit 5B, mitochondrial INVOLVED IN response to peptide hormone (ortholog); response to thyroid hormone (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); hypertension (ortholog); Myocardial Ischemia (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955470 4321555 4323449 + 102024993 AGCD01052729;GBDF01006869;XM_005400689 XP_005400746 MODEL 8936013 protein-coding Sh2d5 SH2 domain containing 5 ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); congenital disorder of glycosylation Ir (ortholog); hyperprolinemia type 2 (ortholog); FOUND IN postsynaptic density (ortholog) NW_004955452 1240621 1252088 - 102022453 AGCD01043836;AGCD01043837;GBDF01145516;XM_005394691;XM_013519747;XM_013519748;XM_013519750;XM_013519751;XM_013519752;XM_013519753 XP_005394748;XP_013375201;XP_013375202;XP_013375204;XP_013375205;XP_013375206;XP_013375207 MODEL 8928631 protein-coding LOC102009913 keratin-associated protein 20-2-like NW_004955407 30225299 30225502 + 102009913 AGCD01007628;XM_005375649 XP_005375706 MODEL 9010572 pseudo LOC102021239 ras-related protein Rab-33B pseudogene NW_004955475 1677079 1677769 + 102021239 AGCD01054758 MODEL 10320450 pseudo LOC106149994 AN1-type zinc finger protein 6 pseudogene NW_004955460 14141310 14146714 - 106149994 AGCD01048740 MODEL 8730445 protein-coding LOC102024996 mas-related G-protein coupled receptor member X1-like NW_004955414 33615412 33616410 - 102024996 AGCD01015816;XM_005380537 XP_005380594 MODEL 8874633 protein-coding Tex10 testis expressed 10 ASSOCIATED WITH intellectual disability (ortholog); FOUND IN mitochondrion (ortholog); MLL1 complex (ortholog); nucleoplasm (ortholog) NW_004955419 25382222 25445492 + 102012760 AGCD01020382;AGCD01020383;AGCD01020384;AGCD01020385;GBDF01046141;XM_005382811;XM_005382812;XM_005382813;XM_005382814 XP_005382868;XP_005382869;XP_005382870;XP_005382871 MODEL 8730030 protein-coding Sh2d6 SH2 domain containing 6 NW_004955424 2040012 2047142 - 102003463 AGCD01024261;GBDI01143647;XM_013514583 XP_013370037 MODEL 8863310 ncrna LOC102015225 uncharacterized LOC102015225 NW_004955429 21526676 21528190 + 102015225 AGCD01029005;GBDF01223361;XR_261374 MODEL 8768755 protein-coding LOC102025968 cytochrome c oxidase assembly factor 3 homolog, mitochondrial INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); positive regulation of mitochondrial translation (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); mitochondrial complex IV deficiency nuclear type 1 (ortholog); mitochondrial complex IV deficiency nuclear type 14 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955451 16607495 16608732 - 102025968 AGCD01043696;GBDK01080832;XM_005394486 XP_005394543 MODEL 8927624 protein-coding Samd1 sterile alpha motif domain containing 1 ENCODES a protein that exhibits chromatin binding (ortholog); low-density lipoprotein particle binding (ortholog); INVOLVED IN foam cell differentiation (ortholog); lipoprotein lipid oxidation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN extracellular space (ortholog); nucleus (ortholog) NW_004955415 32789937 32791421 - 102016804 AGCD01016733;GBCB01057825;GBCQ01129414;XM_013512353 XP_013367807 MODEL 8835821 pseudo LOC102025011 U4/U6.U5 tri-snRNP-associated protein 1 pseudogene NW_004955484 7544223 7546550 + 102025011 AGCD01058337 MODEL 39132375 snrna U6 U6 spliceosomal RNA 9060210 protein-coding Gpr20 G protein-coupled receptor 20 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); FOUND IN plasma membrane (ortholog); receptor complex (ortholog) NW_004955454 379024 380100 - 102015370 AGCD01044958;XM_005395722 XP_005395779 MODEL 8924337 protein-coding Klhl1 kelch like family member 1 INVOLVED IN adult walking behavior (ortholog); cerebellar Purkinje cell layer development (ortholog); dendrite development (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); neuronal cell body (ortholog) NW_004955404 36304862 36696901 + 102029146 AGCD01004158;AGCD01004159;AGCD01004160;AGCD01004161;AGCD01004162;AGCD01004163;AGCD01004164;AGCD01004165;AGCD01004166;AGCD01004167;AGCD01004168;AGCD01004169;AGCD01004170;AGCD01004171;AGCD01004172;AGCD01004173;AGCD01004174;AGCD01004175;AGCD01004176;GBDF01141646;XM_005374194 XP_005374251 MODEL 9021863 protein-coding LOC102005795 fibrous sheath-interacting protein 2-like NW_004955473 4588318 4648716 + 102005795 AGCD01053953;AGCD01053954;GBDF01110725;XM_005401232;XM_013523062;XM_013523063 XP_005401289;XP_013378516;XP_013378517 MODEL 9037867 protein-coding LOC102023657 keratin-associated protein 9-3-like NW_004955451 15458308 15458960 - 102023657 AGCD01043609;XM_005394385 XP_005394442 MODEL 8960158 protein-coding Dffb DNA fragmentation factor subunit beta ENCODES a protein that exhibits disordered domain specific binding (ortholog); DNA binding (ortholog); DNA nuclease activity (ortholog); INVOLVED IN apoptotic chromosome condensation (ortholog); apoptotic DNA fragmentation (ortholog); DNA catabolic process (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Chromosome Breakage (ortholog); megacolon (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955486 7836013 7849875 - 102021247 AGCD01059138;GBDK01277050;XM_005404126;XM_005404127;XM_005404128;XM_005404129;XM_005404131;XM_013504195 XP_005404183;XP_005404184;XP_005404185;XP_005404186;XP_005404188;XP_013359649 MODEL 39133622 snrna U4 U4 spliceosomal RNA 8744412 protein-coding LOC102018211 WD repeat-containing protein 49-like NW_004955431 14732986 14816717 - 102018211 AGCD01030338;AGCD01030339;AGCD01030340;AGCD01030341;GBDF01022038;XM_013515901 XP_013371355 MODEL 39132377 snrna U6 U6 spliceosomal RNA 8850892 protein-coding Vhl von Hippel-Lindau tumor suppressor ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); enzyme binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN amyloid fibril formation (ortholog); angiogenesis (ortholog); blood vessel endothelial cell migration (ortholog); PARTICIPATES IN altered hypoxia inducible factor pathway; hypoxia inducible factor pathway; proteasome degradation pathway involving cullin-dependent ubiquitin ligases; ASSOCIATED WITH adenoma (ortholog); Atrioventricular Septal Defect 2 (ortholog); Au-Kline Syndrome (ortholog); FOUND IN cilium (ortholog); Cul2-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955561 1573525 1578295 + 102017717 AGCD01073856;GBBH01142085;XM_005413065 XP_005413122 MODEL 8931996 pseudo LOC102012227 DNA/RNA-binding protein KIN17 pseudogene NW_004955511 978926 980086 + 102012227 AGCD01066350 MODEL 8832505 protein-coding LOC102019458 disintegrin and metalloproteinase domain-containing protein 21-like NW_004955403 32154362 32157844 - 102019458 AGCD01002431;GBDK01304845;XM_005373526 XP_005373583 MODEL 39133624 snrna U4 U4 spliceosomal RNA 8883284 ncrna LOC102021241 uncharacterized LOC102021241 NW_004955418 6388627 6419369 - 102021241 AGCD01018875;GBDF01074556;XR_260540 MODEL 8940011 pseudo LOC102002996 mitochondrial fission factor-like NW_004955455 354378 355152 + 102002996 AGCD01045556 MODEL 8918766 protein-coding Spc25 SPC25 component of NDC80 kinetochore complex INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); chromosome segregation (ortholog); mitotic spindle organization (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN cytosol (ortholog); kinetochore (ortholog); Ndc80 complex (ortholog) NW_004955449 5533464 5556341 + 102004764 AGCD01041939;AGCD01041940;AGCD01041941;GBDJ01093547;XM_005393272;XM_005393273;XM_013518795 XP_005393329;XP_005393330;XP_013374249 MODEL 8972647 protein-coding Sctr secretin receptor ENCODES a protein that exhibits peptide binding (ortholog); peptide hormone binding (ortholog); secretin receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); diet induced thermogenesis (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH type 2 diabetes mellitus (ortholog); FOUND IN cytoplasmic microtubule (ortholog) NW_004955459 10192449 10270483 + 102020770 AGCD01048181;AGCD01048182;AGCD01048183;AGCD01048184;GBDF01222090;XM_005397666;XM_005397668;XM_005397669;XM_005397670;XM_005397671;XM_013521062;XM_013521063 XP_005397723;XP_005397725;XP_005397726;XP_005397727;XP_005397728;XP_013376516;XP_013376517 MODEL 8887013 pseudo LOC102006128 heterogeneous nuclear ribonucleoprotein A3 pseudogene NW_004955417 3954110 3955411 - 102006128 AGCD01017933 MODEL 8963481 protein-coding L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); methylation-dependent protein binding (ortholog); INVOLVED IN erythrocyte maturation (ortholog); granulocyte differentiation (ortholog); macrophage differentiation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); medulloblastoma (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955436 10900521 11014259 + 102016416 AGCD01033799;AGCD01033800;AGCD01033801;AGCD01033802;AGCD01033803;AGCD01033804;GBBH01036968;GBCB01076996;XM_013516682 XP_013372136 MODEL 39133625 snrna U4 U4 spliceosomal RNA 9061870 protein-coding LOC102024586 olfactory receptor 7E24-like NW_004955495 767666 768702 + 102024586 AGCD01061653;XM_013505093 XP_013360547 MODEL 8920226 pseudo LOC102003297 MICOS complex subunit MIC27 pseudogene NW_004955449 412796 415575 + 102003297 AGCD01041765 MODEL 8719858 protein-coding Vil1 villin 1 ENCODES a protein that exhibits actin filament binding (ortholog); calcium ion binding (ortholog); cysteine-type endopeptidase inhibitor activity involved in apoptotic process (ortholog); INVOLVED IN actin filament capping (ortholog); actin filament depolymerization (ortholog); actin filament polymerization (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); cholestasis (ortholog); FOUND IN actin filament bundle (ortholog); brush border (ortholog); filopodium (ortholog) NW_004955453 14935450 14961011 - 102010225 AGCD01044877;GBCQ01002955;XM_005395646 XP_005395703 MODEL 8765802 protein-coding Slbp stem-loop histone mRNA binding protein ENCODES a protein that exhibits histone pre-mRNA stem-loop binding (ortholog); identical protein binding (ortholog); mRNA binding (ortholog); INVOLVED IN cap-dependent translational initiation (ortholog); mRNA 3'-end processing by stem-loop binding and cleavage (ortholog); mRNA transport (ortholog); ASSOCIATED WITH cherubism (ortholog); coloboma (ortholog); optic atrophy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); histone mRNA stem-loop binding complex (ortholog) NW_004955514 954489 968670 - 102016626 AGCD01067028;GBDF01000480;XM_005408703;XM_013506819;XM_013506820;XM_013506821 XP_005408760;XP_013362273;XP_013362274;XP_013362275 MODEL 39133626 snrna U4 U4 spliceosomal RNA 10174673 pseudo LOC106149155 septin-10 pseudogene NW_004955438 18240087 18240393 - 106149155 AGCD01035467 MODEL 8959835 protein-coding Klhl10 kelch like family member 10 INVOLVED IN cell morphogenesis (ortholog); fertilization (ortholog); homeostasis of number of cells within a tissue (ortholog); ASSOCIATED WITH spermatogenic failure 11 (ortholog); spermatogenic failure 3 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955451 16042128 16047718 + 102007846 AGCD01043649;AGCD01043650;GBDF01006512;XM_005394421 XP_005394478 MODEL 8940178 ncrna LOC102009915 uncharacterized LOC102009915 NW_004955458 5401003 5402675 + 102009915 AGCD01047487;GBBH01073358;XR_262984 MODEL 9001004 ncrna LOC102018213 uncharacterized LOC102018213 NW_004955433 14380516 14385234 + 102018213 AGCD01031721;GBDF01051190;XR_261596 MODEL 9030658 ncrna LOC102016987 uncharacterized LOC102016987 NW_004955461 8584842 8588962 - 102016987 AGCD01048932;GBDF01261221;XR_263083 MODEL 9061217 protein-coding Xiap X-linked inhibitor of apoptosis ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (ortholog); identical protein binding (ortholog); protease binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); defense response to bacterium (ortholog); DNA damage response (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; intrinsic apoptotic pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955473 10823795 10878256 - 102029504 AGCD01054116;AGCD01054117;GBBH01094341;GBCE01183072;XM_013523059 XP_013378513 MODEL 8818183 protein-coding Tmsb15a thymosin beta 15A INVOLVED IN positive regulation of cell migration (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955548 84399 86594 - 102019439 AGCD01072314;AGCD01072315;GBDF01303731;XM_013508517 XP_013363971 MODEL 8722924 ncrna LOC102021242 uncharacterized LOC102021242 NW_004955419 7042095 7105331 - 102021242 AGCD01019869;AGCD01019870;AGCD01019871;AGCD01019872;AGCD01019873;GBDI01189022;XR_001233597;XR_260612 MODEL 405822152 mirna MIR370 microRNA 370 8894782 pseudo LOC102016995 nucleophosmin-like NW_004955412 26063437 26064400 - 102016995 AGCD01013183 MODEL 8709544 protein-coding LOC102022557 serine protease 55 NW_004955403 52130187 52140797 + 102022557 AGCD01003002;AGCD01003003;GBDF01031608;XM_005373804 XP_005373861 MODEL 8861262 pseudo LOC102003001 E3 SUMO-protein ligase PIAS2 pseudogene NW_004955409 16215943 16246882 + 102003001 AGCD01009715;AGCD01009716;AGCD01009717 MODEL 8744411 pseudo LOC102017875 high mobility group protein B1 pseudogene NW_004955418 4498538 4499208 + 102017875 AGCD01018825 MODEL 8756782 protein-coding Klhl11 kelch like family member 11 NW_004955451 16051145 16055975 - 102008683 AGCD01043650;GBCE01000063;GBDI01066966;XM_013519277 XP_013374731 MODEL 8712714 protein-coding Scube1 signal peptide, CUB domain and EGF like domain containing 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH Developmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities (ortholog); intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular space (ortholog) NW_004955413 28339212 28461626 - 102013711 AGCD01014556;AGCD01014557;GBDF01285768;XM_005379668 XP_005379725 MODEL 8966427 ncrna LOC102005799 uncharacterized LOC102005799 NW_004955476 1188807 1194269 + 102005799 AGCD01055201;GBDK01109467;XR_263617 MODEL 39133008 snrna U6 U6 spliceosomal RNA 8715794 protein-coding Slc10a1 solute carrier family 10 member 1 ENCODES a protein that exhibits bile acid transmembrane transporter activity (ortholog); bile acid:sodium symporter activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); cellular response to xenobiotic stimulus (ortholog); response to estrogen (ortholog); ASSOCIATED WITH alcoholic hepatitis (ortholog); Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); FOUND IN basolateral plasma membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955466 597081 609254 + 102026303 AGCD01050667;GBCB01029096;XM_005399028 XP_005399085 MODEL 8891047 pseudo LOC102026996 BTB/POZ domain-containing protein 10 pseudogene NW_004955425 23418331 23421778 - 102026996 AGCD01025845 MODEL 39133627 snrna U4 U4 spliceosomal RNA 8862071 pseudo LOC102005801 ewing's tumor-associated antigen 1 pseudogene NW_004955476 28845 38954 + 102005801 AGCD01055190 MODEL 8866705 protein-coding LOC102022932 TRPM8 channel-associated factor 3-like NW_004955491 118954 133578 - 102022932 AGCD01060322;XM_013504562 XP_013360016 MODEL 39133010 snrna U6 U6 spliceosomal RNA 8752602 protein-coding LOC102019464 uncharacterized LOC102019464 NW_004955405 40216488 40222185 + 102019464 AGCD01005508;GBDF01072121;XM_005374613;XM_013519025 XP_005374670;XP_013374479 MODEL 8912290 protein-coding LOC102023961 beta-microseminoprotein-like NW_004955556 282204 297278 + 102023961 AGCD01073170;GBDF01208784;XM_005412550;XM_005412551 XP_005412607;XP_005412608 MODEL 8840211 pseudo LOC102018214 retinal dehydrogenase 1-like NW_004955434 130312 183170 - 102018214 AGCD01031996;AGCD01031997;AGCD01031998;AGCD01031999;AGCD01032000 MODEL 8975744 protein-coding Upk1a uroplakin 1A INVOLVED IN epithelial cell differentiation (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN apical plasma membrane (ortholog); apical plasma membrane urothelial plaque (ortholog); cell surface (ortholog) NW_004955468 2868839 2878518 - 102024547 AGCD01051841;AGCD01051842;GBCQ01092960;XM_005399977;XM_013522337;XM_013522338 XP_005400034;XP_013377791;XP_013377792 MODEL 39133011 snrna U6 U6 spliceosomal RNA 8795795 ncrna LOC102019466 uncharacterized LOC102019466 NW_004955453 10002932 10006876 - 102019466 AGCD01044781;GBDF01278069;XR_001236152 MODEL 8927693 pseudo LOC102021245 rab proteins geranylgeranyltransferase component A 2-like NW_004955419 5165693 5166738 - 102021245 AGCD01019787 MODEL 8922685 pseudo LOC102023659 protein tyrosine phosphatase domain-containing protein 1-like NW_004955403 55090494 55091638 + 102023659 AGCD01003109 MODEL 151707892 mirna MIR374B microRNA 374b 8705218 pseudo LOC102018215 60S ribosomal protein L7 pseudogene NW_004955521 4288386 4289394 - 102018215 AGCD01068259 MODEL 9056100 protein-coding Klhl12 kelch like family member 12 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN COPII vesicle coating (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); neural crest cell development (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN centriolar satellite (ortholog); COPII vesicle coat (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog) NW_004955406 38903233 38931756 - 102003090 AGCD01006612;AGCD01006613;GBDJ01278123;XM_005375232;XM_005375233;XM_005375234 XP_005375289;XP_005375290;XP_005375291 MODEL 8844479 protein-coding Dgat1 diacylglycerol O-acyltransferase 1 ENCODES a protein that exhibits 2-acylglycerol O-acyltransferase activity (ortholog); acyltransferase activity (ortholog); diacylglycerol binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); fatty acid homeostasis (ortholog); glycerolipid metabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); cardiomyopathy (ortholog); chronic kidney disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); intracellular membrane-bounded organelle (ortholog); membrane (ortholog) NW_004955454 2933904 2944675 - 102029149 AGCD01045040;GBDK01293190;XM_005395868 XP_005395925 MODEL 10392029 protein-coding LOC106146891 uncharacterized LOC106146891 NW_004955501 2002958 2020596 - 106146891 AGCD01064067;AGCD01064068;GBDI01300452;XM_013505729 XP_013361183 MODEL 39132849 snrna U6 U6 spliceosomal RNA 9060829 pseudo LOC102015227 60S ribosomal protein L9 pseudogene NW_004955429 10292015 10297453 + 102015227 AGCD01028669 MODEL 8773625 ncrna LOC102019468 uncharacterized LOC102019468 NW_004955455 8871582 8873817 - 102019468 AGCD01045910;GBDF01190667;XR_262845;XR_262846 MODEL 8814051 ncrna LOC102028711 uncharacterized LOC102028711 NW_004955404 36058754 36092402 + 102028711 AGCD01004148;AGCD01004149;GBDF01039706;XR_259332 MODEL 10328646 protein-coding LOC106149156 uncharacterized LOC106149156 NW_004955404 50317816 50318324 - 106149156 AGCD01004529;GBDF01156111;XM_013517188 XP_013372642 MODEL 8875849 ncrna LOC102020392 uncharacterized LOC102020392 NW_004955447 1208190 1217812 + 102020392 AGCD01040499;AGCD01040500;GBDK01306325;XR_262403 MODEL 8940113 pseudo LOC102008769 E3 ubiquitin-protein ligase XIAP pseudogene NW_004955536 609566 611847 + 102008769 AGCD01070732 MODEL 39132851 snrna U6 U6 spliceosomal RNA 8955343 pseudo LOC102016996 40S ribosomal protein S27-like NW_004955466 4068480 4068730 + 102016996 AGCD01050818 MODEL 8725372 protein-coding Samd10 sterile alpha motif domain containing 10 ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog) NW_004955528 279481 284386 + 102010090 AGCD01069523;AGCD01069524;GBCE01142429;GBDK01284591;XM_013507483 XP_013362937 MODEL 10316752 protein-coding Tmsb4x thymosin beta 4 X-linked ENCODES a protein that exhibits actin monomer binding (ortholog); enzyme binding (ortholog); protein sequestering activity (ortholog); INVOLVED IN negative regulation of actin filament polymerization (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of hematopoietic stem cell differentiation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autistic disorder (ortholog); Joubert syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955544 266397 268447 - 106147335 AGCD01071699;AY462140;GBDK01012466;XM_013508189 AAR26539;Q6S9C5;XP_013363643 MODEL 39132852 snrna U6 U6 spliceosomal RNA 8955344 ncrna LOC102016997 uncharacterized LOC102016997 NW_004955412 30396042 30413978 - 102016997 AGCD01013298;GBDF01041083;XR_260032 MODEL 8809840 ncrna LOC102012234 uncharacterized LOC102012234 NW_004955433 7547240 7568531 + 102012234 AGCD01031573;GBDF01235477;XR_001234708;XR_001234709;XR_001234710 MODEL 9062314 protein-coding Upk1b uroplakin 1B INVOLVED IN epithelial cell differentiation (ortholog); response to bacterium (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); apical plasma membrane urothelial plaque (ortholog) NW_004955427 18929125 18959745 + 102014070 AGCD01027356;AGCD01027357;GBDJ01141233;XM_005386427;XM_005386428 XP_005386484;XP_005386485 MODEL 8841169 pseudo LOC102025970 UPF0587 protein C1orf123 pseudogene NW_004955404 33187380 33187862 + 102025970 AGCD01004058 MODEL 39133658 mirna MIR375 microRNA 375 8857878 protein-coding LOC102018217 ubiquitin-conjugating enzyme E2 D2-like NW_004955525 1483494 1484306 + 102018217 AGCD01069039;XM_005409723;XM_005409724;XM_005409725 XP_005409780;XP_005409781;XP_005409782 MODEL 8968364 ncrna LOC102019469 uncharacterized LOC102019469 NW_004955407 32676882 32682680 - 102019469 AGCD01007680;GBDI01275175;XR_001231132;XR_001231133;XR_001231134 MODEL 8823674 protein-coding Gpr21 G protein-coupled receptor 21 INVOLVED IN glucose homeostasis (ortholog); insulin receptor signaling pathway (ortholog); negative regulation of insulin receptor signaling pathway (ortholog) NW_004955419 4934587 4937370 - 102028417 AGCD01019777;XM_005382506 XP_005382563 MODEL 8936061 protein-coding Spcs1 signal peptidase complex subunit 1 ENCODES a protein that exhibits ribosome binding (ortholog); INVOLVED IN signal peptide processing (ortholog); viral protein processing (ortholog); virion assembly (ortholog); PARTICIPATES IN biotin metabolic pathway; biotinidase deficiency pathway; holocarboxylase synthetase deficiency pathway; ASSOCIATED WITH congenital disorder of glycosylation In (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); signal peptidase complex (ortholog) NW_004955430 2689927 2692119 + 102025148 AGCD01029176;GBDF01145772;XM_005387349;XM_005387350 XP_005387406;XP_005387407 MODEL 9064168 pseudo LOC102028717 poly(A) polymerase alpha-like NW_004955406 31808642 31981710 - 102028717 AGCD01006417;AGCD01006418;AGCD01006419;AGCD01006420;AGCD01006421;AGCD01006422;AGCD01006423;AGCD01006424;AGCD01006425;AGCD01006426 MODEL 8770722 protein-coding LOC102024589 hypoxanthine-guanine phosphoribosyltransferase-like NW_004955498 4154694 4155460 - 102024589 AGCD01062973;XM_005406405 XP_005406462 MODEL 9010633 pseudo LOC102023962 ubiquitin-conjugating enzyme E2 C pseudogene NW_004955443 7609576 7669059 + 102023962 AGCD01038289;AGCD01038290;AGCD01038291;AGCD01038292;AGCD01038293 MODEL 8720450 protein-coding Bhmt betaine--homocysteine S-methyltransferase ENCODES a protein that exhibits betaine-homocysteine S-methyltransferase activity (ortholog); identical protein binding (ortholog); methyltransferase activity (ortholog); INVOLVED IN 'de novo' L-methionine biosynthetic process (ortholog); amino-acid betaine metabolic process (ortholog); L-methionine salvage (ortholog); PARTICIPATES IN choline metabolic pathway; dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; ASSOCIATED WITH Alcoholic Liver Diseases (ortholog); cerebral infarction (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytosol (ortholog); extracellular exosome (ortholog); extracellular space (ortholog) NW_004955425 21992219 22009389 - 102013102 AGCD01025810;AGCD01025811;AGCD01025812;GBCQ01010786;XM_005386012 XP_005386069 MODEL 8818861 protein-coding Ppp1r1b protein phosphatase 1 regulatory inhibitor subunit 1B ENCODES a protein that exhibits D1 dopamine receptor binding (ortholog); D2 dopamine receptor binding (ortholog); D3 dopamine receptor binding (ortholog); INVOLVED IN behavioral response to cocaine (ortholog); cellular response to cocaine (ortholog); DNA-templated transcription (ortholog); PARTICIPATES IN dopamine signaling pathway; ASSOCIATED WITH bipolar disorder (ortholog); Brain Hypoxia-Ischemia (ortholog); brain infarction (ortholog); FOUND IN cytoplasm (ortholog); dendritic spine head (ortholog); dendritic spine neck (ortholog) NW_004955451 14378186 14394910 + 102020077 AGCD01043550;AGCD01043551;AGCD01043552;GBDI01001254;XM_013519237 XP_013374691 MODEL 8925037 pseudo LOC102019473 40S ribosomal protein S2 pseudogene NW_004955407 37229074 37229776 - 102019473 AGCD01007779 MODEL 10381713 pseudo LOC106149995 ubiquitin carboxyl-terminal hydrolase 42 pseudogene NW_004955460 9938049 9942676 - 106149995 AGCD01048564 MODEL 9039159 protein-coding LOC102017879 A-kinase anchor protein 2 NW_004955419 16940266 17406309 - 102017879 AGCD01020138;AGCD01020139;AGCD01020140;AGCD01020141;AGCD01020142;AGCD01020143;AGCD01020144;AGCD01020145;AGCD01020146;AGCD01020147;AGCD01020148;AGCD01020149;AGCD01020150;AGCD01020151;GBDI01328539;GBDK01021121;XM_005382747 XP_005382804 MODEL 8727280 protein-coding Loxl4 lysyl oxidase like 4 ENCODES a protein that exhibits protein-lysine 6-oxidase activity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); urinary bladder cancer (ortholog); FOUND IN extracellular region (ortholog); receptor complex (ortholog) NW_004955507 4229284 4260005 - 102004405 AGCD01065642;AGCD01065643;AGCD01065644;AGCD01065645;GBDI01328500;GBDK01396522;XM_013506211 XP_013361665 MODEL 8730120 protein-coding Nek3 NIMA related kinase 3 INVOLVED IN establishment of cell polarity (ortholog); neuron projection morphogenesis (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); hereditary breast ovarian cancer syndrome (ortholog); intellectual disability (ortholog) NW_004955431 5382992 5412206 - 102008339 AGCD01030025;AGCD01030026;AGCD01030027;AGCD01030028;GBBH01101340;GBDJ01007552;XM_005387620;XM_013515774;XM_013515775;XM_013515776;XM_013515777;XM_013515778;XM_013515779 XP_005387677;XP_013371228;XP_013371229;XP_013371230;XP_013371231;XP_013371232;XP_013371233 MODEL 8773330 protein-coding Scube2 signal peptide, CUB domain and EGF like domain containing 2 ENCODES a protein that exhibits hedgehog family protein binding (ortholog); INVOLVED IN chondrocyte differentiation involved in endochondral bone morphogenesis (ortholog); positive regulation of chondrocyte proliferation (ortholog); positive regulation of ossification (ortholog); ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); FOUND IN extracellular space (ortholog) NW_004955414 24751134 24818338 - 102025996 AGCD01015553;AGCD01015554;AGCD01015555;AGCD01015556;GBBH01011763;GBDK01358943;XM_013511992 XP_013367446 MODEL 39132854 snrna U6 U6 spliceosomal RNA 8856841 protein-coding Taf3 TATA-box binding protein associated factor 3 ENCODES a protein that exhibits histone H3K4me3 reader activity (ortholog); p53 binding (ortholog); transcription regulator inhibitor activity (ortholog); INVOLVED IN maintenance of protein location in nucleus (ortholog); mRNA transcription by RNA polymerase II (ortholog); negative regulation of DNA-binding transcription factor activity (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); FOUND IN male germ cell nucleus (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955421 24263395 24414472 + 102009954 AGCD01022209;AGCD01022210;AGCD01022211;AGCD01022212;GBCQ01153140;XM_005383879;XM_005383880;XM_013513725 XP_005383936;XP_005383937;XP_013369179 MODEL 8812028 pseudo LOC102012238 ras GTPase-activating protein-binding protein 2 pseudogene NW_004955526 2838596 2839845 + 102012238 AGCD01069322 MODEL 10144600 ncrna LOC106146892 uncharacterized LOC106146892 NW_004955501 1086499 1108094 + 106146892 AGCD01064045;GBBH01074946;XR_001231514;XR_001231515 MODEL 9016933 pseudo LOC102027000 ubiquitin carboxyl-terminal hydrolase isozyme L3 pseudogene NW_004955512 2236757 2237465 + 102027000 AGCD01066670;XR_264442 MODEL 9039450 pseudo LOC102005802 60S ribosomal protein L37 pseudogene NW_004955416 8201222 8202250 - 102005802 AGCD01017037;XR_260372 MODEL 8751648 pseudo LOC102006131 polypeptide N-acetylgalactosaminyltransferase 11 pseudogene NW_004955418 29489392 29494643 + 102006131 AGCD01019466;AGCD01019467 MODEL 8934962 protein-coding Xirp1 xin actin binding repeat containing 1 ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN actin filament organization (ortholog); cardiac muscle cell development (ortholog); myoblast differentiation involved in skeletal muscle regeneration (ortholog); ASSOCIATED WITH hypertrophic cardiomyopathy (ortholog); microcephaly (ortholog); Poisoning (ortholog); FOUND IN adherens junction (ortholog); fascia adherens (ortholog); focal adhesion (ortholog) NW_004955427 24778157 24787691 + 102024824 AGCD01027521;GBCB01007246;XM_005386558;XM_005386559;XM_005386560;XM_005386561 XP_005386615;XP_005386616;XP_005386617;XP_005386618 MODEL 8819018 protein-coding Dgat2 diacylglycerol O-acyltransferase 2 ENCODES a protein that exhibits 2-acylglycerol O-acyltransferase activity (ortholog); diacylglycerol O-acyltransferase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to oleic acid (ortholog); cholesterol homeostasis (ortholog); diacylglycerol biosynthetic process (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2A1 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955414 16059781 16089727 - 102022183 AGCD01015197;GBDF01054643;XM_005379877;XM_005379878 XP_005379934;XP_005379935 MODEL 8806784 protein-coding Klhl13 kelch like family member 13 ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); regulation of cytokinesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog) NW_004955534 1906783 2127266 + 102018975 AGCD01070513;AGCD01070514;AGCD01070515;AGCD01070516;AGCD01070517;AGCD01070518;AGCD01070519;AGCD01070520;AGCD01070521;AGCD01070522;AGCD01070523;AGCD01070524;AGCD01070525;AGCD01070526;GBDK01285469;XM_005410465;XM_005410466;XM_005410467;XM_005410469;XM_013507708 XP_005410522;XP_005410523;XP_005410524;XP_005410526;XP_013363162 MODEL 10223746 ncrna LOC106149157 uncharacterized LOC106149157 NW_004955404 10160409 10204540 - 106149157 AGCD01003376;GBDF01042219;XR_001235140;XR_001235142 MODEL 8731327 pseudo LOC102003005 cTAGE family member 5-like NW_004955463 249195 252486 + 102003005 AGCD01049479 MODEL 39132855 snrna U6 U6 spliceosomal RNA 8715819 ncrna LOC102027001 uncharacterized LOC102027001 NW_004955432 1618245 1628231 - 102027001 AGCD01030600;AGCD01030601;GBCB01009360;XR_261501;XR_261502 MODEL 8930008 protein-coding Vill villin like ASSOCIATED WITH Brugada syndrome (ortholog); visceral heterotaxy 4 (ortholog) NW_004955421 4837688 4856129 + 102010269 AGCD01021702;AGCD01021703;GBDK01135962;XM_005383713;XM_005383721;XM_005383722;XM_013513699;XM_013513701;XM_013513702;XM_013513703;XM_013513704;XM_013513705;XM_013513706;XM_013513707;XM_013513708 XP_005383770;XP_005383778;XP_005383779;XP_013369153;XP_013369155;XP_013369156;XP_013369157;XP_013369158;XP_013369159;XP_013369160;XP_013369161;XP_013369162 MODEL 8796085 ncrna LOC102008772 uncharacterized LOC102008772 NW_004955442 14332729 14334118 - 102008772 AGCD01037810;GBBH01025947;XR_001235407 MODEL 9005174 protein-coding Znf382 zinc finger protein 382 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog) NW_004955468 2278594 2299493 + 102028073 AGCD01051806;GBBH01120855;XM_013522317 XP_013377771 MODEL 8800091 protein-coding LOC102021246 arylacetamide deacetylase-like 4 NW_004955486 922340 931576 + 102021246 AGCD01058906;XM_005403940 XP_005403997 MODEL 8989048 protein-coding Spcs2 signal peptidase complex subunit 2 INVOLVED IN signal peptide processing (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); signal peptidase complex (ortholog) NW_004955414 16807986 16825013 - 102005249 AGCD01015225;GBDI01004293;XM_005379911 XP_005379968 MODEL 9002495 protein-coding Tmt1a thiol methyltransferase 1A ENCODES a protein that exhibits mRNA m(6)A methyltransferase activity (ortholog); RNA methyltransferase activity (ortholog); thiol S-methyltransferase activity (ortholog); INVOLVED IN lncRNA processing (ortholog); odontogenesis (ortholog); osteoblast differentiation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); endometriosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); lipid droplet (ortholog) NW_004955547 1356530 1365189 + 102019437 AGCD01072216;AGCD01072217;AGCD01072218;GBDF01045836;XM_013508460 XP_013363914 MODEL 39133628 snrna U4 U4 spliceosomal RNA 8788246 protein-coding Iars1 isoleucyl-tRNA synthetase 1 ENCODES a protein that exhibits GTPase binding (ortholog); isoleucine-tRNA ligase activity (ortholog); INVOLVED IN isoleucyl-tRNA aminoacylation (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); GROWTH RETARDATION, INTELLECTUAL DEVELOPMENTAL DISORDER, HYPOTONIA, AND HEPATOPATHY (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955515 5506064 5558075 + 102030461 AGCD01067359;AGCD01067360;AGCD01067361;GBDF01087321;GBDK01138860;XM_005408918 XP_005408975 MODEL 8861925 ncrna LOC102025014 uncharacterized LOC102025014 NW_004955420 13614295 13621411 - 102025014 AGCD01020925;XR_260713 MODEL 8944561 protein-coding Bicc1 BicC family RNA binding protein 1 INVOLVED IN determination of left/right symmetry (ortholog); heart development (ortholog); kidney development (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); autosomal recessive polycystic kidney disease (ortholog); CAKUT (ortholog) NW_004955425 12237611 12522321 + 102010385 AGCD01025504;AGCD01025505;AGCD01025506;AGCD01025507;AGCD01025508;AGCD01025509;AGCD01025510;AGCD01025511;GBCE01077752;XM_005385916;XM_013514878 XP_005385973;XP_013370332 MODEL 8933620 protein-coding L3mbtl4 L3MBTL histone methyl-lysine binding protein 4 ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); intellectual disability (ortholog); megacolon (ortholog) NW_004955402 4927453 5168415 + 102013780 AGCD01000129;AGCD01000130;GBDF01179172;XM_013518523 XP_013373977 MODEL 405822155 mirna MIR377 microRNA 377 8918126 protein-coding Lpar1 lysophosphatidic acid receptor 1 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); lysophosphatidic acid binding (ortholog); lysophosphatidic acid receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); bleb assembly (ortholog); cell chemotaxis (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; ASSOCIATED WITH acute myeloid leukemia (ortholog); Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cell surface (ortholog); dendritic shaft (ortholog); dendritic spine (ortholog) NW_004955419 16190109 16324702 + 102011447 AGCD01020107;AGCD01020108;AGCD01020109;AGCD01020110;GBDF01015037;XM_005382726;XM_005382727;XM_005382729;XM_013513299 XP_005382783;XP_005382784;XP_005382786;XP_013368753 MODEL 8981493 protein-coding Nek4 NIMA related kinase 4 ENCODES a protein that exhibits manganese ion binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN DNA damage response (ortholog); mitotic cell cycle (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH ciliopathy (ortholog); congenital disorder of glycosylation In (ortholog); FOUND IN ciliary basal body (ortholog); ciliary plasm (ortholog); ciliary rootlet (ortholog) NW_004955430 2695674 2733204 - 102003046 AGCD01029176;AGCD01029177;AGCD01029178;AGCD01029179;AGCD01029180;GBCQ01129640;XM_013515588;XM_013515589 XP_013371042;XP_013371043 MODEL 39133629 snrna U4 U4 spliceosomal RNA 39131318 protein-coding TMT1A thiol methyltransferase 1A 9053578 protein-coding LOC102018220 butyrophilin subfamily 1 member A1-like NW_004955437 999109 1050071 - 102018220 AGCD01034182;AGCD01034183;AGCD01034184;AGCD01034185;AGCD01034186;AGCD01034187;GBCQ01003449;XM_005389445 XP_005389502 MODEL 8753200 pseudo LOC102025017 BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like pseudogene NW_004955490 2193778 2194447 - 102025017 AGCD01060132 MODEL 8954281 ncrna LOC102005805 uncharacterized LOC102005805 NW_004955417 31526897 31527811 + 102005805 AGCD01018654;GBDI01226891;XR_260525 MODEL 39133630 snrna U4 U4 spliceosomal RNA 8729275 protein-coding LOC102023967 keratin-associated protein 10-1-like NW_004955728 17159 18126 + 102023967 AGCD01078208;XM_005415078 XP_005415135 MODEL 8955478 pseudo LOC102024591 dnaJ homolog subfamily C member 10 pseudogene NW_004955500 7129982 7156228 - 102024591 AGCD01063901;AGCD01063902 MODEL 9052000 pseudo LOC102009916 KATNB1-like protein 1 pseudogene NW_004955458 3895009 3896301 + 102009916 AGCD01047353 MODEL 8964247 pseudo LOC102018222 ribulose-phosphate 3-epimerase-like NW_004955537 2568245 2569307 - 102018222 AGCD01070931 MODEL 8863437 ncrna LOC102019478 uncharacterized LOC102019478 NW_004955409 23587939 23595263 - 102019478 AGCD01010068;GBDI01355144;XR_001232654 MODEL 8882226 protein-coding Klhl14 kelch like family member 14 ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN actin cytoskeleton (ortholog); aggresome (ortholog); cytosol (ortholog) NW_004955402 19841255 19932774 - 102022762 AGCD01000567;AGCD01000568;GBDJ01172004;XM_005372757;XM_005372758 XP_005372814;XP_005372815 MODEL 10274622 protein-coding LOC106149996 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955460 9943924 10051409 - 106149996 AGCD01048564;AGCD01048565;AGCD01048566;AGCD01048567;AGCD01048568;AGCD01048569;GBDF01277242;XM_013521137;XM_013521138 XP_013376591;XP_013376592 MODEL 39133631 snrna U4 U4 spliceosomal RNA 9061901 pseudo LOC102025974 60S ribosomal protein L7a pseudogene NW_004955453 596129 603760 + 102025974 AGCD01044596;XR_262760 MODEL 8923496 protein-coding LOC102018228 olfactory receptor 11G2-like NW_004955550 899553 900582 + 102018228 AGCD01072529;XM_005412040 XP_005412097 MODEL 8927610 protein-coding Spcs3 signal peptidase complex subunit 3 INVOLVED IN proteolysis (ortholog); signal peptide processing (ortholog); viral protein processing (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); signal peptidase complex (ortholog) NW_004955403 31451426 31461032 - 102016549 AGCD01002417;GBBH01064568;GBCQ01093575;XM_005373515 XP_005373572 MODEL 9047365 protein-coding LOC102007258 glycine N-phenylacetyltransferase-like NW_004955511 3686412 3716368 - 102007258 AGCD01066472;AGCD01066473;AGCD01066474;GBCQ01037301;XM_005408050;XM_005408051;XM_005408052;XM_005408054;XM_005408055;XM_013506345;XM_013506346 XP_005408107;XP_005408108;XP_005408109;XP_005408111;XP_005408112;XP_013361799;XP_013361800 MODEL 9027720 protein-coding Xirp2 xin actin binding repeat containing 2 ENCODES a protein that exhibits actin filament binding (ortholog); alpha-actinin binding (ortholog); INVOLVED IN cardiac muscle tissue morphogenesis (ortholog); cell-cell junction organization (ortholog); positive regulation of protein localization (ortholog); ASSOCIATED WITH blepharophimosis (ortholog); Congenital Heart Defects, Multiple Types, 4 (ortholog); depressive disorder (ortholog); FOUND IN cell-cell junction (ortholog); focal adhesion (ortholog); stress fiber (ortholog) NW_004955449 7054636 7131668 - 102008586 AGCD01041972;AGCD01041973;GBCB01003932;XM_013518803 XP_013374257 MODEL 10355908 ncrna LOC106149158 uncharacterized LOC106149158 NW_004955438 14524264 14531582 - 106149158 AGCD01035346;GBDF01220316;XR_001235141 MODEL 8827805 protein-coding LOC102003007 vomeronasal type-1 receptor 4-like NW_004955465 13056058 13056990 - 102003007 AGCD01050581;XM_005399004 XP_005399061 MODEL 8947196 protein-coding LOC102018232 prostatic spermine-binding protein-like NW_004955442 14575069 14588232 - 102018232 AGCD01037827;AGCD01037828;AGCD01037829;GBDF01305030;XM_005391408;XM_005391409;XM_013517784 XP_005391465;XP_005391466;XP_013373238 MODEL 8979767 protein-coding Sh2d7 SH2 domain containing 7 ASSOCIATED WITH autosomal recessive nonsyndromic deafness 48 (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955450 650339 660567 + 102007289 AGCD01042340;AGCD01042341;GBBH01112313;XM_013518895 XP_013374349 MODEL 8992646 protein-coding Tmt1b thiol methyltransferase 1B ENCODES a protein that exhibits S-adenosylmethionine-dependent methyltransferase activity (ortholog); thiol S-methyltransferase activity (ortholog); ASSOCIATED WITH congenital muscular dystrophy due to integrin alpha-7 deficiency (ortholog); ovarian carcinoma (ortholog) NW_004955458 3319840 3322777 + 102019571 AGCD01047293;AGCD01047294;GBDK01273978;XM_005397254 XP_005397311 MODEL 8765153 protein-coding Spdef SAM pointed domain containing ETS transcription factor ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell fate commitment (ortholog); epithelial cell fate commitment (ortholog); glandular epithelial cell development (ortholog); ASSOCIATED WITH ovarian cancer (ortholog); Ovarian Neoplasms (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN nucleus (ortholog) NW_004955437 2667499 2679940 - 102017812 AGCD01034284;GBDJ01272719;XM_005389528;XM_013517102 XP_005389585;XP_013372556 MODEL 8985675 protein-coding LOC102017882 nuclear receptor subfamily 1 group I member 3-like NW_004955489 1878193 1883606 - 102017882 AGCD01059853;GBCQ01063310;XM_005404517;XM_005404518;XM_005404519 XP_005404574;XP_005404575;XP_005404576 MODEL 8799967 ncrna LOC102016999 uncharacterized LOC102016999 NW_004955467 10266477 10280482 - 102016999 AGCD01051558;GBDF01286101;XR_001236863 MODEL 8878987 pseudo LOC102022933 coiled-coil domain-containing protein 152-like NW_004955492 4114005 4119150 - 102022933 AGCD01060709 MODEL 8707426 pseudo LOC102021248 nucleolar GTP-binding protein 1 pseudogene NW_004955420 8696925 8699253 + 102021248 AGCD01020731 MODEL 8927679 pseudo LOC102018233 heat shock cognate 71 kDa protein pseudogene NW_004955557 808259 809210 + 102018233 AGCD01073262 MODEL 8836229 protein-coding Xk X-linked Kx blood group antigen, Kell and VPS13A binding protein ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN intracellular calcium ion homeostasis (ortholog); intracellular magnesium ion homeostasis (ortholog); myelination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); disease of mental health (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955587 668871 725829 + 102011713 AGCD01076069;GBCB01097779;XM_005414450 XP_005414507 MODEL 9044235 ncrna LOC102003298 uncharacterized LOC102003298 NW_004955449 5422486 5428279 - 102003298 AGCD01041932;AGCD01041933;GBDF01075789;XR_262489 MODEL 8750242 ncrna LOC102007586 uncharacterized LOC102007586 NW_004955435 13055123 13064175 + 102007586 AGCD01033177;GBBH01079921;XR_261684 MODEL 8884349 protein-coding Iars2 isoleucyl-tRNA synthetase 2, mitochondrial ASSOCIATED WITH cataract (ortholog); CATARACTS, GROWTH HORMONE DEFICIENCY, SENSORY NEUROPATHY, SENSORINEURAL HEARING LOSS, AND SKELETAL DYSPLASIA (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN mitochondrion (ortholog) NW_004955520 3485816 3521035 - 102024840 AGCD01068103;AGCD01068104;AGCD01068105;GBBH01143287;GBDI01020406;XM_013507032 XP_013362486 MODEL 39133632 snrna U4 U4 spliceosomal RNA 8893266 ncrna LOC102021250 uncharacterized LOC102021250 NW_004955422 19299181 19314130 - 102021250 AGCD01022997;AGCD01022998;GBDJ01376834;XR_260898 MODEL 39132378 snrna U6 U6 spliceosomal RNA 9015446 protein-coding Bicd1 BICD cargo adaptor 1 ENCODES a protein that exhibits cytoskeletal anchor activity (ortholog); dynactin binding (ortholog); dynein complex binding (ortholog); INVOLVED IN microtubule anchoring at microtubule organizing center (ortholog); minus-end-directed organelle transport along microtubule (ortholog); negative regulation of phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); FOUND IN centrosome (ortholog); cytoplasmic microtubule (ortholog); cytoplasmic vesicle (ortholog) NW_004955505 3330933 3544752 - 102027765 AGCD01065020;AGCD01065021;AGCD01065022;AGCD01065023;AGCD01065024;AGCD01065025;AGCD01065026;AGCD01065027;AGCD01065028;AGCD01065029;AGCD01065030;GBBH01167340;GBDJ01318423;XM_005407175 XP_005407232 MODEL 8816057 protein-coding LOC102023660 keratin-associated protein 3-1-like NW_004955451 15422402 15422701 - 102023660 AGCD01043607;XM_005394619 XP_005394676 MODEL 8719040 protein-coding Gpr22 G protein-coupled receptor 22 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIi (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955410 11841813 11849441 + 102004576 AGCD01010835;XM_013510539;XM_013510540 XP_013365993;XP_013365994 MODEL 8841048 protein-coding Dgat2l6 diacylglycerol O-acyltransferase 2 like 6 ENCODES a protein that exhibits diacylglycerol O-acyltransferase activity (ortholog); INVOLVED IN monoacylglycerol biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955475 9708402 9733712 + 102020004 AGCD01055069;AGCD01055070;AGCD01055071;GBDJ01212951;XM_005401609 XP_005401666 MODEL 9013972 protein-coding LOC102007259 olfactory receptor 5B3-like NW_004955511 3322239 3323164 - 102007259 AGCD01066458;GBDF01075823;XM_013506402 XP_013361856 MODEL 8883377 protein-coding Vim vimentin ENCODES a protein that exhibits double-stranded RNA binding (ortholog); identical protein binding (ortholog); keratin filament binding (ortholog); INVOLVED IN astrocyte development (ortholog); Bergmann glial cell differentiation (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); PARTICIPATES IN cyclooxygenase mediated pathway of arachidonic acid metabolism; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); FOUND IN axon (ortholog); cell body (ortholog); cell leading edge (ortholog) NW_004955429 10708852 10716743 - 102027769 AGCD01028678;GBDF01046378;XM_005386962 XP_005387019 MODEL 8741062 pseudo LOC102015228 polypyrimidine tract-binding protein 1-like NW_004955431 9288464 9290138 - 102015228 AGCD01030171 MODEL 8892552 pseudo LOC102023661 TIP41-like protein NW_004955404 27433979 27434834 - 102023661 AGCD01003930 MODEL 8970452 protein-coding LOC102025027 phospholipid-transporting ATPase IB-like NW_004955497 5485035 5701431 - 102025027 AGCD01062595;AGCD01062596;AGCD01062597;AGCD01062598;AGCD01062599;AGCD01062600;AGCD01062601;AGCD01062602;AGCD01062603;AGCD01062604;AGCD01062605;AGCD01062606;AGCD01062607;AGCD01062608;AGCD01062609;AGCD01062610;GBDF01004671;XM_005406337;XM_005406338;XM_005406339;XM_005406340 XP_005406394;XP_005406395;XP_005406396;XP_005406397 MODEL 8721324 protein-coding Upk2 uroplakin 2 INVOLVED IN epithelial cell differentiation (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN apical plasma membrane (ortholog); apical plasma membrane urothelial plaque (ortholog) NW_004955412 20086991 20089062 + 102020642 AGCD01012992;GBDF01144032;XM_005378283;XM_005378284 XP_005378340;XP_005378341 MODEL 8789629 protein-coding Erbb2 erb-b2 receptor tyrosine kinase 2 ENCODES a protein that exhibits coreceptor activity (ortholog); ErbB-3 class receptor binding (ortholog); growth factor binding (ortholog); INVOLVED IN axon regeneration (ortholog); cell population proliferation (ortholog); cell surface receptor protein tyrosine kinase signaling pathway (ortholog); PARTICIPATES IN altered epidermal growth factor/neuregulin signaling pathway; endometrial cancer pathway; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); amblyopia (ortholog); Animal Disease Models (ortholog); FOUND IN cell projection; apical plasma membrane (ortholog); basal plasma membrane (ortholog) NW_004955451 14442816 14456009 + 102029927 AGCD01043554;GBDF01303586;XM_005394319 XP_005394376 MODEL 9056454 pseudo LOC102012243 ubiquitin-like protein FUBI pseudogene NW_004955538 2573003 2573441 + 102012243 AGCD01071128 MODEL 8778105 pseudo LOC102028718 leucine-rich repeat-containing protein 28 pseudogene NW_004955407 10964744 10965860 - 102028718 AGCD01007092 MODEL 8870744 ncrna LOC102025030 uncharacterized LOC102025030 NW_004955426 18622111 18639343 - 102025030 AGCD01026526;GBDF01085119;XR_261202 MODEL 8736201 protein-coding Upk3a uroplakin 3A INVOLVED IN cell morphogenesis (ortholog); epithelial cell differentiation (ortholog); kidney development (ortholog); ASSOCIATED WITH CAKUT1 (ortholog); intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); apical plasma membrane urothelial plaque (ortholog) NW_004955413 29673160 29679604 + 102030407 AGCD01014591;GBCQ01041936;XM_005379483;XM_005379484;XM_005379485 XP_005379540;XP_005379541;XP_005379542 MODEL 39132857 snrna U6 U6 spliceosomal RNA 8904038 protein-coding Tex101 testis expressed 101 INVOLVED IN basophil activation (ortholog); binding of sperm to zona pellucida (ortholog); fertilization (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN acrosomal membrane (ortholog); acrosomal vesicle (ortholog); cell surface (ortholog) NW_004955555 1136499 1140802 + 102014398 AGCD01073058;GBDF01052755;XM_005412435;XM_013508734 XP_005412492;XP_013364188 MODEL 8940114 protein-coding LOC102008777 atherin-like NW_004955558 851314 852320 + 102008777 AGCD01073394;GBCE01172818;GBDF01225096;XM_013508881 XP_013364335 MODEL 8774842 protein-coding LOC102027002 lanosterol 14-alpha demethylase ENCODES a protein that exhibits heme binding (ortholog); sterol 14-demethylase activity (ortholog); INVOLVED IN cholesterol biosynthetic process via 24,25-dihydrolanosterol (ortholog); negative regulation of amyloid-beta clearance (ortholog); negative regulation of protein catabolic process (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH Antley-Bixler syndrome (ortholog); cardiomyopathy (ortholog); cataract (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955432 9092923 9112615 - 102027002 AGCD01030892;GBCQ01037189;XM_005388004 XP_005388061 MODEL 8922155 pseudo LOC102005812 G kinase-anchoring protein 1 pseudogene NW_004955488 1169951 1171056 + 102005812 AGCD01059491 MODEL 8884575 pseudo LOC102003008 DPY30 domain-containing protein 2 pseudogene NW_004955413 2319331 2319955 + 102003008 AGCD01013544 MODEL 8944278 protein-coding Tex11 testis expressed 11 INVOLVED IN apoptotic process (ortholog); chiasma assembly (ortholog); ectopic germ cell programmed cell death (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN central element (ortholog); chromosome (ortholog); condensed nuclear chromosome (ortholog) NW_004955475 10057708 10432087 - 102027742 AGCD01055082;AGCD01055083;AGCD01055084;AGCD01055085;AGCD01055086;AGCD01055087;AGCD01055088;AGCD01055089;AGCD01055090;AGCD01055091;AGCD01055092;AGCD01055093;AGCD01055094;AGCD01055095;XM_005401706 XP_005401763 MODEL 8874391 ncrna LOC102005816 uncharacterized LOC102005816 NW_004955423 3544871 3634123 + 102005816 AGCD01023515;AGCD01023516;GBDF01047727;XR_260951 MODEL 8875134 protein-coding LOC102027006 triadin-like NW_004955436 4927224 4963543 - 102027006 AGCD01033674;GBDF01153986;XM_013516583 XP_013372037 MODEL 9048710 pseudo LOC102017002 translocation protein SEC62-like NW_004955413 5481141 5488757 - 102017002 AGCD01013678 MODEL 8838313 pseudo LOC102015231 epithelial membrane protein 1 pseudogene NW_004955433 22945510 22945958 - 102015231 AGCD01031949 MODEL 10388035 ncrna LOC106146893 uncharacterized LOC106146893 NW_004955501 5779566 5790342 - 106146893 AGCD01064168;XR_001231516 MODEL 405822156 mirna MIR381 microRNA 381 8739247 protein-coding Vip vasoactive intestinal peptide ENCODES a protein that exhibits hormone activity (ortholog); neuropeptide hormone activity (ortholog); peptide hormone receptor binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); innate immune response (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); alcohol use disorder (ortholog); Animal Hepatitis (ortholog); FOUND IN neuron projection terminus; extracellular space (ortholog); neuronal cell body (ortholog) NW_004955439 9021923 9031783 - 102027015 AGCD01035824;XM_005390571 XP_005390628 MODEL 8766057 protein-coding LOC102025975 lymphocyte antigen 6F NW_004955454 1875022 1878705 + 102025975 AGCD01044991;GBDF01043166;XM_005395755 XP_005395812 MODEL 9002057 protein-coding LOC102027007 actin-like NW_004955529 788205 790170 - 102027007 AGCD01069657;XM_005410094 XP_005410151 MODEL 8821769 protein-coding LOC102005821 transcription elongation factor A protein-like 3 NW_004955503 8192530 8194504 + 102005821 AGCD01064812;GBDI01313611;XM_005406978 XP_005407035 MODEL 8837504 pseudo LOC102012245 eukaryotic translation initiation factor 5 pseudogene NW_004955542 1250369 1252115 - 102012245 AGCD01071498 MODEL 9037051 pseudo LOC102015234 myosin light chain 6B pseudogene NW_004955434 16032905 16034308 - 102015234 AGCD01032509 MODEL 8893797 protein-coding Nek5 NIMA related kinase 5 ENCODES a protein that exhibits protein kinase activity (ortholog); INVOLVED IN positive regulation of striated muscle cell differentiation (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN cilium (ortholog); sperm flagellum (ortholog) NW_004955431 5312243 5378998 - 102014273 AGCD01030019;AGCD01030020;AGCD01030021;AGCD01030022;AGCD01030023;AGCD01030024;AGCD01030025;GBCE01094226;XM_013515764;XM_013515765;XM_013515766;XM_013515767;XM_013515768;XM_013515769;XM_013515770;XM_013515771 XP_013371218;XP_013371219;XP_013371220;XP_013371221;XP_013371222;XP_013371223;XP_013371224;XP_013371225 MODEL 8786840 pseudo LOC102028722 ribosome maturation protein SBDS pseudogene NW_004955458 4408152 4408803 - 102028722 AGCD01047411 MODEL 8765030 protein-coding Iba57 iron-sulfur cluster assembly factor IBA57 PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 74 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955581 284488 289225 - 102013985 AGCD01075665;GBBH01185484;XM_005414235 XP_005414292 MODEL 8855798 protein-coding Slc10a2 solute carrier family 10 member 2 ENCODES a protein that exhibits bile acid:sodium symporter activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); response to bacterium (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); cognitive disorder (ortholog); Diabetes Complications (ortholog); FOUND IN apical plasma membrane (ortholog); microvillus (ortholog); proteasome complex (ortholog) NW_004955404 8122119 8137236 + 102027934 AGCD01003348;XM_005374019 XP_005374076 MODEL 8829132 protein-coding LOC102023971 keratin-associated protein 2-1-like NW_004955451 15488262 15489049 - 102023971 AGCD01043611;XM_005394386 XP_005394443 MODEL 8834502 protein-coding Upk3b uroplakin 3B INVOLVED IN negative regulation of D-glucose import (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); COVID-19 (ortholog) NW_004955456 15073833 15078635 + 102011506 AGCD01046662;GBDJ01084044;XM_005396821;XM_005396822;XM_005396823 XP_005396878;XP_005396879;XP_005396880 MODEL 10340989 protein-coding Gpr25 G protein-coupled receptor 25 ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog) NW_004955406 37065511 37066771 + 106150185 AGCD01006571;GBBH01145319;XM_013522068 XP_013377522 MODEL 9057954 protein-coding Taf4 TATA-box binding protein associated factor 4 ENCODES a protein that exhibits aryl hydrocarbon receptor binding (ortholog); core promoter sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN DNA-templated transcription (ortholog); DNA-templated transcription initiation (ortholog); mRNA transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 73 (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); male germ cell nucleus (ortholog) NW_004955528 1951952 2020592 + 102013646 AGCD01069580;GBBH01127372;GBCQ01129362;XM_013507495 XP_013362949 MODEL 9027470 protein-coding LOC102017883 zinc finger protein 75D NW_004955489 9388240 9400320 + 102017883 AGCD01060038;AGCD01060039;GBCE01139029;XM_005404607;XM_013504455 XP_005404664;XP_013359909 MODEL 8981707 protein-coding Dgcr2 DiGeorge syndrome critical region gene 2 INVOLVED IN cognition (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN membrane (ortholog) NW_004955442 18857222 18938552 + 102013222 AGCD01038022;AGCD01038023;AGCD01038024;GBDF01052698;XM_005391789;XM_005391790;XM_005391791;XM_005391792 XP_005391846;XP_005391847;XP_005391848;XP_005391849 MODEL 8929936 protein-coding LOC102008778 olfactory receptor 1361-like NW_004955442 14157622 14158563 - 102008778 AGCD01037803;XM_005391854 XP_005391911 MODEL 8827360 ncrna LOC102018234 uncharacterized LOC102018234 NW_004955443 19101620 19119702 - 102018234 AGCD01038619;GBDF01262552;XR_262213 MODEL 8982872 protein-coding Xkr4 XK related 4 ENCODES a protein that exhibits phospholipid scramblase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN phosphatidylserine exposure on apoptotic cell surface (ortholog); ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN plasma membrane (ortholog) NW_004955454 14311466 14704334 + 102006978 AGCD01045469;AGCD01045470;AGCD01045471;AGCD01045472;AGCD01045473;AGCD01045474;AGCD01045475;AGCD01045476;GBBH01053233;XM_005396125 XP_005396182 MODEL 8764869 protein-coding Upp1 uridine phosphorylase 1 ENCODES a protein that exhibits deoxyuridine phosphorylase activity (ortholog); identical protein binding (ortholog); thymidine phosphorylase activity (ortholog); INVOLVED IN cellular response to glucose starvation (ortholog); CMP catabolic process (ortholog); dCMP catabolic process (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); long QT syndrome (ortholog); middle cerebral artery infarction (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955456 5365912 5385336 - 102006315 AGCD01046327;GBCQ01176861;XM_005396627;XM_005396628;XM_013520562 XP_005396684;XP_005396685;XP_013376016 MODEL 8893681 ncrna LOC102007596 uncharacterized LOC102007596 NW_004955441 5524667 5614034 - 102007596 AGCD01036879;AGCD01036880;GBDF01251487;XR_262050 MODEL 10381365 protein-coding LOC106146894 uncharacterized LOC106146894 NW_004955501 7499077 7500862 - 106146894 AGCD01064215;AGCD01064216;GBDF01087566;GBDK01089523;XM_013505737 XP_013361191 MODEL 8953536 protein-coding LOC102009133 vomeronasal type-1 receptor 4-like NW_004955603 230078 230680 + 102009133 AGCD01076823;XM_005414842 XP_005414899 MODEL 8750726 pseudo LOC102021251 60S ribosomal protein L23a pseudogene NW_004955493 6861814 6862285 + 102021251 AGCD01061146 MODEL 8817606 ncrna LOC102027009 uncharacterized LOC102027009 NW_004955532 2058121 2065989 - 102027009 AGCD01070213;AGCD01070214;XR_001232025;XR_001232026 MODEL 8771278 protein-coding Sh3bgr SH3 domain binding glutamate rich protein ASSOCIATED WITH autistic disorder (ortholog) NW_004955407 38225827 38265792 + 102026294 AGCD01007799;AGCD01007800;AGCD01007801;AGCD01007802;AGCD01007803;GBCQ01164597;XM_005375770;XM_005375771;XM_005375772 XP_005375827;XP_005375828;XP_005375829 MODEL 8940864 ncrna LOC102015235 uncharacterized LOC102015235 NW_004955435 10300244 10325935 - 102015235 AGCD01033084;GBDI01112304;XR_001234839;XR_261677 MODEL 9024072 protein-coding LOC102009925 olfactory receptor 8B12-like NW_004955412 25567776 25568708 - 102009925 AGCD01013160;XM_005378426 XP_005378483 MODEL 8957602 protein-coding LOC102024592 tubulin polymerization-promoting protein NW_004955504 341155 416050 - 102024592 AGCD01064817;AGCD01064818;AGCD01064819;GBBH01000645;XM_005407009;XM_005407010;XM_013505871;XM_013505872;XM_013505873;XM_013505874;XM_013505875;XM_013505876;XM_013505877;XM_013505878;XM_013505879;XM_013505880;XM_013505881;XM_013505882;XM_013505883;XM_013505884;XM_013505885;XM_013505886 XP_005407066;XP_005407067;XP_013361325;XP_013361326;XP_013361327;XP_013361328;XP_013361329;XP_013361330;XP_013361331;XP_013361332;XP_013361333;XP_013361334;XP_013361335;XP_013361336;XP_013361337;XP_013361338;XP_013361339;XP_013361340 MODEL 8776186 protein-coding LOC102007598 keratin, type II cuticular Hb5-like NW_004955547 2695857 2706205 + 102007598 AGCD01072294;GBDK01062119;XM_005411937 XP_005411994 MODEL 8986128 protein-coding Upp2 uridine phosphorylase 2 ENCODES a protein that exhibits deoxyuridine phosphorylase activity (ortholog); identical protein binding (ortholog); uridine phosphorylase activity (ortholog); INVOLVED IN CMP catabolic process (ortholog); dCMP catabolic process (ortholog); UMP catabolic process (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; mitochondrial neurogastrointestinal encephalopathy syndrome pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN cytosol (ortholog); type III intermediate filament (ortholog) NW_004955449 15355592 15405997 - 102011925 AGCD01042192;AGCD01042193;AGCD01042194;GBCQ01011318;XM_013518720;XM_013518721;XM_013518722;XM_013518723;XM_013518724;XM_013518725;XM_013518726;XM_013518727 XP_013374174;XP_013374175;XP_013374176;XP_013374177;XP_013374178;XP_013374179;XP_013374180;XP_013374181 MODEL 8891533 protein-coding LOC102013443 pancreatic alpha-amylase NW_004955435 8083712 8090769 - 102013443 AGCD01032994;GBDF01171554;XM_005388816;XM_005388817;XM_005388818 XP_005388873;XP_005388874;XP_005388875 MODEL 8720484 protein-coding Spdl1 spindle apparatus coiled-coil protein 1 ENCODES a protein that exhibits enzyme binding (ortholog); kinetochore binding (ortholog); INVOLVED IN cell migration (ortholog); establishment of mitotic spindle orientation (ortholog); mitotic metaphase chromosome alignment (ortholog); ASSOCIATED WITH immunodeficiency 40 (ortholog); Perinatal Death (ortholog); FOUND IN nucleus (ortholog); outer kinetochore (ortholog); spindle pole (ortholog) NW_004955408 22590474 22619168 + 102013477 AGCD01008578;GBDF01223309;XM_005376306;XM_005376307;XM_005376308 XP_005376363;XP_005376364;XP_005376365 MODEL 8823541 ncrna LOC102022935 uncharacterized LOC102022935 NW_004955422 25042486 25108196 + 102022935 AGCD01023240;AGCD01023241;AGCD01023242;AGCD01023243;AGCD01023244;AGCD01023245;GBDF01053000;XR_001233918;XR_001233919;XR_001233920;XR_001233921;XR_001233922;XR_001233923;XR_001233924 MODEL 10251936 protein-coding LOC106149997 basic proline-rich protein-like NW_004955460 10360557 10360799 + 106149997 AGCD01048580;GBBH01150818;XM_013521139 XP_013376593 MODEL 8940499 protein-coding Scube3 signal peptide, CUB domain and EGF like domain containing 3 ENCODES a protein that exhibits BMP binding (ortholog); BMP receptor binding (ortholog); identical protein binding (ortholog); INVOLVED IN positive regulation of BMP signaling pathway (ortholog); positive regulation of osteoblast differentiation (ortholog); positive regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH Dwarfism (ortholog); genetic disease (ortholog); prostate cancer (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955437 3178985 3213772 + 102022425 AGCD01034300;GBDI01201758;GBDJ01353348;XM_005389543;XM_005389544;XM_005389545 XP_005389600;XP_005389601;XP_005389602 MODEL 9035689 protein-coding LOC102023662 lysozyme C NW_004955405 9664119 9670523 + 102023662 AGCD01004787;GBBH01001416;XM_005374298 XP_005374355 MODEL 8897593 protein-coding Gpr26 G protein-coupled receptor 26 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH prostate cancer (ortholog) NW_004955477 1769585 1789838 + 102027405 AGCD01055509;AGCD01055510;XM_005401962 XP_005402019 MODEL 8805546 pseudo LOC102003299 epidermal growth factor receptor substrate 15 pseudogene NW_004955449 17953369 17956566 + 102003299 AGCD01042278 MODEL 39133633 snrna U4 U4 spliceosomal RNA 8872986 ncrna LOC102017004 uncharacterized LOC102017004 NW_004955472 5724741 5731569 - 102017004 AGCD01053583;GBDF01074006;XR_263552 MODEL 8793393 protein-coding Sh3bgrl SH3 domain binding glutamate rich protein like ENCODES a protein that exhibits protein-RNA adaptor activity (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN positive regulation of cytoplasmic translational initiation (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN cytosol (ortholog) NW_004955529 1159704 1223222 + 102019318 AGCD01069675;AGCD01069676;AGCD01069677;GBDJ01011359;XM_005410074 XP_005410131 MODEL 8731635 pseudo LOC102018237 high mobility group protein B1-like NW_004955445 10890882 10892048 - 102018237 AGCD01039680 MODEL 405822149 mirna MIR382 microRNA 382 39132379 snrna U6 U6 spliceosomal RNA 8866073 protein-coding Bicd2 BICD cargo adaptor 2 ENCODES a protein that exhibits dynactin binding (ortholog); dynein complex binding (ortholog); dynein light intermediate chain binding (ortholog); INVOLVED IN centrosome localization (ortholog); microtubule anchoring at microtubule organizing center (ortholog); microtubule-based movement (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); autism spectrum disorder (ortholog); autosomal dominant distal hereditary motor neuronopathy (ortholog); FOUND IN annulate lamellae (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955515 5060176 5105298 + 102025831 AGCD01067337;AGCD01067338;GBCE01133926;XM_005408901;XM_005408902 XP_005408958;XP_005408959 MODEL 8948003 pseudo LOC102007260 glutaredoxin-2, mitochondrial pseudogene NW_004955430 13298152 13298519 - 102007260 AGCD01029530 MODEL 8802022 pseudo LOC102005826 cyclin-dependent kinase 11B pseudogene NW_004955511 3584330 3587487 - 102005826 AGCD01066468 MODEL 39133634 snrna U4 U4 spliceosomal RNA 405822148 mirna MIR409 microRNA 409 8776857 ncrna LOC102003012 uncharacterized LOC102003012 NW_004955470 10615968 10634986 + 102003012 AGCD01052872;GBDF01190714;XR_263493 MODEL 8767165 protein-coding LOC102019480 myosin-7 NW_004955409 36905845 36928140 + 102019480 AGCD01010483;AGCD01010484;GBCB01040294;XM_005377179 XP_005377236 MODEL 9012651 protein-coding Klhl15 kelch like family member 15 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN negative regulation of double-strand break repair via homologous recombination (ortholog); nuclear protein quality control by the ubiquitin-proteasome system (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); non-syndromic X-linked intellectual disability 103 (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); nucleus (ortholog) NW_004955509 4377975 4439287 - 102016404 AGCD01066064;AGCD01066065;GBDF01177582;XM_005407838;XM_013506294 XP_005407895;XP_013361748 MODEL 8741198 protein-coding LOC102023973 keratin-associated protein 4-11-like NW_004955451 15452600 15453615 - 102023973 AGCD01043608;AGCD01043609;XM_013519125 XP_013374579 MODEL 405822145 mirna MIR410 microRNA 410 8743330 protein-coding Erbb3 erb-b2 receptor tyrosine kinase 3 ENCODES a protein that exhibits ErbB-3 class receptor binding (ortholog); growth factor binding (ortholog); identical protein binding (ortholog); INVOLVED IN axonogenesis (ortholog); cell surface receptor protein tyrosine kinase signaling pathway (ortholog); cellular response to insulin stimulus (ortholog); PARTICIPATES IN angiotensin II signaling pathway via AT2 receptor; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH amblyopia (ortholog); Breast Neoplasms (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN apical part of cell; apical plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955458 3683126 3701752 + 102028937 AGCD01047336;AGCD01047337;GBBH01093140;GBDJ01015857;XM_005397284 XP_005397341 MODEL 9006420 protein-coding Lpar2 lysophosphatidic acid receptor 2 ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); positive regulation of MAPK cascade (ortholog); positive regulation of Rho protein signal transduction (ortholog); FOUND IN cell surface (ortholog); endocytic vesicle (ortholog); glutamatergic synapse (ortholog) NW_004955524 2390354 2395436 + 102015142 AGCD01068814;AGCD01068815;AGCD01068816;GBCQ01014829;XM_005409641 XP_005409698 MODEL 8987448 protein-coding LOC102003013 olfactory receptor 2S2-like NW_004955472 324392 328281 - 102003013 AGCD01053328;XM_013522926 XP_013378380 MODEL 8875708 protein-coding Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); collagen fibril organization (ortholog); collagen metabolic process (ortholog); ASSOCIATED WITH ARC syndrome (ortholog); arthrogryposis, renal dysfunction, and cholestasis 1 (ortholog); arthrogryposis, renal dysfunction, and cholestasis 2 (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); endosome (ortholog) NW_004955438 1320862 1351344 - 102016518 AGCD01034980;GBDI01024301;XM_005390202 XP_005390259 MODEL 8880750 protein-coding Dgcr6l DiGeorge syndrome critical region gene 6 like ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog) NW_004955442 17810570 17815905 + 102020386 AGCD01037986;GBDF01004537;XM_005391720 XP_005391777 MODEL 41410901 mirna MIR412 microRNA 412 8803863 pseudo LOC102025976 zinc finger CCHC-type and RNA-binding motif-containing protein 1 pseudogene NW_004955406 34227276 34229189 - 102025976 AGCD01006498 MODEL 8765584 protein-coding Klhl17 kelch like family member 17 ENCODES a protein that exhibits actin filament binding (ortholog); molecular adaptor activity (ortholog); POZ domain binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); regulation protein catabolic process at postsynapse (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); immunodeficiency 16 (ortholog); FOUND IN actin cytoskeleton (ortholog); dendrite cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955486 9745162 9750874 - 102008950 AGCD01059198;GBDK01323002;XM_005404283;XM_013504206;XM_013504207;XM_013504208;XM_013504209;XM_013504210;XM_013504211 XP_005404340;XP_013359660;XP_013359661;XP_013359662;XP_013359663;XP_013359664;XP_013359665 MODEL 8703358 protein-coding LOC102025031 prostaglandin F synthase 1-like NW_004955429 664039 699169 + 102025031 AGCD01028369;AGCD01028370;AGCD01028371;AGCD01028372;AGCD01028373;GBDF01207576;XM_005386862;XM_005386863;XM_005386864 XP_005386919;XP_005386920;XP_005386921 MODEL 8990178 ncrna LOC102018240 uncharacterized LOC102018240 NW_004955447 18427382 18430221 + 102018240 AGCD01041172;GBDF01114538;XR_262446 MODEL 8787019 protein-coding Xkr5 XK related 5 ASSOCIATED WITH Recombinant Chromosome 8 Syndrome (ortholog); FOUND IN plasma membrane (ortholog) NW_004955403 53964767 53981549 + 102007726 AGCD01003082;AGCD01003083;GBBH01134536;XM_005373843;XM_005373845;XM_013514597;XM_013514598;XM_013514601 XP_005373900;XP_005373902;XP_013370051;XP_013370052;XP_013370055 MODEL 8932948 protein-coding LOC102025978 sodium/glucose cotransporter 1-like NW_004955455 7427164 7489654 + 102025978 AGCD01045855;AGCD01045856;AGCD01045857;AGCD01045858;AGCD01045859;GBDF01052696;XM_005396369;XM_005396370 XP_005396426;XP_005396427 MODEL 8738992 pseudo LOC102015244 Golgi apparatus membrane protein TVP23 homolog B pseudogene NW_004955439 12044830 12045421 + 102015244 AGCD01035932 MODEL 8769238 protein-coding Bicdl1 BICD family like cargo adaptor 1 ENCODES a protein that exhibits dynactin binding (ortholog); small GTPase binding (ortholog); INVOLVED IN Golgi to secretory granule transport (ortholog); neuron projection development (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN centrosome (ortholog) NW_004955455 11503828 11606583 - 102020086 AGCD01046008;GBCQ01004436;GBDJ01422826;XM_005396589 XP_005396646 MODEL 8746048 protein-coding Slc10a3 solute carrier family 10 member 3 INVOLVED IN response to retinoic acid (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog) NW_004955580 1002029 1005673 - 102005197 AGCD01075638;GBCE01024045;XM_005414206 XP_005414263 MODEL 8946411 protein-coding Sh3bgrl2 SH3 domain binding glutamate rich protein like 2 ASSOCIATED WITH juvenile rheumatoid arthritis (ortholog); Leber congenital amaurosis 5 (ortholog); maple syrup urine disease (ortholog); FOUND IN nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955502 7517466 7575560 + 102008749 AGCD01064448;AGCD01064449;AGCD01064450;AGCD01064451;AGCD01064452;GBCE01135638;XM_005406914 XP_005406971 MODEL 8721736 ncrna LOC102007261 uncharacterized LOC102007261 NW_004955431 18572768 18575376 - 102007261 AGCD01030431;XR_261488 MODEL 9058702 protein-coding Klhl18 kelch like family member 18 INVOLVED IN positive regulation of mitotic cell cycle phase transition (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH Luscan-Lumish Syndrome (ortholog); Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog) NW_004955420 24917001 24968712 - 102016815 AGCD01021338;AGCD01021339;GBDF01126297;XM_005383411;XM_005383412;XM_005383414 XP_005383468;XP_005383469;XP_005383471 MODEL 8725546 protein-coding LOC102013444 vomeronasal type-2 receptor 116-like NW_004955524 3567737 3596413 + 102013444 AGCD01068907;AGCD01068908;AGCD01068909;AGCD01068910;AGCD01068911;AGCD01068912;AGCD01068913;GBDF01116192;XM_005409711 XP_005409768 MODEL 8839203 protein-coding Taf4b TATA-box binding protein associated factor 4b ENCODES a protein that exhibits DNA binding (ortholog); NF-kappaB binding (ortholog); INVOLVED IN mRNA transcription by RNA polymerase II (ortholog); positive regulation of stem cell proliferation (ortholog); positive regulation of transcription initiation by RNA polymerase II (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); spermatogenic failure 13 (ortholog); FOUND IN fibrillar center (ortholog); nucleoplasm (ortholog); transcription factor TFIID complex (ortholog) NW_004955402 14296202 14425298 + 102020862 AGCD01000424;AGCD01000425;AGCD01000426;AGCD01000427;AGCD01000428;GBDF01013559;GBDF01013560;XM_013505611 XP_013361065 MODEL 8959600 pseudo LOC102025980 eukaryotic translation initiation factor 4E pseudogene NW_004955408 35832410 35833045 - 102025980 AGCD01008963 MODEL 8839329 protein-coding LOC102023665 proline-rich protein 2-like NW_004955407 41880453 41882002 - 102023665 AGCD01007883;AGCD01007884;GBCQ01112740;XM_005375993 XP_005376050 MODEL 8759352 pseudo LOC102023976 uncharacterized protein C12orf31 homolog pseudogene NW_004955405 9670993 9674084 + 102023976 AGCD01004787 MODEL 9066885 protein-coding Bicdl2 BICD family like cargo adaptor 2 ENCODES a protein that exhibits small GTPase binding (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog) NW_004955442 14306144 14314060 + 102006166 AGCD01037810;GBCQ01178276;XM_005391372;XM_005391373 XP_005391429;XP_005391430 MODEL 10292723 ncrna LOC106146895 uncharacterized LOC106146895 NW_004955501 2465524 2472611 - 106146895 AGCD01064082;XR_001231519 MODEL 9027005 pseudo LOC102020397 DNA-directed RNA polymerases I, II, and III subunit RPABC4 pseudogene NW_004955448 6798525 6799244 + 102020397 AGCD01041393;XM_005393159 MODEL 8911608 protein-coding LOC102022559 ATP-binding cassette sub-family G member 2-like NW_004955405 9444970 9614939 + 102022559 AGCD01004773;AGCD01004774;AGCD01004775;AGCD01004776;AGCD01004777;AGCD01004778;AGCD01004779;AGCD01004780;AGCD01004781;AGCD01004782;AGCD01004783;AGCD01004784;GBCQ01014385;XM_005374296;XM_005374297 XP_005374353;XP_005374354 MODEL 9042515 protein-coding LOC102012249 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955546 2009351 2010344 + 102012249 AGCD01072081;XM_013508417 XP_013363871 MODEL 8781205 ncrna LOC102006132 uncharacterized LOC102006132 NW_004955419 22988158 23031113 - 102006132 AGCD01020311;GBDF01280732;XR_260655 MODEL 8838696 protein-coding Lpar3 lysophosphatidic acid receptor 3 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); phospholipid binding (ortholog); INVOLVED IN bleb assembly (ortholog); collateral sprouting (ortholog); G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; FOUND IN axon (ortholog); cilium (ortholog); plasma membrane (ortholog) NW_004955423 9063804 9133203 + 102028433 AGCD01023651;AGCD01023652;AGCD01023653;GBBH01077389;XM_005385152;XM_013514355 XP_005385209;XP_013369809 MODEL 9030562 protein-coding Taf5 TATA-box binding protein associated factor 5 ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); promoter-specific chromatin binding (ortholog); INVOLVED IN DNA-templated transcription initiation (ortholog); mRNA transcription by RNA polymerase II (ortholog); positive regulation of transcription initiation by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); FOUND IN actin cytoskeleton (ortholog); chromatin (ortholog); nucleolus (ortholog) NW_004955485 7159199 7176269 - 102014455 AGCD01058638;AGCD01058639;GBDF01127903;XM_013504089 XP_013359543 MODEL 39133642 mirna MIR424 microRNA 424 8740841 pseudo LOC102005827 60S ribosomal protein L6-like NW_004955430 3987198 3988065 - 102005827 AGCD01029239;XR_261416 MODEL 39133635 snrna U4 U4 spliceosomal RNA 8939092 protein-coding LOC102025041 vascular non-inflammatory molecule 3-like NW_004955436 13263200 13274869 - 102025041 AGCD01033856;GBDK01345445;XM_005389218 XP_005389275 MODEL 8719435 protein-coding LOC102018242 vomeronasal type-2 receptor 1-like NW_004955448 7059300 7085760 + 102018242 AGCD01041399;AGCD01041400;XM_005393075 XP_005393132 MODEL 10218039 ncrna LOC106149998 uncharacterized LOC106149998 NW_004955460 9778126 9783630 - 106149998 AGCD01048551;XR_001236508 MODEL 39133636 snrna U4 U4 spliceosomal RNA 8728627 pseudo LOC102025042 cyclin-G1 pseudogene NW_004955529 164670 166971 - 102025042 AGCD01069623 MODEL 8841514 protein-coding Tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 ENCODES a protein that exhibits dolichyl-phosphate-mannose-protein mannosyltransferase activity (ortholog); INVOLVED IN protein O-linked mannosylation (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955505 5200900 5454785 + 102014379 AGCD01065147;AGCD01065148;AGCD01065149;GBDK01128179;XM_013505922 XP_013361376 MODEL 39132381 snrna U6 U6 spliceosomal RNA 8791315 protein-coding LOC102018249 nuclear RNA export factor 2-like NW_004956329 1022 3854 - 102018249 AGCD01079439;GBDK01180906;XM_005415196 XP_005415253 MODEL 8846073 ncrna LOC102027010 uncharacterized LOC102027010 NW_004955437 16806341 16810375 - 102027010 AGCD01034711;GBCE01063246;XR_001235005;XR_001235006;XR_261883 MODEL 8728506 protein-coding Bicra BRD4 interacting chromatin remodeling complex associated protein ENCODES a protein that exhibits transcription regulator activator activity (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Coffin-Siris syndrome 1 (ortholog); Coffin-Siris syndrome 12 (ortholog); Developmental Disease (ortholog); FOUND IN nucleus (ortholog); SWI/SNF complex (ortholog) NW_004955574 1463656 1484709 + 102018239 AGCD01075180;AGCD01075181;GBCB01112015;GBCE01142278;XM_013509545 XP_013364999 MODEL 10164878 protein-coding LOC106146896 translation initiation factor IF-2-like NW_004955501 5000376 5000882 + 106146896 AGCD01064149;GBDF01011258;GBDF01162881;XM_013505754 XP_013361208 MODEL 39132382 snrna U6 U6 spliceosomal RNA 9059429 protein-coding Ppp1r1c protein phosphatase 1 regulatory inhibitor subunit 1C NW_004955403 15219140 15340467 - 102018247 AGCD01002042;GBCQ01047452;XM_013515176 XP_013370630 MODEL 8916184 pseudo LOC102015245 RING finger and transmembrane domain-containing protein 1 pseudogene NW_004955547 363840 367226 + 102015245 AGCD01072151 MODEL 39132383 snrna U6 U6 spliceosomal RNA 9016002 ncrna LOC102005831 uncharacterized LOC102005831 NW_004955514 2457669 2462790 + 102005831 AGCD01067082;GBDF01145712;XR_264496 MODEL 10098298 protein-coding Gpr27 G protein-coupled receptor 27 INVOLVED IN positive regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); positive regulation of phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH malignant mesothelioma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955421 16352643 16353094 - 106148423 AGCD01021998;GBCE01104270;GBDJ01170215;XM_013513673 XP_013369127 MODEL 9030165 protein-coding LOC102021253 zinc finger protein 426 NW_004955495 883506 889089 - 102021253 AGCD01061658;AGCD01061659;AGCD01061660;GBCE01152430;GBDI01011093;XM_013505048 XP_013360502 MODEL 8956603 ncrna LOC102013451 uncharacterized LOC102013451 NW_004955547 654544 658859 - 102013451 AGCD01072171;GBDK01382015;XR_001232230;XR_264899 MODEL 8768951 protein-coding Klhl2 kelch like family member 2 ENCODES a protein that exhibits actin binding (ortholog); identical protein binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); FOUND IN actin cytoskeleton (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955403 40013840 40094853 - 102012390 AGCD01002656;AGCD01002657;AGCD01002658;AGCD01002659;GBCB01060956;XM_013513491 XP_013368945 MODEL 9028282 pseudo LOC102015248 thioredoxin-related transmembrane protein 1-like NW_004955442 16782819 16799267 - 102015248 AGCD01037913;AGCD01037914;AGCD01037915;AGCD01037916 MODEL 39132384 snrna U6 U6 spliceosomal RNA 10208793 ncrna LOC106149999 uncharacterized LOC106149999 NW_004955460 10259974 10263661 - 106149999 AGCD01048576;GBCE01142022;XR_001236509 MODEL 8719190 protein-coding Lacc1 laccase domain containing 1 ENCODES a protein that exhibits adenosine deaminase activity (ortholog); guanosine phosphorylase activity (ortholog); oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (ortholog); INVOLVED IN nucleotide-binding oligomerization domain containing 2 signaling pathway (ortholog); pattern recognition receptor signaling pathway (ortholog); positive regulation of cytokine production involved in immune response (ortholog); ASSOCIATED WITH genetic disease (ortholog); juvenile rheumatoid arthritis (ortholog); leprosy (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); nucleus (ortholog) NW_004955518 1794067 1809150 + 102009748 AGCD01067765;AGCD01067766;GBDF01277558;GBDF01277559;XM_005409073 XP_005409130 MODEL 8730835 pseudo LOC102012250 bromodomain-containing protein 7-like NW_004955441 5921864 5922609 - 102012250 AGCD01036892 MODEL 8914153 protein-coding Ibsp integrin binding sialoprotein ENCODES a protein that exhibits integrin binding (ortholog); small molecule binding (ortholog); INVOLVED IN bone mineralization (ortholog); cell adhesion (ortholog); cellular response to growth factor stimulus (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); Breast Neoplasms (ortholog); Neoplasm Metastasis (ortholog); FOUND IN extracellular space (ortholog); vesicle (ortholog) NW_004955474 2074659 2086289 - 102013823 AGCD01054275;GBCE01002013;XM_005401333;XM_013502793 XP_005401390;XP_013358247 MODEL 9032650 protein-coding LOC102022569 neural Wiskott-Aldrich syndrome protein-like NW_004955457 15824734 15826663 + 102022569 AGCD01047099;GBCQ01093605;XM_005397108 XP_005397165 MODEL 8979723 ncrna LOC102006138 uncharacterized LOC102006138 NW_004955420 26173887 26191360 - 102006138 AGCD01021392;GBDF01207381;XR_001233810;XR_260757 MODEL 39132385 snrna U6 U6 spliceosomal RNA 8717710 protein-coding Gpr3 G protein-coupled receptor 3 INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger (ortholog); negative regulation of cell cycle (ortholog); FOUND IN cytoplasm (ortholog); nuclear membrane (ortholog); plasma membrane (ortholog) NW_004955452 6648470 6651938 + 102004233 AGCD01044118;GBDF01030401;XM_005394907;XM_005394908 XP_005394964;XP_005394965 MODEL 8987744 ncrna LOC102017885 uncharacterized LOC102017885 NW_004955422 15698420 15702889 - 102017885 AGCD01022881;GBDF01159222;XR_001233961;XR_001233962;XR_001233963;XR_001233964 MODEL 8817253 protein-coding Klhl20 kelch like family member 20 ENCODES a protein that exhibits type II interferon binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN Golgi to endosome transport (ortholog); negative regulation of apoptotic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); autoimmune lymphoproliferative syndrome (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955406 13891589 13938964 + 102007622 AGCD01005955;GBDF01015418;XM_005374872 XP_005374929 MODEL 10232501 ncrna LOC106146897 uncharacterized LOC106146897 NW_004955501 5966782 5977507 - 106146897 AGCD01064176;GBDK01103319;XR_001231522 MODEL 8791428 protein-coding LOC102022571 low affinity immunoglobulin gamma Fc region receptor III-like NW_004955462 14728809 14740340 - 102022571 AGCD01049456;GBBH01117101;XM_005398310;XM_013521433;XM_013521434 XP_005398367;XP_013376887;XP_013376888 MODEL 8758771 ncrna LOC102006139 uncharacterized LOC102006139 NW_004955487 380275 384952 - 102006139 AGCD01059217;AGCD01059218;GBDF01221413;XR_263979 MODEL 8920217 ncrna LOC102003014 uncharacterized LOC102003014 NW_004955472 1903577 1923457 + 102003014 AGCD01053416;AGCD01053417;AGCD01053418;AGCD01053419;GBDF01013402;XR_001237086 MODEL 8932072 protein-coding Gpr31 G protein-coupled receptor 31 ENCODES a protein that exhibits arachidonate binding (ortholog); bioactive lipid receptor activity (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); negative regulation of inflammatory response (ortholog); positive regulation of immune response (ortholog); FOUND IN plasma membrane (ortholog) NW_004955439 14906304 14907574 + 102022965 AGCD01035993;XM_005390642 XP_005390699 MODEL 39133637 snrna U4 U4 spliceosomal RNA 8849684 pseudo LOC102006140 C-Myc-binding protein pseudogene NW_004955488 2573938 2602551 + 102006140 AGCD01059547 MODEL 9024451 pseudo LOC102023981 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 pseudogene NW_004955408 23761578 23763478 - 102023981 AGCD01008590 MODEL 8955522 protein-coding LOC102025043 membrane cofactor protein-like NW_004955436 2426907 2428109 - 102025043 AGCD01033607;GBDF01047091;XM_005389293 XP_005389350 MODEL 9042075 protein-coding LOC102021257 olfactory receptor 7A10-like NW_004955495 8472724 8479391 + 102021257 AGCD01062211;XM_005406179 XP_005406236 MODEL 8948397 ncrna LOC102020398 uncharacterized LOC102020398 NW_004955402 19310308 19321050 - 102020398 AGCD01000558;AGCD01000559;GBDF01182124;XR_259056 MODEL 8874476 protein-coding LOC102009926 chromosome unknown open reading frame, human C12orf57 INVOLVED IN camera-type eye morphogenesis (ortholog); cognition (ortholog); corpus callosum morphogenesis (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 9 (ortholog); developmental and epileptic encephalopathy 21 (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog) NW_004955413 4524236 4525760 + 102009926 AGCD01013621;GBDI01019226;XM_005378850 XP_005378907 MODEL 8804578 protein-coding LOC102022572 indolethylamine N-methyltransferase NW_004955410 31925147 31930528 + 102022572 AGCD01011334;GBCE01074653;XM_005377506 XP_005377563 MODEL 8986517 ncrna LOC102019483 uncharacterized LOC102019483 NW_004955411 12939284 12945654 - 102019483 AGCD01011861;GBDF01122716;XR_259935 MODEL 9020924 protein-coding Lpar5 lysophosphatidic acid receptor 5 INVOLVED IN behavioral response to pain (ortholog); positive regulation of CREB transcription factor activity (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); peroxisome biogenesis disorder 2B (ortholog) NW_004955413 4238312 4249869 - 102020230 AGCD01013604;GBDI01322578;XM_005378793;XM_005378794;XM_005378795;XM_005378796;XM_005378798;XM_005378799;XM_013511330;XM_013511331;XM_013511332;XM_013511333;XM_013511334;XM_013511336 XP_005378850;XP_005378851;XP_005378852;XP_005378853;XP_005378855;XP_005378856;XP_013366784;XP_013366785;XP_013366786;XP_013366787;XP_013366788;XP_013366790 MODEL 8976032 pseudo LOC102006141 BAG family molecular chaperone regulator 5-like NW_004955492 7211744 7213061 + 102006141 AGCD01060779 MODEL 8767738 protein-coding Spdya speedy/RINGO cell cycle regulator family member A ENCODES a protein that exhibits protein kinase activator activity (ortholog); protein kinase binding (ortholog); INVOLVED IN DNA damage response (ortholog); establishment of protein localization to telomere (ortholog); G1/S transition of mitotic cell cycle (ortholog); FOUND IN chromosome, telomeric region (ortholog); endoplasmic reticulum exit site (ortholog); nuclear envelope (ortholog) NW_004955469 10687519 10744808 + 102014767 AGCD01052545;AGCD01052546;AGCD01052547;AGCD01052548;AGCD01052549;GBDF01279718;XM_005400534;XM_005400535;XM_013522619 XP_005400591;XP_005400592;XP_013378073 MODEL 8723537 protein-coding Sh3bgrl3 SH3 domain binding glutamate rich protein like 3 ENCODES a protein that exhibits glutathione transferase activity (ortholog); INVOLVED IN cytoskeleton organization (ortholog); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); Experimental Liver Cirrhosis (ortholog); retinitis pigmentosa 59 (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); ruffle membrane (ortholog) NW_004955452 5683276 5684760 + 102015367 AGCD01044051;GBDF01000998;XM_005394851 XP_005394908 MODEL 8959493 protein-coding LOC102021258 uncharacterized LOC102021258 NW_004955498 3334724 3388529 - 102021258 AGCD01062897;AGCD01062898;AGCD01062899;AGCD01062900;XM_005406477 XP_005406534 MODEL 9068228 protein-coding Bicral BICRA like chromatin remodeling complex associated protein ASSOCIATED WITH autism spectrum disorder (ortholog); infantile Refsum disease (ortholog); prostate cancer (ortholog); FOUND IN SWI/SNF complex (ortholog) NW_004955437 8841830 8896391 + 102024273 AGCD01034501;AGCD01034502;AGCD01034503;AGCD01034504;AGCD01034505;AGCD01034506;GBDI01047312;XM_005389724;XM_005389725 XP_005389781;XP_005389782 MODEL 8863839 ncrna LOC102007263 uncharacterized LOC102007263 NW_004955432 19290564 19338278 + 102007263 AGCD01031177;AGCD01031178;GBBH01148299;XR_001234678;XR_261536 MODEL 39132388 snrna U6 U6 spliceosomal RNA 9014997 protein-coding Znf384 zinc finger protein 384 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN nucleocytoplasmic transport (ortholog); positive regulation of protein secretion (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); peroxisome biogenesis disorder 2B (ortholog); FOUND IN focal adhesion (ortholog) NW_004955413 4277059 4302638 - 102025338 AGCD01013604;GBCB01061168;XM_005378812;XM_013511319;XM_013511320;XM_013511321;XM_013511322;XM_013511323 XP_005378869;XP_013366773;XP_013366774;XP_013366775;XP_013366776;XP_013366777 MODEL 8994391 pseudo LOC102021259 60S ribosomal protein L36 pseudogene NW_004955424 10966934 10977357 + 102021259 AGCD01024536 MODEL 8950542 protein-coding LOC102028726 testis-specific Y-encoded protein 3-like NW_004955461 1759261 1770913 + 102028726 AGCD01048822;XM_005398068 XP_005398125 MODEL 8767652 ncrna LOC102005832 uncharacterized LOC102005832 NW_004955432 9508053 9514240 + 102005832 AGCD01030907;GBDF01055577;XR_261519 MODEL 39132389 snrna U6 U6 spliceosomal RNA 8711727 protein-coding Klhl21 kelch like family member 21 ENCODES a protein that exhibits cullin family protein binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN chromosome passenger complex localization to spindle midzone (ortholog); protein ubiquitination (ortholog); regulation of cytokinesis (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); high grade glioma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); polar microtubule (ortholog) NW_004955486 6038291 6047814 + 102024915 AGCD01059105;GBCB01002232;GBCE01134534;XM_005404316 XP_005404373 MODEL 9044199 protein-coding Vipr1 vasoactive intestinal peptide receptor 1 ENCODES a protein that exhibits peptide hormone binding (ortholog); pituitary adenylate cyclase-activating polypeptide receptor activity (ortholog); vasoactive intestinal polypeptide receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger (ortholog); ASSOCIATED WITH achalasia (ortholog); congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); Crohn's disease (ortholog); FOUND IN plasma membrane (ortholog); receptor complex (ortholog) NW_004955420 28234590 28253146 - 102029404 AGCD01021473;GBBH01142201;GBDF01062402;XM_013513578 XP_013369032 MODEL 10171674 ncrna LOC106146898 uncharacterized LOC106146898 NW_004955402 14478952 14497430 + 106146898 AGCD01000431;GBDI01319336;XR_001231526 MODEL 8738402 protein-coding Samd11 sterile alpha motif domain containing 11 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); PH domain binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); retinal rod cell development (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN nucleus (ortholog); PRC1 complex (ortholog) NW_004955486 9763704 9781132 - 102007238 AGCD01059198;AGCD01059199;GBDI01105768;XM_005404271 XP_005404328 MODEL 8769430 protein-coding Uprt uracil phosphoribosyltransferase homolog INVOLVED IN female pregnancy (ortholog); lactation (ortholog); response to insulin (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955562 1385617 1415277 + 102026918 AGCD01073977;AGCD01073978;AGCD01073979;GBCE01085390;XM_005413091 XP_005413148 MODEL 8765062 ncrna LOC102015250 uncharacterized LOC102015250 NW_004955444 3423922 3425125 + 102015250 AGCD01038790;GBDF01085447;XR_262235 MODEL 8855913 ncrna LOC102005833 uncharacterized LOC102005833 NW_004955516 4052159 4191251 + 102005833 AGCD01067516;AGCD01067517;AGCD01067518;AGCD01067519;GBBH01058464;XR_264537 MODEL 8878358 pseudo LOC102025045 CCR4-NOT transcription complex subunit 6-like pseudogene NW_004955438 4703387 4705781 - 102025045 AGCD01035047 MODEL 8916616 pseudo LOC102009135 cyclin-G1 pseudogene NW_004955647 79945 80944 + 102009135 AGCD01077761 MODEL 8838227 protein-coding Slc10a4 solute carrier family 10 member 4 INVOLVED IN adult behavior (ortholog); regulation of neurotransmitter loading into synaptic vesicle (ortholog); response to xenobiotic stimulus (ortholog); FOUND IN cholinergic synapse (ortholog); dopaminergic synapse (ortholog); serotonergic synapse (ortholog) NW_004955447 19189516 19194982 - 102012704 AGCD01041205;GBCE01165455;GBCQ01088285;XM_005392971 XP_005393028 MODEL 8842062 ncrna LOC102003300 uncharacterized LOC102003300 NW_004955588 694209 720110 + 102003300 AGCD01076118;AGCD01076119;GBDF01073805;XR_001232529;XR_265119 MODEL 8862526 pseudo LOC102019485 protein FAM136A pseudogene NW_004955411 22835359 22835809 - 102019485 AGCD01012098;XM_005377789 MODEL 8983925 protein-coding LOC102012257 lipopolysaccharide-binding protein NW_004955445 18358717 18389491 - 102012257 AGCD01039903;AGCD01039904;GBDJ01074877;XM_005392536;XR_001235614;XR_001235615;XR_001235616;XR_001235617;XR_262356 XP_005392593 MODEL 8799242 pseudo LOC102017009 sphingosine-1-phosphate phosphatase 1 pseudogene NW_004955475 1402316 1403564 + 102017009 AGCD01054752 MODEL 8831491 protein-coding Lpar6 lysophosphatidic acid receptor 6 INVOLVED IN blastocyst hatching (ortholog); ASSOCIATED WITH Autosomal Recessive Woolly Hair (ortholog); chromosome 13q14 deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); plasma membrane (ortholog) NW_004955431 2077093 2079000 - 102015753 AGCD01029922;GBCE01169968;XM_005387556 XP_005387613 MODEL 8868342 protein-coding Nek6 NIMA related kinase 6 ENCODES a protein that exhibits ATP binding (ortholog); DNA-binding transcription factor binding (ortholog); kinesin binding (ortholog); INVOLVED IN chromosome segregation (ortholog); peptidyl-serine phosphorylation (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955419 3762643 3833000 - 102025246 AGCD01019733;AGCD01019734;AGCD01019735;GBDI01216126;XM_005382497;XM_013513237;XM_013513239 XP_005382554;XP_013368691;XP_013368693 MODEL 8836750 protein-coding Sh3bp1 SH3 domain binding protein 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); semaphorin receptor binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN actin filament organization (ortholog); cell junction assembly (ortholog); cell migration (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); myoclonic dystonia 26 (ortholog); FOUND IN adherens junction (ortholog); bicellular tight junction (ortholog); cell leading edge (ortholog) NW_004955413 24042875 24054826 + 102007419 AGCD01014345;AGCD01014346;GBBH01092698;XM_005379214 XP_005379271 MODEL 9022934 ncrna LOC102017012 uncharacterized LOC102017012 NW_004955477 6170824 6176726 + 102017012 AGCD01055604;XR_263660 MODEL 8790647 pseudo LOC102013453 gamma-aminobutyric acid receptor-associated protein pseudogene NW_004955442 14455390 14458901 - 102013453 AGCD01037821 MODEL 8699581 protein-coding Znf385a zinc finger protein 385A ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); p53 binding (ortholog); INVOLVED IN apoptotic process (ortholog); DNA damage response (ortholog); hemostasis (ortholog); PARTICIPATES IN p53 signaling pathway; FOUND IN chromatin (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955458 1610245 1631639 - 102006215 AGCD01047194;AGCD01047195;AGCD01047196;AGCD01047197;GBDI01122147;XM_005397220;XM_005397223;XM_013521015;XM_013521016;XM_013521017 XP_005397277;XP_005397280;XP_013376469;XP_013376470;XP_013376471 MODEL 8871146 protein-coding Bid BH3 interacting domain death agonist ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN establishment of protein localization to membrane (ortholog); extrinsic apoptotic signaling pathway (ortholog); glial cell apoptotic process (ortholog); PARTICIPATES IN ceramide signaling pathway; FasL mediated signaling pathway; intrinsic apoptotic pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); bronchopulmonary dysplasia (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955454 5776656 5785500 - 102005665 AGCD01045187;AGCD01045188;GBCB01130016;GBDJ01272354;XM_013520182 XP_013375636 MODEL 8925291 protein-coding Tmtc2 transmembrane O-mannosyltransferase targeting cadherins 2 ENCODES a protein that exhibits dolichyl-phosphate-mannose-protein mannosyltransferase activity (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); protein O-linked mannosylation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Deafness (ortholog); Nonsyndromic Sensorineural Hearing Loss (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955405 20969836 21357939 + 102030493 AGCD01005065;AGCD01005066;AGCD01005067;GBDJ01031233;XM_005374399 XP_005374456 MODEL 39133638 snrna U4 U4 spliceosomal RNA 8956244 pseudo LOC102027011 cyclin-K-like NW_004955437 19158261 19160811 + 102027011 AGCD01034835 MODEL 8817020 protein-coding Nek7 NIMA related kinase 7 ENCODES a protein that exhibits molecular function activator activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to potassium ion (ortholog); positive regulation of NLRP3 inflammasome complex assembly (ortholog); positive regulation of telomere maintenance (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); Weight Gain (ortholog); FOUND IN cytoplasm (ortholog); microtubule organizing center (ortholog); nucleoplasm (ortholog) NW_004955406 34575292 34714024 + 102028715 AGCD01006508;AGCD01006509;AGCD01006510;GBBH01090871;GBCB01021956;XM_005375133 XP_005375190 MODEL 8801295 ncrna LOC102013456 uncharacterized LOC102013456 NW_004955559 488549 488991 + 102013456 AGCD01073587;GBDF01109206;XR_264993 MODEL 8928113 pseudo LOC102020399 U6 snRNA-associated Sm-like protein LSm5 pseudogene NW_004955450 3686193 3686602 + 102020399 AGCD01042440;XM_005393581 MODEL 8992363 protein-coding Vipr2 vasoactive intestinal peptide receptor 2 ENCODES a protein that exhibits pituitary adenylate cyclase-activating polypeptide receptor activity (ortholog); vasoactive intestinal polypeptide receptor activity (ortholog); INVOLVED IN activation of adenylate cyclase activity (ortholog); adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); negative regulation of smooth muscle cell proliferation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); colitis (ortholog); myoepithelioma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955579 1160620 1212711 - 102007065 AGCD01075570;AGCD01075571;GBCQ01126502;XM_013509665 XP_013365119 MODEL 8981821 protein-coding Klhl22 kelch like family member 22 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN cell division (ortholog); cellular response to amino acid stimulus (ortholog); cellular response to L-leucine (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN centrosome (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955442 19010971 19051300 - 102015670 AGCD01038030;AGCD01038031;GBDK01143136;XM_005391799;XM_005391800;XM_005391801;XM_005391802;XM_013517900;XM_013517901 XP_005391856;XP_005391857;XP_005391858;XP_005391859;XP_013373354;XP_013373355 MODEL 8830279 protein-coding LOC102025981 uncharacterized LOC102025981 NW_004955408 26937492 26964064 - 102025981 AGCD01008676;GBDF01076789;XM_005376587 XP_005376644 MODEL 39133639 snrna U4 U4 spliceosomal RNA 8777949 protein-coding Ppp1r2 protein phosphatase 1 regulatory inhibitor subunit 2 ENCODES a protein that exhibits molecular function inhibitor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN negative regulation of protein binding (ortholog); FOUND IN dendritic spine (ortholog); growth cone (ortholog) NW_004955420 13592508 13613165 + 102024684 AGCD01020925;GBDI01077892;XM_005415381;XM_013513575 XP_005415438;XP_013369029 MODEL 8732528 protein-coding LOC102023670 cathepsin G NW_004955409 35767304 35770140 + 102023670 AGCD01010432;XM_005376992 XP_005377049 MODEL 8989933 pseudo LOC102009138 heterogeneous nuclear ribonucleoprotein M pseudogene NW_004955403 28891551 28908137 - 102009138 AGCD01002352 MODEL 8701428 protein-coding Tex12 testis expressed 12 INVOLVED IN meiotic DNA repair synthesis (ortholog); synaptonemal complex assembly (ortholog); ASSOCIATED WITH BH4-deficient hyperphenylalaninemia A (ortholog); chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); FOUND IN central element (ortholog); chromosome (ortholog); synaptonemal complex (ortholog) NW_004955412 13829637 13834481 + 102028391 AGCD01012846;GBCQ01024502;XM_005378113;XM_005378115;XM_005378116;XM_005378117;XM_013511042;XM_013511044 XP_005378170;XP_005378172;XP_005378173;XP_005378174;XP_013366496;XP_013366498 MODEL 8810919 protein-coding Slc10a5 solute carrier family 10 member 5 NW_004955417 40256 48658 - 102023355 AGCD01017784;AGCD01017785;GBCQ01072959;XM_005381715 XP_005381772 MODEL 8871813 ncrna LOC102024593 uncharacterized LOC102024593 NW_004955427 12460417 12476643 - 102024593 AGCD01027214;AGCD01027215;GBDF01222863;XR_001234408;XR_001234409 MODEL 8737908 pseudo LOC102003301 60S ribosomal protein L9 pseudogene NW_004955402 38686017 38686662 + 102003301 AGCD01000966 MODEL 8860675 ncrna LOC102007599 uncharacterized LOC102007599 NW_004955556 1440615 1452951 + 102007599 AGCD01073194;GBCE01045813;XR_264977 MODEL 39133674 mirna MIR425 microRNA 425 9055587 pseudo LOC102008782 protein SET-like NW_004955563 171952 176650 - 102008782 AGCD01074050;AGCD01074051 MODEL 10212724 ncrna LOC106149159 uncharacterized LOC106149159 NW_004955438 17251605 17254197 - 106149159 AGCD01035436;GBDF01278675;XR_001235143 MODEL 39132858 snrna U6 U6 spliceosomal RNA 10307010 ncrna LOC106146899 uncharacterized LOC106146899 NW_004955501 4494953 4496458 - 106146899 AGCD01064130;GBDK01101200;XR_001231524 MODEL 8863071 protein-coding Tex13a testis expressed 13A ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955548 2078523 2080119 - 102005305 AGCD01072386;GBDK01049334;XM_005412010 XP_005412067 MODEL 9032812 pseudo LOC102003302 COMM domain-containing protein 10-like NW_004955602 139591 140263 + 102003302 AGCD01076763 MODEL 405822157 mirna MIR431 microRNA 431 8727125 ncrna LOC102027013 uncharacterized LOC102027013 NW_004955438 14888310 14894069 - 102027013 AGCD01035354;XR_001235151;XR_261934;XR_261935 MODEL 8912875 pseudo LOC102015252 CD209 antigen-like protein E NW_004955563 1428249 1432409 - 102015252 AGCD01074147 MODEL 39132860 snrna U6 U6 spliceosomal RNA 8708539 protein-coding Tex13b testis expressed 13B ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Charcot-Marie-Tooth disease type X (ortholog) NW_004955490 7943444 7944995 + 102015732 AGCD01060269;GBDF01087099;XM_005404683 XP_005404740 MODEL 8969110 ncrna LOC102025982 uncharacterized LOC102025982 NW_004955409 12686951 12701458 + 102025982 AGCD01009556;GBCB01000856;XR_259779 MODEL 8737975 protein-coding LOC102007264 ATP-binding cassette sub-family G member 2-like NW_004955433 399182 486055 - 102007264 AGCD01031317;AGCD01031318;AGCD01031319;AGCD01031320;AGCD01031321;AGCD01031322;AGCD01031323;AGCD01031324;GBDJ01086753;XM_005388159 XP_005388216 MODEL 405822150 mirna MIR432 microRNA 432 8996562 protein-coding Gpr32 G protein-coupled receptor 32 ASSOCIATED WITH autism spectrum disorder (ortholog) NW_004955559 500852 501880 - 102016206 AGCD01073590;XM_005412970 XP_005413027 MODEL 8778798 pseudo LOC102027014 60S ribosomal protein L26-like NW_004955439 1201211 1201645 + 102027014 AGCD01035603 MODEL 39133640 snrna U4 U4 spliceosomal RNA 9005016 protein-coding Lpcat1 lysophosphatidylcholine acyltransferase 1 ENCODES a protein that exhibits 1-acylglycerol-3-phosphate O-acyltransferase activity (ortholog); 1-acylglycerophosphocholine O-acyltransferase activity (ortholog); 1-alkylglycerophosphocholine O-acetyltransferase activity (ortholog); INVOLVED IN negative regulation of phosphatidylcholine biosynthetic process (ortholog); phosphatidylcholine acyl-chain remodeling (ortholog); phosphatidylcholine biosynthetic process (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 2 (ortholog); dopamine transporter deficiency syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); lipid droplet (ortholog) NW_004955504 760941 791996 - 102020588 AGCD01064829;GBBH01033177;GBDF01208884;XM_013505909 XP_013361363 MODEL 8758607 pseudo LOC102024594 kinesin-associated protein 3 pseudogene NW_004955427 21459739 21461843 - 102024594 AGCD01027445 MODEL 8976061 protein-coding Lactb lactamase beta ENCODES a protein that exhibits identical protein binding (ortholog); peptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); regulation of lipid metabolic process (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955450 12140049 12155600 - 102010652 AGCD01042692;GBBH01149956;GBDF01125044;XM_013519043;XM_013519044 XP_013374497;XP_013374498 MODEL 8746579 ncrna LOC102023984 uncharacterized LOC102023984 NW_004955460 5359468 5361667 + 102023984 AGCD01048450;GBDI01207938;XR_263031 MODEL 8923775 protein-coding Slc10a6 solute carrier family 10 member 6 ENCODES a protein that exhibits sodium-dependent organic anion transmembrane transporter activity (ortholog); INVOLVED IN sodium-dependent organic anion transport (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog) NW_004955474 2949773 2982458 + 102030188 AGCD01054315;AGCD01054316;AGCD01054317;AGCD01054318;GBCE01042605;XM_013502783 XP_013358237 MODEL 8930882 protein-coding Erbb4 erb-b2 receptor tyrosine kinase 4 ENCODES a protein that exhibits epidermal growth factor receptor activity (ortholog); epidermal growth factor receptor binding (ortholog); GABA receptor binding (ortholog); INVOLVED IN cardiac muscle tissue regeneration (ortholog); cell fate commitment (ortholog); cell migration (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH amblyopia (ortholog); amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 10 (ortholog); FOUND IN basolateral plasma membrane (ortholog); caveola (ortholog); dendrite (ortholog) NW_004955457 3177905 4236152 + 102026721 AGCD01046765;AGCD01046766;AGCD01046767;AGCD01046768;AGCD01046769;AGCD01046770;AGCD01046771;AGCD01046772;AGCD01046773;AGCD01046774;AGCD01046775;AGCD01046776;AGCD01046777;AGCD01046778;AGCD01046779;AGCD01046780;AGCD01046781;AGCD01046782;AGCD01046783;AGCD01046784;AGCD01046785;AGCD01046786;AGCD01046787;GBCQ01117703;GBCQ01117704;XM_005396937;XM_005396938;XM_005396939;XM_005396940;XM_013520736 XP_005396994;XP_005396995;XP_005396996;XP_005396997;XP_013376190 MODEL 8871601 ncrna LOC102020408 uncharacterized LOC102020408 NW_004955404 30460342 30494908 + 102020408 AGCD01004008;AGCD01004009;GBDK01040755;XR_001234883;XR_001234884 MODEL 9033946 protein-coding Urb1 URB1 ribosome biogenesis homolog ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); Familial Platelet Disorder with Associated Myeloid Malignancy (ortholog); FOUND IN fibrillar center (ortholog); nucleolus (ortholog) NW_004955407 31849103 31915457 - 102015692 AGCD01007662;AGCD01007663;GBBH01186892;XM_005375666;XM_013504123;XM_013504128;XM_013504131 XP_005375723;XP_013359577;XP_013359582;XP_013359585 MODEL 8861735 pseudo LOC102019486 glycolipid transfer protein-like NW_004955464 11913275 11914481 - 102019486 AGCD01050168 MODEL 8814818 pseudo LOC102003304 putative zinc finger protein 724 NW_004955607 218870 244872 - 102003304 AGCD01076979;AGCD01076980;AGCD01076981;XM_005414905 MODEL 8918719 protein-coding LOC102003015 olfactory receptor 51G2-like NW_004955414 20898763 20899722 - 102003015 AGCD01015395;XM_005380485 XP_005380542 MODEL 8949066 protein-coding Virma vir like m6A methyltransferase associated INVOLVED IN mRNA processing (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955417 10690128 10759808 - 102026320 AGCD01018086;AGCD01018087;AGCD01018088;AGCD01018089;GBBH01076297;XM_005381809;XM_005381810;XM_005381811 XP_005381866;XP_005381867;XP_005381868 MODEL 8740475 protein-coding LOC102015253 vomeronasal type-1 receptor 2-like NW_004955569 918627 919520 + 102015253 AGCD01074626;XM_005413514 XP_005413571 MODEL 9012033 protein-coding LOC102021261 uncharacterized LOC102021261 NW_004955504 891729 893066 + 102021261 AGCD01064831;GBDF01150503;XM_013505867 XP_013361321 MODEL 8825188 ncrna LOC102028727 uncharacterized LOC102028727 NW_004955410 28185233 28195867 + 102028727 AGCD01011245;GBDF01123676;XR_001232703;XR_259875 MODEL 8872965 protein-coding Urb2 URB2 ribosome biogenesis homolog ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); epilepsy (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN aggresome (ortholog); midbody (ortholog); nucleolus (ortholog) NW_004955492 8451367 8478213 - 102016606 AGCD01060812;GBDK01278444;XM_005405006 XP_005405063 MODEL 8750663 protein-coding Scx scleraxis bHLH transcription factor ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN BMP signaling pathway (ortholog); cell differentiation (ortholog); cellular response to BMP stimulus (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955454 2886981 2888829 + 102018058 AGCD01045039;GBCB01079555;GBCQ01092845;XM_013520103 XP_013375557 MODEL 126903069 mirna MIR448 microRNA 448 8858247 protein-coding LOC102025985 T-cell surface glycoprotein CD1c3-like NW_004955462 1490616 1494592 - 102025985 AGCD01049124;GBBH01132147;GBDK01092910;XM_005398317;XM_013521351 XP_005398374;XP_013376805 MODEL 8930423 pseudo LOC102028730 mortality factor 4-like protein 1 pseudogene NW_004955465 12954454 12956376 + 102028730 AGCD01050573 MODEL 8883391 protein-coding Vit vitrin ENCODES a protein that exhibits glycosaminoglycan binding (ortholog); INVOLVED IN extracellular matrix organization (ortholog); positive regulation of cell-substrate adhesion (ortholog); spinal cord development (ortholog); FOUND IN extracellular matrix (ortholog); interstitial matrix (ortholog) NW_004955441 4527281 4650384 + 102028133 AGCD01036844;AGCD01036845;AGCD01036846;AGCD01036847;AGCD01036848;AGCD01036849;AGCD01036850;GBCE01055932;XM_005390859;XM_013517634 XP_005390916;XP_013373088 MODEL 8810344 protein-coding Lpcat2 lysophosphatidylcholine acyltransferase 2 ENCODES a protein that exhibits 1-acylglycerol-3-phosphate O-acyltransferase activity (ortholog); 1-acylglycerophosphocholine O-acyltransferase activity (ortholog); 1-alkylglycerophosphocholine O-acetyltransferase activity (ortholog); INVOLVED IN membrane organization (ortholog); phosphatidylcholine acyl-chain remodeling (ortholog); platelet activating factor biosynthetic process (ortholog); ASSOCIATED WITH Chromosome 16q12 Duplication Syndrome (ortholog); Osteolysis Hereditary Multicentric (ortholog); polycystic ovary syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi stack (ortholog) NW_004955433 13052480 13120197 + 102005957 AGCD01031674;AGCD01031675;AGCD01031676;GBDI01006652;GBDJ01353510;XM_005388319 XP_005388376 MODEL 10302019 protein-coding LOC106149160 tRNA (guanine-N(7)-)-methyltransferase-like NW_004955438 18261355 18267375 - 106149160 AGCD01035470;GBDF01074659;XM_013517204;XM_013517205;XR_001235144;XR_001235145;XR_001235146;XR_001235147;XR_001235148 XP_013372658;XP_013372659 MODEL 8755608 ncrna LOC102013457 uncharacterized LOC102013457 NW_004955567 1568026 1577962 + 102013457 AGCD01074483;AGCD01074484;GBDF01014518;XR_265032 MODEL 8863543 ncrna LOC102024595 uncharacterized LOC102024595 NW_004955428 4794656 4795986 - 102024595 AGCD01027700;GBDF01264382;XR_261295 MODEL 8904492 ncrna LOC102006143 uncharacterized LOC102006143 NW_004955493 8176730 8196458 - 102006143 AGCD01061275;AGCD01061276;AGCD01061277;AGCD01061278;AGCD01061279;AGCD01061280;GBDK01245153;XR_001231286;XR_001231287;XR_264097 MODEL 9004178 ncrna LOC102023988 uncharacterized LOC102023988 NW_004955462 9458709 9460639 + 102023988 AGCD01049339;GBDF01126525;XR_263112 MODEL 8848705 protein-coding Lactb2 lactamase beta 2 ENCODES a protein that exhibits RNA endonuclease activity (ortholog); single-stranded RNA binding (ortholog); zinc ion binding (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955444 9059999 9088705 + 102029910 AGCD01038956;AGCD01038957;AGCD01038958;GBDK01276467;XM_005392104 XP_005392161 MODEL 10370158 ncrna LOC106149161 uncharacterized LOC106149161 NW_004955438 17192770 17225516 - 106149161 AGCD01035434;AGCD01035435;AGCD01035436;GBCQ01156379;XR_001235149 MODEL 8886062 protein-coding Klhl23 kelch like family member 23 NW_004955449 4839500 4856109 - 102025741 AGCD01041900;AGCD01041901;GBCB01005874;GBDJ01062249;XM_013518729 XP_013374183 MODEL 39132390 snrna U6 U6 spliceosomal RNA 10333698 ncrna LOC106150000 uncharacterized LOC106150000 NW_004955460 9840365 9842792 + 106150000 AGCD01048556;XR_001236510 MODEL 8961610 protein-coding LOC102024596 olfactory receptor 4C11-like NW_004955511 318058 318990 + 102024596 AGCD01066327;XM_005407940 XP_005407997 MODEL 9006379 protein-coding Taf5l TATA-box binding protein associated factor 5 like ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN regulation of DNA-templated transcription (ortholog); regulation of somatic stem cell population maintenance (ortholog); regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955492 8478147 8515988 + 102014793 AGCD01060812;AGCD01060813;AGCD01060814;AGCD01060815;AGCD01060816;GBBH01057779;XM_005405001;XM_005405002;XM_005405003;XM_013504717;XM_013504718 XP_005405058;XP_005405059;XP_005405060;XP_013360171;XP_013360172 MODEL 8837726 pseudo LOC102023673 cytochrome c oxidase subunit 7A-related protein, mitochondrial pseudogene NW_004955462 7511151 7511917 - 102023673 AGCD01049305 MODEL 8777274 protein-coding Sh3bp2 SH3 domain binding protein 2 ENCODES a protein that exhibits phosphotyrosine residue binding (ortholog); SH3 domain binding (ortholog); ASSOCIATED WITH cherubism (ortholog); Ellis-Van Creveld syndrome (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog) NW_004955514 1700889 1730002 + 102026459 AGCD01067061;AGCD01067062;GBDF01124956;XM_005408740;XM_005408741;XM_013506799;XM_013506800;XM_013506801;XM_013506802 XP_005408797;XP_005408798;XP_013362253;XP_013362254;XP_013362255;XP_013362256 MODEL 8795683 protein-coding Bik BCL2 interacting killer ENCODES a protein that exhibits BH domain binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN apoptotic mitochondrial changes (ortholog); male gonad development (ortholog); positive regulation of protein-containing complex assembly (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; ASSOCIATED WITH ataxia telangiectasia (ortholog); breast cancer (ortholog); colon cancer (ortholog); FOUND IN Bcl-2 family protein complex (ortholog); mitochondrial envelope (ortholog) NW_004955413 28277727 28294032 + 102015396 AGCD01014555;GBDK01226774;XM_005379433 XP_005379490 MODEL 39133641 snrna U4 U4 spliceosomal RNA 8995928 pseudo LOC102017887 small nuclear ribonucleoprotein Sm D2 pseudogene NW_004955422 19113364 19114426 + 102017887 AGCD01022978 MODEL 39132391 snrna U6 U6 spliceosomal RNA 10280211 ncrna LOC106149162 uncharacterized LOC106149162 NW_004955438 12803847 12827825 - 106149162 AGCD01035273;GBDF01264835;XR_001235150 MODEL 8772816 protein-coding Dgcr8 DGCR8 microprocessor complex subunit ENCODES a protein that exhibits double-stranded RNA binding (ortholog); heme binding (ortholog); identical protein binding (ortholog); INVOLVED IN DNA damage response (ortholog); positive regulation of pre-miRNA processing (ortholog); primary miRNA processing (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH alcohol dependence (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955442 17998565 18034247 - 102025296 AGCD01037991;AGCD01037992;AGCD01037993;AGCD01037994;GBCE01023470;XM_005391742;XM_013517769 XP_005391799;XP_013373223 MODEL 150537126 mirna MIR449A microRNA 449a 8778587 protein-coding Nek8 NIMA related kinase 8 INVOLVED IN animal organ morphogenesis (ortholog); determination of left/right symmetry (ortholog); heart development (ortholog); ASSOCIATED WITH autosomal recessive polycystic kidney disease (ortholog); cystic kidney disease (ortholog); genetic disease (ortholog); FOUND IN ciliary base (ortholog); ciliary inversin compartment (ortholog); cilium (ortholog) NW_004955481 4417773 4427885 - 102021658 AGCD01056937;GBDI01002899;XM_005402716;XM_013503384;XM_013503385 XP_005402773;XP_013358838;XP_013358839 MODEL 39132393 snrna U6 U6 spliceosomal RNA 8756924 ncrna LOC102017890 uncharacterized LOC102017890 NW_004955424 1228693 1258354 - 102017890 AGCD01024233;AGCD01024234;GBDF01055490;XR_001234151;XR_261022 MODEL 8993411 protein-coding Scyl1 SCY1 like pseudokinase 1 INVOLVED IN inflammatory response (ortholog); neuron development (ortholog); protein localization (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive spinocerebellar ataxia 21 (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN cis-Golgi network (ortholog); COPI vesicle coat (ortholog); cytoplasm (ortholog) NW_004955422 19730224 19742348 - 102008232 AGCD01023030;AGCD01023031;GBCQ01036441;XM_005384488 XP_005384545 MODEL 8947861 protein-coding Xkr6 XK related 6 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN plasma membrane (ortholog) NW_004955403 52410318 52636952 - 102025203 AGCD01003003;AGCD01003004;AGCD01003005;AGCD01003006;AGCD01003007;AGCD01003008;AGCD01003009;AGCD01003010;AGCD01003011;GBDJ01373326;XM_005373810 XP_005373867 MODEL 8848991 protein-coding Slc10a7 solute carrier family 10 member 7 INVOLVED IN bone development (ortholog); heparin proteoglycan biosynthetic process (ortholog); intracellular calcium ion homeostasis (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955428 1999341 2250201 - 102010606 AGCD01027627;AGCD01027628;AGCD01027629;AGCD01027630;AGCD01027631;GBDI01357674;XM_005386663;XM_013515325;XM_013515326 XP_005386720;XP_013370779;XP_013370780 MODEL 126903065 mirna MIR450A1 microRNA 450a-1 8883953 protein-coding LOC102013462 uncharacterized LOC102013462 NW_004955402 4568211 4580597 + 102013462 AGCD01000124;AGCD01000125;GBBH01104032;XM_013518141 XP_013373595 MODEL 39132394 snrna U6 U6 spliceosomal RNA 8807400 protein-coding Ibtk inhibitor of Bruton tyrosine kinase ENCODES a protein that exhibits protein kinase binding (ortholog); protein tyrosine kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of protein phosphorylation (ortholog); release of sequestered calcium ion into cytosol (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955411 10052584 10132203 - 102010347 AGCD01011770;AGCD01011771;AGCD01011772;GBDJ01272577;XM_005377680;XM_005377681;XM_005377682;XM_005377683;XM_013510860 XP_005377737;XP_005377738;XP_005377739;XP_005377740;XP_013366314 MODEL 9002061 pseudo LOC102027016 muskelin pseudogene NW_004955546 349745 351946 - 102027016 AGCD01071967 MODEL 126903066 mirna MIR450A2 microRNA 450a-2 8929205 pseudo LOC102005835 transcription initiation factor TFIID subunit 2-like NW_004955433 1848991 1866778 - 102005835 AGCD01031371;AGCD01031372 MODEL 9061053 protein-coding Scyl2 SCY1 like pseudokinase 2 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN brain development (ortholog); clathrin-dependent endocytosis (ortholog); endosome to lysosome transport (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita-4 (ortholog); genetic disease (ortholog) NW_004955405 35984667 36043581 + 102020749 AGCD01005407;AGCD01005408;GBDF01119404;XM_005374529;XM_005374530 XP_005374586;XP_005374587 MODEL 39132396 snrna U6 U6 spliceosomal RNA 8942585 protein-coding Slc11a1 solute carrier family 11 member 1 ENCODES a protein that exhibits iron ion transmembrane transporter activity (ortholog); manganese ion transmembrane transporter activity (ortholog); metal cation:proton antiporter activity (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); antigen processing and presentation of peptide antigen (ortholog); cadmium ion transmembrane transport (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); alacrima, achalasia, and impaired intellectual development syndrome (ortholog); asthma (ortholog); FOUND IN endosome membrane (ortholog); late endosome (ortholog); late endosome membrane (ortholog) NW_004955453 14980562 14995118 - 102011273 AGCD01044879;AGCD01044880;GBDF01008960;XM_005395650;XM_005395651;XM_013519872;XM_013519873;XM_013519874;XM_013519875;XM_013519876 XP_005395707;XP_005395708;XP_013375326;XP_013375327;XP_013375328;XP_013375329;XP_013375330 MODEL 39133647 snrna U4 U4 spliceosomal RNA 8716221 ncrna LOC102012259 uncharacterized LOC102012259 NW_004955402 6847522 6850356 - 102012259 AGCD01000162;GBDF01162294;XR_001235451 MODEL 151707891 mirna MIR451A microRNA 451a 10251927 ncrna LOC106149163 uncharacterized LOC106149163 NW_004955404 5046264 5049359 - 106149163 AGCD01003303;GBDF01250411;XR_001235153 MODEL 39132398 snrna U6 U6 spliceosomal RNA 8864182 protein-coding Ppp1r21 protein phosphatase 1 regulatory subunit 21 ENCODES a protein that exhibits RNA binding (ortholog); ASSOCIATED WITH genetic disease (ortholog); NEURODEVELOPMENTAL DISORDER WITH HYPOTONIA, FACIAL DYSMORPHISM, AND BRAIN ABNORMALITIES (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN early endosome (ortholog) NW_004955441 15002126 15061967 + 102018988 AGCD01037238;AGCD01037239;AGCD01037240;AGCD01037241;GBDI01081035;XM_013517520 XP_013372974 MODEL 8767205 ncrna LOC102019487 uncharacterized LOC102019487 NW_004955412 6217988 6251126 + 102019487 AGCD01012668;AGCD01012669;GBDF01075391;XR_001232893;XR_001232894;XR_259979 MODEL 8750983 pseudo LOC102007272 non-histone chromosomal protein HMG-17 pseudogene NW_004955528 2647383 2647654 - 102007272 AGCD01069588 MODEL 8743367 protein-coding LOC102003016 uncharacterized LOC102003016 NW_004955415 11944706 11993056 - 102003016 AGCD01016181;AGCD01016182;GBDF01221008;XM_013512125 XP_013367579 MODEL 8728125 protein-coding LOC102007601 kallikrein-4-like NW_004955558 1612493 1615729 + 102007601 AGCD01073453;XM_005412748 XP_005412805 MODEL 8743187 protein-coding LOC102021265 secreted and transmembrane protein 1A NW_004955506 823508 832146 + 102021265 AGCD01065236;AGCD01065237;GBDI01197125;GBDJ01319535;XM_013506143 XP_013361597 MODEL 8939753 protein-coding Znf385b zinc finger protein 385B ENCODES a protein that exhibits p53 binding (ortholog); INVOLVED IN intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); FOUND IN nucleus (ortholog) NW_004955403 17196597 17583050 + 102021827 AGCD01002072;AGCD01002073;AGCD01002074;AGCD01002075;AGCD01002076;AGCD01002077;AGCD01002078;AGCD01002079;GBDK01184651;XM_005373358;XM_005373359;XM_005373360;XM_005373362;XM_005373363 XP_005373415;XP_005373416;XP_005373417;XP_005373419;XP_005373420 MODEL 8945747 protein-coding LOC102012260 eukaryotic translation elongation factor 1 epsilon-1 NW_004955583 253526 254563 - 102012260 AGCD01075808;GBCC01054013;XM_005414299 XP_005414356 MODEL 8799876 protein-coding Gpr33 G protein-coupled receptor 33 ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Epidermolysis Bullosa Simplex 5D with Nail Dystrophy (ortholog); mitochondrial complex I deficiency (ortholog) NW_004955409 29124200 29130823 + 102010876 AGCD01010253;GBBH01175297;XM_005376955 XP_005377012 MODEL 8734029 protein-coding Taf6 TATA-box binding protein associated factor 6 ENCODES a protein that exhibits aryl hydrocarbon receptor binding (ortholog); DNA binding (ortholog); RNA polymerase II general transcription initiation factor activity (ortholog); INVOLVED IN DNA-templated transcription initiation (ortholog); mRNA transcription by RNA polymerase II (ortholog); negative regulation of cell cycle (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH Alazami-Yuan Syndrome (ortholog); autistic disorder (ortholog); Cornelia de Lange syndrome 1 (ortholog); FOUND IN cytosol (ortholog); MLL1 complex (ortholog); nucleoplasm (ortholog) NW_004955573 752646 759292 + 102003074 AGCD01075004;GBDF01052297;XM_005413754;XM_005413755 XP_005413811;XP_005413812 MODEL 9044067 pseudo LOC102021266 zinc finger CCHC-type and RNA-binding motif-containing protein 1 pseudogene NW_004955509 31706 32464 + 102021266 AGCD01065925 MODEL 8868484 ncrna LOC102028732 uncharacterized LOC102028732 NW_004955467 312108 325867 + 102028732 AGCD01051217;AGCD01051218;GBCB01016625;XR_263322 MODEL 9031711 ncrna LOC102005842 uncharacterized LOC102005842 NW_004955439 2255721 2292358 + 102005842 AGCD01035638;AGCD01035639;AGCD01035640;GBBH01163336;XR_001235211;XR_001235212;XR_261967 MODEL 8927838 protein-coding Ica1 islet cell autoantigen 1 ENCODES a protein that exhibits membrane curvature sensor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN regulation of protein-containing complex assembly (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); type 1 diabetes mellitus (ortholog); FOUND IN cytosol (ortholog); dendrite (ortholog); Golgi membrane (ortholog) NW_004955432 15136606 15297415 - 102029102 AGCD01031059;AGCD01031060;AGCD01031061;GBBH01051699;XM_005388097;XM_005388098;XM_005388099;XM_005388100;XM_005388101 XP_005388154;XP_005388155;XP_005388156;XP_005388157;XP_005388158 MODEL 8880262 protein-coding Vkorc1 vitamin K epoxide reductase complex subunit 1 ENCODES a protein that exhibits vitamin-K-epoxide reductase (warfarin-insensitive) activity (ortholog); vitamin-K-epoxide reductase (warfarin-sensitive) activity (ortholog); INVOLVED IN blood coagulation (ortholog); bone development (ortholog); peptidyl-glutamic acid carboxylation (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH Aortic Calcification (ortholog); Aortic Rupture (ortholog); blood coagulation disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955493 7928516 7931265 - 102028982 AGCD01061240;AGCD01061241;GBBH01034994;XM_005405300 XP_005405357 MODEL 39132862 snrna U6 U6 spliceosomal RNA 39133648 snrna U4 U4 spliceosomal RNA 8760439 pseudo LOC102005851 40S ribosomal protein S2-like NW_004955444 6571938 6576569 - 102005851 AGCD01038872;XR_262283 MODEL 8711142 protein-coding Nek9 NIMA related kinase 9 ENCODES a protein that exhibits protein kinase activator activity (ortholog); protein kinase binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN mitotic cell cycle (ortholog); regulation of mitotic cell cycle (ortholog); ASSOCIATED WITH ARTHROGRYPOSIS, PERTHES DISEASE, AND UPWARD GAZE PALSY (ortholog); cleft palate (ortholog); genetic disease (ortholog); FOUND IN centrosome (ortholog) NW_004955523 443832 483397 + 102011901 AGCD01068457;AGCD01068458;GBDF01189505;GBDJ01229358;XM_013507146 XP_013362600 MODEL 8937174 pseudo LOC102022573 centrosomal protein of 57 kDa-like NW_004955410 22742948 22744516 + 102022573 AGCD01011082 MODEL 8942093 protein-coding LOC102003305 olfactory receptor 4F4-like NW_004955614 319933 320880 - 102003305 AGCD01077239;XM_005414977 XP_005415034 MODEL 10171859 ncrna LOC106149164 uncharacterized LOC106149164 NW_004955438 4822759 4868730 + 106149164 AGCD01035048;AGCD01035049;AGCD01035050;AGCD01035051;AGCD01035052;AGCD01035053;AGCD01035054;GBCQ01086827;XR_001235154 MODEL 39132399 snrna U6 U6 spliceosomal RNA 9044461 protein-coding LOC102013464 cyclin-dependent kinase inhibitor 1C-like NW_004958204 12 1007 - 102013464 AGCD01081600;GBBH01041050;GBCQ01066908;XM_005415240 XP_005415297 MODEL 8993982 protein-coding LOC102008784 leukocyte immunoglobulin-like receptor subfamily A member 2 NW_004955567 1128512 1147473 + 102008784 AGCD01074460;GBDK01141152;XM_013509292;XM_013509293;XM_013509294;XM_013509295;XM_013509296;XM_013509297;XM_013509298;XM_013509299;XR_001232407 XP_013364746;XP_013364747;XP_013364748;XP_013364749;XP_013364750;XP_013364751;XP_013364752;XP_013364753 MODEL 8713180 pseudo LOC102005852 60S ribosomal protein L21 pseudogene NW_004955565 1247877 1249322 - 102005852 AGCD01074307 MODEL 39133650 snrna U4 U4 spliceosomal RNA 39132400 snrna U6 U6 spliceosomal RNA 8724917 protein-coding Nelfa negative elongation factor complex member A ENCODES a protein that exhibits chromatin binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN negative regulation of transcription elongation by RNA polymerase II (ortholog); positive regulation of protein modification process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH cherubism (ortholog); FOUND IN cytosol (ortholog); NELF complex (ortholog); nuclear body (ortholog) NW_004955514 1162993 1173278 - 102020367 AGCD01067037;GBCE01098373;XM_005408718 XP_005408775 MODEL 8808623 protein-coding Uri1 URI1 prefoldin like chaperone ENCODES a protein that exhibits chromatin binding (ortholog); phosphoprotein binding (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); cellular response to steroid hormone stimulus (ortholog); negative regulation of intrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH carcinoma (ortholog); Experimental Neoplasms (ortholog); Ovarian Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955468 7651061 7718968 - 102024210 AGCD01052003;AGCD01052004;AGCD01052005;AGCD01052006;GBDJ01275610;XM_013522516;XM_013522517;XM_013522518 XP_013377970;XP_013377971;XP_013377972 MODEL 8963431 ncrna LOC102013467 uncharacterized LOC102013467 NW_004955404 29028733 29038238 + 102013467 AGCD01003968;GBDF01118402;XR_001235108 MODEL 8964818 protein-coding LOC102009139 phosphatidylcholine transfer protein-like NW_004955451 6915885 6945860 - 102009139 AGCD01043218;AGCD01043219;AGCD01043220;GBDK01010809;XM_013519061 XP_013374515 MODEL 8727626 protein-coding LOC102017029 long-chain-fatty-acid--CoA ligase ACSBG2-like NW_004955495 3340322 3354576 - 102017029 AGCD01061848;AGCD01061849;AGCD01061850;GBDF01004370;XM_005405730;XM_013505357;XM_013505358 XP_005405787;XP_013360811;XP_013360812 MODEL 9064416 protein-coding Slc12a1 solute carrier family 12 member 1 ENCODES a protein that exhibits protein serine/threonine kinase binding (ortholog); sodium:potassium:chloride symporter activity (ortholog); INVOLVED IN cell volume homeostasis (ortholog); chloride transport (ortholog); diterpenoid metabolic process (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH Ataxia (ortholog); Bartter disease (ortholog); Bartter disease type 1 (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); extracellular exosome (ortholog) NW_004955409 5597033 5680009 - 102011509 AGCD01009320;AGCD01009321;GBCQ01007582;XM_005376699;XM_005376700;XM_005376701;XM_005376702 XP_005376756;XP_005376757;XP_005376758;XP_005376759 MODEL 9055542 ncrna LOC102006144 uncharacterized LOC102006144 NW_004955494 945399 951856 - 102006144 AGCD01061388;GBBH01099440;XR_001231328;XR_001231329;XR_001231330 MODEL 8727798 protein-coding Taf6l TATA-box binding protein associated factor 6 like ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN regulation of DNA-templated transcription (ortholog); regulation of somatic stem cell population maintenance (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); SAGA complex (ortholog) NW_004955599 453275 461571 - 102020863 AGCD01076649;AGCD01076650;GBCB01057066;GBDF01163264;XM_013510041 XP_013365495 MODEL 9057733 protein-coding LOC102005856 cytochrome P450 3A9-like NW_004955573 976002 1018678 - 102005856 AGCD01075011;AGCD01075012;AGCD01075013;GBCQ01036396;XM_005413764;XM_013509445 XP_005413821;XP_013364899 MODEL 8994755 protein-coding Samd12 sterile alpha motif domain containing 12 ASSOCIATED WITH familial adult myoclonic epilepsy 1 (ortholog); genetic disease (ortholog); hereditary multiple exostoses (ortholog) NW_004955417 24137340 24541572 - 102003765 AGCD01018453;AGCD01018454;AGCD01018455;AGCD01018456;AGCD01018457;AGCD01018458;AGCD01018459;AGCD01018460;AGCD01018461;AGCD01018462;AGCD01018463;GBDJ01028414;XM_005381901;XM_005381902;XM_005381903;XM_005381904;XM_013512785;XM_013512787;XM_013512788 XP_005381958;XP_005381959;XP_005381960;XP_005381961;XP_013368239;XP_013368241;XP_013368242 MODEL 8916014 protein-coding Spdye1 speedy/RINGO cell cycle regulator family member E1 ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955460 10914 53605 - 102009694 AGCD01048326;AGCD01048327;AGCD01048328;AGCD01048329;AGCD01048330;AGCD01048331;GBDF01051973;XM_005397708;XM_013521294;XM_013521295 XP_005397765;XP_013376748;XP_013376749 MODEL 10097637 protein-coding LOC106150001 cytohesin-3 NW_004955460 10842860 10843809 - 106150001 AGCD01048619;GBDK01183147;XM_013521143 XP_013376597 MODEL 39132864 snrna U6 U6 spliceosomal RNA 8887506 pseudo LOC102023674 leucine-rich repeat-containing protein 57 pseudogene NW_004955411 14171630 14172628 + 102023674 AGCD01011910 MODEL 10206398 ncrna LOC106146900 uncharacterized LOC106146900 NW_004955501 1963458 1964672 + 106146900 AGCD01064065;XR_001231525 MODEL 8764122 protein-coding Ppp1r26 protein phosphatase 1 regulatory subunit 26 ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog) NW_004955513 4039819 4046482 + 102029316 AGCD01066914;GBCE01037443;XM_005408477;XM_005408478 XP_005408534;XP_005408535 MODEL 8962793 pseudo LOC102018254 eukaryotic translation initiation factor 1 pseudogene NW_004955452 16336794 16337133 + 102018254 AGCD01044507 MODEL 9003519 pseudo LOC102027017 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955548 608537 631874 - 102027017 AGCD01072338 MODEL 9001204 protein-coding LOC102025986 glutathione S-transferase A-like NW_004955411 5147568 5305083 + 102025986 AGCD01011600;AGCD01011601;AGCD01011602;AGCD01011603;AGCD01011604;AGCD01011605;AGCD01011606;AGCD01011607;AGCD01011608;AGCD01011609;AGCD01011610;AGCD01011611;AGCD01011612;AGCD01011613;AGCD01011614;AGCD01011615;AGCD01011616;AGCD01011617;AGCD01011618;AGCD01011619;AGCD01011620;AGCD01011621;AGCD01011622;AGCD01011623;AGCD01011624;AGCD01011625;AGCD01011626;AGCD01011627;XM_005377650;XM_005377651 XP_005377707;XP_005377708 MODEL 8756407 ncrna LOC102020416 uncharacterized LOC102020416 NW_004955455 2040246 2047736 - 102020416 AGCD01045586;GBCB01023184;XR_262817 MODEL 8821036 protein-coding Scyl3 SCY1 like pseudokinase 3 ENCODES a protein that exhibits identical protein binding (ortholog); kinase activity (ortholog); INVOLVED IN inflammatory response (ortholog); neuron development (ortholog); protein localization (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955462 7443841 7477596 + 102008386 AGCD01049305;GBDF01279049;XM_005398176;XM_005398178;XM_005398179;XM_005398180;XM_005398181 XP_005398233;XP_005398235;XP_005398236;XP_005398237;XP_005398238 MODEL 8997740 protein-coding Specc1l sperm antigen with calponin homology and coiled-coil domains 1 like ENCODES a protein that exhibits beta-catenin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); adherens junction organization (ortholog); anterior neural tube closure (ortholog); ASSOCIATED WITH cleft palate (ortholog); Craniosynostosis Syndrome, Autosomal Recessive (ortholog); DiGeorge syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); cell-cell junction (ortholog); cytoplasm (ortholog) NW_004955455 7739105 7879489 + 102027269 AGCD01045862;AGCD01045863;AGCD01045864;AGCD01045865;AGCD01045866;GBDF01010265;XM_005396373;XM_005396374;XM_005396375;XM_005396376;XM_013520321 XP_005396430;XP_005396431;XP_005396432;XP_005396433;XP_013375775 MODEL 8721050 pseudo LOC102009927 centrin-3 pseudogene NW_004955467 10028525 10029023 + 102009927 AGCD01051543 MODEL 8934781 ncrna LOC102015261 uncharacterized LOC102015261 NW_004955592 702280 703610 - 102015261 AGCD01076321;GBCC01027024;XR_001232540 MODEL 8947893 protein-coding LOC102025991 putative olfactory receptor 8G3 pseudogene NW_004955412 24956591 24957488 + 102025991 AGCD01013132;AGCD01013133;XM_005378643 XP_005378700 MODEL 8800969 protein-coding Urm1 ubiquitin related modifier 1 ENCODES a protein that exhibits sulfur carrier activity (ortholog); INVOLVED IN tRNA thio-modification (ortholog); tRNA wobble uridine modification (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); Disease Progression (ortholog) NW_004955570 876487 894045 + 102025954 AGCD01074771;GBDF01118858;XM_005413542 XP_005413599 MODEL 8995498 protein-coding Klhl24 kelch like family member 24 INVOLVED IN intermediate filament organization (ortholog); protein autoubiquitination (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); cardiomyopathy (ortholog); congenital disorder of glycosylation Id (ortholog); FOUND IN adherens junction (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955420 23700030 23733021 - 102003028 AGCD01021254;GBCB01020479;XM_013513537 XP_013368991 MODEL 8772320 pseudo LOC102017032 suppressor of cytokine signaling 5-like NW_004955423 3083403 3085157 + 102017032 AGCD01023501 MODEL 9042336 protein-coding LOC102003022 tubulin alpha chain-like NW_004955483 457068 458303 + 102003022 AGCD01057616;XM_013503762 XP_013359216 MODEL 8751711 protein-coding Taf7 TATA-box binding protein associated factor 7 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); histone acetyltransferase binding (ortholog); histone H3K27me3 reader activity (ortholog); INVOLVED IN DNA-templated transcription initiation (ortholog); estrogen receptor signaling pathway (ortholog); mRNA transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (ortholog); male germ cell nucleus (ortholog); MLL1 complex (ortholog) NW_004955415 12453655 12456070 + 102009938 AGCD01016196;GBBH01033487;XM_005380736 XP_005380793 MODEL 8810400 ncrna LOC102007602 uncharacterized LOC102007602 NW_004955443 8592132 8720400 + 102007602 AGCD01038329;AGCD01038330;AGCD01038331;AGCD01038332;AGCD01038333;AGCD01038334;GBDI01032702;XR_262196;XR_262197 MODEL 8790883 protein-coding LOC102025994 olfactory receptor 10T2-like NW_004955468 10316621 10317565 - 102025994 AGCD01052075;XM_005400151 XP_005400208 MODEL 8777516 protein-coding Bin1 bridging integrator 1 ENCODES a protein that exhibits actin filament binding (ortholog); aspartic-type endopeptidase inhibitor activity (ortholog); GTPase binding (ortholog); INVOLVED IN endosome to lysosome transport (ortholog); lipid tube assembly (ortholog); muscle cell differentiation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); autosomal dominant nonsyndromic deafness 22 (ortholog); autosomal dominant thrombophilia due to protein C deficiency (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); axon terminus (ortholog) NW_004955459 3376149 3423157 + 102006639 AGCD01048015;GBDI01010869;XM_005397618;XM_005397619;XM_005397620;XM_005397621;XM_005397622;XM_005397623;XM_005397624;XM_005397625;XM_005397626;XM_005397627;XM_005397628;XM_005397629;XM_005397630;XM_005397631;XM_005397632;XM_005397633;XM_005397634;XM_013521077 XP_005397675;XP_005397676;XP_005397677;XP_005397678;XP_005397679;XP_005397680;XP_005397681;XP_005397682;XP_005397683;XP_005397684;XP_005397685;XP_005397686;XP_005397687;XP_005397688;XP_005397689;XP_005397690;XP_005397691;XP_013376531 MODEL 8830637 protein-coding Lpcat3 lysophosphatidylcholine acyltransferase 3 ENCODES a protein that exhibits 1-acylglycerophosphocholine O-acyltransferase activity (ortholog); 1-acylglycerophosphoethanolamine O-acyltransferase activity (ortholog); 1-acylglycerophosphoserine O-acyltransferase activity (ortholog); INVOLVED IN chylomicron assembly (ortholog); endoplasmic reticulum membrane organization (ortholog); intestinal stem cell homeostasis (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); Klippel-Feil syndrome 3 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955413 4571028 4605097 - 102011100 AGCD01013621;GBDK01076822;XM_005378854 XP_005378911 MODEL 8902660 protein-coding LOC102021267 olfactory receptor 5AL1-like NW_004955511 1538367 1539479 + 102021267 AGCD01066371;XM_005408235 XP_005408292 MODEL 39133593 mirna MIR455 microRNA 455 9058903 protein-coding Taf7l TATA-box binding protein associated factor 7 like INVOLVED IN flagellated sperm motility (ortholog); spermatid development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); developmental and epileptic encephalopathy 9 (ortholog); FOUND IN chromocenter (ortholog); cytoplasm (ortholog); male germ cell nucleus (ortholog) NW_004955503 7429876 7451051 - 102024933 AGCD01064790;AGCD01064791;GBDK01149160;XM_005406947;XM_005406949;XM_013505851 XP_005407004;XP_005407006;XP_013361305 MODEL 8714964 protein-coding Dgka diacylglycerol kinase alpha ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); kinase activity (ortholog); lipid binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); glycerolipid metabolic process (ortholog); lipid phosphorylation (ortholog); PARTICIPATES IN D-glycericacidemia pathway; familial lipoprotein lipase deficiency pathway; glycerol kinase deficiency pathway; FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955458 3517519 3544651 + 102024532 AGCD01047314;AGCD01047315;AGCD01047316;AGCD01047317;GBCE01166881;XM_005397269;XM_013520902;XM_013520903;XM_013520904;XM_013520905 XP_005397326;XP_013376356;XP_013376357;XP_013376358;XP_013376359 MODEL 8810937 ncrna LOC102024597 uncharacterized LOC102024597 NW_004955511 2796192 2798196 + 102024597 AGCD01066428;GBDF01194807;XR_264420 MODEL 39133719 mirna MIR484 microRNA 484 8710415 protein-coding Ica1l islet cell autoantigen 1 like INVOLVED IN spermatid development (ortholog); ASSOCIATED WITH autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); common variable immunodeficiency 1 (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955457 11983201 12085870 + 102005670 AGCD01046997;AGCD01046998;AGCD01046999;GBDF01125399;XM_005397050;XM_005397051;XM_005397052;XM_005397053;XM_005397054 XP_005397107;XP_005397108;XP_005397109;XP_005397110;XP_005397111 MODEL 9003786 pseudo LOC102006151 cyclin-dependent-like kinase 5 pseudogene NW_004955503 2378754 2379747 - 102006151 AGCD01064606 MODEL 8820318 protein-coding Sdad1 SDA1 domain containing 1 INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); ASSOCIATED WITH progressive myoclonus epilepsy (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955433 690305 717737 - 102008446 AGCD01031335;GBBH01025561;XM_005388162 XP_005388219 MODEL 9064091 ncrna LOC102025046 uncharacterized LOC102025046 NW_004955542 2323689 2331319 - 102025046 AGCD01071518;GBBH01066552;XR_264859 MODEL 405822140 mirna MIR487B microRNA 487b 10062672 ncrna LOC106150002 uncharacterized LOC106150002 NW_004955460 8243549 8250894 - 106150002 AGCD01048513;XR_001236512 MODEL 8868600 ncrna LOC102006153 uncharacterized LOC102006153 NW_004955511 3567813 3569808 - 102006153 AGCD01066468;GBDF01146056;XR_264424 MODEL 8846217 protein-coding Samd13 sterile alpha motif domain containing 13 NW_004955423 9531538 9574312 - 102003979 AGCD01023662;GBDF01083942;XM_005385162;XM_005385163;XM_005385164;XM_013514573;XM_013514574 XP_005385219;XP_005385220;XP_005385221;XP_013370027;XP_013370028 MODEL 8977603 protein-coding Znf385c zinc finger protein 385C NW_004955451 16151562 16184179 - 102009905 AGCD01043656;AGCD01043657;AGCD01043658;GBCB01101085;XM_005394429;XM_013519286 XP_005394486;XP_013374740 MODEL 8796143 protein-coding Klhl25 kelch like family member 25 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN negative regulation of fatty acid biosynthetic process (ortholog); positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (ortholog); positive regulation of fatty acid oxidation (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955416 18965966 18991099 + 102012644 AGCD01017413;AGCD01017414;GBBH01214843;GBDI01188510;XM_013512646 XP_013368100 MODEL 8759997 protein-coding Uroc1 urocanate hydratase 1 ENCODES a protein that exhibits urocanate hydratase activity (ortholog); INVOLVED IN L-histidine catabolic process (ortholog); PARTICIPATES IN histidine metabolic pathway; histidinemia pathway; ASSOCIATED WITH alkaptonuria (ortholog); Ataxia (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytosol (ortholog) NW_004955421 21734910 21765754 - 102020255 AGCD01022117;GBDF01229852;XM_005383834;XM_013513807;XM_013513808 XP_005383891;XP_013369261;XP_013369262 MODEL 9063223 ncrna LOC102017891 uncharacterized LOC102017891 NW_004955424 10729774 10746212 - 102017891 AGCD01024526;GBDK01082355;XR_001234189;XR_001234190;XR_001234191;XR_001234192;XR_001234193;XR_001234194;XR_001234195;XR_001234196;XR_001234197 MODEL 8866243 pseudo LOC102006157 spermatogenesis-associated protein 2 pseudogene NW_004955433 1909956 1910500 - 102006157 AGCD01031373 MODEL 8946419 protein-coding LOC102009144 complement receptor type 1 NW_004955406 42927757 42997196 + 102009144 AGCD01006720;AGCD01006721;AGCD01006722;AGCD01006723;GBBH01063618;GBCE01049944;XM_013503302 XP_013358756 MODEL 8868131 ncrna LOC102021271 uncharacterized LOC102021271 NW_004955433 9333586 9352335 + 102021271 AGCD01031611;GBDF01224018;XR_001234712;XR_261576 MODEL 8725146 protein-coding Spef1 sperm flagellar 1 ENCODES a protein that exhibits actin binding (ortholog); microtubule binding (ortholog); INVOLVED IN axonemal central apparatus assembly (ortholog); cilium movement (ortholog); filopodium assembly (ortholog); ASSOCIATED WITH Huntington's disease-like 1 (ortholog); Inosine Triphosphatase Deficiency (ortholog); pantothenate kinase-associated neurodegeneration (ortholog); FOUND IN 9+2 motile cilium (ortholog); apical plasma membrane (ortholog); axonemal central apparatus (ortholog) NW_004955415 14620593 14626049 - 102030067 AGCD01016301;GBDI01001315;XM_005380802;XM_013512284 XP_005380859;XP_013367738 MODEL 9066958 protein-coding Tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 ENCODES a protein that exhibits dolichyl-phosphate-mannose-protein mannosyltransferase activity (ortholog); INVOLVED IN bud outgrowth involved in lung branching (ortholog); cell differentiation (ortholog); lung alveolus development (ortholog); ASSOCIATED WITH genetic disease (ortholog); Joubert syndrome 1 (ortholog); lissencephaly (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955405 25607134 25646050 + 102011621 AGCD01005177;GBCE01127255;XM_005374428;XM_013518135;XM_013518136 XP_005374485;XP_013373589;XP_013373590 MODEL 8867853 pseudo LOC102006158 nucleobindin-2 pseudogene NW_004955434 753047 754103 - 102006158 AGCD01032038 MODEL 8975320 protein-coding Urod uroporphyrinogen decarboxylase ENCODES a protein that exhibits ferrous iron binding (ortholog); uroporphyrinogen decarboxylase activity (ortholog); INVOLVED IN cellular response to arsenic-containing substance (ortholog); heme A biosynthetic process (ortholog); heme B biosynthetic process (ortholog); PARTICIPATES IN acute intermittent porphyria pathway; erythropoietic porphyria pathway; heme biosynthetic pathway; ASSOCIATED WITH breast cancer (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955464 13226271 13228908 - 102005684 AGCD01050264;GBBH01092017;GBCQ01038545;XM_013521739 XP_013377193 MODEL 9058367 ncrna LOC102003306 uncharacterized LOC102003306 NW_004955403 49841723 49842763 + 102003306 AGCD01002951;GBDF01153033;XR_259250 MODEL 8817518 pseudo LOC102022940 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4-like NW_004955495 652425 659973 + 102022940 AGCD01061645;AGCD01061646 MODEL 8735079 ncrna LOC102012261 uncharacterized LOC102012261 NW_004955450 975310 979893 + 102012261 AGCD01042346;GBDF01286154;XR_262513 MODEL 8878194 protein-coding Taf8 TATA-box binding protein associated factor 8 INVOLVED IN DNA-templated transcription open complex formation (ortholog); inner cell mass cell proliferation (ortholog); maintenance of protein location in nucleus (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH infantile Refsum disease (ortholog); microcephaly (ortholog); NEURODEVELOPMENTAL DISORDER WITH SEVERE MOTOR IMPAIRMENT, ABSENT LANGUAGE, CEREBRAL HYPOMYELINATION, AND BRAIN ATROPHY (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955437 8317437 8328544 + 102020049 AGCD01034485;AGCD01034486;GBDK01233514;XM_005389711;XM_005389713;XM_013516780;XM_013516781 XP_005389768;XP_005389770;XP_013372234;XP_013372235 MODEL 8803940 protein-coding Tex13c TEX13 family member C ASSOCIATED WITH autistic disorder (ortholog) NW_004955473 9425572 9428326 - 102028852 AGCD01054074;GBDF01079065;XM_005401296 XP_005401353 MODEL 8709611 ncrna LOC102027019 uncharacterized LOC102027019 NW_004955445 7961948 7972321 - 102027019 AGCD01039557;GBDK01005281;XR_001235604;XR_001235605;XR_001235606;XR_262314;XR_262316;XR_262317 MODEL 9016186 pseudo LOC102018255 ubiquitin-60S ribosomal protein L40 pseudogene NW_004955405 9748083 9748858 - 102018255 AGCD01004792 MODEL 8791905 ncrna LOC102013469 uncharacterized LOC102013469 NW_004955405 26349233 26375138 + 102013469 AGCD01005201;GBDK01414416;XR_259396 MODEL 9021463 ncrna LOC102020417 uncharacterized LOC102020417 NW_004955407 4599104 4604564 + 102020417 AGCD01006887;XR_259549 MODEL 8931245 protein-coding Bin2 bridging integrator 2 ENCODES a protein that exhibits phospholipid binding (ortholog); INVOLVED IN cell chemotaxis (ortholog); phagocytosis, engulfment (ortholog); plasma membrane tubulation (ortholog); FOUND IN phagocytic cup (ortholog); plasma membrane (ortholog); podosome (ortholog) NW_004955547 1774330 1798031 - 102016523 AGCD01072246;GBDF01006942;GBDK01146360;XM_013508468 XP_013363922 MODEL 8763015 protein-coding Samd14 sterile alpha motif domain containing 14 ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); osteogenesis imperfecta type 1 (ortholog); trichodontoosseous syndrome (ortholog) NW_004955451 11536639 11547402 + 102016012 AGCD01043358;AGCD01043359;GBDF01240504;GBDJ01056730;XM_013519104 XP_013374558 MODEL 10332444 protein-coding Taf9 TATA-box binding protein associated factor 9 ENCODES a protein that exhibits ATPase binding (ortholog); C2H2 zinc finger domain binding (ortholog); DNA binding (ortholog); INVOLVED IN box C/D snoRNP assembly (ortholog); mRNA transcription by RNA polymerase II (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN de novo purine biosynthetic pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN MLL1 complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955575 74506 76272 - 106146233 AGCD01075200;XM_013509601 XP_013365055 MODEL 8839520 protein-coding Lpcat4 lysophosphatidylcholine acyltransferase 4 ENCODES a protein that exhibits 1-acylglycerophosphocholine O-acyltransferase activity (ortholog); 1-acylglycerophosphoethanolamine O-acyltransferase activity (ortholog); 1-acylglycerophosphoserine O-acyltransferase activity (ortholog); INVOLVED IN phosphatidylcholine acyl-chain remodeling (ortholog); phosphatidylethanolamine acyl-chain remodeling (ortholog); phosphatidylserine acyl-chain remodeling (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); hypertrophic cardiomyopathy 11 (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955416 251057 257379 + 102003235 AGCD01016791;GBBH01034974;GBBH01034975;XM_013512655 XP_013368109 MODEL 8716148 ncrna LOC102009929 uncharacterized LOC102009929 NW_004955468 11697494 11712294 + 102009929 AGCD01052137;GBBH01041129;XR_001236933;XR_263414;XR_263415 MODEL 8721272 pseudo LOC102017894 protein FAM69B-like NW_004955425 7507821 7533856 + 102017894 AGCD01025387 MODEL 8759302 pseudo LOC102022574 eukaryotic translation initiation factor 4B pseudogene NW_004955464 1895737 1897508 + 102022574 AGCD01049957;XR_263224 MODEL 8731531 protein-coding Bin3 bridging integrator 3 INVOLVED IN myoblast migration involved in skeletal muscle regeneration (ortholog); protein localization (ortholog); regulation of lamellipodium assembly (ortholog); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); FOUND IN actin cytoskeleton (ortholog) NW_004955403 46042885 46085029 - 102013997 AGCD01002849;GBDF01085029;XM_005373686 XP_005373743 MODEL 8951351 pseudo LOC102008786 coiled-coil domain-containing protein 152-like NW_004955569 1719680 1720876 - 102008786 AGCD01074678 MODEL 8881599 pseudo LOC102024598 serine/threonine-protein kinase PLK4-like NW_004955429 19408775 19420812 + 102024598 AGCD01028952 MODEL 9037698 protein-coding Samd15 sterile alpha motif domain containing 15 ASSOCIATED WITH hereditary sensory and autonomic neuropathy type 1C (ortholog) NW_004955438 1273054 1283424 + 102014947 AGCD01034977;GBDF01081089;XM_005390196;XM_005390199;XM_013517155 XP_005390253;XP_005390256;XP_013372609 MODEL 8891365 ncrna LOC102009931 uncharacterized LOC102009931 NW_004955469 1231307 1236093 - 102009931 AGCD01052250;XR_263423 MODEL 8746088 ncrna LOC102006159 uncharacterized LOC102006159 NW_004955526 3480118 3482226 - 102006159 AGCD01069336;GBDF01015650;XR_264662 MODEL 39131404 protein-coding SDC1 syndecan 1 9049882 protein-coding Erbin erbb2 interacting protein ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN cellular response to tumor necrosis factor (ortholog); negative regulation of monocyte chemotactic protein-1 production (ortholog); negative regulation of NF-kappaB transcription factor activity (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Neurodevelopmental Disorders (ortholog); prostate cancer (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell junction (ortholog); cytoplasm (ortholog) NW_004955446 3046268 3151796 - 102017075 AGCD01039998;AGCD01039999;AGCD01040000;AGCD01040001;AGCD01040002;GBBH01209360;GBDJ01086651;XM_013518424;XM_013518425;XM_013518427;XM_013518428;XM_013518429;XM_013518430;XM_013518431;XM_013518432 XP_013373878;XP_013373879;XP_013373881;XP_013373882;XP_013373883;XP_013373884;XP_013373885;XP_013373886 MODEL 8988136 pseudo LOC102003307 uncharacterized protein C12orf31 homolog pseudogene NW_004955451 1129592 1137451 - 102003307 AGCD01042960 MODEL 10277319 ncrna LOC106150003 uncharacterized LOC106150003 NW_004955460 8104434 8107046 + 106150003 AGCD01048512;XR_001236513 MODEL 8781223 ncrna LOC102007605 uncharacterized LOC102007605 NW_004955447 15774756 15787240 - 102007605 AGCD01041068;AGCD01041069;GBDF01126660;XR_001235716;XR_001235717 MODEL 8948157 protein-coding Sdc1 syndecan 1 ENCODES a protein that exhibits cargo receptor activity (ortholog); identical protein binding (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); myoblast development (ortholog); positive regulation of exosomal secretion (ortholog); PARTICIPATES IN altered melanocortin system pathway; melanocortin system pathway; obesity pathway; ASSOCIATED WITH COVID-19 (ortholog); familial hyperlipidemia (ortholog); Hodgkin's lymphoma (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955469 2762696 2773697 - 102012750 AGCD01052281;GBDI01076441;XM_013522561 XP_013378015 MODEL 9007218 protein-coding Tex14 testis expressed 14, intercellular bridge forming factor ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); cellular response to leukemia inhibitory factor (ortholog); intercellular bridge organization (ortholog); ASSOCIATED WITH Fanconi anemia complementation group O (ortholog); hereditary breast ovarian cancer syndrome (ortholog); Joubert syndrome 1 (ortholog); FOUND IN intercellular bridge (ortholog); kinetochore (ortholog); midbody (ortholog) NW_004955451 4206114 4296969 + 102016657 AGCD01043100;AGCD01043101;AGCD01043102;AGCD01043103;AGCD01043104;AGCD01043105;AGCD01043106;GBDF01048867;GBDK01377318;XM_013519211 XP_013374665 MODEL 8954500 ncrna LOC102015270 uncharacterized LOC102015270 NW_004955451 13413208 13414369 + 102015270 AGCD01043475;GBDF01266060;XR_001235973 MODEL 8755760 pseudo LOC102020419 protein FAM45A pseudogene NW_004955455 12666202 12672993 + 102020419 AGCD01046047 MODEL 10095788 ncrna LOC106150004 uncharacterized LOC106150004 NW_004955460 13302274 13310360 - 106150004 AGCD01048680;XR_001236518 MODEL 10132747 ncrna LOC106149165 uncharacterized LOC106149165 NW_004955404 21583697 21618058 + 106149165 AGCD01003730;XR_001235155 MODEL 8806078 protein-coding Slc12a2 solute carrier family 12 member 2 ENCODES a protein that exhibits ammonium channel activity (ortholog); chloride:monoatomic cation symporter activity (ortholog); Hsp90 protein binding (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); branching involved in mammary gland duct morphogenesis (ortholog); cell volume homeostasis (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); autism spectrum disorder (ortholog); autosomal dominant nonsyndromic deafness 78 (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955415 1138297 1219241 + 102023689 AGCD01015863;GBCE01002817;GBCE01002818;XM_005381114 XP_005381171 MODEL 9062219 pseudo LOC102009153 stereocilin-like NW_004955409 22950828 22960330 - 102009153 AGCD01010048;AGCD01010049 MODEL 8703353 protein-coding LOC102023989 ubiquitin-conjugating enzyme E2 variant 2-like NW_004955462 10852436 10854575 + 102023989 AGCD01049373;XM_005398313 XP_005398370 MODEL 8991802 pseudo LOC102020421 homeobox-containing protein 1 pseudogene NW_004955407 38284115 38332185 - 102020421 AGCD01007803;AGCD01007804 MODEL 8776752 protein-coding Lpgat1 lysophosphatidylglycerol acyltransferase 1 ENCODES a protein that exhibits 2-acylglycerol O-acyltransferase activity (ortholog); 2-acylglycerophosphocholine O-acyltransferase activity (ortholog); lysophosphatidylethanolamine acyltransferase activity (ortholog); INVOLVED IN phosphatidylethanolamine acyl-chain remodeling (ortholog); positive regulation of fatty acid biosynthetic process (ortholog); triglyceride biosynthetic process (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); Weight Gain (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955406 5441923 5506575 + 102024422 AGCD01005725;GBDF01084224;GBDJ01317991;XM_013520199 XP_013375653 MODEL 8861721 pseudo LOC102017895 protein kinase C iota type pseudogene NW_004955501 2865479 2868071 - 102017895 AGCD01064096 MODEL 10257898 protein-coding LOC106150007 uncharacterized LOC106150007 NW_004955460 8648783 8652074 + 106150007 AGCD01048528;XM_013521208;XR_001236519 XP_013376662 MODEL 8955098 protein-coding Tmtc4 transmembrane O-mannosyltransferase targeting cadherins 4 ENCODES a protein that exhibits ATPase binding (ortholog); dolichyl-phosphate-mannose-protein mannosyltransferase activity (ortholog); INVOLVED IN endoplasmic reticulum unfolded protein response (ortholog); outer hair cell apoptotic process (ortholog); positive regulation of endoplasmic reticulum calcium ion concentration (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Autosomal Recessive Nonsyndromic Deafness 122 (ortholog); holoprosencephaly (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955404 10213186 10266581 + 102006200 AGCD01003377;GBCE01041273;GBDF01110575;XM_013515999 XP_013371453 MODEL 8733190 ncrna LOC102022942 uncharacterized LOC102022942 NW_004955424 13338953 13339764 - 102022942 AGCD01024631;XR_261061 MODEL 10178244 ncrna LOC106149166 uncharacterized LOC106149166 NW_004955404 2714780 2723643 + 106149166 AGCD01003264;XR_001235156 MODEL 8707053 protein-coding LOC102028733 putative uncharacterized protein FLJ38447 NW_004955467 9024888 9027668 + 102028733 AGCD01051481;GBDI01045379;XM_005399449 XP_005399506 MODEL 8804133 ncrna LOC102006162 uncharacterized LOC102006162 NW_004955534 59116 62830 + 102006162 AGCD01070434;AGCD01070435;XR_264754 MODEL 8768970 protein-coding Nelfb negative elongation factor complex member B INVOLVED IN cell population proliferation (ortholog); negative regulation of stem cell differentiation (ortholog); negative regulation of transcription elongation by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN cytoplasm (ortholog); NELF complex (ortholog); nucleoplasm (ortholog) NW_004955513 5248190 5261018 + 102012791 AGCD01066964;GBDF01086073;XM_005408612 XP_005408669 MODEL 8796659 protein-coding Vkorc1l1 vitamin K epoxide reductase complex subunit 1 like 1 ENCODES a protein that exhibits vitamin-K-epoxide reductase (warfarin-sensitive) activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); peptidyl-glutamic acid carboxylation (ortholog); vitamin K metabolic process (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); prostate cancer (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955456 8316107 8374898 + 102004563 AGCD01046473;GBDJ01344348;XM_005396706;XM_013520596 XP_005396763;XP_013376050 MODEL 8994866 protein-coding Znf385d zinc finger protein 385D ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); substance-related disorder (ortholog) NW_004955430 13391614 13695569 - 102007359 AGCD01029531;AGCD01029532;AGCD01029533;AGCD01029534;AGCD01029535;AGCD01029536;AGCD01029537;AGCD01029538;GBDJ01388541;XM_005387469;XM_005387471;XM_013515708 XP_005387526;XP_005387528;XP_013371162 MODEL 8761316 protein-coding LOC102009160 putative olfactory receptor 2W6 NW_004955465 13945042 13945998 - 102009160 AGCD01050638;XM_005399018 XP_005399075 MODEL 39131488 protein-coding KLHL25 kelch like family member 25 8737315 pseudo LOC102013471 poly(rC)-binding protein 2 pseudogene NW_004955405 1213036 1219942 - 102013471 AGCD01004598 MODEL 8971349 protein-coding LOC102027021 zinc finger protein 709-like NW_004955569 224662 244117 + 102027021 AGCD01074566;AGCD01074567;AGCD01074568;AGCD01074569;XM_013509356 XP_013364810 MODEL 8767657 pseudo LOC102005858 40S ribosomal protein S4-like NW_004955575 415119 417705 + 102005858 AGCD01075221 MODEL 8940395 protein-coding LOC102019488 dehydrogenase/reductase SDR family member 7-like NW_004955466 9449071 9476610 + 102019488 AGCD01051041;GBCQ01037453;XM_005399182 XP_005399239 MODEL 39132865 snrna U6 U6 spliceosomal RNA 10309692 ncrna LOC106146901 uncharacterized LOC106146901 NW_004955407 42732512 42734823 - 106146901 AGCD01007895;GBDI01164294;XR_001231527 MODEL 39133651 snrna U4 U4 spliceosomal RNA 39131391 protein-coding KLHL26 kelch like family member 26 8935044 protein-coding LOC102027022 uncharacterized LOC102027022 NW_004955445 8022171 8024206 + 102027022 AGCD01039557;GBDF01026394;XM_013518239 XP_013373693 MODEL 9068130 ncrna LOC102015271 uncharacterized LOC102015271 NW_004955403 46127900 46135618 + 102015271 AGCD01002850;GBBH01170811;XR_001233899;XR_259244 MODEL 8862625 protein-coding LOC102021272 mitochondrial amidoxime reducing component 2 NW_004955520 3003740 3026832 - 102021272 AGCD01068088;GBBH01189979;GBCB01025704;XM_013507064 XP_013362518 MODEL 8714643 protein-coding Znf394 zinc finger protein 394 ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955460 15159737 15167439 - 102011414 AGCD01048769;GBDJ01019048;XM_005397951 XP_005398008 MODEL 9056927 ncrna LOC102003024 uncharacterized LOC102003024 NW_004955419 21702352 21717956 + 102003024 AGCD01020282;GBDF01056389;XR_001233586;XR_001233587;XR_001233588;XR_001233589;XR_001233590;XR_001233591;XR_260649 MODEL 8855751 protein-coding Ppp1r27 protein phosphatase 1 regulatory subunit 27 ENCODES a protein that exhibits phosphatase binding (ortholog) NW_004955506 1327073 1328187 + 102026238 AGCD01065256;GBCB01002479;XM_005407253;XM_005407254 XP_005407310;XP_005407311 MODEL 8899200 protein-coding Lactbl1 lactamase beta like 1 ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog) NW_004955452 3006140 3023205 - 102013579 AGCD01043909;AGCD01043910;GBDF01170835;XM_005395293 XP_005395350 MODEL 8804901 ncrna LOC102008788 uncharacterized LOC102008788 NW_004955446 7907980 7940327 - 102008788 AGCD01040132;AGCD01040133;GBBH01101806;XR_001235659;XR_001235660;XR_001235661;XR_001235662;XR_001235663;XR_262390 MODEL 39132869 snrna U6 U6 spliceosomal RNA 9012026 ncrna LOC102020424 uncharacterized LOC102020424 NW_004955408 24109963 24111698 - 102020424 AGCD01008594;GBDF01187517;XR_001232410 MODEL 10243479 ncrna LOC106150008 uncharacterized LOC106150008 NW_004955460 13641877 13643314 + 106150008 AGCD01048713;GBCC01034086;XR_001236521 MODEL 8735422 protein-coding Klhl26 kelch like family member 26 ASSOCIATED WITH Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog) NW_004955524 2947402 2964192 - 102028331 AGCD01068845;GBCB01057741;XM_005409590;XM_013507308 XP_005409647;XP_013362762 MODEL 8733305 protein-coding Sh3bp4 SH3 domain binding protein 4 ENCODES a protein that exhibits GDP-dissociation inhibitor activity (ortholog); identical protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN amino acid import (ortholog); cellular response to amino acid stimulus (ortholog); negative regulation of cell growth (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog) NW_004955453 1387954 1425268 - 102028930 AGCD01044612;GBDK01141681;XM_005395325;XM_005395328;XM_005395329 XP_005395382;XP_005395385;XP_005395386 MODEL 39132872 snrna U6 U6 spliceosomal RNA 8710761 ncrna LOC102023675 uncharacterized LOC102023675 NW_004955465 5504102 5599648 - 102023675 AGCD01050430;AGCD01050431;GBDF01277920;XR_263237 MODEL 8907847 protein-coding Taf9b TATA-box binding protein associated factor 9b INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of cell growth (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN transcription factor TFIID complex (ortholog); transcription factor TFTC complex (ortholog) NW_004955557 1607589 1617748 - 102021713 AGCD01073300;GBCQ01153750;XM_005412631 XP_005412688 MODEL 10305060 ncrna LOC106150009 uncharacterized LOC106150009 NW_004955460 13690622 13695162 - 106150009 AGCD01048718;GBDK01350798;XR_001236522 MODEL 8734870 protein-coding Sdc2 syndecan 2 ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN dendrite morphogenesis (ortholog); positive regulation of cell adhesion (ortholog); positive regulation of epithelial cell migration (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; syndecan signaling pathway; ASSOCIATED WITH cleft lip (ortholog); cleft palate (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN glutamatergic synapse (ortholog); neuronal cell body (ortholog); plasma membrane (ortholog) NW_004955417 12462354 12563374 + 102006129 AGCD01018162;GBCQ01035364;XM_005381834;XM_005381835 XP_005381891;XP_005381892 MODEL 8720611 pseudo LOC102019496 60S ribosomal protein L7a pseudogene NW_004955414 25104299 25108383 + 102019496 AGCD01015573;AGCD01015574 MODEL 39132876 snrna U6 U6 spliceosomal RNA 8929206 protein-coding LOC102005859 RE1-silencing transcription factor NW_004955447 14183770 14196122 - 102005859 AGCD01040989;GBBH01193455;GBCE01108856;XM_013518551 XP_013374005 MODEL 8850879 protein-coding Samd3 sterile alpha motif domain containing 3 NW_004955436 11017336 11074020 - 102016743 AGCD01033804;AGCD01033805;AGCD01033806;AGCD01033807;GBDF01114641;XM_005389195 XP_005389252 MODEL 8834948 protein-coding LOC102021273 olfactory receptor 2J3-like NW_004955524 178638 179582 - 102021273 AGCD01068669;XM_005409656 XP_005409713 MODEL 8955964 pseudo LOC102019498 eukaryotic peptide chain release factor subunit 1-like NW_004955415 4586723 4588014 + 102019498 AGCD01015975 MODEL 39132877 snrna U6 U6 spliceosomal RNA 8858893 ncrna LOC102022948 uncharacterized LOC102022948 NW_004955506 5750075 5754259 + 102022948 AGCD01065386;GBDF01225574;XR_001231604 MODEL 8715958 protein-coding Tmub1 transmembrane and ubiquitin like domain containing 1 INVOLVED IN ERAD pathway (ortholog); postsynaptic neurotransmitter receptor internalization (ortholog); ASSOCIATED WITH lethal congenital glycogen storage disease of heart (ortholog); long QT syndrome (ortholog); FOUND IN postsynaptic recycling endosome membrane (ortholog) NW_004955491 5518199 5520743 - 102004076 AGCD01060486;GBDJ01125606;XM_005404815;XM_005404816 XP_005404872;XP_005404873 MODEL 8741591 protein-coding Znf395 zinc finger protein 395 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955403 50761334 50772286 - 102013136 AGCD01002969;GBBH01207667;GBDI01220782;XM_013514339 XP_013369793 MODEL 10063055 ncrna LOC106149167 uncharacterized LOC106149167 NW_004955438 17076212 17083659 + 106149167 AGCD01035430;GBDF01305300;XR_001235157;XR_001235158 MODEL 8818196 protein-coding Nelfcd negative elongation factor complex member C/D INVOLVED IN negative regulation of transcription elongation by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 8 (ortholog); prostate cancer (ortholog); FOUND IN NELF complex (ortholog); nucleus (ortholog) NW_004955445 597826 610134 - 102019750 AGCD01039320;GBCE01170940;XM_013518266;XM_013518267 XP_013373720;XP_013373721 MODEL 8708009 pseudo LOC102019505 AP-3 complex subunit sigma-1 pseudogene NW_004955419 14065813 14066477 + 102019505 AGCD01020010 MODEL 8759121 protein-coding Sh3bp5 SH3 domain binding protein 5 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); protein kinase inhibitor activity (ortholog); INVOLVED IN intracellular signal transduction (ortholog); negative regulation of protein kinase activity (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); mitochondrion (ortholog); nuclear body (ortholog) NW_004955430 2251544 2266166 + 102014074 AGCD01029161;AGCD01029162;GBCB01005483;XM_005387310 XP_005387367 MODEL 8989057 protein-coding Xkr7 XK related 7 FOUND IN plasma membrane (ortholog) NW_004955422 29015901 29024414 - 102006042 AGCD01023377;GBDF01135049;XM_013513843 XP_013369297 MODEL 8867659 protein-coding LOC102024600 olfactory receptor 4C15-like NW_004955511 234273 235214 + 102024600 AGCD01066325;XM_005408183 XP_005408240 MODEL 8739661 protein-coding Slc12a3 solute carrier family 12 member 3 ENCODES a protein that exhibits enzyme binding (ortholog); protein serine/threonine kinase binding (ortholog); sodium ion transmembrane transporter activity (ortholog); INVOLVED IN chloride transport (ortholog); renal sodium ion absorption (ortholog); response to aldosterone (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH aortic disease (ortholog); Bardet-Biedl syndrome (ortholog); Bartter disease (ortholog); FOUND IN apical plasma membrane (ortholog); cytosol (ortholog); extracellular exosome (ortholog) NW_004955433 14553752 14588317 + 102019523 AGCD01031722;GBCQ01012135;XM_005388362;XM_005388363 XP_005388419;XP_005388420 MODEL 8797486 protein-coding Nelfe negative elongation factor complex member E ENCODES a protein that exhibits chromatin binding (ortholog); mRNA binding (ortholog); RNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); negative regulation of transcription elongation by RNA polymerase II (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); trichohepatoenteric syndrome (ortholog); FOUND IN chromatin (ortholog); NELF complex (ortholog); nuclear body (ortholog) NW_004955437 467018 473084 - 102006071 AGCD01034137;GBDF01128156;XM_005389401 XP_005389458 MODEL 8707533 protein-coding LOC102027026 putative olfactory receptor 14L1 NW_004955581 860614 863806 + 102027026 AGCD01075699;XM_005414272 XP_005414329 MODEL 8858689 protein-coding Tafa1 TAFA chemokine like family member 1 ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN neuroblast differentiation (ortholog); regulation of neuroblast proliferation (ortholog); regulation of signaling receptor activity (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular space (ortholog) NW_004955421 19249435 19734903 - 102014679 AGCD01022070;AGCD01022071;AGCD01022072;AGCD01022073;AGCD01022074;AGCD01022075;AGCD01022076;AGCD01022077;AGCD01022078;GBDK01272788;XM_005383817;XM_005383818 XP_005383874;XP_005383875 MODEL 8942190 protein-coding LOC102007606 prolactin-like NW_004955576 1119907 1125387 + 102007606 AGCD01075360;GBCQ01002340;XM_005413941 XP_005413998 MODEL 8747775 protein-coding Sh3bp5l SH3 binding domain protein 5 like ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog) NW_004955418 29884660 29893611 - 102019063 AGCD01019488;GBDF01276737;XM_005382328;XM_013513008 XP_005382385;XP_013368462 MODEL 8969865 pseudo LOC102028735 adrenodoxin-like NW_004955413 9248941 9254022 - 102028735 AGCD01013902 MODEL 8749792 protein-coding Lad1 ladinin 1 ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN actin cytoskeleton (ortholog) NW_004955406 37510675 37526178 - 102015371 AGCD01006576;GBCQ01034309;XM_005375181;XM_013522219 XP_005375238;XP_013377673 MODEL 8746501 pseudo LOC102020426 zinc finger and BTB domain-containing protein 44 pseudogene NW_004955408 11084995 11106336 + 102020426 AGCD01008290;AGCD01008291;AGCD01008292;AGCD01008293 MODEL 8994608 pseudo LOC102027030 zinc finger CCCH domain-containing protein 11A pseudogene NW_004955402 39450405 39453112 - 102027030 AGCD01000981;XM_005372954;XM_005372955 MODEL 8987736 pseudo LOC102017034 poly(A) RNA polymerase GLD2-like NW_004955496 5787357 5788813 - 102017034 AGCD01062358 MODEL 8757250 protein-coding Samd4a sterile alpha motif domain containing 4A ENCODES a protein that exhibits translation repressor activity (ortholog); INVOLVED IN positive regulation of translation (ortholog); regulation of postsynapse assembly (ortholog); ASSOCIATED WITH DOPA-responsive dystonia (ortholog); head and neck squamous cell carcinoma (ortholog); substance-related disorder (ortholog); FOUND IN cell junction (ortholog); cytosol (ortholog); fibrillar center (ortholog) NW_004955409 8716432 8916398 - 102029594 AGCD01009424;AGCD01009425;GBCB01020589;XM_005376760 XP_005376817 MODEL 8740166 protein-coding LOC102022950 olfactory receptor 4A15-like NW_004955511 146913 154529 + 102022950 AGCD01066321;XM_005408179 XP_005408236 MODEL 8946154 protein-coding Tex15 testis expressed 15, meiosis and synapsis associated INVOLVED IN DNA methylation-dependent constitutive heterochromatin formation (ortholog); fertilization (ortholog); homeostasis of number of cells within a tissue (ortholog); ASSOCIATED WITH myoepithelioma (ortholog); spermatogenic failure 1 (ortholog); spermatogenic failure 25 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955463 7296204 7360935 - 102026955 AGCD01049726;GBDF01127895;XM_005398378;XM_013521569;XM_013521570;XM_013521571;XM_013521572 XP_005398435;XP_013377023;XP_013377024;XP_013377025;XP_013377026 MODEL 126903071 mirna MIR488 microRNA 488 8841867 protein-coding LOC102028738 olfactory receptor 52A1-like NW_004955414 20814451 20816038 + 102028738 AGCD01015389;XM_005380480 XP_005380537 MODEL 8958274 ncrna LOC102023990 uncharacterized LOC102023990 NW_004955464 4481893 4502655 - 102023990 AGCD01049991;GBDF01181625;XR_001236668;XR_263195 MODEL 8755290 protein-coding LOC102027033 uncharacterized LOC102027033 NW_004955613 127297 201939 + 102027033 AGCD01077198;AGCD01077199;AGCD01077200;AGCD01077201;AGCD01077202;GBDK01107488;XM_013510133 XP_013365587 MODEL 39133652 snrna U4 U4 spliceosomal RNA 8723944 pseudo LOC102005865 transcription factor BTF3 homolog 4 pseudogene NW_004955588 220604 221041 + 102005865 AGCD01076095 MODEL 9067826 pseudo LOC102024609 zinc finger protein 277 pseudogene NW_004955525 3961128 3986485 + 102024609 AGCD01069164;AGCD01069165 MODEL 39133653 snrna U4 U4 spliceosomal RNA 8709730 protein-coding Icam1 intercellular adhesion molecule 1 ENCODES a protein that exhibits integrin binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN acute inflammatory response to antigenic stimulus (ortholog); cell adhesion (ortholog); cell adhesion mediated by integrin (ortholog); PARTICIPATES IN eicosanoid signaling pathway; pro-inflammatory cytokine mediated pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); acute kidney failure (ortholog); Acute Lung Injury (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular exosome (ortholog) NW_004955495 1561464 1573282 + 102029873 AGCD01061701;AGCD01061702;AGCD01061703;GBDK01022433;XM_005405586;XM_005405587 XP_005405643;XP_005405644 MODEL 8907424 pseudo LOC102025997 vasculin-like protein 1 pseudogene NW_004955471 9096712 9098135 + 102025997 AGCD01053201 MODEL 8758197 ncrna LOC102012264 uncharacterized LOC102012264 NW_004955403 2898337 2898936 + 102012264 AGCD01001740;GBDJ01216344;XR_259140 MODEL 8871884 protein-coding Lag3 lymphocyte activating 3 ENCODES a protein that exhibits MHC class II protein binding (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); natural killer cell mediated cytotoxicity (ortholog); negative regulation of interleukin-2 production (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); peroxisome biogenesis disorder 2B (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular region (ortholog) NW_004955413 4379529 4385456 + 102029278 AGCD01013612;GBBH01189509;XM_005378825 XP_005378882 MODEL 9035663 protein-coding Sh3d19 SH3 domain containing 19 ENCODES a protein that exhibits proline-rich region binding (ortholog); INVOLVED IN cytoskeleton organization (ortholog); positive regulation of membrane protein ectodomain proteolysis (ortholog); regulation of cell morphogenesis (ortholog); ASSOCIATED WITH essential tremor (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955471 5724303 5810868 - 102023256 AGCD01053113;GBDJ01086123;GBDK01085587;XM_013522884;XM_013522885;XM_013522886;XM_013522887 XP_013378338;XP_013378339;XP_013378340;XP_013378341 MODEL 8859934 protein-coding Znf396 zinc finger protein 396 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955402 22087109 22095664 - 102004536 AGCD01000599;GBDJ01352466;XM_013509662 XP_013365116 MODEL 10063069 protein-coding LOC106150010 translation initiation factor IF-2-like NW_004955460 7458336 7460814 + 106150010 AGCD01048482;GBDF01006275;XM_013521221 XP_013376675 MODEL 8975418 ncrna LOC102009935 uncharacterized LOC102009935 NW_004955471 831025 838931 - 102009935 AGCD01052965;GBDF01265719;XR_263511 MODEL 8994865 protein-coding LOC102007274 FMR1 neighbor-like NW_004955532 1194463 1194945 + 102007274 AGCD01070170;XM_013507573 XP_013363027 MODEL 8974849 pseudo LOC102017897 mitochondrial import inner membrane translocase subunit Tim9-like NW_004955506 1117685 1117951 - 102017897 AGCD01065246 MODEL 8872922 protein-coding LOC102015275 phospholipase A2, membrane associated-like NW_004955452 611395 613020 - 102015275 AGCD01043820;XM_005394668 XP_005394725 MODEL 8897789 pseudo LOC102003025 splicing factor 3A subunit 1-like NW_004955419 15519929 15520421 + 102003025 AGCD01020083 MODEL 8920561 pseudo LOC102018266 suppressor of cytokine signaling 2 pseudogene NW_004955409 12562778 12566437 - 102018266 AGCD01009552 MODEL 8832954 protein-coding Tex19 testis expressed 19 ENCODES a protein that exhibits piRNA binding (ortholog); INVOLVED IN male meiotic nuclear division (ortholog); spermatogenesis (ortholog); transposable element silencing (ortholog); ASSOCIATED WITH generalized epilepsy (ortholog); FOUND IN nucleus (ortholog) NW_004955506 773128 775155 - 102010925 AGCD01065235;GBDF01251542;XM_005407204 XP_005407261 MODEL 8907916 protein-coding Erc1 ELKS/RAB6-interacting/CAST family member 1 ENCODES a protein that exhibits PDZ domain binding (ortholog); small GTPase binding (ortholog); structural constituent of presynaptic active zone (ortholog); INVOLVED IN I-kappaB phosphorylation (ortholog); positive regulation of NF-kappaB transcription factor activity (ortholog); regulation of calcium-dependent activation of synaptic vesicle fusion (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); Macrocephaly, Dysmorphic Facies, and Psychomotor Retardation (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955454 3584910 4036276 + 102023327 AGCD01045094;AGCD01045095;AGCD01045096;AGCD01045097;AGCD01045098;AGCD01045099;AGCD01045100;AGCD01045101;AGCD01045102;AGCD01045103;AGCD01045104;AGCD01045105;AGCD01045106;AGCD01045107;AGCD01045108;GBBH01147455;XM_005395944;XM_005395945;XM_005395946;XM_005395947;XM_005395948;XM_005395949;XM_013520185;XM_013520186;XM_013520187;XM_013520189;XM_013520190;XM_013520191;XM_013520192 XP_005396001;XP_005396002;XP_005396003;XP_005396004;XP_005396005;XP_005396006;XP_013375639;XP_013375640;XP_013375641;XP_013375643;XP_013375644;XP_013375645;XP_013375646 MODEL 8957178 pseudo LOC102008791 alpha-enolase pseudogene NW_004955447 16493351 16494703 + 102008791 AGCD01041088 MODEL 8941448 protein-coding Lage3 L antigen family member 3 ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytoplasm (ortholog); EKC/KEOPS complex (ortholog); nuclear body (ortholog) NW_004955580 992190 993617 - 102004533 AGCD01075636;GBDJ01279132;XM_005414204 XP_005414261 MODEL 8913767 protein-coding Sh3d21 SH3 domain containing 21 ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog) NW_004955452 14283194 14295863 + 102029931 AGCD01044462;AGCD01044463;GBDI01272576;XM_013519503;XM_013519504 XP_013374957;XP_013374958 MODEL 9019625 pseudo LOC102025049 neurofascin-like NW_004955545 3179386 3193174 - 102025049 AGCD01071934 MODEL 8875763 protein-coding LOC102017899 uncharacterized LOC102017899 NW_004955508 4019743 4057039 - 102017899 AGCD01065855;AGCD01065856;AGCD01065857;AGCD01065858;AGCD01065859;AGCD01065860;GBBH01063497;GBDJ01031312;XM_005407755 XP_005407812 MODEL 8758810 protein-coding Nell1 neural EGFL like 1 ENCODES a protein that exhibits heparin binding (ortholog); identical protein binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN negative regulation of osteoblast proliferation (ortholog); negative regulation of protein catabolic process (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH craniosynostosis (ortholog); esophagus adenocarcinoma (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog); nuclear envelope (ortholog) NW_004955476 1445234 2236954 + 102008219 AGCD01055206;AGCD01055207;AGCD01055208;AGCD01055209;AGCD01055210;AGCD01055211;AGCD01055212;AGCD01055213;AGCD01055214;AGCD01055215;AGCD01055216;AGCD01055217;AGCD01055218;AGCD01055219;AGCD01055220;GBBH01168145;XM_005401727;XM_005401728 XP_005401784;XP_005401785 MODEL 8833138 protein-coding LOC102013474 translation initiation factor IF-2-like NW_004955407 18942404 19075796 + 102013474 AGCD01007290;AGCD01007291;AGCD01007292;AGCD01007293;AGCD01007294;GBDF01304388;XM_013505824 XP_013361278 MODEL 9033392 pseudo LOC102022575 phosphoglycerate mutase 1-like NW_004955411 32207891 32260701 + 102022575 AGCD01012294;AGCD01012295;AGCD01012296;AGCD01012297;AGCD01012298 MODEL 8742304 protein-coding Vldlr very low density lipoprotein receptor ENCODES a protein that exhibits apolipoprotein binding (ortholog); calcium-dependent protein binding (ortholog); cargo receptor activity (ortholog); INVOLVED IN cellular response to glucose starvation (ortholog); cellular response to hypoxia (ortholog); cellular response to insulin stimulus (ortholog); PARTICIPATES IN altered Reelin signaling pathway; Reelin signaling pathway; ASSOCIATED WITH age related macular degeneration 1 (ortholog); Alzheimer's disease (ortholog); amenorrhea (ortholog); FOUND IN apical part of cell (ortholog); cell surface (ortholog); extracellular space (ortholog) NW_004955434 7013092 7050103 + 102017491 AGCD01032223;AGCD01032224;GBCB01020327;XM_005388610;XM_013516367 XP_005388667;XP_013371821 MODEL 8835268 protein-coding LOC102009161 lupus La protein-like NW_004955412 27605630 27607235 - 102009161 AGCD01013242;GBBH01116715;GBCC01021705;XM_005378521 XP_005378578 MODEL 8969020 protein-coding LOC102023679 putative olfactory receptor 10D4 NW_004955412 24824375 24824917 - 102023679 AGCD01013127;XM_005378638 XP_005378695 MODEL 8905759 protein-coding Tmub2 transmembrane and ubiquitin like domain containing 2 ASSOCIATED WITH GRN-related frontotemporal lobar degeneration with TDP43 inclusions (ortholog); hereditary breast ovarian cancer syndrome (ortholog) NW_004955451 17277530 17280585 + 102009906 AGCD01043735;GBCB01042231;GBDF01084095;XM_005394521 XP_005394578 MODEL 8932036 protein-coding Tex2 testis expressed 2 ASSOCIATED WITH COVID-19 (ortholog); hyperkalemic periodic paralysis (ortholog) NW_004955478 7616196 7689136 + 102015951 AGCD01055983;AGCD01055984;AGCD01055985;AGCD01055986;GBDF01303240;XM_005402171;XM_005402172;XM_013503181;XM_013503182 XP_005402228;XP_005402229;XP_013358635;XP_013358636 MODEL 8950651 pseudo LOC102008792 F-box/LRR-repeat protein 20 pseudogene NW_004955447 14849540 14851022 - 102008792 AGCD01041022 MODEL 8814179 protein-coding LOC102005867 protein S100-A8 ASSOCIATED WITH Acute Otitis Media NW_004955592 72594 73659 + 102005867 AGCD01076300;GBBH01004217;XM_005414602;XM_013509975 XP_005414659;XP_013365429 MODEL 8913606 ncrna LOC102019510 uncharacterized LOC102019510 NW_004955497 4056191 4062405 + 102019510 AGCD01062564;GBCQ01031347;XR_264203 MODEL 8735809 protein-coding LOC102017036 melanoma-associated antigen 10-like NW_004955498 2045653 2046417 - 102017036 AGCD01062761;XM_005406467 XP_005406524 MODEL 8999836 ncrna LOC102023684 uncharacterized LOC102023684 NW_004955414 15767549 15793627 + 102023684 AGCD01015189;GBDF01221858;XR_260175 MODEL 8944439 protein-coding Sdc3 syndecan 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cell adhesion (ortholog); regulation of cell migration (ortholog); PARTICIPATES IN melanocortin system pathway; syndecan signaling pathway; ASSOCIATED WITH obesity (ortholog); FOUND IN axon (ortholog); membrane (ortholog); microspike (ortholog) NW_004955452 9442860 9479776 - 102003086 AGCD01044237;AGCD01044238;GBCB01111838;XM_005395001;XM_005395002;XM_013519686 XP_005395058;XP_005395059;XP_013375140 MODEL 8847062 protein-coding Tex22 testis expressed 22 FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog) NW_004955538 3618777 3627906 + 102006073 AGCD01071172;GBDF01003251;XM_005410862;XM_005410863;XM_005410864 XP_005410919;XP_005410920;XP_005410921 MODEL 8749864 pseudo LOC102019513 L-lactate dehydrogenase B chain pseudogene NW_004955501 4712073 4713040 + 102019513 AGCD01064141 MODEL 8853147 protein-coding LOC102027035 olfactory receptor 2M3-like NW_004955630 54635 55582 + 102027035 AGCD01077520;XM_005415033 XP_005415090 MODEL 8992088 protein-coding Gpr34 G protein-coupled receptor 34 ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); ovarian cyst (ortholog) NW_004955565 1096853 1103610 - 102026682 AGCD01074303;GBBH01036945;XM_005413246;XM_005413247 XP_005413303;XP_005413304 MODEL 8910156 protein-coding LOC102003026 uncharacterized LOC102003026 NW_004955485 9190059 9193837 + 102003026 AGCD01058751;AGCD01058752;GBDF01251522;XM_013504053 XP_013359507 MODEL 8969263 protein-coding Spef2 sperm flagellar 2 INVOLVED IN brain morphogenesis (ortholog); cerebrospinal fluid circulation (ortholog); epithelial cilium movement involved in extracellular fluid movement (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); primary ciliary dyskinesia (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955426 20587312 20747034 + 102008012 AGCD01026571;AGCD01026572;AGCD01026573;AGCD01026574;GBDF01125859;XM_005386196;XM_005386198;XM_005386199;XM_013515000;XM_013515001;XR_261209 XP_005386253;XP_005386255;XP_005386256;XP_013370454;XP_013370455 MODEL 8997249 protein-coding Sdc4 syndecan 4 ENCODES a protein that exhibits fibronectin binding (ortholog); identical protein binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN inner ear receptor cell stereocilium organization (ortholog); negative regulation of T cell proliferation (ortholog); neural tube closure (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH adenosine deaminase deficiency (ortholog); bacterial infectious disease (ortholog); COVID-19 (ortholog); FOUND IN cell surface (ortholog); costamere (ortholog); focal adhesion (ortholog) NW_004955445 11990916 12009178 + 102008039 AGCD01039731;GBCQ01033149;XM_005392434 XP_005392491 MODEL 8832479 protein-coding LOC102018270 uncharacterized LOC102018270 NW_004955465 3342697 3344495 + 102018270 AGCD01050375;GBDF01176710;XM_005398979 XP_005399036 MODEL 8987587 protein-coding Uros uroporphyrinogen III synthase ENCODES a protein that exhibits folic acid binding (ortholog); uroporphyrinogen-III synthase activity (ortholog); INVOLVED IN cellular response to amine stimulus (ortholog); cellular response to arsenic-containing substance (ortholog); heme A biosynthetic process (ortholog); PARTICIPATES IN acute intermittent porphyria pathway; erythropoietic porphyria pathway; heme biosynthetic pathway; ASSOCIATED WITH cutaneous porphyria (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog) NW_004955477 3673583 3707761 - 102010156 AGCD01055560;AGCD01055561;GBDK01280585;XM_005401999;XM_005402000;XM_005402001;XM_005402002;XM_013503052;XM_013503053 XP_005402056;XP_005402057;XP_005402058;XP_005402059;XP_013358506;XP_013358507 MODEL 8918482 protein-coding Tex26 testis expressed 26 NW_004955431 14880152 14910325 - 102018520 AGCD01030343;GBBH01036988;XM_005387737;XM_005387739;XM_013515719 XP_005387794;XP_005387796;XP_013371173 MODEL 8771935 protein-coding LOC102020433 uncharacterized LOC102020433 NW_004955412 23868035 23928404 + 102020433 AGCD01013100;GBDF01083172;XM_013511076;XR_001232889;XR_001232890;XR_001232891;XR_001232892 XP_013366530 MODEL 8871829 protein-coding LOC102025053 transmembrane protein 19-like NW_004955444 15913549 15914828 - 102025053 AGCD01039158;GBCC01050787;XM_005392172 XP_005392229 MODEL 8894665 pseudo LOC102009162 Krueppel-like factor 3 pseudogene NW_004955412 32434354 32435058 - 102009162 AGCD01013355;XR_260036 MODEL 8757143 pseudo LOC102026003 TIMELESS-interacting protein-like NW_004955416 8733181 8735686 + 102026003 AGCD01017065 MODEL 8729091 pseudo LOC102018271 60S ribosomal protein L9-like NW_004955412 17709908 17710500 + 102018271 AGCD01012916 MODEL 39131560 protein-coding XKR7 XK related 7 8773571 pseudo LOC102017038 interferon-induced protein with tetratricopeptide repeats 1B-like NW_004955425 3636761 3638713 - 102017038 AGCD01025295 MODEL 8848038 protein-coding LOC102006164 24-hydroxycholesterol 7-alpha-hydroxylase ENCODES a protein that exhibits steroid 7-alpha-hydroxylase activity (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); cholesterol catabolic process (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); hepatocellular carcinoma (ortholog) NW_004955437 11444780 11497268 - 102006164 AGCD01034574;GBDK01017216;XM_005389856 XP_005389913 MODEL 39131533 protein-coding TAFA2 TAFA chemokine like family member 2 39132881 snrna U6 U6 spliceosomal RNA 8720751 ncrna LOC102028739 uncharacterized LOC102028739 NW_004955472 9866964 9882559 - 102028739 AGCD01053697;GBDF01254458;XR_001237075 MODEL 8838314 protein-coding LOC102015289 olfactory receptor 6C75 NW_004955458 2726283 2727218 - 102015289 AGCD01047241;XM_005397244 XP_005397301 MODEL 9032967 protein-coding LOC102009166 TRIO and F-actin-binding protein-like NW_004955413 24091962 24110422 + 102009166 AGCD01014347;AGCD01014348;XM_013511302 XP_013366756 MODEL 8790733 protein-coding LOC102018274 Wilms tumor protein 1-interacting protein-like NW_004955466 5534404 5550454 - 102018274 AGCD01050882;GBDF01040845;XM_013521879 XP_013377333 MODEL 8746796 pseudo LOC102003030 high mobility group protein B2 pseudogene NW_004955420 23360748 23364378 - 102003030 AGCD01021245 MODEL 8933198 ncrna LOC102009168 uncharacterized LOC102009168 NW_004955471 210298 228033 - 102009168 AGCD01052952;GBDF01209473;XR_263509 MODEL 8754161 ncrna LOC102013482 uncharacterized LOC102013482 NW_004955410 30652472 30654572 + 102013482 AGCD01011311;GBDF01251645;XR_001232753 MODEL 9004111 ncrna LOC102022952 uncharacterized LOC102022952 NW_004955514 4405034 4409451 - 102022952 AGCD01067132;GBCQ01091511;XR_264511 MODEL 8724020 ncrna LOC102012268 uncharacterized LOC102012268 NW_004955403 25880625 25907260 + 102012268 AGCD01002295;GBDF01251079;XR_001233582;XR_001233583;XR_259202 MODEL 8962794 pseudo LOC102018283 RNA-binding protein 34 pseudogene NW_004955475 9524183 9525658 + 102018283 AGCD01055068 MODEL 8879934 protein-coding Samd4b sterile alpha motif domain containing 4B ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN cerebellar neuron development (ortholog); ASSOCIATED WITH maturity-onset diabetes of the young type 1 (ortholog); peroxisome biogenesis disorder 1A (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN cytosol (ortholog) NW_004955468 172331 199230 - 102023572 AGCD01051684;GBDJ01084508;XM_005399777;XM_005399779;XM_013522377;XM_013522378 XP_005399834;XP_005399836;XP_013377831;XP_013377832 MODEL 8898874 ncrna LOC102003310 uncharacterized LOC102003310 NW_004955453 2086507 2095184 - 102003310 AGCD01044622;GBDF01223525;XR_001236135;XR_001236136;XR_001236137 MODEL 9067969 protein-coding Lpin1 lipin 1 ENCODES a protein that exhibits histone deacetylase binding (ortholog); peroxisome proliferator activated receptor binding (ortholog); phosphatidate phosphatase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); animal organ regeneration (ortholog); cellular response to insulin stimulus (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH Acute Recurrent Myoglobinuria, Autosomal Recessive (ortholog); Cachexia (ortholog); end stage renal disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955487 6139188 6207316 + 102008002 AGCD01059358;AGCD01059359;AGCD01059360;AGCD01059361;AGCD01059362;GBCB01006082;XM_005404433;XM_005404434;XM_005404435 XP_005404490;XP_005404491;XP_005404492 MODEL 8899519 pseudo LOC102023690 ubiquitin-40S ribosomal protein S27a pseudogene NW_004955416 646836 651260 - 102023690 AGCD01016816;AGCD01016817;XR_260344 MODEL 39132401 snrna U6 U6 spliceosomal RNA 8726454 pseudo LOC102026006 UDP-N-acetylglucosamine transporter-like NW_004955481 1573638 1578463 - 102026006 AGCD01056837;AGCD01056838 MODEL 8823933 pseudo LOC102007607 ubiquitin-fold modifier 1 pseudogene NW_004955583 28661 29029 - 102007607 AGCD01075791 MODEL 10178249 ncrna LOC106149169 uncharacterized LOC106149169 NW_004955438 3173564 3182076 - 106149169 AGCD01035019;XR_001235162 MODEL 8797070 protein-coding Samd5 sterile alpha motif domain containing 5 FOUND IN cytoplasm (ortholog) NW_004955867 2559 3237 - 102020516 AGCD01078524;GBCQ01114304;GBDK01194475;XM_005415139 XP_005415196 MODEL 39133655 snrna U4 U4 spliceosomal RNA 8898820 protein-coding Lalba lactalbumin alpha ENCODES a protein that exhibits lactose synthase activity (ortholog); INVOLVED IN lactose biosynthetic process (ortholog); PARTICIPATES IN Glut1 deficiency syndrome pathway; lactose biosynthetic pathway; ASSOCIATED WITH colon cancer (ortholog); gastroenteritis (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955500 7487603 7489573 - 102030331 AGCD01063927;GBDF01138326;XM_005406651 XP_005406708 MODEL 39132882 snrna U6 U6 spliceosomal RNA 8960705 protein-coding Icam2 intercellular adhesion molecule 2 ENCODES a protein that exhibits integrin binding (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); hyperkalemic periodic paralysis (ortholog); malignant mesothelioma (ortholog); FOUND IN cell periphery (ortholog); cleavage furrow (ortholog); microvillus (ortholog) NW_004955478 7846460 7851889 + 102017233 AGCD01055998;GBDJ01213998;XM_005402176 XP_005402233 MODEL 10158837 ncrna LOC106146902 uncharacterized LOC106146902 NW_004955402 45610002 45614788 + 106146902 AGCD01001141;GBDF01224255;XR_001231534 MODEL 8916360 protein-coding LOC102022578 heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like NW_004955467 3848579 3956203 + 102022578 AGCD01051347;AGCD01051348;AGCD01051349;AGCD01051350;AGCD01051351;AGCD01051352;AGCD01051353;AGCD01051354;GBBH01213909;GBCQ01153185;XM_013522023 XP_013377477 MODEL 8894331 protein-coding Sdcbp syndecan binding protein ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); ephrin receptor binding (ortholog); frizzled binding (ortholog); INVOLVED IN negative regulation of receptor internalization (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of cell growth (ortholog); PARTICIPATES IN interleukin-5 signaling pathway; syndecan signaling pathway; ASSOCIATED WITH osteoarthritis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular exosome (ortholog) NW_004955454 17093930 17113491 + 102016345 AGCD01045545;GBDF01080642;XM_013520111;XM_013520112 XP_013375565;XP_013375566 MODEL 8964661 pseudo LOC102005870 RING finger and transmembrane domain-containing protein 1 pseudogene NW_004955602 483146 483899 - 102005870 AGCD01076788 MODEL 8798963 protein-coding LOC102003032 uncharacterized LOC102003032 NW_004955421 8414832 8416723 + 102003032 AGCD01021811;GBDF01288165;XM_005383920 XP_005383977 MODEL 8830705 protein-coding Tmx1 thioredoxin related transmembrane protein 1 ENCODES a protein that exhibits disulfide oxidoreductase activity (ortholog); enzyme inhibitor activity (ortholog); protein disulfide isomerase activity (ortholog); INVOLVED IN negative regulation of platelet aggregation (ortholog); negative regulation of triglyceride biosynthetic process (ortholog); positive regulation of ERAD pathway (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); mitochondria-associated endoplasmic reticulum membrane contact site (ortholog) NW_004955409 11708867 11722205 - 102014218 AGCD01009520;AGCD01009521;GBDI01168278;XM_005376792 XP_005376849 MODEL 8841059 protein-coding LOC102020434 olfactory receptor 147-like NW_004955412 24590041 24598525 + 102020434 AGCD01013118;XM_005378631;XM_013510938 XP_005378688;XP_013366392 MODEL 10295339 protein-coding Icam4 intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) ASSOCIATED WITH familial hypercholesterolemia (ortholog); immunodeficiency 35 (ortholog) NW_004955495 1573444 1575595 + 106146785 AGCD01061703;GBDJ01131667;XM_013505169 XP_013360623 MODEL 8957674 pseudo LOC102024612 afadin- and alpha-actinin-binding protein pseudogene NW_004955543 1710564 1712276 - 102024612 AGCD01071628 MODEL 8721846 protein-coding Sdcbp2 syndecan binding protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN cell population proliferation (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955596 531741 555710 - 102014305 AGCD01076521;AGCD01076522;GBBH01180478;XM_005414702 XP_005414759 MODEL 8803453 protein-coding LOC102005873 PRAME family member 12-like NW_004955615 256153 258758 + 102005873 AGCD01077252;XM_005414985 XP_005415042 MODEL 8835106 protein-coding LOC102003033 HRAS-like suppressor 3 NW_004955422 21415634 21440465 + 102003033 AGCD01023116;GBDK01181579;XM_005384673;XM_013514096;XM_013514097 XP_005384730;XP_013369550;XP_013369551 MODEL 8875810 ncrna LOC102019514 uncharacterized LOC102019514 NW_004955427 11862404 11900128 + 102019514 AGCD01027195;AGCD01027196;AGCD01027197;GBCQ01186668;XR_001234347;XR_261253 MODEL 8902421 protein-coding LOC102017040 eosinophil granule major basic protein 2-like NW_004955511 2421639 2423500 - 102017040 AGCD01066401;GBBH01031618;XM_005407994 XP_005408051 MODEL 8827726 protein-coding LOC102027036 selenoprotein K-like NW_004955451 10839662 10840425 + 102027036 AGCD01043333;AY462141;XM_013519284 AAR26540;Q6S9C4;XP_013374738 MODEL 8943748 ncrna LOC102015291 uncharacterized LOC102015291 NW_004955409 5874528 5879794 + 102015291 AGCD01009326;GBDF01211387;XR_259754 MODEL 39133702 mirna MIR490 microRNA 490 8844424 ncrna LOC102024614 uncharacterized LOC102024614 NW_004955439 15058548 15077326 + 102024614 AGCD01035998;AGCD01035999;GBDF01042735;XR_261992 MODEL 8701098 protein-coding Usb1 U6 snRNA biogenesis phosphodiesterase 1 ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends (ortholog); INVOLVED IN RNA splicing (ortholog); snRNA 3'-end processing (ortholog); U6 snRNA 3'-end processing (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN intercellular bridge (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955433 15572884 15580108 + 102012016 AGCD01031760;GBCB01056320;GBDF01010131;XM_005388505;XM_013516252;XM_013516253 XP_005388562;XP_013371706;XP_013371707 MODEL 8825405 protein-coding Speg striated muscle enriched protein kinase INVOLVED IN cardiac muscle cell development (ortholog); circulatory system development (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); autosomal dominant centronuclear myopathy (ortholog); autosomal recessive centronuclear myopathy (ortholog) NW_004955453 13979080 14033718 - 102006206 AGCD01044855;AGCD01044856;AGCD01044857;GBCB01004610;XM_013519790;XM_013519791 XP_013375244;XP_013375245 MODEL 8776301 pseudo LOC102009936 probable RNA-binding protein 46 pseudogene NW_004955414 12245219 12246350 - 102009936 AGCD01015095 MODEL 10065713 ncrna LOC106150011 uncharacterized LOC106150011 NW_004955460 8135802 8142315 - 106150011 AGCD01048512;GBDJ01299914;XR_001236532;XR_001236533 MODEL 8751134 protein-coding Slc12a4 solute carrier family 12 member 4 ENCODES a protein that exhibits ATP binding (ortholog); potassium:chloride symporter activity (ortholog); protein serine/threonine kinase binding (ortholog); INVOLVED IN potassium ion transmembrane transport (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); Norum disease (ortholog) NW_004955484 8749194 8772599 + 102017576 AGCD01058396;GBDF01116937;XM_005403604 XP_005403661 MODEL 9033223 ncrna LOC102015298 uncharacterized LOC102015298 NW_004955410 30514436 30531199 - 102015298 AGCD01011308;AGCD01011309;GBDK01243564;XR_259890 MODEL 8874671 protein-coding Lama1 laminin subunit alpha 1 ENCODES a protein that exhibits extracellular matrix structural constituent (ortholog); glycosphingolipid binding (ortholog); INVOLVED IN branching involved in salivary gland morphogenesis (ortholog); cell surface receptor signaling pathway (ortholog); epithelial tube branching involved in lung morphogenesis (ortholog); PARTICIPATES IN glypican signaling pathway; syndecan signaling pathway; ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); Colorectal Neoplasms (ortholog); congenital merosin-deficient muscular dystrophy 1A (ortholog); FOUND IN basement membrane (ortholog); cell-cell junction (ortholog); extracellular matrix (ortholog) NW_004955402 4281415 4397158 + 102013130 AGCD01000118;AGCD01000119;AGCD01000120;AGCD01000121;GBCQ01099096;XM_013517659 XP_013373113 MODEL 8821940 ncrna LOC102013484 uncharacterized LOC102013484 NW_004955411 20773140 20790799 + 102013484 AGCD01012062;GBDF01156022;XR_001232796;XR_001232797;XR_259940 MODEL 8702571 protein-coding LOC102021276 disintegrin and metalloproteinase domain-containing protein 5-like NW_004955536 3528401 3648035 - 102021276 AGCD01070827;AGCD01070828;AGCD01070829;AGCD01070830;GBDF01008700;XM_005410548;XM_005410549;XM_013507719;XM_013507720 XP_005410605;XP_005410606;XP_013363173;XP_013363174 MODEL 9005600 ncrna LOC102012270 uncharacterized LOC102012270 NW_004955451 13227860 13233237 + 102012270 AGCD01043462;GBDK01199688;XR_262601 MODEL 8899620 protein-coding Use1 unconventional SNARE in the ER 1 INVOLVED IN endoplasmic reticulum organization (ortholog); endoplasmic reticulum tubular network organization (ortholog); regulation of ER to Golgi vesicle-mediated transport (ortholog); FOUND IN COPI-coated vesicle (ortholog); endoplasmic reticulum (ortholog); SNARE complex (ortholog) NW_004955524 969181 973469 - 102003686 AGCD01068732;GBDF01119245;XM_005409514 XP_005409571 MODEL 8784227 protein-coding Klhl28 kelch like family member 28 ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Fanconi anemia (ortholog) NW_004955409 16968099 16999697 + 102009583 AGCD01009756;GBDI01216368;XM_005376867;XM_005376868;XM_005376869 XP_005376924;XP_005376925;XP_005376926 MODEL 8763920 ncrna LOC102017904 uncharacterized LOC102017904 NW_004955431 14669607 14678845 - 102017904 AGCD01030337;GBDF01235010;XR_261473 MODEL 8838874 protein-coding LOC102006165 cytochrome c-type heme lyase ENCODES a protein that exhibits heme binding (ortholog); holocytochrome-c synthase activity (ortholog); INVOLVED IN cytochrome c-heme linkage (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); mitochondrion (ortholog) NW_004955544 2105486 2117830 - 102006165 AGCD01071732;GBCB01062002;XM_005411390 XP_005411447 MODEL 8769579 ncrna LOC102007609 uncharacterized LOC102007609 NW_004955450 683168 685850 - 102007609 AGCD01042342;GBCQ01139779;XR_262512 MODEL 8956859 ncrna LOC102023695 uncharacterized LOC102023695 NW_004955416 24064757 24111176 - 102023695 AGCD01017560;GBCE01142447;XR_001233308;XR_001233309;XR_001233310;XR_001233311;XR_001233312;XR_001233313;XR_260416 MODEL 9018250 protein-coding LOC102021279 AFG3-like protein 1 NW_004955541 3433520 3460695 + 102021279 AGCD01071448;AGCD01071449;GBDF01049325;XM_013507965 XP_013363419 MODEL 8865952 protein-coding LOC102019525 melanoma-associated antigen B3-like NW_004955531 780560 788753 + 102019525 AGCD01070011;AGCD01070012;XM_005410136 XP_005410193 MODEL 8773901 protein-coding LOC102008793 collagen alpha-2(I) chain NW_004955580 161170 172197 - 102008793 AGCD01075587;AGCD01075588;AGCD01075589;GBDF01080395;XM_005414114 XP_005414171 MODEL 8958847 protein-coding Usf1 upstream transcription factor 1 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to insulin stimulus (ortholog); glucose mediated signaling pathway (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); cardiovascular system disease (ortholog); familial combined hyperlipidemia (ortholog); FOUND IN chromatin (ortholog); Golgi apparatus (ortholog); nucleoplasm (ortholog) NW_004955468 12814810 12821383 - 102024548 AGCD01052189;GBBH01065429;XM_005400230;XM_013522523 XP_005400287;XP_013377977 MODEL 8782010 pseudo LOC102007279 magnesium transporter NIPA2 pseudogene NW_004955439 11430788 11431838 + 102007279 AGCD01035908 MODEL 8751911 ncrna LOC102023993 uncharacterized LOC102023993 NW_004955412 31694982 31714129 + 102023993 AGCD01013343;GBDF01157393;XR_001232858;XR_001232859;XR_260033 MODEL 8922399 protein-coding LOC102027038 keratin-associated protein 16-1 NW_004955451 15717621 15720354 - 102027038 AGCD01043634;AGCD01043635;GBBH01191461;XM_013519183 XP_013374637 MODEL 8873594 protein-coding Znf397 zinc finger protein 397 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); microtubule cytoskeleton (ortholog) NW_004955402 21973687 21982202 + 102006727 AGCD01000595;GBCE01005547;XM_005372801 XP_005372858 MODEL 39133711 mirna MIR491 microRNA 491 10164882 ncrna LOC106146903 uncharacterized LOC106146903 NW_004955502 6812042 6821810 + 106146903 AGCD01064421;GBDI01308125;XR_001231530 MODEL 8814304 ncrna LOC102009937 uncharacterized LOC102009937 NW_004955415 6291304 6307243 - 102009937 AGCD01016013;AGCD01016014;GBBH01127465;XR_001233263 MODEL 8814219 ncrna LOC102007282 uncharacterized LOC102007282 NW_004955442 18390450 18391001 - 102007282 AGCD01038005;GBDK01116847;XR_001235431 MODEL 8816087 ncrna LOC102027039 uncharacterized LOC102027039 NW_004955404 14974247 14980727 + 102027039 AGCD01003526;AGCD01003527;GBBH01152457;XR_259311 MODEL 9057826 protein-coding Erc2 ELKS/RAB6-interacting/CAST family member 2 ENCODES a protein that exhibits PDZ domain binding (ortholog); protein-containing complex binding (ortholog); structural constituent of presynaptic active zone (ortholog); INVOLVED IN regulation of calcium-dependent activation of synaptic vesicle fusion (ortholog); regulation of presynaptic cytosolic calcium ion concentration (ortholog); synapse organization (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); Golgi-associated vesicle (ortholog) NW_004955430 5345191 6308909 - 102008018 AGCD01029260;AGCD01029261;AGCD01029262;AGCD01029263;AGCD01029264;AGCD01029265;AGCD01029266;AGCD01029267;AGCD01029268;AGCD01029269;AGCD01029270;AGCD01029271;AGCD01029272;AGCD01029273;AGCD01029274;AGCD01029275;AGCD01029276;AGCD01029277;AGCD01029278;AGCD01029279;AGCD01029280;AGCD01029281;AGCD01029282;AGCD01029283;AGCD01029284;AGCD01029285;GBDI01215309;XM_005387385;XM_005387388;XM_013515684;XM_013515685;XM_013515686;XM_013515687;XM_013515688;XM_013515689;XM_013515690;XR_001234567 XP_005387442;XP_005387445;XP_013371138;XP_013371139;XP_013371140;XP_013371141;XP_013371142;XP_013371143;XP_013371144 MODEL 8882082 ncrna LOC102015304 uncharacterized LOC102015304 NW_004955468 9262127 9356952 - 102015304 AGCD01052042;AGCD01052043;AGCD01052044;AGCD01052045;AGCD01052046;GBDF01252923;XR_001236884;XR_001236885 MODEL 8913001 protein-coding LOC102026009 uncharacterized LOC102026009 NW_004955418 6811123 6824711 - 102026009 AGCD01018882;AGCD01018883;GBDJ01282837;XM_005382344 XP_005382401 MODEL 8785285 protein-coding Slc12a5 solute carrier family 12 member 5 ENCODES a protein that exhibits ammonium channel activity (ortholog); chloride transmembrane transporter activity (ortholog); potassium:chloride symporter activity (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); chemical synaptic transmission (ortholog); chloride transport (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); developmental and epileptic encephalopathy 34 (ortholog); epilepsy (ortholog); FOUND IN cell periphery (ortholog); dendrite membrane (ortholog); glutamatergic synapse (ortholog) NW_004955445 11252732 11290890 - 102022340 AGCD01039685;GBDK01041979;XM_005392389;XM_005392390;XM_005392391;XM_005392392 XP_005392446;XP_005392447;XP_005392448;XP_005392449 MODEL 8837421 protein-coding Vma12 vacuolar ATPase assembly factor VMA12 ENCODES a protein that exhibits oxysterol binding (ortholog); INVOLVED IN cellular response to increased oxygen levels (ortholog); intracellular iron ion homeostasis (ortholog); lysosomal lumen acidification (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type IIp (ortholog); genetic disease (ortholog); FOUND IN COPI-coated vesicle membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog) NW_004955481 4772394 4776524 - 102006245 AGCD01056951;GBDF01122911;XM_005402759;XM_005402760 XP_005402816;XP_005402817 MODEL 8756688 pseudo LOC102003038 splicing factor 3B subunit 4 pseudogene NW_004955424 14377491 14379086 - 102003038 AGCD01024652 MODEL 39132886 snrna U6 U6 spliceosomal RNA 8736728 protein-coding LOC102009952 uncharacterized LOC102009952 NW_004955420 29396157 29403592 - 102009952 AGCD01021499;AGCD01021500;GBCE01185548;XM_013513408;XR_001233705;XR_001233706;XR_001233707;XR_260774;XR_260775 XP_013368862 MODEL 8903725 protein-coding Tex261 testis expressed 261 INVOLVED IN positive regulation of apoptotic process (ortholog); ASSOCIATED WITH dystonia (ortholog); Methylmalonyl-CoA Epimerase Deficiency (ortholog) NW_004955424 14233322 14246222 + 102029414 AGCD01024648;GBDJ01309647;XM_005385604;XM_013514639 XP_005385661;XP_013370093 MODEL 8862144 protein-coding Nell2 neural EGFL like 2 ENCODES a protein that exhibits calcium ion binding (ortholog); heparin binding (ortholog); identical protein binding (ortholog); INVOLVED IN commissural neuron axon guidance (ortholog); development of secondary female sexual characteristics (ortholog); fertilization (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); extracellular region (ortholog) NW_004955500 3669893 4049765 - 102007788 AGCD01063749;AGCD01063750;AGCD01063751;AGCD01063752;AGCD01063753;AGCD01063754;AGCD01063755;AGCD01063756;AGCD01063757;AGCD01063758;AGCD01063759;AGCD01063760;AGCD01063761;AGCD01063762;AGCD01063763;AGCD01063764;AGCD01063765;GBCE01024937;XM_005406591 XP_005406648 MODEL 8763927 protein-coding LOC102017908 metallothionein-1E NW_004955433 14376480 14378539 + 102017908 AGCD01031721;AY533220;GBDF01120895;XM_005388357 AAS59423;XP_005388414 MODEL 9006576 pseudo LOC102022585 N-alpha-acetyltransferase 50 pseudogene NW_004955468 4644545 4645075 + 102022585 AGCD01051919 MODEL 8929733 protein-coding LOC102024617 olfactory receptor 11H6-like NW_004955550 766566 767534 + 102024617 AGCD01072522;XM_005412138 XP_005412195 MODEL 9023914 ncrna LOC102028741 uncharacterized LOC102028741 NW_004955475 3406770 3419988 + 102028741 AGCD01054841;GBDJ01304656;XR_001230768 MODEL 8914239 protein-coding Lpin2 lipin 2 ENCODES a protein that exhibits phosphatidate phosphatase activity (ortholog); transcription coactivator activity (ortholog); INVOLVED IN lipid metabolic process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); triglyceride biosynthetic process (ortholog); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); chromosome 18p deletion syndrome (ortholog); facioscapulohumeral muscular dystrophy 2 (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955402 7457408 7505829 + 102016763 AGCD01000175;GBCQ01033663;XM_005372657;XM_005372661 XP_005372714;XP_005372718 MODEL 8821590 protein-coding LOC102022587 interleukin-36 beta NW_004955470 1261429 1274387 + 102022587 AGCD01052631;AGCD01052632;AGCD01052633;GBDI01161382;XM_005400590 XP_005400647 MODEL 405822142 mirna MIR494 microRNA 494 8757015 protein-coding Tmx2 thioredoxin related transmembrane protein 2 ENCODES a protein that exhibits disulfide oxidoreductase activity (ortholog); identical protein binding (ortholog); INVOLVED IN brain development (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Nervous System Malformations (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); mitochondria-associated endoplasmic reticulum membrane contact site (ortholog); mitochondrion (ortholog) NW_004955511 2632434 2641531 + 102021469 AGCD01066420;AGCD01066421;AGCD01066422;GBBH01065101;GBDF01045164;XM_005408009 XP_005408066 MODEL 8824225 protein-coding Tafa2 TAFA chemokine like family member 2 INVOLVED IN memory (ortholog); visual learning (ortholog); ASSOCIATED WITH anxiety disorder (ortholog); Cognitive Dysfunction (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955458 8935792 9351358 - 102016133 AGCD01047627;AGCD01047628;AGCD01047629;AGCD01047630;AGCD01047631;AGCD01047632;AGCD01047633;AGCD01047634;AGCD01047635;AGCD01047636;AGCD01047637;AGCD01047638;GBCE01183273;XM_013521029;XM_013521030;XM_013521031 XP_013376483;XP_013376484;XP_013376485 MODEL 8780653 protein-coding LOC102005876 mRNA cap guanine-N7 methyltransferase-like NW_004956031 668 8233 + 102005876 AGCD01078913;GBDK01394335;XM_013510216 XP_013365670 MODEL 8772556 ncrna LOC102007285 uncharacterized LOC102007285 NW_004955447 3220418 3236619 + 102007285 AGCD01040582;GBCQ01008302;XR_262410 MODEL 9056307 protein-coding Ppp1r35 protein phosphatase 1 regulatory subunit 35 INVOLVED IN notochord morphogenesis (ortholog); positive regulation of centriole elongation (ortholog); positive regulation of cilium assembly (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog) NW_004955573 523512 524979 + 102010428 AGCD01074988;AGCD01074989;GBBH01065691;GBDF01134060;XM_013509474 XP_013364928 MODEL 9038087 pseudo LOC102007611 60 kDa heat shock protein, mitochondrial pseudogene NW_004955402 53200161 53201948 + 102007611 AGCD01001363 MODEL 8808397 protein-coding Klhl29 kelch like family member 29 NW_004955469 5787946 5993610 + 102020554 AGCD01052357;AGCD01052358;AGCD01052359;AGCD01052360;AGCD01052361;AGCD01052362;GBDI01311001;XM_005400361;XM_005400364;XM_013522637 XP_005400418;XP_005400421;XP_013378091 MODEL 8764021 protein-coding LOC102023698 C-C motif chemokine 23 NW_004955481 10359882 10363841 - 102023698 AGCD01057144;GBDK01013031;XM_005402899;XM_013503335 XP_005402956;XP_013358789 MODEL 8903025 protein-coding Dgkb diacylglycerol kinase beta ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); lipid binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); glycerolipid metabolic process (ortholog); lipid phosphorylation (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytosol (ortholog); extrinsic component of postsynaptic density membrane (ortholog); glutamatergic synapse (ortholog) NW_004955410 17677375 18304409 - 102019368 AGCD01010991;AGCD01010992;AGCD01010993;AGCD01010994;AGCD01010995;AGCD01010996;AGCD01010997;AGCD01010998;AGCD01010999;AGCD01011000;AGCD01011001;AGCD01011002;GBDJ01401747;XM_005377328;XM_013510618;XM_013510619;XM_013510620;XM_013510621;XM_013510623;XM_013510624 XP_005377385;XP_013366072;XP_013366073;XP_013366074;XP_013366075;XP_013366077;XP_013366078 MODEL 8810915 ncrna LOC102022953 uncharacterized LOC102022953 NW_004955433 10558133 10558820 + 102022953 AGCD01031631;GBDK01053567;XR_001234719 MODEL 8846914 protein-coding LOC102003039 zinc finger protein 14-like NW_004955499 300856 321376 + 102003039 AGCD01063215;AGCD01063216;AGCD01063217;AGCD01063218;GBDI01054273;XM_013505563;XM_013505564;XM_013505565;XM_013505566 XP_013361017;XP_013361018;XP_013361019;XP_013361020 MODEL 8990233 protein-coding LOC102019527 IQ domain-containing protein F5-like NW_004955532 3445260 3445766 + 102019527 AGCD01070280;GBDF01010020;XM_005410323 XP_005410380 MODEL 8769845 protein-coding LOC102018289 histone H4 NW_004955483 827742 828500 - 102018289 AGCD01057632;XM_013503798 XP_013359252 MODEL 8779520 protein-coding Usf2 upstream transcription factor 2, c-fos interacting ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); glucose mediated signaling pathway (ortholog); lactation (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955468 4565089 4574294 + 102022274 AGCD01051917;GBCE01052137;GBCQ01034426;XM_013522428 XP_013377882 MODEL 9005211 protein-coding LOC102003313 chromosome unknown open reading frame, human C1orf21 ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955406 23126976 23257616 + 102003313 AGCD01006165;AGCD01006166;AGCD01006167;AGCD01006168;GBCQ01126238;XM_005375052;XM_005375054;XM_013521592 XP_005375109;XP_005375111;XP_013377046 MODEL 8827582 protein-coding LOC102023994 olfactory receptor 148-like NW_004955412 24836329 24837261 - 102023994 AGCD01013129;XM_005378639 XP_005378696 MODEL 39132403 snrna U6 U6 spliceosomal RNA 8763089 protein-coding Ppp1r36 protein phosphatase 1 regulatory subunit 36 ASSOCIATED WITH autistic disorder (ortholog) NW_004955466 5312602 5339402 - 102017969 AGCD01050873;AGCD01050874;AGCD01050875;GBDF01176713;XM_013521899;XM_013521900;XM_013521901 XP_013377353;XP_013377354;XP_013377355 MODEL 8996765 ncrna LOC102023701 uncharacterized LOC102023701 NW_004955419 19326902 19332924 - 102023701 AGCD01020202;AGCD01020203;XR_001233564;XR_260646 MODEL 10222728 protein-coding LOC106149171 translation initiation factor IF-2-like NW_004955405 309304 313952 - 106149171 AGCD01004556;GBCE01131525;XM_013517280 XP_013372734 MODEL 9040548 protein-coding LOC102020436 ovostatin homolog NW_004955413 5685675 5730245 + 102020436 AGCD01013688;AGCD01013689;AGCD01013690;GBDI01013890;XM_005378884;XM_005378885 XP_005378941;XP_005378942 MODEL 8792851 pseudo LOC102028744 splicing factor 45 pseudogene NW_004955475 10889704 10890935 - 102028744 AGCD01055124 MODEL 8868605 pseudo LOC102006168 40S ribosomal protein S2 pseudogene NW_004955442 9115157 9116092 + 102006168 AGCD01037662 MODEL 8999846 protein-coding LOC102023997 uncharacterized protein C11orf91 homolog NW_004955468 4813513 4814537 + 102023997 AGCD01051922;GBDF01002276;XM_005400067;XM_005400068;XM_005400069;XM_013522385 XP_005400124;XP_005400125;XP_005400126;XP_013377839 MODEL 405822146 mirna MIR496 microRNA 496 8806182 protein-coding Tysnd1 trypsin like peroxisomal matrix peptidase 1 ENCODES a protein that exhibits identical protein binding (ortholog); protease binding (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN protein processing (ortholog); proteolysis (ortholog); regulation of fatty acid beta-oxidation (ortholog); FOUND IN peroxisome (ortholog) NW_004955437 21094831 21105495 + 102025842 AGCD01034896;AGCD01034897;GBCE01070028;GBDF01127607;XM_013516961 XP_013372415 MODEL 9017900 pseudo LOC102026010 40S ribosomal protein S20 pseudogene NW_004955484 9634928 9635406 + 102026010 AGCD01058424 MODEL 8792891 protein-coding Usf3 upstream transcription factor family member 3 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of epithelial to mesenchymal transition (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH CIC-rearranged sarcoma (ortholog) NW_004955427 13766188 13811253 - 102004951 AGCD01027257;AGCD01027258;AGCD01027259;GBDI01115209;XM_005386401;XM_013515210 XP_005386458;XP_013370664 MODEL 39133700 mirna MIR497 microRNA 497 8931274 protein-coding LOC102021280 serpin A11 NW_004955438 17885184 17897498 + 102021280 AGCD01035456;GBDJ01284370;XM_005390392 XP_005390449 MODEL 10301230 protein-coding Spegnb SPEG neighbor NW_004955453 13974409 13976490 - 106149770 AGCD01044855;GBCQ01102701;XM_013519765 XP_013375219 MODEL 8960796 protein-coding Tex264 testis expressed 264, ER-phagy receptor ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN protein-DNA covalent cross-linking repair (ortholog); reticulophagy (ortholog); FOUND IN autophagosome membrane (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955532 3278214 3306045 + 102018325 AGCD01070276;GBCQ01010042;GBDI01017838;XM_005410319 XP_005410376 MODEL 10335659 ncrna LOC106150012 uncharacterized LOC106150012 NW_004955402 9171471 9172006 - 106150012 AGCD01000207;GBCE01046074;XR_001236539 MODEL 8720063 protein-coding Gpr35 G protein-coupled receptor 35 ENCODES a protein that exhibits C-X-C chemokine receptor activity (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN chemokine-mediated signaling pathway (ortholog); cytoskeleton organization (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955542 851895 856688 - 102015450 AGCD01071481;GBCE01072681;XM_005411154 XP_005411211 MODEL 9010415 protein-coding Birc2 baculoviral IAP repeat containing 2 ENCODES a protein that exhibits FBXO family protein binding (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cellular response to tumor necrosis factor (ortholog); necroptotic process (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN FasL mediated signaling pathway; nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); asphyxiating thoracic dystrophy (ortholog); ataxia telangiectasia (ortholog); FOUND IN CD40 receptor complex (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955412 5658322 5685628 + 102012516 AGCD01012645;AGCD01012646;AGCD01012647;AGCD01012648;GBCB01002048;GBDI01082457;XM_013511020 XP_013366474 MODEL 8766476 protein-coding LOC102017911 butyrophilin-like protein 1 NW_004955437 927041 935952 - 102017911 AGCD01034174;AGCD01034175;GBCQ01010671;XM_013516773 XP_013372227 MODEL 9021627 protein-coding Icam5 intercellular adhesion molecule 5 INVOLVED IN phagocytosis (ortholog); regulation of synapse assembly (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog); postsynapse (ortholog) NW_004955495 1575669 1583904 + 102027202 AGCD01061703;GBBH01154350;XM_013505160 XP_013360614 MODEL 8856910 protein-coding LOC102012271 HAUS augmin-like complex subunit 8 NW_004956214 17 6395 + 102012271 AGCD01079252;GBDI01323698;GBDK01356093;XM_005415178;XM_005415179;XM_005415180;XM_005415181 XP_005415235;XP_005415236;XP_005415237;XP_005415238 MODEL 8967112 pseudo LOC102027043 protein FAM161A-like NW_004955406 26735159 26736307 + 102027043 AGCD01006263 MODEL 8991251 protein-coding LOC102025054 proline-rich protein 36-like NW_004955445 7712789 7715047 - 102025054 AGCD01039550;GBBH01012793;XM_013518357;XM_013518358 XP_013373811;XP_013373812 MODEL 8753559 pseudo LOC102015306 transcription initiation factor IIA subunit 2 pseudogene NW_004955413 33570657 33570987 - 102015306 AGCD01014679 MODEL 8919476 pseudo LOC102003314 40S ribosomal protein S17 pseudogene NW_004955406 36161717 36162486 - 102003314 AGCD01006543 MODEL 8758132 protein-coding LOC102009169 putative olfactory receptor 56B2 NW_004955414 21743001 21743960 + 102009169 AGCD01015431;XM_005380502 XP_005380559 MODEL 8787536 protein-coding Lpin3 lipin 3 ENCODES a protein that exhibits phosphatidate phosphatase activity (ortholog); ASSOCIATED WITH focal epilepsy (ortholog) NW_004955445 15600510 15616452 - 102029806 AGCD01039848;GBDI01324590;XM_013518277;XM_013518278;XM_013518279;XM_013518280;XM_013518281;XM_013518282 XP_013373731;XP_013373732;XP_013373733;XP_013373734;XP_013373735;XP_013373736 MODEL 8827770 protein-coding Tmx3 thioredoxin related transmembrane protein 3 ENCODES a protein that exhibits protein-disulfide reductase activity (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog); megacolon (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955402 52271705 52315795 - 102030257 AGCD01001321;AGCD01001322;AGCD01001323;GBCB01075702;XM_005373044 XP_005373101 MODEL 9049877 protein-coding LOC102017041 olfactory receptor 8K3-like NW_004955511 1294374 1296380 + 102017041 AGCD01066362;GBDF01038998;XM_005408229 XP_005408286 MODEL 8717861 ncrna LOC102012280 uncharacterized LOC102012280 NW_004955455 541374 542760 - 102012280 AGCD01045560;GBDF01021764;XR_262806 MODEL 9060204 ncrna LOC102015308 uncharacterized LOC102015308 NW_004955470 3790799 3796782 + 102015308 AGCD01052711;AGCD01052712;GBCB01023210;XR_263468 MODEL 9049082 ncrna LOC102008798 uncharacterized LOC102008798 NW_004955592 168536 235179 + 102008798 AGCD01076300;AGCD01076301;GBDF01077466;XR_001232541;XR_001232542;XR_265134;XR_265135;XR_265136 MODEL 8920562 protein-coding Xkr8 XK related 8 ENCODES a protein that exhibits phospholipid scramblase activity (ortholog); INVOLVED IN engulfment of apoptotic cell (ortholog); establishment of localization in cell (ortholog); neutrophil clearance (ortholog); FOUND IN plasma membrane (ortholog) NW_004955452 7141088 7148571 + 102018681 AGCD01044136;AGCD01044137;GBBH01041411;GBDF01195794;XM_013519543 XP_013374997 MODEL 10155514 pseudo LOC106146904 small nuclear ribonucleoprotein E pseudogene NW_004955502 6979575 6979849 + 106146904 AGCD01064427 MODEL 8747165 protein-coding Tmx4 thioredoxin related transmembrane protein 4 ASSOCIATED WITH ALAGILLE SYNDROME 1 (ortholog); congenital myasthenic syndrome 18 (ortholog); developmental and epileptic encephalopathy 12 (ortholog); FOUND IN endoplasmic reticulum (ortholog); nuclear inner membrane (ortholog) NW_004955415 18055257 18100705 - 102020441 AGCD01016439;GBCE01114792;XM_005380861 XP_005380918 MODEL 8776868 pseudo LOC102003040 peptidyl-prolyl cis-trans isomerase FKBP1A pseudogene NW_004955424 23204844 23205245 + 102003040 AGCD01025009 MODEL 8977831 pseudo LOC102018290 transmembrane protein 87B pseudogene NW_004955419 60235 292357 + 102018290 AGCD01019561;AGCD01019562;AGCD01019563;AGCD01019564;AGCD01019565;AGCD01019566;AGCD01019567;AGCD01019568;AGCD01019569;AGCD01019570;AGCD01019571 MODEL 8702310 protein-coding Tex28 testis expressed 28 ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog) NW_004955580 781339 791284 - 102009777 AGCD01075622;XM_005414223 XP_005414280 MODEL 9037052 protein-coding Spem1 spermatid maturation 1 INVOLVED IN flagellated sperm motility (ortholog); sperm individualization (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytoplasm (ortholog) NW_004955467 9503229 9504535 - 102015494 AGCD01051513;GBDJ01195970;XM_005399499;XM_013522043 XP_005399556;XP_013377497 MODEL 8952591 protein-coding Sdccag8 SHH signaling and ciliogenesis regulator SDCCAG8 INVOLVED IN establishment of cell polarity (ortholog); microtubule organizing center organization (ortholog); neuron migration (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 16 (ortholog); cystic kidney disease (ortholog); FOUND IN cell-cell junction (ortholog); centriolar satellite (ortholog); centriole (ortholog) NW_004955406 6694687 6909555 + 102028376 AGCD01005756;AGCD01005757;AGCD01005758;AGCD01005759;AGCD01005760;AGCD01005761;AGCD01005762;GBDF01119111;XM_005374761;XM_005374762;XM_013520309;XM_013520314;XM_013520316;XM_013520317;XM_013520318;XM_013520320 XP_005374818;XP_005374819;XP_013375763;XP_013375768;XP_013375770;XP_013375771;XP_013375772;XP_013375774 MODEL 10091713 ncrna LOC106146905 uncharacterized LOC106146905 NW_004955502 2306937 2331415 - 106146905 AGCD01064294;AGCD01064295;XR_001231531 MODEL 9043692 protein-coding Tafa3 TAFA chemokine like family member 3 INVOLVED IN negative regulation of microglial cell activation (ortholog); positive regulation of microglial cell activation (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autism spectrum disorder (ortholog); hereditary spastic paraplegia 47 (ortholog); FOUND IN extracellular space (ortholog) NW_004955435 16132345 16142291 + 102006816 AGCD01033296;GBCB01120795;GBDI01094729;XM_005388970 XP_005389027 MODEL 9012523 protein-coding Birc3 baculoviral IAP repeat containing 3 ENCODES a protein that exhibits protein-containing complex binding (ortholog); transferase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to tumor necrosis factor (ortholog); necroptotic process (ortholog); negative regulation of necroptotic process (ortholog); PARTICIPATES IN ceramide signaling pathway; FasL mediated signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); asphyxiating thoracic dystrophy (ortholog); ataxia telangiectasia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955412 5624865 5643520 + 102012174 AGCD01012644;GBDJ01123917;XM_005377975;XM_013511018;XM_013511019 XP_005378032;XP_013366472;XP_013366473 MODEL 8921630 ncrna LOC102028745 uncharacterized LOC102028745 NW_004955416 2060209 2069485 + 102028745 AGCD01016846;GBDF01110865;XR_260348 MODEL 8777151 protein-coding Tex29 testis expressed 29 ASSOCIATED WITH factor X deficiency (ortholog) NW_004955404 1405904 1745715 - 102014637 AGCD01003224;AGCD01003225;AGCD01003226;AGCD01003227;AGCD01003228;GBDK01178785;XM_013515713;XM_013515715 XP_013371167;XP_013371169 MODEL 9000697 protein-coding LOC102006174 lipopolysaccharide-binding protein-like NW_004955445 18292277 18311475 - 102006174 AGCD01039901;AGCD01039902;GBDK01402655;XM_005392587 XP_005392644 MODEL 9047052 pseudo LOC102023999 transcription elongation factor B polypeptide 1 pseudogene NW_004955471 5953821 5955145 - 102023999 AGCD01053115 MODEL 9001454 ncrna LOC102007612 uncharacterized LOC102007612 NW_004955451 5393479 5395031 - 102007612 AGCD01043166;GBDF01289099;XR_262582 MODEL 8907004 pseudo LOC102009179 60S ribosomal protein L23a pseudogene NW_004955418 372775 373635 - 102009179 AGCD01018673 MODEL 8723078 protein-coding Tyw3 tRNA-yW synthesizing protein 3 homolog NW_004955423 17932008 17952681 - 102027656 AGCD01023865;AGCD01023866;GBCQ01176880;XM_005385234;XM_005385235;XM_013514508 XP_005385291;XP_005385292;XP_013369962 MODEL 9016517 protein-coding Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 ENCODES a protein that exhibits beta-1 adrenergic receptor binding (ortholog); GTPase binding (ortholog); identical protein binding (ortholog); INVOLVED IN modulation of excitatory postsynaptic potential (ortholog); positive regulation of synaptic vesicle endocytosis (ortholog); regulation of synaptic vesicle endocytosis (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; ASSOCIATED WITH acute myeloid leukemia (ortholog); amenorrhea (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955495 4502173 4531758 + 102009625 AGCD01061926;AGCD01061927;GBDF01121282;XM_005405800;XM_005405801 XP_005405857;XP_005405858 MODEL 10299366 protein-coding Znf398 zinc finger protein 398 NW_004955491 4424602 4451026 + 106146677 AGCD01060435;GBDF01003110;GBDF01003121;XM_013504589 XP_013360043 MODEL 39133681 mirna MIR500B microRNA 500b 9010573 ncrna LOC102021281 uncharacterized LOC102021281 NW_004955440 12437369 12460160 - 102021281 AGCD01036429;AGCD01036430;GBDF01158322;XR_001235233;XR_001235234;XR_262018 MODEL 8968687 protein-coding Dgkd diacylglycerol kinase delta ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); identical protein binding (ortholog); kinase binding (ortholog); INVOLVED IN diacylglycerol catabolic process (ortholog); diacylglycerol metabolic process (ortholog); lipid phosphorylation (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); Joubert syndrome 22 (ortholog); Lennox-Gastaut syndrome (ortholog); FOUND IN clathrin-coated pit (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955453 2740922 2802669 - 102007619 AGCD01044636;AGCD01044637;GBCB01039518;GBCB01111507;XM_013519863;XM_013519864;XM_013519865;XM_013519866;XM_013519867 XP_013375317;XP_013375318;XP_013375319;XP_013375320;XP_013375321 MODEL 39132404 snrna U6 U6 spliceosomal RNA 8808181 protein-coding Znf407 zinc finger protein 407 ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); genetic disease (ortholog); intestinal volvulus (ortholog) NW_004955402 58036270 58507506 + 102013570 AGCD01001521;AGCD01001522;AGCD01001523;AGCD01001524;AGCD01001525;AGCD01001526;AGCD01001527;AGCD01001528;AGCD01001529;AGCD01001530;AGCD01001531;AGCD01001532;AGCD01001533;GBDF01280097;XM_005373080;XM_013511452 XP_005373137;XP_013366906 MODEL 9014010 protein-coding Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ENCODES a protein that exhibits 3' overhang single-stranded DNA endodeoxyribonuclease activity (ortholog); damaged DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN cell development (ortholog); cell population proliferation (ortholog); chromosome organization (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); alcohol use disorder (ortholog); FOUND IN chromosome, telomeric region (ortholog); ERCC4-ERCC1 complex (ortholog); nucleoplasm (ortholog) NW_004955555 2393510 2430180 - 102012252 AGCD01073149;AGCD01073150;AGCD01073151;AGCD01073152;AGCD01073153;GBCB01023844;XM_005412522;XM_005412523;XM_005412524;XM_013508709;XM_013508710 XP_005412579;XP_005412580;XP_005412581;XP_013364163;XP_013364164 MODEL 8979601 pseudo LOC102027046 mimitin, mitochondrial pseudogene NW_004955407 38191290 38193986 - 102027046 AGCD01007799 MODEL 8736958 protein-coding Ice1 interactor of little elongation complex ELL subunit 1 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN positive regulation of intracellular protein transport (ortholog); positive regulation of protein-containing complex assembly (ortholog); positive regulation of transcription by RNA polymerase III (ortholog); FOUND IN Cajal body (ortholog); euchromatin (ortholog); histone locus body (ortholog) NW_004955504 3409431 3465245 + 102023173 AGCD01064868;AGCD01064869;GBBH01050745;GBCE01064782;XM_013505895 XP_013361349 MODEL 8966410 protein-coding Vma21 vacuolar ATPase assembly factor VMA21 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); centronuclear myopathy X-linked (ortholog); FOUND IN lysosome (ortholog) NW_004955498 6874980 6887561 + 102005613 AGCD01063138;AGCD01063139;GBCB01057522;XM_005406432;XM_005406436 XP_005406489;XP_005406493 MODEL 8963115 protein-coding LOC102003315 keratin-associated protein 13-1-like NW_004955407 29787812 29788369 + 102003315 AGCD01007615;XM_005375630 XP_005375687 MODEL 8850330 ncrna LOC102026011 uncharacterized LOC102026011 NW_004955489 2649612 2673929 + 102026011 AGCD01059875;GBDJ01247666;XR_264016 MODEL 8794987 pseudo LOC102022956 nucleosome assembly protein 1-like 3 NW_004955525 4200838 4201542 - 102022956 AGCD01069180 MODEL 39131482 protein-coding BIRC5 baculoviral IAP repeat containing 5 8916038 protein-coding Ush1c USH1 protein network component harmonin ENCODES a protein that exhibits spectrin binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); brush border assembly (ortholog); equilibrioception (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); Autosomal Recessive Nonsyndromic Deafness 18 (ortholog); autosomal recessive nonsyndromic deafness 18A (ortholog); FOUND IN apical part of cell (ortholog); brush border (ortholog); cytoplasm (ortholog) NW_004955414 32303045 32351401 - 102011530 AGCD01015778;GBCQ01037186;XM_005380388;XM_005380389;XM_013512089;XR_260217 XP_005380445;XP_005380446;XP_013367543 MODEL 10085710 ncrna LOC106150015 uncharacterized LOC106150015 NW_004955460 152469 155457 + 106150015 AGCD01048337;GBDK01160015;XR_001236537 MODEL 8848941 protein-coding Ice2 interactor of little elongation complex ELL subunit 2 INVOLVED IN positive regulation of transcription by RNA polymerase III (ortholog); snRNA transcription by RNA polymerase II (ortholog); snRNA transcription by RNA polymerase III (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); Cocaine-Related Disorders (ortholog); colorectal cancer (ortholog); FOUND IN Cajal body (ortholog); cytosol (ortholog); euchromatin (ortholog) NW_004955450 14462730 14512708 + 102008485 AGCD01042746;AGCD01042747;AGCD01042748;AGCD01042749;GBCQ01066936;GBDJ01274437;XM_013518923 XP_013374377 MODEL 8924753 pseudo LOC102026012 dnaJ homolog subfamily B member 6-like NW_004955490 4325803 4326491 - 102026012 AGCD01060187 MODEL 8803215 pseudo LOC102022962 heterogeneous nuclear ribonucleoprotein H2-like NW_004955543 534456 538922 - 102022962 AGCD01071588;AGCD01071589 MODEL 39134219 mirna MIR501 microRNA 501 39132888 snrna U6 U6 spliceosomal RNA 8764864 protein-coding LOC102005878 RNA-binding protein NOB1-like NW_004957102 190 886 + 102005878 AGCD01080498;XM_005415224 XP_005415281 MODEL 10063073 ncrna LOC106150016 uncharacterized LOC106150016 NW_004955460 6779113 6790061 - 106150016 AGCD01048477;GBDF01303447;XR_001236538 MODEL 8709119 protein-coding LOC102007286 prolactin-like NW_004955576 959769 969369 + 102007286 AGCD01075349;GBDK01091111;XM_005413940 XP_005413997 MODEL 8732608 protein-coding LOC102025056 leukocyte immunoglobulin-like receptor subfamily A member 5 NW_004955567 1280423 1288253 - 102025056 AGCD01074465;AGCD01074466;GBDK01278933;XM_013509227 XP_013364681 MODEL 39133680 mirna MIR502 microRNA 502 8945201 protein-coding Klhl3 kelch like family member 3 ENCODES a protein that exhibits cullin family protein binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN distal tubule morphogenesis (ortholog); gene expression (ortholog); monoatomic ion homeostasis (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); autosomal dominant pseudohypoaldosteronism type 1 (ortholog); cerebral palsy (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytosol (ortholog) NW_004955408 32596497 32719967 - 102016451 AGCD01008849;AGCD01008850;AGCD01008851;AGCD01008852;AGCD01008853;GBDJ01164743;XM_005376502;XM_005376503;XM_005376504;XM_005376505;XM_005376506;XM_013506859 XP_005376559;XP_005376560;XP_005376561;XP_005376562;XP_005376563;XP_013362313 MODEL 8883968 protein-coding Tafa4 TAFA chemokine like family member 4 ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN macrophage chemotaxis (ortholog); phagocytosis (ortholog); regulation of membrane potential (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN extracellular space (ortholog); glutamatergic synapse (ortholog); synaptic vesicle membrane (ortholog) NW_004955421 18920551 19083792 + 102014368 AGCD01022061;GBBH01123399;XM_005383816;XM_013513639;XM_013513640 XP_005383873;XP_013369093;XP_013369094 MODEL 8707940 protein-coding LOC102013488 disintegrin and metalloproteinase domain-containing protein 29-like NW_004955466 20379 80896 + 102013488 AGCD01050641;AGCD01050642;AGCD01050643;AGCD01050644;AGCD01050645;AGCD01050646;AGCD01050647;AGCD01050648;AGCD01050649;XM_005399240 XP_005399297 MODEL 10361026 protein-coding LOC106150017 translation initiation factor IF-2-like NW_004955460 315054 315615 + 106150017 AGCD01048340;GBDF01113276;XM_013521284 XP_013376738 MODEL 8895235 pseudo LOC102003316 plasma membrane calcium-transporting ATPase 4 pseudogene NW_004955455 2108161 2110677 + 102003316 AGCD01045588 MODEL 9038190 ncrna LOC102008799 uncharacterized LOC102008799 NW_004955402 56514337 56517087 + 102008799 AGCD01001468;GBDF01212633;XR_259105 MODEL 8855261 ncrna LOC102007614 uncharacterized LOC102007614 NW_004956066 2115 8161 - 102007614 AGCD01078986;GBDI01339207;XR_001232606;XR_265204 MODEL 8718174 protein-coding Xkr9 XK related 9 ENCODES a protein that exhibits phospholipid scramblase activity (ortholog); INVOLVED IN phosphatidylserine exposure on apoptotic cell surface (ortholog); FOUND IN plasma membrane (ortholog) NW_004955444 9027662 9059911 - 102029130 AGCD01038953;AGCD01038954;AGCD01038955;AGCD01038956;GBCQ01014012;XM_005392101;XM_005392102;XM_013518143;XM_013518144;XM_013518145 XP_005392158;XP_005392159;XP_013373597;XP_013373598;XP_013373599 MODEL 8911630 protein-coding LOC102022588 olfactory receptor 51G2-like NW_004955414 20645409 20646350 + 102022588 AGCD01015385;XM_005380064 XP_005380121 MODEL 10338871 ncrna LOC106149172 uncharacterized LOC106149172 NW_004955438 16189469 16191330 - 106149172 AGCD01035397;GBDF01193746;XR_001235163 MODEL 8904118 pseudo LOC102017915 60S ribosomal protein L22-like NW_004955439 5269080 5272255 + 102017915 AGCD01035727 MODEL 8998251 ncrna LOC102020437 uncharacterized LOC102020437 NW_004955413 28925186 28946175 - 102020437 AGCD01014572;AGCD01014573;GBDK01298645;XR_001232988;XR_001232989;XR_001232990;XR_260121 MODEL 8722929 ncrna LOC102021283 uncharacterized LOC102021283 NW_004955441 9505985 9509614 + 102021283 AGCD01037022;GBCB01131781;XR_262065 MODEL 8720912 protein-coding Tnc tenascin C ENCODES a protein that exhibits integrin binding (ortholog); syndecan binding (ortholog); INVOLVED IN bud outgrowth involved in lung branching (ortholog); cellular response to prostaglandin D stimulus (ortholog); cellular response to retinoic acid (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH allergic conjunctivitis (ortholog); asbestosis (ortholog); asthma (ortholog); FOUND IN basement membrane (ortholog); collagen-containing extracellular matrix (ortholog); extracellular matrix of synaptic cleft (ortholog) NW_004955419 12569620 12662897 + 102005935 AGCD01019976;AGCD01019977;AGCD01019978;GBCE01000789;GBCQ01126227;XM_013513252;XM_013513253 XP_013368706;XP_013368707 MODEL 8823994 protein-coding LOC102008803 vomeronasal type-1 receptor 4-like NW_004955603 30312 31232 - 102008803 AGCD01076804;XM_005414841 XP_005414898 MODEL 8991351 protein-coding Nemf nuclear export mediator factor ENCODES a protein that exhibits alpha-aminoacyl-tRNA binding (ortholog); ribosomal large subunit binding (ortholog); INVOLVED IN CAT tailing (ortholog); nuclear export (ortholog); protein-containing complex assembly (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); cytosolic ribosome (ortholog); RQC complex (ortholog) NW_004955409 12855655 12901673 + 102029375 AGCD01009572;AGCD01009573;AGCD01009574;AGCD01009575;AGCD01009576;GBBH01057421;GBDF01162790;XM_013510340 XP_013365794 MODEL 10351415 ncrna LOC106146906 uncharacterized LOC106146906 NW_004955502 2359999 2404688 + 106146906 AGCD01064295;AGCD01064296;XR_001231532 MODEL 8946988 ncrna LOC102012281 uncharacterized LOC102012281 NW_004955456 10060816 10063097 + 102012281 AGCD01046517;GBDF01293625;XR_262891 MODEL 8818109 pseudo LOC102017043 transcription elongation factor A protein 3 pseudogene NW_004955431 14637746 14659053 + 102017043 AGCD01030334;AGCD01030335;AGCD01030336;AGCD01030337;XM_005387733 MODEL 8840481 ncrna LOC102027047 uncharacterized LOC102027047 NW_004955408 25619951 25622228 - 102027047 AGCD01008647;GBDF01111119;XR_259717 MODEL 8732450 pseudo LOC102021286 methylosome subunit pICln pseudogene NW_004955559 1489054 1489989 + 102021286 AGCD01073647;XM_005412899 MODEL 8839973 protein-coding Lama2 laminin subunit alpha 2 INVOLVED IN axon guidance (ortholog); positive regulation of synaptic transmission, cholinergic (ortholog); Schwann cell differentiation (ortholog); ASSOCIATED WITH Autosomal Recessive Limb-Girdle Muscular Dystrophy Type 23 (ortholog); Charcot-Marie-Tooth disease (ortholog); congenital merosin-deficient muscular dystrophy 1A (ortholog); FOUND IN basement membrane (ortholog); dendritic spine (ortholog); neuromuscular junction (ortholog) NW_004955436 9829777 10400101 + 102013645 AGCD01033770;AGCD01033771;AGCD01033772;AGCD01033773;AGCD01033774;AGCD01033775;AGCD01033776;AGCD01033777;AGCD01033778;AGCD01033779;AGCD01033780;AGCD01033781;GBCE01085149;XM_005389182;XM_005389183;XM_005389185;XM_005389186 XP_005389239;XP_005389240;XP_005389242;XP_005389243 MODEL 8935405 protein-coding LOC102019530 olfactory receptor 2A12-like NW_004955537 2642133 2772590 - 102019530 AGCD01070933;AGCD01070934;AGCD01070935;AGCD01070936;AGCD01070937;AGCD01070938;GBDF01080801;GBDF01080802;XM_005410629 XP_005410686 MODEL 8789275 protein-coding Tnf tumor necrosis factor ENCODES a protein that exhibits cytokine activity (ortholog); death receptor agonist activity (ortholog); histone H3K9ac reader activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); antiviral innate immune response (ortholog); apoptotic signaling pathway (ortholog); PARTICIPATES IN ceramide signaling pathway; Fc epsilon receptor mediated signaling pathway; interleukin-23 signaling pathway; ASSOCIATED WITH otitis media; Streptococcal Infections; acne (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular region (ortholog) NW_004955437 117267 119899 + 102012472 AGCD01034101;GBDI01328104;XM_005389324 XP_005389381 MODEL 8781238 protein-coding LOC102009182 zinc finger protein 709-like NW_004955483 60152 101435 + 102009182 AGCD01057595;AGCD01057596;AGCD01057597;AGCD01057598;XM_005403269;XM_013503758 XP_005403326;XP_013359212 MODEL 8967982 protein-coding LOC102003044 olfactory receptor 8K3-like NW_004955511 1368604 1369545 + 102003044 AGCD01066365;XM_005407956 XP_005408013 MODEL 8857490 protein-coding LOC102006178 UDP-glucuronosyltransferase 2B17-like NW_004955447 3671283 3776024 + 102006178 AGCD01040635;AGCD01040636;AGCD01040637;AGCD01040638;AGCD01040639;AGCD01040640;AGCD01040641;AGCD01040642;AGCD01040643;AGCD01040644;AGCD01040645;AGCD01040646;AGCD01040647;AGCD01040648;AGCD01040649;AGCD01040650;AGCD01040651;AGCD01040652;AGCD01040653;AGCD01040654;AGCD01040655;AGCD01040656;AGCD01040657;AGCD01040658;AGCD01040659;AGCD01040660;GBCQ01008307;XM_005392814;XM_005392815;XM_013518531;XM_013518532 XP_005392871;XP_005392872;XP_013373985;XP_013373986 MODEL 8995071 protein-coding LOC102017048 metallothionein-2 NW_004955433 14362645 14363438 + 102017048 AGCD01031718;GBCE01002214;XM_005388355 XP_005388412 MODEL 8980768 protein-coding Ppp1r3a protein phosphatase 1 regulatory subunit 3A PARTICIPATES IN glycogen biosynthetic pathway; glycogen degradation pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; ASSOCIATED WITH diabetes mellitus (ortholog); hypoglycemia (ortholog); Insulin Resistance (ortholog) NW_004955432 19854649 19893148 - 102007460 AGCD01031193;GBCB01005118;XM_005388110;XM_005388111 XP_005388167;XP_005388168 MODEL 8835506 protein-coding LOC102013491 NACHT, LRR and PYD domains-containing protein 1-like NW_004955467 10981913 11033217 - 102013491 AGCD01051593;AGCD01051594;AGCD01051595;AGCD01051596;AGCD01051597;GBDK01014412;XM_013522161;XM_013522162;XM_013522163;XM_013522164 XP_013377615;XP_013377616;XP_013377617;XP_013377618 MODEL 8856463 protein-coding Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 ENCODES a protein that exhibits identical protein binding (ortholog); lipid binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to brain-derived neurotrophic factor stimulus (ortholog); dendrite extension (ortholog); lipid tube assembly (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; FOUND IN early endosome (ortholog); glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog) NW_004955434 20332727 20381320 + 102022955 AGCD01032615;AGCD01032616;GBCQ01093746;XM_013516394 XP_013371848 MODEL 39132405 snrna U6 U6 spliceosomal RNA 8920851 protein-coding Sde2 SDE2 telomere maintenance homolog ENCODES a protein that exhibits damaged DNA binding (ortholog); snoRNA binding (ortholog); INVOLVED IN cellular response to UV (ortholog); endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); mitotic G1 DNA damage checkpoint signaling (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955489 181425 210966 - 102009286 AGCD01059783;AGCD01059784;AGCD01059785;GBDF01044042;XM_005404490 XP_005404547 MODEL 8971979 ncrna LOC102022592 uncharacterized LOC102022592 NW_004955415 28798790 28804171 - 102022592 AGCD01016645;XR_260321 MODEL 9016153 pseudo LOC102017057 transcription intermediary factor 1-alpha-like NW_004955437 7031558 7039959 - 102017057 AGCD01034448 MODEL 39132890 snrna U6 U6 spliceosomal RNA 9027019 protein-coding Lpl lipoprotein lipase ENCODES a protein that exhibits apolipoprotein binding (ortholog); calcium ion binding (ortholog); heparan sulfate proteoglycan binding (ortholog); INVOLVED IN cellular response to fatty acid (ortholog); cellular response to nutrient (ortholog); cholesterol homeostasis (ortholog); PARTICIPATES IN D-glycericacidemia pathway; familial lipoprotein lipase deficiency pathway; glycerol kinase deficiency pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome 1 (ortholog); Alcoholic Liver Diseases (ortholog); Alzheimer's disease (ortholog); FOUND IN catalytic complex (ortholog); cell surface (ortholog); extracellular region (ortholog) NW_004955403 43646084 43672116 + 102023218 AGCD01002783;GBDI01018698;XM_005373625 XP_005373682 MODEL 9061084 protein-coding Xkrx XK related X-linked ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); developmental and epileptic encephalopathy 9 (ortholog) NW_004955503 7037200 7066070 - 102023378 AGCD01064776;AGCD01064777;AGCD01064778;GBDI01286611;XM_005406943 XP_005407000 MODEL 8771261 protein-coding LOC102024620 CD209 antigen-like protein E NW_004955563 1541169 1545686 + 102024620 AGCD01074152;GBDK01148494;XM_013509177;XM_013509178;XM_013509179 XP_013364631;XP_013364632;XP_013364633 MODEL 39132407 snrna U6 U6 spliceosomal RNA 8859862 protein-coding Sdf2 stromal cell derived factor 2 ENCODES a protein that exhibits misfolded protein binding (ortholog); INVOLVED IN protein refolding (ortholog); FOUND IN endoplasmic reticulum (ortholog); protein folding chaperone complex (ortholog) NW_004955481 4497611 4506224 + 102027642 AGCD01056942;GBCQ01068706;XM_005402738 XP_005402795 MODEL 39132892 snrna U6 U6 spliceosomal RNA 9013604 pseudo LOC102021290 uncharacterized LOC102021290 NW_004955447 10934204 10968303 + 102021290 AGCD01040895 MODEL 8885187 protein-coding Lpo lactoperoxidase ENCODES a protein that exhibits peroxidase activity (ortholog); thiocyanate peroxidase activity (ortholog); INVOLVED IN defense response to bacterium (ortholog); detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); ASSOCIATED WITH Alzheimer's disease 1 (ortholog); hereditary breast ovarian cancer syndrome (ortholog); intellectual disability (ortholog); FOUND IN basolateral plasma membrane (ortholog); cytoplasm (ortholog); extracellular space (ortholog) NW_004955451 4754572 4769380 - 102028602 AGCD01043140;AGCD01043141;GBBH01077688;GBDI01358196;XM_005394031 XP_005394088 MODEL 8969745 ncrna LOC102024623 uncharacterized LOC102024623 NW_004955445 11329814 11335144 - 102024623 AGCD01039687;GBCE01071386;XR_001235598;XR_262329 MODEL 9063252 protein-coding Slc12a6 solute carrier family 12 member 6 ENCODES a protein that exhibits potassium ion transmembrane transporter activity (ortholog); potassium:chloride symporter activity (ortholog); protein kinase binding (ortholog); INVOLVED IN cell volume homeostasis (ortholog); cellular hypotonic response (ortholog); cellular hypotonic salinity response (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH agenesis of the corpus callosum with peripheral neuropathy (ortholog); Autosomal Recessive Dyskeratosis Congenita (ortholog); autosomal recessive dyskeratosis congenita 1 (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); basolateral plasma membrane (ortholog) NW_004955416 277215 375812 + 102019387 AGCD01016792;AGCD01016793;AGCD01016794;AGCD01016795;AGCD01016796;AGCD01016797;AGCD01016798;GBDF01049182;XM_005381156 XP_005381213 MODEL 9048262 protein-coding Klhl30 kelch like family member 30 ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog) NW_004955542 2418399 2427571 - 102027570 AGCD01071522;GBDI01064601;XM_005411196 XP_005411253 MODEL 8887047 protein-coding LOC102009953 uncharacterized LOC102009953 NW_004955489 8135465 8209866 - 102009953 AGCD01060001;AGCD01060002;AGCD01060003;AGCD01060004;AGCD01060005;AGCD01060006;AGCD01060007;GBDJ01241202;XM_013504450 XP_013359904 MODEL 8858868 protein-coding LOC102022594 protein FAM24A-like NW_004955477 1070372 1097654 - 102022594 AGCD01055502;GBDF01046801;XM_005401947;XM_005401948;XM_005401949;XM_013503111;XM_013503112;XM_013503113 XP_005402004;XP_005402005;XP_005402006;XP_013358565;XP_013358566;XP_013358567 MODEL 39132409 snrna U6 U6 spliceosomal RNA 39132894 snrna U6 U6 spliceosomal RNA 8703970 protein-coding Sdf2l1 stromal cell derived factor 2 like 1 ENCODES a protein that exhibits ATPase binding (ortholog); misfolded protein binding (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN cellular response to misfolded protein (ortholog); ERAD pathway (ortholog); protein refolding (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH chromosome 22q11.2 deletion syndrome, distal (ortholog); Crohn's disease (ortholog); DiGeorge syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum chaperone complex (ortholog); membrane (ortholog) NW_004955442 17468302 17470296 - 102015353 AGCD01037955;GBCB01077176;XM_005391702 XP_005391759 MODEL 10323091 ncrna LOC106149173 uncharacterized LOC106149173 NW_004955438 10754628 10788809 + 106149173 AGCD01035217;XR_001235164 MODEL 8866725 ncrna LOC102024625 uncharacterized LOC102024625 NW_004955448 8801047 8863960 - 102024625 AGCD01041450;AGCD01041451;AGCD01041452;GBDF01111681;XR_001235758;XR_262467 MODEL 9043808 ncrna LOC102009955 uncharacterized LOC102009955 NW_004955490 5851097 5894388 + 102009955 AGCD01060211;GBDK01242204;XR_001231206;XR_001231207;XR_264028 MODEL 8969000 pseudo LOC102020442 E3 ubiquitin-protein ligase Mdm2 pseudogene NW_004955415 10720955 10722285 - 102020442 AGCD01016138 MODEL 39132410 snrna U6 U6 spliceosomal RNA 8977477 protein-coding LOC102007292 uncharacterized protein C15orf26-like NW_004956049 3925 6331 - 102007292 AGCD01078945;GBBH01031873;GBDJ01352435;XM_013510219 XP_013365673 MODEL 8749865 protein-coding Ppp1r3b protein phosphatase 1 regulatory subunit 3B ENCODES a protein that exhibits [phosphorylase] phosphatase activity (ortholog); enzyme binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN negative regulation of glycogen catabolic process (ortholog); positive regulation of glycogen biosynthetic process (ortholog); regulation of glycogen biosynthetic process (ortholog); PARTICIPATES IN glycogen biosynthetic pathway; glycogen degradation pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN glycogen granule (ortholog); protein phosphatase type 1 complex (ortholog) NW_004955463 5208127 5220970 - 102019783 AGCD01049637;GBBH01150362;XM_005398360;XM_005398361 XP_005398417;XP_005398418 MODEL 39132896 snrna U6 U6 spliceosomal RNA 8702711 protein-coding LOC102025057 RBPJ-interacting and tubulin-associated protein 1-like NW_004955445 6768638 6786308 + 102025057 AGCD01039514;AGCD01039515;AGCD01039516;AGCD01039517;AGCD01039518;XM_013518238 XP_013373692 MODEL 8871427 pseudo LOC102017065 elongation factor 1-alpha 1-like NW_004955441 11209108 11211988 - 102017065 AGCD01037103 MODEL 39133623 mirna MIR505 microRNA 505 8785373 ncrna LOC102023704 uncharacterized LOC102023704 NW_004955486 1426768 1439006 - 102023704 AGCD01058955;GBBH01201228;XR_001231123;XR_001231124;XR_001231125;XR_001231126;XR_001231127;XR_001231128;XR_001231129;XR_001231130;XR_001231131;XR_263938 MODEL 9053768 pseudo LOC102024626 ATP-binding cassette sub-family D member 3-like NW_004955448 13855290 13858175 + 102024626 AGCD01041607 MODEL 39132411 snrna U6 U6 spliceosomal RNA 9043707 ncrna LOC102007293 uncharacterized LOC102007293 NW_004955404 27234470 27303032 - 102007293 AGCD01003918;AGCD01003919;AGCD01003920;AGCD01003921;AGCD01003922;GBDF01074909;XR_259322 MODEL 39132898 snrna U6 U6 spliceosomal RNA 8914688 protein-coding Ppp1r3c protein phosphatase 1 regulatory subunit 3C ENCODES a protein that exhibits [phosphorylase] phosphatase activity (ortholog); enzyme binding (ortholog); glycogen binding (ortholog); INVOLVED IN glycogen biosynthetic process (ortholog); glycogen metabolic process (ortholog); regulation of glycogen biosynthetic process (ortholog); PARTICIPATES IN glycogen biosynthetic pathway; glycogen degradation pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); prostate cancer (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN cytosol (ortholog); glycogen granule (ortholog) NW_004955425 1606069 1611001 + 102007916 AGCD01025235;AGCD01025236;GBDI01326617;XM_005385829 XP_005385886 MODEL 39133550 mirna MIR532 microRNA 532 8828990 protein-coding LOC102017066 testisin-like NW_004955442 14527681 14549641 - 102017066 AGCD01037824;AGCD01037825;AGCD01037826;GBDF01044821;XM_005391406;XM_013517777;XM_013517778;XM_013517779;XM_013517780 XP_005391463;XP_013373231;XP_013373232;XP_013373233;XP_013373234 MODEL 8947780 pseudo LOC102022595 zinc finger protein 606-like NW_004955416 31745756 31749064 - 102022595 AGCD01017769 MODEL 8920297 pseudo LOC102007294 serine/threonine/tyrosine-interacting protein pseudogene NW_004955453 2624180 2624993 + 102007294 AGCD01044634 MODEL 8861576 ncrna LOC102013495 uncharacterized LOC102013495 NW_004955468 8052975 8220399 + 102013495 AGCD01052019;AGCD01052020;AGCD01052021;AGCD01052022;AGCD01052023;GBCQ01143499;XR_001236948;XR_263403;XR_263404 MODEL 39132901 snrna U6 U6 spliceosomal RNA 8873700 protein-coding Vma22 vacuolar ATPase assembly factor VMA22 INVOLVED IN cellular response to increased oxygen levels (ortholog); intracellular iron ion homeostasis (ortholog); lysosomal lumen acidification (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type IIo (ortholog); genetic disease (ortholog); FOUND IN COPI-coated vesicle (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955459 25649 30215 - 102011743 AGCD01047923;GBDF01119172;XM_005397540 XP_005397597 MODEL 9049852 protein-coding Samd7 sterile alpha motif domain containing 7 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of gene expression (ortholog); negative regulation of gene expression, epigenetic (ortholog); retinal rod cell development (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 1 (ortholog); Fanconi-Bickel syndrome (ortholog); macular degeneration (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); PRC1 complex (ortholog) NW_004955420 161353 178768 + 102015524 AGCD01020535;XM_005382960;XM_013513564 XP_005383017;XP_013369018 MODEL 8744076 protein-coding Klhl31 kelch like family member 31 INVOLVED IN negative regulation of JNK cascade (ortholog); negative regulation of protein phosphorylation (ortholog); ASSOCIATED WITH centronuclear myopathy (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955411 2449241 2461779 + 102009362 AGCD01011509;AGCD01011510;GBCB01004346;XM_013510752;XM_013510753;XM_013510754 XP_013366206;XP_013366207;XP_013366208 MODEL 10275266 ncrna LOC106146907 uncharacterized LOC106146907 NW_004955502 3976128 3978135 + 106146907 AGCD01064323;GBCB01066530;XR_001231535;XR_001231536 MODEL 8769002 protein-coding Ppp1r3d protein phosphatase 1 regulatory subunit 3D ENCODES a protein that exhibits enzyme binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN regulation of glycogen biosynthetic process (ortholog); regulation of glycogen catabolic process (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; glycogen biosynthetic pathway; glycogen degradation pathway; FOUND IN glycogen granule (ortholog) NW_004955528 3804557 3807309 + 102014282 AGCD01069611;GBBH01225092;XM_013507523 XP_013362977 MODEL 8713505 protein-coding Gpr37 G protein-coupled receptor 37 ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); heat shock protein binding (ortholog); Hsp70 protein binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); cellular response to reactive oxygen species (ortholog); dendrite development (ortholog); ASSOCIATED WITH Lewy body dementia (ortholog); malignant mesothelioma (ortholog); Parkinson's disease (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955479 6061424 6080129 - 102017872 AGCD01056375;GBDF01251628;XM_005402343 XP_005402400 MODEL 10332487 ncrna LOC106149174 uncharacterized LOC106149174 NW_004955438 8363666 8374286 - 106149174 AGCD01035159;XR_001235166 MODEL 8789423 ncrna LOC102019531 uncharacterized LOC102019531 NW_004955437 13535860 13540498 + 102019531 AGCD01034661;GBCE01038393;XR_001235077 MODEL 10356262 protein-coding LOC106150018 uncharacterized LOC106150018 NW_004955460 11102710 11108274 + 106150018 AGCD01048629;GBDI01167897;XM_013521289 XP_013376743 MODEL 9028731 pseudo LOC102006179 histidine triad nucleotide-binding protein 1 pseudogene NW_004955575 1174358 1174782 + 102006179 AGCD01075234 MODEL 8793455 protein-coding LOC102021298 putative V-set and immunoglobulin domain-containing-like protein IGHV4OR15-8 NW_004956458 3484 4133 + 102021298 AGCD01079630;XM_005415201 XP_005415258 MODEL 8872458 protein-coding LOC102023706 40S ribosomal protein S26-like NW_004955421 1824606 1825078 - 102023706 AGCD01021606;XM_005383660 XP_005383717 MODEL 39132412 snrna U6 U6 spliceosomal RNA 10345203 ncrna LOC106150019 uncharacterized LOC106150019 NW_004955460 11115100 11119671 + 106150019 AGCD01048629;XR_001236541 MODEL 8835917 ncrna LOC102028746 uncharacterized LOC102028746 NW_004955477 10717537 10733781 - 102028746 AGCD01055706;GBDF01013860;XR_263672 MODEL 8995647 protein-coding Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ENCODES a protein that exhibits 5'-3' DNA helicase activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN apoptotic process (ortholog); bone mineralization (ortholog); central nervous system myelin formation (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH acoustic neuroma (ortholog); acquired immunodeficiency syndrome (ortholog); acute leukemia (ortholog); FOUND IN CAK-ERCC2 complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955555 2355005 2369599 - 102009659 AGCD01073148;GBDF01126874;XM_005412511;XM_005412512;XM_013508701 XP_005412568;XP_005412569;XP_013364155 MODEL 8922686 protein-coding LOC102024001 mas-related G-protein coupled receptor member A-like NW_004955414 33461482 33462480 - 102024001 AGCD01015809;XM_005380535 XP_005380592 MODEL 39132413 snrna U6 U6 spliceosomal RNA 8879133 protein-coding LOC102027051 uncharacterized LOC102027051 NW_004955409 8394539 8397962 + 102027051 AGCD01009406;GBDF01189268;GBDF01189269;XM_013510072 XP_013365526 MODEL 8753426 pseudo LOC102009960 guanylate-binding protein 6-like NW_004955423 4772863 4789903 + 102009960 AGCD01023545 MODEL 8837689 protein-coding Xpa XPA, DNA damage recognition and repair factor ENCODES a protein that exhibits damaged DNA binding (ortholog); protein domain specific binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN DNA repair (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); multicellular organism growth (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); Cockayne syndrome (ortholog); congenital disorder of glycosylation Ii (ortholog); FOUND IN cytosol (ortholog); DNA replication factor A complex (ortholog); nuclear body (ortholog) NW_004955419 27751042 27774917 + 102023038 AGCD01020448;GBDJ01229564;XM_005382841;XR_260670 XP_005382898 MODEL 39132415 snrna U6 U6 spliceosomal RNA 8705375 protein-coding Vmac vimentin type intermediate filament associated coiled-coil protein FOUND IN type III intermediate filament (ortholog) NW_004955495 3553025 3556726 - 102021777 AGCD01061862;GBDJ01239546;XM_005405750;XM_005405751 XP_005405807;XP_005405808 MODEL 8997684 ncrna LOC102024629 uncharacterized LOC102024629 NW_004955450 2617199 2624097 + 102024629 AGCD01042389;AGCD01042390;AGCD01042391;GBDF01074668;XR_001235839 MODEL 8877913 ncrna LOC102009962 uncharacterized LOC102009962 NW_004955423 22423709 22437613 + 102009962 AGCD01023966;GBDF01176631;XR_260987 MODEL 39132416 snrna U6 U6 spliceosomal RNA 8904367 protein-coding Slc12a7 solute carrier family 12 member 7 ENCODES a protein that exhibits potassium:chloride symporter activity (ortholog); protein kinase binding (ortholog); INVOLVED IN cell volume homeostasis (ortholog); cellular response to glucose stimulus (ortholog); potassium ion import across plasma membrane (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant dyskeratosis congenita 2 (ortholog); dopamine transporter deficiency syndrome (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955504 529183 589728 - 102030334 AGCD01064822;AGCD01064823;GBBH01060650;XM_005407034;XM_005407035;XM_005407037;XM_013505890 XP_005407091;XP_005407092;XP_005407094;XP_013361344 MODEL 8939665 protein-coding LOC102017919 olfactory receptor 11G2-like NW_004955550 885332 886303 - 102017919 AGCD01072528;XM_005412039 XP_005412096 MODEL 8699521 protein-coding Tex30 testis expressed 30 ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Evans Syndrome, Immunodeficiency, and Premature Immunosenescence associated with Tripeptidyl-Peptidase II Deficiency (ortholog); holoprosencephaly 5 (ortholog) NW_004955404 8390635 8394761 + 102002987 AGCD01003352;GBDI01294125;GBDI01294139;XM_005374029 XP_005374086 MODEL 39132194 snrna U6 U6 spliceosomal RNA 8810083 protein-coding Nemp1 nuclear envelope integral membrane protein 1 INVOLVED IN erythrocyte enucleation (ortholog); erythrocyte maturation (ortholog); nuclear membrane organization (ortholog); ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); INTERSTITIAL LUNG AND LIVER DISEASE (ortholog); FOUND IN nuclear envelope (ortholog) NW_004955458 4802604 4817901 - 102019475 AGCD01047440;AGCD01047441;GBCE01131720;XM_005397340;XM_005397341;XM_005397342 XP_005397397;XP_005397398;XP_005397399 MODEL 8752588 ncrna LOC102018291 uncharacterized LOC102018291 NW_004955420 9727856 9731176 + 102018291 AGCD01020761;GBDF01025460;XR_001233744;XR_260688 MODEL 9005605 ncrna LOC102013496 uncharacterized LOC102013496 NW_004955414 14859238 14895910 - 102013496 AGCD01015161;GBDF01156200;XR_260169;XR_260170 MODEL 8728497 ncrna LOC102017922 uncharacterized LOC102017922 NW_004955557 454172 479709 - 102017922 AGCD01073244;GBDI01153372;XR_001232319;XR_264980 MODEL 8824021 protein-coding Birc6 baculoviral IAP repeat containing 6 ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (ortholog); ubiquitin conjugating enzyme activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); labyrinthine layer development (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH adrenocortical carcinoma (ortholog); autism spectrum disorder (ortholog); cholangiocarcinoma (ortholog); FOUND IN endosome (ortholog); membrane (ortholog); microtubule organizing center (ortholog) NW_004955441 740299 923920 + 102009992 AGCD01036733;AGCD01036734;AGCD01036735;AGCD01036736;AGCD01036737;AGCD01036738;AGCD01036739;AGCD01036740;GBDF01124876;XM_013517560;XM_013517561 XP_013373014;XP_013373015 MODEL 9062220 ncrna LOC102009188 uncharacterized LOC102009188 NW_004955420 29161260 29164099 + 102009188 AGCD01021493;GBDJ01119670;XR_260772 MODEL 8730526 protein-coding Samd8 sterile alpha motif domain containing 8 ENCODES a protein that exhibits ceramide phosphoethanolamine synthase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); ceramide phosphoethanolamine biosynthetic process (ortholog); regulation of ceramide biosynthetic process (ortholog); ASSOCIATED WITH Genitopatellar Syndrome (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955437 16900756 16969042 - 102028336 AGCD01034718;AGCD01034719;AGCD01034720;AGCD01034721;AGCD01034722;AGCD01034723;GBDF01153789;GBDI01243361;XM_005389922 XP_005389979 MODEL 39132195 snrna U6 U6 spliceosomal RNA 8836978 protein-coding Klhl32 kelch like family member 32 NW_004955411 22923576 23120303 + 102020096 AGCD01012101;AGCD01012102;GBDF01016307;XM_005377793;XM_005377794;XM_013510926;XM_013510927;XM_013510928;XM_013510929;XM_013510930;XM_013510931;XM_013510932 XP_005377850;XP_005377851;XP_013366380;XP_013366381;XP_013366382;XP_013366383;XP_013366384;XP_013366385;XP_013366386 MODEL 9012587 pseudo LOC102013497 programmed cell death protein 5 pseudogene NW_004955414 20055216 20055636 - 102013497 AGCD01015354 MODEL 8756930 ncrna LOC102017923 uncharacterized LOC102017923 NW_004955559 666827 667985 + 102017923 AGCD01073607;GBBH01083168;XR_264997 MODEL 8842186 protein-coding LOC102005879 keratin, type I cytoskeletal 42-like NW_004955451 15945587 15951095 - 102005879 AGCD01043641;GBBH01099405;XM_005394414 XP_005394471 MODEL 8935443 protein-coding Xpc XPC complex subunit, DNA damage recognition and repair factor ENCODES a protein that exhibits damaged DNA binding (ortholog); DNA damage sensor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); mitotic intra-S DNA damage checkpoint signaling (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH 3p deletion syndrome (ortholog); amino acid metabolic disorder (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955429 16935901 16968285 - 102023284 AGCD01028842;AGCD01028843;GBBH01000085;GBCQ01035510;XM_005387261 XP_005387318 MODEL 8991500 protein-coding LOC102009190 uncharacterized LOC102009190 NW_004955420 26585304 26590726 - 102009190 AGCD01021418;GBBH01189737;XM_013513347 XP_013368801 MODEL 39132198 snrna U6 U6 spliceosomal RNA 8755936 protein-coding Sh3gl3 SH3 domain containing GRB2 like 3, endophilin A3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of clathrin-dependent endocytosis (ortholog); positive regulation of neuron differentiation (ortholog); regulation of clathrin-dependent endocytosis (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; ASSOCIATED WITH amenorrhea (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); early endosome (ortholog) NW_004955416 13151288 13297878 - 102030075 AGCD01017219;AGCD01017220;AGCD01017221;GBDF01002482;XM_005381462;XM_013512668;XM_013512669;XM_013512670 XP_005381519;XP_013368122;XP_013368123;XP_013368124 MODEL 8831642 pseudo LOC102022596 zinc finger protein 649 pseudogene NW_004955479 7209599 7211237 + 102022596 AGCD01056403 MODEL 8967317 pseudo LOC102007297 stromal membrane-associated protein 1 pseudogene NW_004955454 15354912 15356393 + 102007297 AGCD01045493 MODEL 9027800 protein-coding Tafa5 TAFA chemokine like family member 5 ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); negative regulation of vascular associated smooth muscle cell migration (ortholog); negative regulation of vascular associated smooth muscle cell proliferation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog) NW_004955413 32094438 32200276 + 102015305 AGCD01014637;AGCD01014638;GBCE01064957;GBDJ01030688;XM_005379522;XM_013511696 XP_005379579;XP_013367150 MODEL 8873065 pseudo LOC102020445 mortality factor 4-like protein 1 pseudogene NW_004955417 27320032 27321807 + 102020445 AGCD01018547 MODEL 8955599 protein-coding LOC102028749 solute carrier family 7 member 13-like NW_004955417 2944341 2988408 + 102028749 AGCD01017897;AGCD01017898;AGCD01017899;GBCQ01002404;XM_005381733 XP_005381790 MODEL 8821532 protein-coding Lama3 laminin subunit alpha 3 INVOLVED IN cell-cell adhesion (ortholog); endodermal cell differentiation (ortholog); hemidesmosome assembly (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); chronic ulcer of skin (ortholog); genetic disease (ortholog); FOUND IN adherens junction (ortholog); basement membrane (ortholog); endoplasmic reticulum (ortholog) NW_004955402 11980980 12362143 + 102020507 AGCD01000335;AGCD01000336;AGCD01000337;AGCD01000338;AGCD01000339;AGCD01000340;AGCD01000341;AGCD01000342;AGCD01000343;AGCD01000344;AGCD01000345;AGCD01000346;AGCD01000347;AGCD01000348;AGCD01000349;AGCD01000350;AGCD01000351;AGCD01000352;AGCD01000353;AGCD01000354;AGCD01000355;AGCD01000356;AGCD01000357;AGCD01000358;AGCD01000359;AGCD01000360;AGCD01000361;AGCD01000362;AGCD01000363;AGCD01000364;AGCD01000365;AGCD01000366;AGCD01000367;AGCD01000368;AGCD01000369;AGCD01000370;AGCD01000371;AGCD01000372;AGCD01000373;AGCD01000374;AGCD01000375;AGCD01000376;AGCD01000377;AGCD01000378;AGCD01000379;AGCD01000380;AGCD01000381;AGCD01000382;AGCD01000383;AGCD01000384;AGCD01000385;AGCD01000386;AGCD01000387;AGCD01000388;AGCD01000389;GBDJ01229317;GBDJ01229318;XM_013504299 XP_013359753 MODEL 8789204 ncrna LOC102009200 uncharacterized LOC102009200 NW_004955505 3088445 3096275 + 102009200 AGCD01065015;GBDF01203512;XR_264305 MODEL 8755059 protein-coding LOC102022966 importin subunit alpha-1-like NW_004955439 11273873 11279922 - 102022966 AGCD01035896;XM_013517299 XP_013372753 MODEL 8938535 protein-coding LOC102026013 GTPase IMAP family member 5 NW_004955491 5158948 5166924 + 102026013 AGCD01060472;GBDI01128266;XM_013504613;XM_013504614;XM_013504615;XM_013504616;XM_013504617 XP_013360067;XP_013360068;XP_013360069;XP_013360070;XP_013360071 MODEL 8949009 ncrna LOC102022600 uncharacterized LOC102022600 NW_004955419 746130 748094 - 102022600 AGCD01019608;XR_260597 MODEL 8782764 protein-coding LOC102007299 keratin-associated protein 20-2-like NW_004955407 30163388 30163546 + 102007299 AGCD01007628;XM_005375641 XP_005375698 MODEL 10313136 ncrna LOC106149175 uncharacterized LOC106149175 NW_004955439 11960941 11990624 + 106149175 AGCD01035930;AGCD01035931;XR_001235169 MODEL 9056455 protein-coding Dgke diacylglycerol kinase epsilon ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); kinase activity (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); lipid phosphorylation (ortholog); modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH atypical hemolytic-uremic syndrome (ortholog); genetic disease (ortholog); hemolytic-uremic syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955451 5966773 5988004 - 102013367 AGCD01043194;GBDF01052985;GBDF01154242;XM_005394069 XP_005394126 MODEL 8734472 protein-coding LOC102020447 olfactory receptor 56-like NW_004955418 30024353 30025291 - 102020447 AGCD01019497;XM_005382333 XP_005382390 MODEL 8898445 protein-coding Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 ENCODES a protein that exhibits fatty acid binding (ortholog); identical protein binding (ortholog); lysophosphatidic acid acyltransferase activity (ortholog); INVOLVED IN 'de novo' post-translational protein folding (ortholog); apoptotic process (ortholog); autophagic cell death (ortholog); PARTICIPATES IN mitochondria fission pathway; FOUND IN autophagosome membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955423 7393186 7414199 - 102020135 AGCD01023599;GBCB01019971;GBDF01006186;XM_013514504;XM_013514505;XM_013514506;XM_013514507 XP_013369958;XP_013369959;XP_013369960;XP_013369961 MODEL 9029030 ncrna LOC102021300 uncharacterized LOC102021300 NW_004955404 13235320 13236944 - 102021300 AGCD01003481;GBDF01280967;XR_259307 MODEL 8992073 ncrna LOC102024632 uncharacterized LOC102024632 NW_004955403 7768326 7771700 + 102024632 AGCD01001863;GBDF01305594;XR_259161 MODEL 8861449 protein-coding Tyw5 tRNA-yW synthesizing protein 5 ENCODES a protein that exhibits iron ion binding (ortholog); protein homodimerization activity (ortholog); tRNA binding (ortholog); INVOLVED IN wybutosine biosynthetic process (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955403 1326027 1351039 + 102008280 AGCD01001717;GBDF01248752;XM_005373255;XM_013511941 XP_005373312;XP_013367395 MODEL 8891761 pseudo LOC102022603 liver carboxylesterase 2-like NW_004955484 9789580 9816841 - 102022603 AGCD01058431;AGCD01058432 MODEL 8923859 protein-coding Samd9 sterile alpha motif domain containing 9 INVOLVED IN endosomal vesicle fusion (ortholog); ASSOCIATED WITH disease by infectious agent (ortholog); Fetal Growth Retardation (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955432 9957521 9972622 - 102006812 AGCD01030920;GBDK01359400;XM_005388025;XM_013516068;XM_013516069;XM_013516070;XM_013516071 XP_005388082;XP_013371522;XP_013371523;XP_013371524;XP_013371525 MODEL 8883960 protein-coding LOC102013498 vomeronasal type-1 receptor 90-like NW_004955414 15078937 15087520 + 102013498 AGCD01015176;XM_005380444 XP_005380501 MODEL 8857388 pseudo LOC102003317 mRNA-decapping enzyme 1A pseudogene NW_004955407 3818922 3820235 - 102003317 AGCD01006866 MODEL 8855936 pseudo LOC102005881 solute carrier family 35 member E3-like NW_004955451 2883147 2889213 - 102005881 AGCD01043026 MODEL 8728209 protein-coding Tnfaip1 TNF alpha induced protein 1 ENCODES a protein that exhibits cyclin binding (ortholog); identical protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN cell migration (ortholog); immune response (ortholog); negative regulation of Rho protein signal transduction (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); endosome (ortholog) NW_004955481 4786015 4799376 - 102008626 AGCD01056952;AGCD01056953;GBDJ01273979;XM_005402768;XM_005402769 XP_005402825;XP_005402826 MODEL 8842198 protein-coding Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); ATP hydrolysis activity (ortholog); promoter-specific chromatin binding (ortholog); INVOLVED IN apoptotic process (ortholog); DNA repair (ortholog); DNA topological change (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Arsenic Poisoning (ortholog); asphyxia neonatorum (ortholog); FOUND IN nucleoplasm (ortholog); transcription factor TFIID complex (ortholog); transcription factor TFIIH core complex (ortholog) NW_004955459 3210936 3238401 + 102005903 AGCD01048010;AGCD01048011;GBDJ01135141;XM_005397616;XM_005397617;XM_013521085 XP_005397673;XP_005397674;XP_013376539 MODEL 8735940 protein-coding Tex35 testis expressed 35 ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN microtubule cytoskeleton (ortholog); nucleus (ortholog) NW_004955406 17930460 17946364 + 102024085 AGCD01006016;GBDF01207826;XM_005374931;XM_005374933;XM_005374934;XM_013521079;XM_013521082;XR_001236493 XP_005374988;XP_005374990;XP_005374991;XP_013376533;XP_013376536 MODEL 8941527 ncrna LOC102005882 uncharacterized LOC102005882 NW_004955452 2251854 2256006 - 102005882 AGCD01043886;XR_262636 MODEL 8740452 pseudo LOC102013499 superoxide dismutase [Cu-Zn] pseudogene NW_004955472 2854745 2855177 + 102013499 AGCD01053492 MODEL 8919876 ncrna LOC102018298 uncharacterized LOC102018298 NW_004955494 7683032 7765368 - 102018298 AGCD01061554;AGCD01061555;GBCC01029716;XR_264118 MODEL 8895333 pseudo LOC102008806 28S ribosomal protein S36, mitochondrial pseudogene NW_004955451 2025250 2026677 + 102008806 AGCD01043004;XM_005393966 MODEL 8936891 protein-coding LOC102006182 arylacetamide deacetylase-like NW_004955448 3031084 3044420 + 102006182 AGCD01041300;AGCD01041301;GBBH01008796;XM_005393036 XP_005393093 MODEL 8792434 protein-coding Birc7 baculoviral IAP repeat containing 7 ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN lens development in camera-type eye (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of tumor necrosis factor-mediated signaling pathway (ortholog); ASSOCIATED WITH adrenocortical carcinoma (ortholog); autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955528 919246 922581 - 102010730 AGCD01069547;XM_013507431 XP_013362885 MODEL 10383227 ncrna LOC106150020 uncharacterized LOC106150020 NW_004955460 11158234 11160468 + 106150020 AGCD01048630;GBCQ01163568;XR_001236542 MODEL 8726228 ncrna LOC102013501 uncharacterized LOC102013501 NW_004955473 5281173 5291335 + 102013501 AGCD01053974;GBDI01312184;XR_001237117;XR_263581 MODEL 8782666 ncrna LOC102005885 uncharacterized LOC102005885 NW_004955405 12185694 12195667 + 102005885 AGCD01004849;GBDF01147002;XR_259373 MODEL 8890189 protein-coding Sdf4 stromal cell derived factor 4 ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); INVOLVED IN calcium-ion regulated exocytosis (ortholog); cerebellum development (ortholog); fat cell differentiation (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); Golgi lumen (ortholog) NW_004955486 9555773 9565310 + 102028975 AGCD01059191;GBBH01002257;XM_005404249;XM_005404251;XM_013504219 XP_005404306;XP_005404308;XP_013359673 MODEL 8952073 protein-coding LOC102007302 chromosome unknown open reading frame, human C7orf57 ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955456 5399326 5414002 - 102007302 AGCD01046327;GBDK01321191;XM_005396629 XP_005396686 MODEL 39132902 snrna U6 U6 spliceosomal RNA 8918901 pseudo LOC102008810 dnaJ homolog subfamily B member 6-like NW_004955403 27722644 27770774 - 102008810 AGCD01002323;AGCD01002324;AGCD01002325;AGCD01002326 MODEL 10262080 ncrna LOC106150021 uncharacterized LOC106150021 NW_004955460 11121174 11128894 - 106150021 AGCD01048629;XR_001236543;XR_001236544 MODEL 10167154 ncrna LOC106146908 uncharacterized LOC106146908 NW_004955502 7019956 7035338 + 106146908 AGCD01064428;GBCQ01052776;XR_001231537 MODEL 9043291 protein-coding Xpnpep1 X-prolyl aminopeptidase 1 ENCODES a protein that exhibits aminopeptidase activity (ortholog); manganese ion binding (ortholog); metalloaminopeptidase activity (ortholog); INVOLVED IN bradykinin catabolic process (ortholog); negative regulation of programmed cell death (ortholog); proteolysis (ortholog); PARTICIPATES IN kallikrein-kinin cascade pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955485 1436834 1501408 + 102019066 AGCD01058479;AGCD01058480;AGCD01058481;AGCD01058482;GBDI01236003;XM_005403764;XM_005403767;XM_005403768;XM_013504117;XM_013504118;XM_013504119;XM_013504120 XP_005403821;XP_005403824;XP_005403825;XP_013359571;XP_013359572;XP_013359573;XP_013359574 MODEL 8995528 protein-coding Znf408 zinc finger protein 408 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIc (ortholog); Congenital Prothrombin Deficiency (ortholog); exudative vitreoretinopathy (ortholog); FOUND IN nucleus (ortholog) NW_004955422 1373694 1377688 - 102004075 AGCD01022457;GBCQ01098795;XM_013513827 XP_013369281 MODEL 9014055 protein-coding LOC102019532 melanoma-associated antigen 10-like NW_004955539 704919 709030 - 102019532 AGCD01071189;GBDF01042091;XM_005410902 XP_005410959 MODEL 8861263 pseudo LOC102003320 UDP-N-acetylhexosamine pyrophosphorylase-like NW_004955460 10516392 10518340 - 102003320 AGCD01048586 MODEL 8891689 protein-coding Lpp LIM domain containing preferred translocation partner in lipoma PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); juvenile rheumatoid arthritis (ortholog); schizophrenia (ortholog); FOUND IN cytosol (ortholog); focal adhesion (ortholog); plasma membrane (ortholog) NW_004955420 19014398 19634102 - 102020674 AGCD01021053;AGCD01021054;AGCD01021055;AGCD01021056;AGCD01021057;AGCD01021058;AGCD01021059;AGCD01021060;AGCD01021061;AGCD01021062;AGCD01021063;AGCD01021064;AGCD01021065;AGCD01021066;GBDK01265106;XM_005383241;XM_005383243 XP_005383298;XP_005383300 MODEL 8729266 protein-coding Gpr37l1 G protein-coupled receptor 37 like 1 ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); G protein-coupled receptor activity (ortholog); peptide binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); Bergmann glial cell differentiation (ortholog); cellular response to reactive oxygen species (ortholog); ASSOCIATED WITH amenorrhea (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN plasma membrane (ortholog); receptor complex (ortholog) NW_004955406 38214490 38223281 + 102022161 AGCD01006597;GBBH01193715;XM_005375203 XP_005375260 MODEL 39132904 snrna U6 U6 spliceosomal RNA 8753680 protein-coding Ppp1r3e protein phosphatase 1 regulatory subunit 3E ENCODES a protein that exhibits [phosphorylase] phosphatase activity (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN positive regulation of glycogen biosynthetic process (ortholog); regulation of glycogen biosynthetic process (ortholog); regulation of glycogen catabolic process (ortholog); PARTICIPATES IN glycogen biosynthetic pathway; glycogen degradation pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Specific Granule Deficiency (ortholog); FOUND IN glycogen granule (ortholog) NW_004955409 37016851 37025125 + 102022055 AGCD01010488;AGCD01010489;GBDF01113415;XM_013510438;XM_013510439 XP_013365892;XP_013365893 MODEL 8729065 protein-coding Sdha succinate dehydrogenase complex flavoprotein subunit A ENCODES a protein that exhibits succinate dehydrogenase (quinone) activity (ortholog); INVOLVED IN nervous system development (ortholog); respiratory electron transport chain (ortholog); succinate metabolic process (ortholog); PARTICIPATES IN citric acid cycle pathway; electron transport chain pathway; fumaric aciduria pathway; ASSOCIATED WITH B-lymphoblastic leukemia/lymphoma with hypodiploidy (ortholog); Brain Neoplasms (ortholog); Breast Cancer, Familial (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nucleolus (ortholog) NW_004955504 36939 66507 + 102017478 AGCD01064814;GBDJ01073185;XM_005406984;XM_005406985;XM_005406986 XP_005407041;XP_005407042;XP_005407043 MODEL 405822153 mirna MIR539 microRNA 539 10101218 ncrna LOC106150022 uncharacterized LOC106150022 NW_004955460 8179 30699 + 106150022 AGCD01048326;AGCD01048327;AGCD01048328;AGCD01048329;GBDF01187346;XR_001236545;XR_001236546 MODEL 8936237 protein-coding Tex36 testis expressed 36 NW_004955477 3562667 3579915 - 102007762 AGCD01055556;AGCD01055557;GBDF01083461;XM_005401991 XP_005402048 MODEL 9031860 pseudo LOC102017068 probable global transcription activator SNF2L2 pseudogene NW_004955556 957616 958437 + 102017068 AGCD01073180 MODEL 9058040 protein-coding LOC102018299 olfactory receptor 7E24-like NW_004955495 664850 665820 - 102018299 AGCD01061648;XM_005405556 XP_005405613 MODEL 10173144 ncrna LOC106149176 uncharacterized LOC106149176 NW_004955439 14540987 14542524 + 106149176 AGCD01035981;GBDF01081546;XR_001235172 MODEL 39132201 snrna U6 U6 spliceosomal RNA 126903067 mirna MIR542 microRNA 542 8944093 protein-coding Ush1g USH1 protein network component sans ENCODES a protein that exhibits identical protein binding (ortholog); spectrin binding (ortholog); INVOLVED IN equilibrioception (ortholog); inner ear morphogenesis (ortholog); inner ear receptor cell differentiation (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); Autosomal Recessive Nonsyndromic Deafness 18 (ortholog); autosomal recessive nonsyndromic deafness 18A (ortholog); FOUND IN actin cytoskeleton (ortholog); Cajal body (ortholog); ciliary basal body (ortholog) NW_004955553 1788443 1795139 - 102016203 AGCD01072900;GBDI01165169;XM_005412261;XM_013508664 XP_005412318;XP_013364118 MODEL 10362905 ncrna LOC106150023 uncharacterized LOC106150023 NW_004955461 12937023 12973608 + 106150023 AGCD01049027;GBCE01106320;XR_001236547 MODEL 8795640 protein-coding Spem2 SPEM family member 2 ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog) NW_004955467 9493708 9500466 - 102014760 AGCD01051513;GBDF01002193;XM_005399496;XM_005399497;XM_013522025 XP_005399553;XP_005399554;XP_013377479 MODEL 8852152 pseudo LOC102027056 vomeronasal type-1 receptor 4-like NW_004955465 12806541 12807313 + 102027056 AGCD01050563;XM_005398996 MODEL 8838746 protein-coding Bivm basic, immunoglobulin-like variable motif containing ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Evans Syndrome, Immunodeficiency, and Premature Immunosenescence associated with Tripeptidyl-Peptidase II Deficiency (ortholog); holoprosencephaly 5 (ortholog) NW_004955404 8327295 8358453 - 102028925 AGCD01003350;AGCD01003351;GBDI01324218;XM_005374026;XM_005374027;XM_013515915 XP_005374083;XP_005374084;XP_013371369 MODEL 8984866 pseudo LOC102018302 nucleolar GTP-binding protein 2-like NW_004955423 15646160 15649256 - 102018302 AGCD01023812;AGCD01023813 MODEL 9031553 protein-coding Tafazzin tafazzin, phospholipid-lysophospholipid transacylase ENCODES a protein that exhibits 1-acylglycerophosphocholine O-acyltransferase activity (ortholog); INVOLVED IN cardiolipin acyl-chain remodeling (ortholog); cardiolipin metabolic process (ortholog); cristae formation (ortholog); PARTICIPATES IN cardiolipin metabolic pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955580 915668 921703 + 102029680 AGCD01075630;GBCQ01125460;XM_005414194;XR_001232478 XP_005414251 MODEL 8847320 protein-coding Vmo1 vitelline membrane outer layer 1 homolog ASSOCIATED WITH renal cell carcinoma (ortholog) NW_004955467 10197185 10210472 - 102014655 AGCD01051552;AGCD01051553;AGCD01051554;GBDJ01001411;XM_005399599;XM_013522216 XP_005399656;XP_013377670 MODEL 8892998 ncrna LOC102009202 uncharacterized LOC102009202 NW_004955508 2070981 2129438 - 102009202 AGCD01065779;AGCD01065780;AGCD01065781;AGCD01065782;GBDF01234233;XR_001231648;XR_001231649;XR_001231650;XR_001231651;XR_001231652;XR_264387 MODEL 10288224 protein-coding Znf41 zinc finger protein 41 ASSOCIATED WITH autistic disorder (ortholog); cognitive disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog) NW_004955516 611591 646109 + 106147076 AGCD01067389;AGCD01067390;GBCE01068608;XM_013506904 XP_013362358 MODEL 9057405 protein-coding Spen spen family transcriptional repressor ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); brain disease (ortholog); breast ductal carcinoma (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); transcription repressor complex (ortholog) NW_004955527 2279438 2343263 - 102020046 AGCD01069427;AGCD01069428;AGCD01069429;AGCD01069430;AGCD01069431;GBCB01056802;GBCQ01068573;XM_013507394 XP_013362848 MODEL 9040720 protein-coding LOC102027057 multidrug and toxin extrusion protein 1 NW_004955467 238300 282495 - 102027057 AGCD01051215;GBCC01032974;XM_005399261;XM_005399262;XM_005399264;XM_013522186;XM_013522188 XP_005399318;XP_005399319;XP_005399321;XP_013377640;XP_013377642 MODEL 8723404 protein-coding Xpnpep2 X-prolyl aminopeptidase 2 PARTICIPATES IN kallikrein-kinin cascade pathway; ASSOCIATED WITH acquired angioedema (ortholog); angioedema (ortholog); autistic disorder (ortholog); FOUND IN extracellular exosome (ortholog) NW_004955473 5248065 5274469 - 102013166 AGCD01053973;GBCQ01010121;XM_005401259 XP_005401316 MODEL 9055693 protein-coding LOC102012282 uroplakin-3b-like protein NW_004955456 15093798 15098628 + 102012282 AGCD01046662;GBDJ01177525;XM_005396824;XM_013520654 XP_005396881;XP_013376108 MODEL 39132905 snrna U6 U6 spliceosomal RNA 8933731 protein-coding Slc12a8 solute carrier family 12 member 8 ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Familial Thoracic Aortic Aneurysm 7 (ortholog) NW_004955427 24137420 24284485 - 102021263 AGCD01027502;AGCD01027503;AGCD01027504;AGCD01027505;AGCD01027506;AGCD01027507;GBBH01145884;XM_005386546 XP_005386603 MODEL 8979472 ncrna LOC102021311 uncharacterized LOC102021311 NW_004955407 37939818 37945531 - 102021311 AGCD01007789;XR_259622 MODEL 9056964 ncrna LOC102007618 uncharacterized LOC102007618 NW_004955452 2440793 2444300 - 102007618 AGCD01043895;GBDK01010271;XR_262640 MODEL 8717611 protein-coding Znf410 zinc finger protein 410 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of gene expression (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH intellectual disability (ortholog); primary ciliary dyskinesia 16 (ortholog) NW_004955523 1479042 1509889 - 102023066 AGCD01068522;GBBH01060511;XM_013507138;XM_013507139 XP_013362592;XP_013362593 MODEL 8939782 protein-coding LOC102024634 keratin-associated protein 10-11-like NW_004955728 8357 9502 - 102024634 AGCD01078208;XM_005415079 XP_005415136 MODEL 9065738 protein-coding Spesp1 sperm equatorial segment protein 1 INVOLVED IN acrosome reaction (ortholog); fertilization (ortholog); fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN acrosomal vesicle (ortholog); intercellular bridge (ortholog); microtubule cytoskeleton (ortholog) NW_004955450 7355144 7370413 - 102018245 AGCD01042536;GBDF01006111;XM_005393668;XM_005393669 XP_005393725;XP_005393726 MODEL 39132907 snrna U6 U6 spliceosomal RNA 9036894 ncrna LOC102008813 uncharacterized LOC102008813 NW_004955452 14619352 14627007 - 102008813 AGCD01044473;GBDF01305185;XR_262691 MODEL 39132908 snrna U6 U6 spliceosomal RNA 10065700 ncrna LOC106146909 uncharacterized LOC106146909 NW_004955502 7064258 7071931 + 106146909 AGCD01064429;GBCB01082599;XR_001231538 MODEL 8734243 protein-coding Znf414 zinc finger protein 414 ASSOCIATED WITH autistic disorder (ortholog); mucolipidosis type IV (ortholog) NW_004955563 920801 923423 + 102009999 AGCD01074096;GBDF01000362;XM_005413112 XP_005413169 MODEL 8794785 protein-coding Spg11 SPG11 vesicle trafficking associated, spatacsin ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN autophagosome organization (ortholog); axo-dendritic transport (ortholog); axon extension (ortholog); ASSOCIATED WITH AGAT deficiency (ortholog); amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 5 (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955416 11084448 11168478 - 102016589 AGCD01017174;AGCD01017175;AGCD01017176;AGCD01017177;AGCD01017178;GBCQ01152753;XM_005381419;XM_005381422;XM_013512469 XP_005381476;XP_005381479;XP_013367923 MODEL 8796947 pseudo LOC102017926 40S ribosomal protein S20 pseudogene NW_004955574 1288578 1289272 - 102017926 AGCD01075172 MODEL 8854911 protein-coding Klhl33 kelch like family member 33 NW_004955550 1239143 1247570 - 102024616 AGCD01072557;GBCB01021966;XM_005412060;XM_013508570 XP_005412117;XP_013364024 MODEL 8961815 protein-coding Tagap T cell activation RhoGTPase activating protein INVOLVED IN defense response to virus (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); COVID-19 (ortholog) NW_004955439 3479041 3488403 + 102009422 AGCD01035678;GBCB01086817;XM_005390512 XP_005390569 MODEL 39132912 snrna U6 U6 spliceosomal RNA 9028597 pseudo LOC102003054 importin subunit alpha-1 pseudogene NW_004955519 4042312 4044048 + 102003054 AGCD01067975 MODEL 39131929 snrna U1 U1 spliceosomal RNA 8959834 protein-coding Znf416 zinc finger protein 416 INVOLVED IN cardiac muscle hypertrophy (ortholog); microautophagy (ortholog); negative regulation of cell growth involved in cardiac muscle cell development (ortholog); FOUND IN nucleus (ortholog) NW_004955584 402957 410256 + 102007068 AGCD01075941;GBDF01158234;XM_013509858;XM_013509859 XP_013365312;XP_013365313 MODEL 8733744 protein-coding Tex38 testis expressed 38 NW_004955464 11658324 11659710 - 102014121 AGCD01050160;GBDF01010837;XM_005398656 XP_005398713 MODEL 8928724 pseudo LOC102017928 cyclin-G1 pseudogene NW_004955448 7013104 7014073 + 102017928 AGCD01041398 MODEL 8745195 protein-coding Nemp2 nuclear envelope integral membrane protein 2 ASSOCIATED WITH immunodeficiency 31B (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955403 8602056 8620417 + 102026707 AGCD01001884;GBDI01170310;XM_013512264 XP_013367718 MODEL 8845527 protein-coding Samd9l sterile alpha motif domain containing 9 like INVOLVED IN common myeloid progenitor cell proliferation (ortholog); endosomal vesicle fusion (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); microcephaly (ortholog); FOUND IN early endosome (ortholog); mitochondrion (ortholog) NW_004955432 10007631 10028989 - 102007360 AGCD01030921;AGCD01030922;AGCD01030923;GBDK01230974;XM_005388027;XM_005388029;XM_013516048;XM_013516049;XM_013516050;XM_013516051 XP_005388084;XP_005388086;XP_013371502;XP_013371503;XP_013371504;XP_013371505 MODEL 39132913 snrna U6 U6 spliceosomal RNA 8890267 pseudo LOC102003061 protein tilB homolog NW_004955435 18116016 18118858 - 102003061 AGCD01033389 MODEL 8771339 protein-coding Tnfaip2 TNF alpha induced protein 2 ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); focal segmental glomerulosclerosis (ortholog); immunodeficiency 132A (ortholog) NW_004955538 2159773 2173312 + 102005967 AGCD01071102;AGCD01071103;AGCD01071104;AGCD01071105;GBDF01047699;XM_005410764;XM_005410765 XP_005410821;XP_005410822 MODEL 8869535 protein-coding LOC102009964 vegetative cell wall protein gp1-like NW_004955495 4922998 4925566 + 102009964 AGCD01061964;GBCQ01088688;XM_005406155 XP_005406212 MODEL 9046826 protein-coding LOC102018303 zinc finger protein 69-like NW_004955495 7428743 7464274 - 102018303 AGCD01062137;AGCD01062138;AGCD01062139;AGCD01062140;AGCD01062141;GBDF01077565;GBDF01187778;XM_013505355 XP_013360809 MODEL 8924571 protein-coding Lama4 laminin subunit alpha 4 INVOLVED IN blood vessel development (ortholog); brown fat cell differentiation (ortholog); negative regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); autosomal recessive spinocerebellar ataxia 8 (ortholog); body dysmorphic disorder (ortholog); FOUND IN basement membrane (ortholog); neuromuscular junction (ortholog); synaptic cleft (ortholog) NW_004955526 4330388 4465810 + 102013861 AGCD01069366;AGCD01069367;GBBH01228905;GBCE01032722;XM_005409785 XP_005409842 MODEL 8826709 protein-coding Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ENCODES a protein that exhibits 3' overhang single-stranded DNA endodeoxyribonuclease activity (ortholog); damaged DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN cellular response to UV (ortholog); DNA repair (ortholog); double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); B-cell acute lymphoblastic leukemia (ortholog); breast carcinoma (ortholog); FOUND IN chromosome, telomeric region (ortholog); ERCC4-ERCC1 complex (ortholog); nucleotide-excision repair complex (ortholog) NW_004955442 4833453 4861201 - 102018773 AGCD01037543;AGCD01037544;AGCD01037545;GBDI01017324;XM_005391144;XM_013517964 XP_005391201;XP_013373418 MODEL 8946228 protein-coding Lpxn leupaxin ENCODES a protein that exhibits transcription coregulator activity (ortholog); INVOLVED IN negative regulation of B cell receptor signaling pathway (ortholog); negative regulation of cell adhesion (ortholog); regulation of cell adhesion mediated by integrin (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); focal adhesion (ortholog) NW_004955511 3459521 3500181 - 102003676 AGCD01066461;AGCD01066462;AGCD01066463;AGCD01066464;GBDJ01229881;XM_005408039;XM_005408040;XM_013506480;XM_013506481;XM_013506483 XP_005408096;XP_005408097;XP_013361934;XP_013361935;XP_013361937 MODEL 8929991 pseudo LOC102009965 high mobility group nucleosome-binding domain-containing protein 3 pseudogene NW_004955497 1469748 1473082 - 102009965 AGCD01062462;XM_005406365 MODEL 8739208 pseudo LOC102025063 calmodulin-like NW_004955447 17344080 17344572 - 102025063 AGCD01041118 MODEL 10169559 ncrna LOC106146910 uncharacterized LOC106146910 NW_004955407 13957673 13987231 + 106146910 AGCD01007160;XR_001231539 MODEL 8750792 protein-coding LOC102027060 taste receptor type 2 member 125-like NW_004955413 8315428 8322938 - 102027060 AGCD01013859;XM_005379637 XP_005379694 MODEL 8772698 ncrna LOC102018304 uncharacterized LOC102018304 NW_004955424 21693778 21701536 - 102018304 AGCD01024903;GBBH01046018;XR_261096 MODEL 8831957 protein-coding Lama5 laminin subunit alpha 5 ENCODES a protein that exhibits cell adhesion mediator activity (ortholog); integrin binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); branching involved in salivary gland morphogenesis (ortholog); branching involved in ureteric bud morphogenesis (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH benign familial hematuria (ortholog); bent bone dysplasia syndrome 1 (ortholog); bent bone dysplasia syndrome 2 (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular matrix of synaptic cleft (ortholog) NW_004955528 1713110 1753374 + 102029325 AGCD01069569;GBBH01032813;GBCE01053732;XM_013507490;XM_013507491;XM_013507492 XP_013362944;XP_013362945;XP_013362946 MODEL 9026467 protein-coding LOC102009968 translation initiation factor IF-2-like NW_004955426 21666851 21667753 - 102009968 AGCD01026595;XM_005386266 XP_005386323 MODEL 9049670 protein-coding Xpnpep3 X-prolyl aminopeptidase 3 ENCODES a protein that exhibits aminopeptidase activity (ortholog); manganese ion binding (ortholog); metalloaminopeptidase activity (ortholog); INVOLVED IN glomerular filtration (ortholog); protein processing (ortholog); proteolysis (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955413 26507860 26564105 + 102012848 AGCD01014446;AGCD01014447;AGCD01014448;AGCD01014449;AGCD01014450;GBDF01158243;XM_005379329;XM_005379330;XM_005379334;XM_013511350;XM_013511351 XP_005379386;XP_005379387;XP_005379391;XP_013366804;XP_013366805 MODEL 10374299 pseudo LOC106146911 uncharacterized LOC106146911 NW_004955503 5151694 5162672 + 106146911 AGCD01064696;AGCD01064697 MODEL 8763257 protein-coding LOC102025065 olfactory receptor 15-like NW_004955581 700753 701637 - 102025065 AGCD01075689;XM_013509729 XP_013365183 MODEL 9057637 pseudo LOC102027065 olfactory receptor 52E2-like NW_004955414 20652135 20653116 + 102027065 AGCD01015385 MODEL 9031305 protein-coding LOC102018305 melanoma-associated antigen 8-like NW_004955498 2272824 2273840 + 102018305 AGCD01062779;XM_005406469 XP_005406526 MODEL 8715783 protein-coding LOC102024636 keratin-associated protein 4-3-like NW_004955451 15571355 15602825 - 102024636 AGCD01043618;AGCD01043619;AGCD01043620;AGCD01043621;XM_013519179 XP_013374633 MODEL 8996396 protein-coding Klhl34 kelch like family member 34 ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog) NW_004955509 1985511 1990569 - 102009406 AGCD01065985;XM_005407819 XP_005407876 MODEL 8750352 protein-coding LOC102009970 olfactory receptor 5M10-like NW_004955511 1738489 1739436 + 102009970 AGCD01066378;XM_005407975 XP_005408032 MODEL 8848221 protein-coding Nenf neudesin neurotrophic factor ENCODES a protein that exhibits growth factor activity (ortholog); INVOLVED IN MAPK cascade (ortholog); negative regulation of appetite (ortholog); positive regulation of MAPK cascade (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular space (ortholog); mitochondrion (ortholog) NW_004955406 5025732 5030938 - 102014113 AGCD01005709;AGCD01005710;GBBH01033950;GBCQ01010802;XM_013520159 XP_013375613 MODEL 9030869 protein-coding Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 ENCODES a protein that exhibits deoxynucleoside triphosphate hydrolase activity (ortholog); dGTP binding (ortholog); dGTPase activity (ortholog); INVOLVED IN dATP catabolic process (ortholog); defense response to virus (ortholog); deoxyribonucleotide catabolic process (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 5 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955422 24714103 24780672 + 102028206 AGCD01023230;AGCD01023231;AGCD01023232;AGCD01023233;AGCD01023234;AGCD01023235;GBBH01005982;GBDF01177065;XM_013514015 XP_013369469 MODEL 8893791 protein-coding LOC102013509 uncharacterized LOC102013509 NW_004955485 6368092 6370491 + 102013509 AGCD01058616;XM_005403920 XP_005403977 MODEL 9067949 protein-coding LOC102003062 vomeronasal type-2 receptor 116-like NW_004955532 118728 136794 + 102003062 AGCD01070099;AGCD01070100;XM_013507568 XP_013363022 MODEL 9064871 protein-coding LOC102024639 keratin-associated protein 9-1-like NW_004955451 15671886 15690953 + 102024639 AGCD01043631;AGCD01043632;AGCD01043633;AGCD01043634;XM_013519129 XP_013374583 MODEL 8773304 pseudo LOC102022608 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform pseudogene NW_004955488 3365733 3367870 - 102022608 AGCD01059574;XM_005404459;XM_005404460;XM_005404461 MODEL 39132203 snrna U6 U6 spliceosomal RNA 8764736 protein-coding Klhl35 kelch like family member 35 ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog) NW_004955414 16421664 16436019 + 102025564 AGCD01015213;AGCD01015214;GBBH01127910;GBDF01209067;XM_005379886 XP_005379943 MODEL 8933390 pseudo LOC102024640 SLAIN motif-containing protein 2 pseudogene NW_004955404 30188761 30197752 + 102024640 AGCD01004000 MODEL 8705314 protein-coding Samm50 SAMM50 sorting and assembly machinery component INVOLVED IN cristae formation (ortholog); protein import into mitochondrial matrix (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; ASSOCIATED WITH intellectual disability (ortholog); metabolic dysfunction-associated steatotic liver disease (ortholog); Phelan-McDermid syndrome (ortholog); FOUND IN membrane (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955413 28901124 28925093 + 102020647 AGCD01014572;GBDF01046690;XM_005379452 XP_005379509 MODEL 8993979 protein-coding LOC102007626 keratin-associated protein 20-1-like NW_004955407 30169411 30169593 + 102007626 AGCD01007628;XM_005375642 XP_005375699 MODEL 8836314 protein-coding LOC102013512 olfactory receptor 4C12-like NW_004955422 189260 205015 - 102013512 AGCD01022401;GBDF01234708;XM_005383939 XP_005383996 MODEL 39131930 snrna U1 U1 spliceosomal RNA 8916280 protein-coding Blcap BLCAP apoptosis inducing factor INVOLVED IN apoptotic nuclear changes (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 5 (ortholog); congenital disorder of glycosylation (ortholog); focal epilepsy (ortholog) NW_004955445 19116945 19127469 + 102018038 AGCD01039911;GBDF01089233;XM_005392557;XR_001235621 XP_005392614 MODEL 9012132 ncrna LOC102024003 uncharacterized LOC102024003 NW_004955416 1130935 1134505 + 102024003 AGCD01016825;GBDF01211129;XR_260345 MODEL 8989680 protein-coding LOC102025067 chromosome unknown open reading frame, human C18orf54 INVOLVED IN negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH intellectual disability (ortholog) NW_004955402 38929921 38950437 + 102025067 AGCD01000972;GBDF01004732;XM_013510824;XM_013510830;XM_013510832 XP_013366278;XP_013366284;XP_013366286 MODEL 8732618 ncrna LOC102027066 uncharacterized LOC102027066 NW_004955415 21060741 21086458 - 102027066 AGCD01016500;GBDF01196268;XR_260308 MODEL 8735670 pseudo LOC102006187 serine/threonine/tyrosine-interacting protein pseudogene NW_004955588 34411 37242 - 102006187 AGCD01076076;AGCD01076077 MODEL 8878820 protein-coding Vmp1 vacuole membrane protein 1 ENCODES a protein that exhibits phospholipid scramblase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagosome membrane docking (ortholog); autophagy (ortholog); ASSOCIATED WITH Joubert syndrome 1 (ortholog); Monoclonal B-Cell Lymphocytosis (ortholog); FOUND IN autophagosome membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955451 3265109 3370610 - 102013573 AGCD01043051;AGCD01043052;AGCD01043053;GBCE01000488;XM_005393982 XP_005394039 MODEL 8732843 protein-coding Samsn1 SAM domain, SH3 domain and nuclear localization signals 1 ENCODES a protein that exhibits phosphotyrosine residue binding (ortholog); INVOLVED IN negative regulation of adaptive immune response (ortholog); negative regulation of B cell activation (ortholog); negative regulation of peptidyl-tyrosine phosphorylation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); COVID-19 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955407 16329838 16377763 - 102007298 AGCD01007213;AGCD01007214;GBDI01254171;XM_005375567;XM_013503803;XM_013503806;XR_001231017 XP_005375624;XP_013359257;XP_013359260 MODEL 9045983 ncrna LOC102012286 uncharacterized LOC102012286 NW_004955408 21941027 22001034 + 102012286 AGCD01008567;GBBH01167569;XR_001232370;XR_259698 MODEL 8892553 ncrna LOC102024006 uncharacterized LOC102024006 NW_004955417 28844701 28851338 - 102024006 AGCD01018588;GBDK01125490;XR_260512 MODEL 8700329 protein-coding LOC102007304 zinc finger protein 354B NW_004955408 1507667 1520239 - 102007304 AGCD01007961;AGCD01007962;GBCB01038326;GBCE01165511;XM_005376027;XM_013507968 XP_005376084;XP_013363422 MODEL 41410900 mirna MIR544A microRNA 544a 8751408 protein-coding Vnn1 vanin 1 ENCODES a protein that exhibits pantetheine hydrolase activity (ortholog); INVOLVED IN acute inflammatory response (ortholog); cell-cell adhesion (ortholog); chronic inflammatory response (ortholog); PARTICIPATES IN pantothenic acid metabolic pathway; ASSOCIATED WITH atopic dermatitis (ortholog); celiac disease (ortholog); Dyslipidemias (ortholog); FOUND IN extracellular space (ortholog) NW_004955436 13238307 13266800 - 102024718 AGCD01033856;GBDJ01018727;XM_005389217 XP_005389274 MODEL 8729523 protein-coding Slc12a9 solute carrier family 12 member 9 ASSOCIATED WITH Capillary Malformation-Arteriovenous Malformation 2 (ortholog); central conducting lymphatic anomaly (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955573 107337 125875 - 102011819 AGCD01074962;AGCD01074963;GBBH01142219;GBDJ01136651;XM_005413684;XM_013509455;XM_013509456;XM_013509457;XM_013509458;XM_013509459 XP_005413741;XP_013364909;XP_013364910;XP_013364911;XP_013364912;XP_013364913 MODEL 8840978 protein-coding LOC102019533 olfactory receptor 6B2-like NW_004955542 1313123 1324139 + 102019533 AGCD01071502;XM_005411170 XP_005411227 MODEL 8773079 protein-coding Ush2a usherin ENCODES a protein that exhibits collagen binding (ortholog); identical protein binding (ortholog); myosin binding (ortholog); INVOLVED IN establishment of localization in cell (ortholog); establishment of protein localization (ortholog); hair cell differentiation (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant nonsyndromic deafness 36 (ortholog); autosomal recessive nonsyndromic deafness (ortholog); FOUND IN apical plasma membrane (ortholog); basement membrane (ortholog); ciliary basal body (ortholog) NW_004955406 1837831 2499664 + 102012498 AGCD01005636;AGCD01005637;AGCD01005638;AGCD01005639;AGCD01005640;AGCD01005641;AGCD01005642;AGCD01005643;AGCD01005644;AGCD01005645;AGCD01005646;AGCD01005647;AGCD01005648;AGCD01005649;AGCD01005650;GBCE01108384;GBCE01108396;XM_013519932;XM_013519934 XP_013375386;XP_013375388 MODEL 39132205 snrna U6 U6 spliceosomal RNA 8972168 pseudo LOC102003321 zinc finger protein 64 homolog NW_004955409 16616488 16619136 + 102003321 AGCD01009731 MODEL 8902492 ncrna LOC102019535 uncharacterized LOC102019535 NW_004955439 136492 145739 + 102019535 AGCD01035579;AGCD01035580;GBDI01211031;XR_001235216 MODEL 8802157 protein-coding LOC102013514 vomeronasal type-1 receptor 4-like NW_004955494 8280036 8280923 + 102013514 AGCD01061582;XM_005405545 XP_005405602 MODEL 8989272 protein-coding Klhl36 kelch like family member 36 ENCODES a protein that exhibits cullin family protein binding (ortholog); ASSOCIATED WITH persistent fetal circulation syndrome (ortholog); schizophrenia (ortholog) NW_004955541 205170 218943 + 102014711 AGCD01071347;GBCQ01059206;XM_005410963 XP_005411020 MODEL 8833658 protein-coding Lamb1 laminin subunit beta 1 ENCODES a protein that exhibits enzyme binding (ortholog); extracellular matrix structural constituent (ortholog); glycosphingolipid binding (ortholog); INVOLVED IN cell migration (ortholog); embryo implantation (ortholog); endodermal cell differentiation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Classical Lissencephalies and Subcortical Band Heterotopias (ortholog); FOUND IN basement membrane (ortholog); collagen-containing extracellular matrix (ortholog); extracellular matrix (ortholog) NW_004955410 12241235 12305433 - 102008605 AGCD01010850;AGCD01010851;GBCE01055047;XM_005377293 XP_005377350 MODEL 39132209 snrna U6 U6 spliceosomal RNA 8756023 protein-coding Ushbp1 USH1 protein network component harmonin binding protein 1 ENCODES a protein that exhibits PDZ domain binding (ortholog) NW_004955524 945044 954424 + 102004195 AGCD01068730;GBDK01008435;XM_005409518;XM_013507248;XM_013507249;XM_013507250 XP_005409575;XP_013362702;XP_013362703;XP_013362704 MODEL 8886162 protein-coding Spg21 SPG21 abhydrolase domain containing, maspardin ENCODES a protein that exhibits CD4 receptor binding (ortholog); INVOLVED IN collateral sprouting (ortholog); epidermal growth factor receptor signaling pathway (ortholog); gene expression (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); hereditary spastic paraplegia (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); trans-Golgi network transport vesicle (ortholog) NW_004955450 10424394 10455680 + 102012044 AGCD01042620;AGCD01042621;AGCD01042622;GBDF01127748;XM_005393738;XM_013518963 XP_005393795;XP_013374417 MODEL 8886179 protein-coding LOC102003326 histone H2A type 1-J-like NW_004955465 13124247 13124484 + 102003326 AGCD01050588;XM_005399005 XP_005399062 MODEL 8748365 pseudo LOC102019537 V-type proton ATPase subunit E 1-like NW_004955545 693641 698066 + 102019537 AGCD01071813 MODEL 9040004 ncrna LOC102021315 uncharacterized LOC102021315 NW_004955408 24229582 24231940 - 102021315 AGCD01008604;GBDF01157222;XR_001232408;XR_001232409;XR_259709 MODEL 8781105 protein-coding Blk BLK proto-oncogene, Src family tyrosine kinase ENCODES a protein that exhibits non-membrane spanning protein tyrosine kinase activity (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); peptidyl-tyrosine phosphorylation (ortholog); positive regulation of insulin secretion (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; glypican signaling pathway; ASSOCIATED WITH Atrioventricular Septal Defect 4 (ortholog); diabetes mellitus (ortholog); Kawasaki disease (ortholog) NW_004955403 52825397 52874007 + 102028368 AGCD01003019;AGCD01003020;GBBH01183458;XM_005373820;XM_005373821;XM_005373822;XM_005373823;XM_013514535 XP_005373877;XP_005373878;XP_005373879;XP_005373880;XP_013369989 MODEL 39132210 snrna U6 U6 spliceosomal RNA 8710333 protein-coding Klhl38 kelch like family member 38 ASSOCIATED WITH trichorhinophalangeal syndrome type I (ortholog) NW_004955540 2443230 2452037 - 102004118 AGCD01071321;GBCB01021997;XM_005410931 XP_005410988 MODEL 9042858 ncrna LOC102003065 uncharacterized LOC102003065 NW_004955437 17589746 17591956 + 102003065 AGCD01034751;GBDF01287696;XR_261886 MODEL 8813491 protein-coding Uso1 USO1 vesicle transport factor INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); Golgi organization (ortholog); membrane fusion (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); progressive myoclonus epilepsy (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); Golgi apparatus (ortholog) NW_004955474 1647670 1704869 + 102012088 AGCD01054263;AGCD01054264;AGCD01054265;GBCB01001570;GBDF01046855;XM_013502731 XP_013358185 MODEL 9010559 ncrna LOC102019538 uncharacterized LOC102019538 NW_004955441 8245514 8252301 - 102019538 AGCD01036978;GBDF01234852;XR_262058;XR_262059 MODEL 8953506 protein-coding LOC102007627 ral guanine nucleotide dissociation stimulator-like NW_004955407 35377264 35380004 - 102007627 AGCD01007740;GBDF01084243;XM_005375725;XM_013504566 XP_005375782;XP_013360020 MODEL 9006859 ncrna LOC102003067 uncharacterized LOC102003067 NW_004955438 9649804 9652236 + 102003067 AGCD01035184;GBDF01148894;XR_261923 MODEL 8934381 protein-coding Gpr39 G protein-coupled receptor 39 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adult feeding behavior (ortholog); cellular response to zinc ion (ortholog); cholesterol homeostasis (ortholog) NW_004955440 46648 235644 + 102028580 AGCD01036156;AGCD01036157;AGCD01036158;AGCD01036159;GBDJ01115961;XM_005390734;XM_005390735 XP_005390791;XP_005390792 MODEL 8912229 protein-coding Xpo1 exportin 1 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); nuclear export signal receptor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN cellular response to salt (ortholog); cellular response to triglyceride (ortholog); mRNA export from nucleus (ortholog); PARTICIPATES IN CRM1 export pathway; Hedgehog signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH amenorrhea (ortholog); atrial fibrillation (ortholog); colorectal cancer (ortholog); FOUND IN annulate lamellae (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955424 22370006 22420568 + 102022407 AGCD01024966;AGCD01024967;GBDF01082052;XM_005385738;XM_005385739 XP_005385795;XP_005385796 MODEL 9061789 protein-coding Klhl4 kelch like family member 4 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN centriolar satellite (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955525 1849428 1963168 + 102019316 AGCD01069065;AGCD01069066;AGCD01069067;AGCD01069068;AGCD01069069;GBBH01100983;XM_005409727;XM_005409728 XP_005409784;XP_005409785 MODEL 10293608 pseudo LOC106149177 40S ribosomal protein SA-like NW_004955439 1643848 1684082 - 106149177 AGCD01035622;AGCD01035623;AGCD01035624;AGCD01035625 MODEL 8985883 protein-coding Sh3glb2 SH3 domain containing GRB2 like, endophilin B2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN postsynaptic neurotransmitter receptor internalization (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955570 1370106 1379405 - 102025738 AGCD01074812;GBCE01028722;GBDJ01007498;XM_013509416;XM_013509417;XM_013509418;XM_013509419;XM_013509420;XM_013509421;XM_013509422;XM_013509423 XP_013364870;XP_013364871;XP_013364872;XP_013364873;XP_013364874;XP_013364875;XP_013364876;XP_013364877 MODEL 8963808 ncrna LOC102028751 uncharacterized LOC102028751 NW_004955418 21360211 21370271 + 102028751 AGCD01019267;GBDF01111321;XR_260577 MODEL 9066181 ncrna LOC102007630 uncharacterized LOC102007630 NW_004955457 12213711 12215439 + 102007630 AGCD01047004;GBCQ01183768;XR_262943 MODEL 8934089 protein-coding LOC102013519 probable N-acetyltransferase CML1 NW_004955424 12047830 12049545 + 102013519 AGCD01024593;GBCQ01036376;XM_005385553 XP_005385610 MODEL 8805423 protein-coding Tagln transgelin INVOLVED IN cellular response to platelet-derived growth factor stimulus (ortholog); cytoskeleton organization (ortholog); epithelial cell differentiation (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH aortic dissection (ortholog); Carotid Artery Injuries (ortholog); CD3epsilon deficiency (ortholog) NW_004955412 18523469 18529285 + 102025667 AGCD01012944;GBCE01122330;XM_005378201;XM_005378202 XP_005378258;XP_005378259 MODEL 8994491 protein-coding Sanbr SANT and BTB domain regulator of CSR ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN isotype switching (ortholog); ASSOCIATED WITH peroxisome biogenesis disorder 11A (ortholog) NW_004955424 22728802 22785374 - 102024931 AGCD01024983;AGCD01024984;AGCD01024985;AGCD01024986;AGCD01024987;GBDI01291851;GBDJ01419693;XM_013514723 XP_013370177 MODEL 8866063 protein-coding Klhl40 kelch like family member 40 INVOLVED IN negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); negative regulation of protein ubiquitination (ortholog); positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); genetic disease (ortholog); nemaline myopathy 8 (ortholog); FOUND IN A band (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955420 28117553 28122391 - 102024914 AGCD01021470;GBCB01006043;XM_005383531 XP_005383588 MODEL 8728817 pseudo LOC102007307 40S ribosomal protein S25-like NW_004955408 19623818 19624387 - 102007307 AGCD01008529 MODEL 8818004 ncrna LOC102013520 uncharacterized LOC102013520 NW_004955500 5962838 5972280 + 102013520 AGCD01063865;GBDF01213566;XR_264230 MODEL 8907471 protein-coding LOC102003327 uncharacterized LOC102003327 NW_004955466 5485952 5548346 + 102003327 AGCD01050881;AGCD01050882;GBDF01043768;XM_005399132;XM_005399133;XM_005399134;XM_005399135;XM_013522017;XM_013522018 XP_005399189;XP_005399190;XP_005399191;XP_005399192;XP_013377471;XP_013377472 MODEL 39132212 snrna U6 U6 spliceosomal RNA 39133657 mirna MIR582 microRNA 582 8865222 protein-coding LOC102021317 granzyme B-like NW_004955409 35631253 35633975 + 102021317 AGCD01010427;GBDJ01147919;XM_005376985 XP_005377042 MODEL 8929315 protein-coding Ppp1r3f protein phosphatase 1 regulatory subunit 3F ENCODES a protein that exhibits glycogen binding (ortholog); protein phosphatase binding (ortholog); INVOLVED IN regulation of glycogen (starch) synthase activity (ortholog); regulation of glycogen biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ortholog); FOUND IN membrane (ortholog) NW_004955543 750094 767894 + 102011247 AGCD01071600;GBCB01002712;XM_005411333;XM_005411334 XP_005411390;XP_005411391 MODEL 8976660 protein-coding Vopp1 VOPP1 WW domain binding protein ENCODES a protein that exhibits enzyme binding (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); autistic disorder (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); endosome (ortholog); late endosome (ortholog) NW_004955456 88525 181480 + 102003209 AGCD01046199;AGCD01046200;AGCD01046201;GBBH01031289;XM_005396876;XM_013520650;XM_013520651 XP_005396933;XP_013376104;XP_013376105 MODEL 8812191 pseudo LOC102018311 olfactory receptor 8K3-like NW_004955511 1346191 1347156 + 102018311 AGCD01066365 MODEL 9065783 protein-coding Ercc5 ERCC excision repair 5, endonuclease ENCODES a protein that exhibits bubble DNA binding (ortholog); damaged DNA binding (ortholog); DNA endonuclease activity (ortholog); INVOLVED IN base-excision repair, AP site formation (ortholog); determination of adult lifespan (ortholog); DNA repair (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); cerebrooculofacioskeletal syndrome 3 (ortholog); Cockayne syndrome (ortholog); FOUND IN DNA replication factor A complex (ortholog); nucleotide-excision repair complex (ortholog); nucleus (ortholog) NW_004955404 8294506 8321505 - 102028608 AGCD01003350;GBDK01132700;XM_005374021 XP_005374078 MODEL 8741987 pseudo LOC102003333 60S ribosomal protein L27 pseudogene NW_004955413 15155101 15155528 + 102003333 AGCD01014066 MODEL 8898464 ncrna LOC102021318 uncharacterized LOC102021318 NW_004955410 18989630 19019952 + 102021318 AGCD01011016;GBCB01067072;XR_259849 MODEL 8748522 protein-coding LOC102025068 tigger transposable element-derived protein 1-like NW_004955589 929222 930090 + 102025068 AGCD01076185;GBCE01110580;GBDI01331973;XM_013509949 XP_013365403 MODEL 8868564 ncrna LOC102003068 uncharacterized LOC102003068 NW_004955439 1703273 1722660 - 102003068 AGCD01035626;GBDF01124953;XR_001235210;XR_261961 MODEL 8907425 pseudo LOC102026017 acidic leucine-rich nuclear phosphoprotein 32 family member E pseudogene NW_004955422 22142218 22142933 - 102026017 AGCD01023146;XR_260934 MODEL 9007949 ncrna LOC102018312 uncharacterized LOC102018312 NW_004955430 19090204 19090891 + 102018312 AGCD01029707;GBDF01190178;XR_261433 MODEL 8797187 pseudo LOC102024009 prefoldin subunit 1 pseudogene NW_004955484 7047221 7048723 - 102024009 AGCD01058306 MODEL 8743958 protein-coding LOC102003334 uncharacterized LOC102003334 NW_004955470 2780581 2789641 + 102003334 AGCD01052682;GBDF01222195;XM_005400615;XM_005400616;XM_005400617;XM_005400618 XP_005400672;XP_005400673;XP_005400674;XP_005400675 MODEL 10352392 protein-coding LOC106146912 endogenous retrovirus group K member 25 Pol protein-like NW_004955503 5898083 5902387 + 106146912 AGCD01064726;XM_013505848 XP_013361302 MODEL 8731415 protein-coding Slc13a1 solute carrier family 13 member 1 ENCODES a protein that exhibits monoatomic anion:sodium symporter activity (ortholog); secondary active sulfate transmembrane transporter activity (ortholog); sodium:sulfate symporter activity (ortholog); INVOLVED IN sodium ion transport (ortholog); sulfate transmembrane transport (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955479 4697374 4775836 - 102012094 AGCD01056330;AGCD01056331;GBCQ01006342;XM_005402324 XP_005402381 MODEL 8820435 protein-coding Icmt isoprenylcysteine carboxyl methyltransferase ENCODES a protein that exhibits cAMP response element binding protein binding (ortholog); protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity (ortholog); INVOLVED IN bone mineralization (ortholog); C-terminal protein methylation (ortholog); CAAX-box protein maturation (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); endoplasmic reticulum (ortholog); large ribosomal subunit (ortholog) NW_004955486 6280838 6289584 + 102013419 AGCD01059117;GBDF01088371;XM_005404099 XP_005404156 MODEL 9056956 pseudo LOC102005895 mitochondrial fission factor-like NW_004955455 5401970 5404213 + 102005895 AGCD01045725 MODEL 9044566 protein-coding Blm BLM RecQ like helicase ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); 8-hydroxy-2'-deoxyguanosine DNA binding (ortholog); ATP binding (ortholog); INVOLVED IN alpha-beta T cell differentiation (ortholog); alpha-beta T cell proliferation (ortholog); cellular response to camptothecin (ortholog); PARTICIPATES IN DNA replication pathway; homologous recombination pathway of double-strand break repair; ASSOCIATED WITH Bloom syndrome (ortholog); Breast Cancer, Familial (ortholog); colorectal cancer (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955416 14814753 14899865 + 102015513 AGCD01017283;AGCD01017284;AGCD01017285;AGCD01017286;GBDF01222241;XM_005381505;XM_005381506;XM_013512656;XM_013512657 XP_005381562;XP_005381563;XP_013368110;XP_013368111 MODEL 8902345 protein-coding Usp1 ubiquitin specific peptidase 1 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); peptidase activity (ortholog); INVOLVED IN monoubiquitinated protein deubiquitination (ortholog); positive regulation of receptor signaling pathway via JAK-STAT (ortholog); protein deubiquitination (ortholog); ASSOCIATED WITH congenital disorder of glycosylation It (ortholog); Fanconi anemia (ortholog); intellectual disability (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955423 27236242 27254064 - 102011457 AGCD01024116;AGCD01024117;AGCD01024118;GBBH01227663;GBCB01058336;XM_013514387 XP_013369841 MODEL 10111422 pseudo LOC106146913 protein BEX5-like NW_004955503 8213364 8213615 - 106146913 AGCD01064812 MODEL 39131582 mirna MIR590 microRNA 590 8701738 protein-coding LOC102015309 olfactory receptor 52K1 NW_004955414 20126801 20127745 + 102015309 AGCD01015358;XM_005380048 XP_005380105 MODEL 8856558 pseudo LOC102027067 60S ribosomal protein L23a pseudogene NW_004955475 9000632 9001755 + 102027067 AGCD01055054 MODEL 8863113 protein-coding LOC102005897 keratin-associated protein 10-11-like NW_004955407 41627363 41628512 + 102005897 AGCD01007874;XM_005375888 XP_005375945 MODEL 10228614 pseudo LOC106146914 ATP-dependent RNA helicase DDX50 pseudogene NW_004955407 42719452 42721767 - 106146914 AGCD01007895 MODEL 8791048 protein-coding LOC102008817 C4b-binding protein alpha chain-like NW_004955406 42709359 42715864 + 102008817 AGCD01006714;GBBH01192869;XM_005375486 XP_005375543 MODEL 8886070 ncrna LOC102027076 uncharacterized LOC102027076 NW_004955489 3991209 4000973 - 102027076 AGCD01059896;GBCB01110160;XR_001231185;XR_264018 MODEL 8703468 protein-coding Ercc6 ERCC excision repair 6, chromatin remodeling factor ENCODES a protein that exhibits ATP binding (ortholog); ATP-dependent activity, acting on DNA (ortholog); ATP-dependent chromatin remodeler activity (ortholog); INVOLVED IN base-excision repair (ortholog); DNA damage checkpoint signaling (ortholog); DNA damage response (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH age related macular degeneration 5 (ortholog); Agenesis of Corpus Callosum (ortholog); arthrogryposis multiplex congenita (ortholog); FOUND IN B-WICH complex (ortholog); nuclear body (ortholog); nucleolus (ortholog) NW_004955556 745175 812215 + 102029672 AGCD01073179;GBCE01126926;XM_005412569 XP_005412626 MODEL 8970043 ncrna LOC102007631 uncharacterized LOC102007631 NW_004955408 21175728 21206688 - 102007631 AGCD01008553;GBDF01153618;XR_001232359;XR_001232366;XR_259693;XR_259694;XR_259695 MODEL 8799447 protein-coding LOC102025070 uncharacterized LOC102025070 NW_004955402 21982712 22029582 - 102025070 AGCD01000595;AGCD01000596;GBDI01122543;XM_013509229 XP_013364683 MODEL 8832907 ncrna LOC102009203 uncharacterized LOC102009203 NW_004955429 19713878 19748003 - 102009203 AGCD01028967;AGCD01028968;GBDK01115535;XR_001234525;XR_261366;XR_261367 MODEL 8903601 protein-coding Sap130 Sin3A associated protein 130 INVOLVED IN embryonic placenta development (ortholog); in utero embryonic development (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal dominant thrombophilia due to protein C deficiency (ortholog); congenital heart disease (ortholog); hypoplastic left heart syndrome (ortholog); FOUND IN nuclear speck (ortholog) NW_004955459 2529373 2602864 + 102019034 AGCD01047992;AGCD01047993;GBDI01221722;XM_013521047 XP_013376501 MODEL 39131931 snrna U1 U1 spliceosomal RNA 8763784 protein-coding Lrat lecithin retinol acyltransferase ENCODES a protein that exhibits O-acyltransferase activity (ortholog); O-palmitoyltransferase activity (ortholog); phosphatidylcholine-retinol O-acyltransferase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); lipid storage (ortholog); positive regulation of lipid transport (ortholog); PARTICIPATES IN altered retinoid cycle metabolic pathway; retinitis pigmentosa pathway; retinoic acid metabolic pathway; ASSOCIATED WITH breast ductal carcinoma (ortholog); celiac disease (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN endoplasmic reticulum (ortholog); multivesicular body (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955471 2603395 2610988 + 102015310 AGCD01053024;GBCQ01142329;GBDJ01353884;XM_005400870 XP_005400927 MODEL 9036121 ncrna LOC102013522 uncharacterized LOC102013522 NW_004955426 6475719 6492062 - 102013522 AGCD01026157;GBDF01145587;XR_261192 MODEL 8864745 pseudo LOC102007638 allograft inflammatory factor 1 pseudogene NW_004955464 13479825 13484167 - 102007638 AGCD01050284;AGCD01050285 MODEL 8927955 protein-coding LOC102009205 olfactory receptor 5AN1-like NW_004955511 3886762 3887700 - 102009205 AGCD01066481;XM_005408267 XP_005408324 MODEL 8883029 protein-coding Ercc6l ERCC excision repair 6 like, spindle assembly checkpoint helicase ENCODES a protein that exhibits DNA translocase activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); colorectal cancer (ortholog) NW_004955475 11596405 11629186 - 102012755 AGCD01055158;AGCD01055159;AGCD01055160;AGCD01055161;AGCD01055162;GBDI01367112;XM_005401684 XP_005401741 MODEL 8712256 protein-coding LOC102022609 putative MAGE domain-containing protein MAGEA13P NW_004955489 6761364 6855797 - 102022609 AGCD01059965;AGCD01059966;AGCD01059967;GBDF01303343;XM_013504466;XM_013504467 XP_013359920;XP_013359921 MODEL 8777259 pseudo LOC102022967 peptidyl-prolyl cis-trans isomerase A-like NW_004955441 936920 937475 + 102022967 AGCD01036742 MODEL 8754181 protein-coding Vpreb3 V-set pre-B cell surrogate light chain 3 ASSOCIATED WITH agammaglobulinemia 2 (ortholog); epilepsy (ortholog); schizophrenia (ortholog) NW_004955455 8483685 8485514 + 102013800 AGCD01045896;GBDI01077091;XM_005396427;XR_001236300 XP_005396484 MODEL 8891369 protein-coding Lamb2 laminin subunit beta 2 ENCODES a protein that exhibits integrin binding (ortholog); structural constituent of synapse-associated extracellular matrix (ortholog); INVOLVED IN astrocyte development (ortholog); axon extension involved in regeneration (ortholog); axon guidance (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); atypical hemolytic-uremic syndrome (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); FOUND IN basement membrane (ortholog); laminin complex (ortholog); laminin-3 complex (ortholog) NW_004955532 1115412 1127264 - 102009983 AGCD01070165;GBCC01019330;XM_005410192 XP_005410249 MODEL 8793170 ncrna LOC102012289 uncharacterized LOC102012289 NW_004955410 7716614 7721059 + 102012289 AGCD01010722;GBDK01172238;XR_259826 MODEL 8732234 protein-coding Znf423 zinc finger protein 423 ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); cerebellar granule cell precursor proliferation (ortholog); cilium assembly (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); cerebellar disease (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955433 7700965 8018437 - 102012795 AGCD01031574;AGCD01031575;AGCD01031576;AGCD01031577;AGCD01031578;GBDI01254311;XM_005388258;XM_013516276;XM_013516277;XM_013516278;XM_013516279;XM_013516280;XM_013516281;XM_013516282;XM_013516283 XP_005388315;XP_013371730;XP_013371731;XP_013371732;XP_013371733;XP_013371734;XP_013371735;XP_013371736;XP_013371737 MODEL 39132918 snrna U6 U6 spliceosomal RNA 39133704 mirna MIR592 microRNA 592 8970892 protein-coding Usp10 ubiquitin specific peptidase 10 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); molecular function inhibitor activity (ortholog); INVOLVED IN cellular response to interleukin-1 (ortholog); DNA damage response (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); ASSOCIATED WITH persistent fetal circulation syndrome (ortholog); schizophrenia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic ribosome (ortholog) NW_004955541 242182 296018 + 102015049 AGCD01071348;AGCD01071349;GBDJ01182975;XM_005410964;XM_005410965 XP_005411021;XP_005411022 MODEL 8832670 ncrna LOC102026018 uncharacterized LOC102026018 NW_004955495 1270624 1272616 + 102026018 AGCD01061678;GBDF01262339;XR_264132 MODEL 10084140 ncrna LOC106146915 uncharacterized LOC106146915 NW_004955504 6208155 6214962 + 106146915 AGCD01064918;XR_001231541 MODEL 8908413 protein-coding LOC102015312 olfactory receptor 481-like NW_004955414 23472089 23473030 + 102015312 AGCD01015499;XM_005380516 XP_005380573 MODEL 8769388 pseudo LOC102024011 ubiquitin-conjugating enzyme E2 D3 pseudogene NW_004955484 2154271 2155118 - 102024011 AGCD01058092 MODEL 8974223 protein-coding Tnfaip3 TNF alpha induced protein 3 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); identical protein binding (ortholog); K63-linked deubiquitinase activity (ortholog); INVOLVED IN B-1 B cell homeostasis (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to lipopolysaccharide (ortholog); PARTICIPATES IN nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH autoimmune disease (ortholog); breast cancer (ortholog); cholangiocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955436 21566591 21581551 - 102018764 AGCD01034056;GBBH01102942;XM_005389278;XM_013516683;XM_013516684 XP_005389335;XP_013372137;XP_013372138 MODEL 39133732 mirna MIR598 microRNA 598 8957830 protein-coding LOC102006191 zinc finger protein 449-like NW_004955602 489329 501914 + 102006191 AGCD01076788;AGCD01076789;XM_013510075 XP_013365529 MODEL 8729956 ncrna LOC102025076 uncharacterized LOC102025076 NW_004955405 30094101 30106864 + 102025076 AGCD01005263;GBDF01286792;XR_259413 MODEL 8747811 protein-coding Icos inducible T cell costimulator ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN cell-cell adhesion (ortholog); T cell costimulation (ortholog); T cell tolerance induction (ortholog); ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); arteriosclerosis (ortholog); autoimmune lymphoproliferative syndrome type 2B (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955457 10934390 10952318 - 102021098 AGCD01046960;GBDI01295537;XM_005397010;XM_005397011 XP_005397067;XP_005397068 MODEL 8938311 protein-coding Usp11 ubiquitin specific peptidase 11 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); transcription corepressor binding (ortholog); INVOLVED IN protein deubiquitination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); bronchiectasis (ortholog); congenital disorder of glycosylation type IIm (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955516 840708 858201 - 102018963 AGCD01067403;AGCD01067404;GBDI01112326;XM_013506931 XP_013362385 MODEL 8700998 protein-coding Tex44 testis expressed 44 ASSOCIATED WITH hereditary spastic paraplegia (ortholog); Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog); FOUND IN cytoplasm (ortholog) NW_004955453 4108596 4110610 - 102007083 AGCD01044678;GBDF01007868;XM_005395707 XP_005395764 MODEL 8925949 protein-coding Blmh bleomycin hydrolase ENCODES a protein that exhibits aminopeptidase activity (ortholog); identical protein binding (ortholog); peptidase activity (ortholog); INVOLVED IN response to toxic substance (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH Alzheimer's disease 1 (ortholog); neurofibromatosis 1 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955481 3031283 3078678 + 102003869 AGCD01056891;AGCD01056892;AGCD01056893;GBDF01058051;XM_005402657;XM_005402658;XM_005402659 XP_005402714;XP_005402715;XP_005402716 MODEL 9032212 protein-coding LOC102007642 skin secretory protein xP2-like NW_004955467 8730837 8734563 + 102007642 AGCD01051466;AGCD01051467;GBDF01044983;XM_005399752 XP_005399809 MODEL 8931922 protein-coding Ercc6l2 ERCC excision repair 6 like 2 ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); DNA damage response (ortholog); double-strand break repair via classical nonhomologous end joining (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); bone marrow disease (ortholog); Bone Marrow Failure Syndrome 2 (ortholog); FOUND IN centrosome (ortholog); chromosome, centromeric region (ortholog); cytoplasm (ortholog) NW_004955422 22753008 22890339 + 102007243 AGCD01023165;AGCD01023166;AGCD01023167;AGCD01023168;AGCD01023169;AGCD01023170;AGCD01023171;AGCD01023172;GBDJ01044876;XM_005384686;XM_013514250;XM_013514251;XM_013514252 XP_005384743;XP_013369704;XP_013369705;XP_013369706 MODEL 8802976 ncrna LOC102012292 uncharacterized LOC102012292 NW_004955463 1605016 1606453 - 102012292 AGCD01049525;GBDJ01265798;XR_001236656 MODEL 8924737 protein-coding Icoslg inducible T cell costimulator ligand ENCODES a protein that exhibits identical protein binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN positive regulation of interleukin-4 production (ortholog); T follicular helper cell differentiation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autoimmune polyendocrine syndrome type 1 (ortholog); cataract 9 multiple types (ortholog); FOUND IN external side of plasma membrane (ortholog); intracellular membrane-bounded organelle (ortholog); plasma membrane (ortholog) NW_004955407 41190875 41197521 + 102022674 AGCD01007861;GBBH01118928;GBDF01041989;XM_013505381 XP_013360835 MODEL 8791457 protein-coding Vps11 VPS11 core subunit of CORVET and HOPS complexes ENCODES a protein that exhibits protein domain specific binding (ortholog); syntaxin binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN endosomal vesicle fusion (ortholog); endosome to lysosome transport (ortholog); negative regulation of intracellular estrogen receptor signaling pathway (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN actin filament (ortholog); AP-3 adaptor complex (ortholog); CORVET complex (ortholog) NW_004955412 20161520 20190141 + 102024661 AGCD01012996;GBDF01128854;XM_005378298 XP_005378355 MODEL 39132919 snrna U6 U6 spliceosomal RNA 8980737 protein-coding Dgkg diacylglycerol kinase gamma ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); lipid binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); glycerolipid metabolic process (ortholog); lipid phosphorylation (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog) NW_004955420 21296515 21481651 + 102007235 AGCD01021134;AGCD01021135;AGCD01021136;AGCD01021137;AGCD01021138;GBBH01017583;XM_005383282;XM_005383283;XM_005383284 XP_005383339;XP_005383340;XP_005383341 MODEL 8742057 protein-coding LOC102007312 estradiol 17 beta-dehydrogenase 5-like NW_004955463 77186 79987 - 102007312 AGCD01049471;GBDJ01183249;XM_005398329 XP_005398386 MODEL 10320712 ncrna LOC106150024 uncharacterized LOC106150024 NW_004955461 8457281 8506691 - 106150024 AGCD01048928;AGCD01048929;XR_001236548;XR_001236549 MODEL 8817419 ncrna LOC102015314 uncharacterized LOC102015314 NW_004955416 14878846 14890874 - 102015314 AGCD01017286;GBCQ01113980;XR_260386 MODEL 39132921 snrna U6 U6 spliceosomal RNA 10292727 ncrna LOC106146916 uncharacterized LOC106146916 NW_004955504 7243247 7267024 - 106146916 AGCD01064941;AGCD01064942;GBDF01277463;XR_001231543;XR_001231544;XR_001231545 MODEL 8922679 protein-coding Ppp1r3g protein phosphatase 1 regulatory subunit 3G ENCODES a protein that exhibits glycogen binding (ortholog); protein phosphatase binding (ortholog); INVOLVED IN glucose homeostasis (ortholog); glycogen biosynthetic process (ortholog); positive regulation of glycogen (starch) synthase activity (ortholog); FOUND IN cytoplasm (ortholog); protein phosphatase type 1 complex (ortholog) NW_004955465 8485273 8488181 - 102023127 AGCD01050474;AGCD01050475;GBBH01188992;GBDK01306249;XM_013521768 XP_013377222 MODEL 8732351 protein-coding Id1 inhibitor of DNA binding 1, HLH protein ENCODES a protein that exhibits identical protein binding (ortholog); proteasome binding (ortholog); transcription factor binding (ortholog); INVOLVED IN apoptotic process (ortholog); BMP signaling pathway (ortholog); cell-abiotic substrate adhesion (ortholog); PARTICIPATES IN interleukin-3 signaling pathway; ASSOCIATED WITH cholestasis (ortholog); disease of cellular proliferation (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955422 29337969 29339178 - 102019405 AGCD01023390;GBCE01002189;XM_005384905 XP_005384962 MODEL 8830199 pseudo LOC102024014 arginine--tRNA ligase, cytoplasmic pseudogene NW_004955421 2200401 2202377 - 102024014 AGCD01021620 MODEL 8987813 pseudo LOC102021323 BTB/POZ domain-containing protein KCTD2-like NW_004955464 12405610 12412983 - 102021323 AGCD01050195;AGCD01050196 MODEL 8902431 ncrna LOC102017938 uncharacterized LOC102017938 NW_004955667 50137 52914 - 102017938 AGCD01077927;AGCD01077928;GBDI01252369;XR_265181 MODEL 10231865 protein-coding LOC106150025 translation initiation factor IF-2-like NW_004955461 8035952 8076473 + 106150025 AGCD01048925;GBCB01018848;XM_013521304 XP_013376758 MODEL 8968914 pseudo LOC102015317 ATP-dependent RNA helicase DDX50 pseudogene NW_004955417 13310137 13312256 + 102015317 AGCD01018175 MODEL 8776985 pseudo LOC102009207 THO complex subunit 4-like NW_004955512 905817 925046 + 102009207 AGCD01066626 MODEL 9007603 protein-coding LOC102003071 vomeronasal type-1 receptor 4-like NW_004955558 653203 654063 + 102003071 AGCD01073381;XM_005412739 XP_005412796 MODEL 8985766 ncrna LOC102022968 uncharacterized LOC102022968 NW_004955441 15133568 15142886 - 102022968 AGCD01037242;GBDF01045786;XR_001235313;XR_001235314;XR_001235315 MODEL 9017246 ncrna LOC102019539 uncharacterized LOC102019539 NW_004955442 5261971 5277187 - 102019539 AGCD01037555;GBDF01056125;XR_262115 MODEL 8810142 protein-coding Lamb3 laminin subunit beta 3 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); endodermal cell differentiation (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 1A (ortholog); autistic disorder (ortholog); FOUND IN basement membrane (ortholog); laminin-5 complex (ortholog) NW_004955489 2547611 2603079 + 102024688 AGCD01059872;GBCQ01088494;XM_005404541;XM_005404542;XM_005404543 XP_005404598;XP_005404599;XP_005404600 MODEL 8752519 protein-coding Blnk B cell linker ENCODES a protein that exhibits enzyme binding (ortholog); lipid binding (ortholog); molecular condensate scaffold activity (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); intracellular signal transduction (ortholog); positive regulation of gene expression (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH agammaglobulinemia (ortholog); agammaglobulinemia 4 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955507 2398694 2466461 - 102015652 AGCD01065587;AGCD01065588;AGCD01065589;GBBH01092683;XM_005407570;XM_013506235;XM_013506236 XP_005407627;XP_013361689;XP_013361690 MODEL 10193916 ncrna LOC106150026 uncharacterized LOC106150026 NW_004955461 3038169 3047728 + 106150026 AGCD01048845;GBDF01089417;XR_001236553;XR_001236554 MODEL 8885512 ncrna LOC102008818 uncharacterized LOC102008818 NW_004955407 17028813 17032767 - 102008818 AGCD01007235;GBCB01103543;XR_259562 MODEL 8821895 protein-coding Xpo4 exportin 4 ENCODES a protein that exhibits nuclear export signal receptor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN positive regulation of protein export from nucleus (ortholog); protein export from nucleus (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 3B (ortholog); autosomal recessive nonsyndromic deafness 1A (ortholog); autosomal recessive nonsyndromic deafness 1B (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955497 1562945 1661379 - 102012451 AGCD01062465;AGCD01062466;GBDJ01386012;XM_005406312;XM_005406313;XM_013505464 XP_005406369;XP_005406370;XP_013360918 MODEL 8846351 pseudo LOC102007318 ubiquitin-conjugating enzyme E2 L3 pseudogene NW_004955412 10793664 10794367 - 102007318 AGCD01012785;XM_005378041;XM_005378042 MODEL 150537102 mirna MIR599 microRNA 599 8916076 protein-coding LOC102012303 NADH-cytochrome b5 reductase 3 ENCODES a protein that exhibits ADP binding (ortholog); AMP binding (ortholog); cytochrome-b5 reductase activity, acting on NAD(P)H (ortholog); INVOLVED IN nitric oxide biosynthetic process (ortholog); ASSOCIATED WITH breast cancer (ortholog); common variable immunodeficiency 4 (ortholog); Congenital Methemoglobinemia (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955413 27971140 27979905 - 102012303 AGCD01014539;GBCB01020264;GBDI01016413;XM_013511507 XP_013366961 MODEL 8780673 protein-coding LOC102006193 PRAME family member 22-like NW_004955615 261822 264278 + 102006193 AGCD01077252;XM_013510140 XP_013365594 MODEL 8805289 protein-coding Lamc1 laminin subunit gamma 1 ENCODES a protein that exhibits extracellular matrix structural constituent (ortholog); glycosphingolipid binding (ortholog); INVOLVED IN cell adhesion (ortholog); cell migration (ortholog); chromatin organization (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); aortic disease (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); FOUND IN basement membrane (ortholog); collagen-containing extracellular matrix (ortholog); laminin-1 complex (ortholog) NW_004955406 21863836 21990161 + 102021624 AGCD01006149;AGCD01006150;GBBH01077450;GBCB01039166;XM_005375017 XP_005375074 MODEL 8752326 protein-coding Lratd1 LRAT domain containing 1 INVOLVED IN cell morphogenesis (ortholog); cell motility (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog); schizophrenia (ortholog) NW_004955487 8452413 8454585 + 102010168 AGCD01059434;GBDF01089408;XM_005404438;XM_005404439 XP_005404495;XP_005404496 MODEL 8820474 protein-coding Sdhaf1 succinate dehydrogenase complex assembly factor 1 INVOLVED IN mitochondrial respiratory chain complex II assembly (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955468 2590592 2591669 - 102014656 AGCD01051827;GBDI01353347;XM_005399939 XP_005399996 MODEL 8732988 protein-coding Xpo5 exportin 5 ENCODES a protein that exhibits mRNA binding (ortholog); nuclear export signal receptor activity (ortholog); pre-miRNA binding (ortholog); INVOLVED IN pre-miRNA export from nucleus (ortholog); protein export from nucleus (ortholog); PARTICIPATES IN microRNA pathway; ribosome biogenesis pathway; ASSOCIATED WITH breast cancer (ortholog); colorectal cancer (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955437 9351045 9392396 - 102011478 AGCD01034527;AGCD01034528;GBDF01048032;XM_005389780;XM_013516820;XM_013516821 XP_005389837;XP_013372274;XP_013372275 MODEL 8938590 protein-coding Sh3kbp1 SH3 domain containing kinase binding protein 1 ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN cell migration (ortholog); cytoskeleton organization (ortholog); positive regulation of B cell activation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Coffin-Lowry syndrome (ortholog); Colonic Neoplasms (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); endocytic vesicle (ortholog) NW_004955509 6157 344930 - 102003043 AGCD01065924;AGCD01065925;AGCD01065926;AGCD01065927;AGCD01065928;AGCD01065929;AGCD01065930;GBBH01118244;GBCB01003048;XM_005407792 XP_005407849 MODEL 9060053 protein-coding Tex46 testis expressed 46 ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog) NW_004955452 3038467 3041193 - 102011394 AGCD01043910;GBDF01000402;XM_013519471 XP_013374925 MODEL 8753282 protein-coding Klhl41 kelch like family member 41 INVOLVED IN myofibril assembly (ortholog); protein ubiquitination (ortholog); pseudopodium assembly (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); genetic disease (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog) NW_004955449 5023362 5041006 - 102029459 AGCD01041906;GBCB01003153;XM_005393263 XP_005393320 MODEL 8808749 protein-coding Usp12 ubiquitin specific peptidase 12 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); deubiquitinase activity (ortholog); INVOLVED IN protein deubiquitination (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN cytoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955497 6524487 6613403 - 102029876 AGCD01062639;AGCD01062640;GBDK01080005;XM_005406352;XM_005406353 XP_005406409;XP_005406410 MODEL 8951104 ncrna LOC102024026 uncharacterized LOC102024026 NW_004955498 3548837 3565146 - 102024026 AGCD01062905;AGCD01062906;GBDF01286420;XR_264214 MODEL 8872093 protein-coding Id2 inhibitor of DNA binding 2 ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); transcription regulator inhibitor activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN adipose tissue development (ortholog); adult locomotory behavior (ortholog); astrocyte differentiation (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Arsenic Poisoning (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955487 878326 880783 - 102009189 AGCD01059234;GBDJ01312094;XM_005404347;XM_005404348 XP_005404404;XP_005404405 MODEL 9049118 protein-coding LOC102009973 olfactory receptor 10AG1-like NW_004955511 872782 873738 - 102009973 AGCD01066345;XM_005408215 XP_005408272 MODEL 8727687 protein-coding LOC102017939 olfactory receptor 6C75-like NW_004956324 2385 3341 + 102017939 AGCD01079433;XM_005415195 XP_005415252 MODEL 8869879 protein-coding Lamc2 laminin subunit gamma 2 ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN positive regulation of cell migration (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); amelogenesis imperfecta (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); FOUND IN basement membrane (ortholog); cell cortex (ortholog); extracellular space (ortholog) NW_004955406 22020330 22074271 + 102022159 AGCD01006150;AGCD01006151;GBDI01105477;XM_005375020 XP_005375077 MODEL 8781246 ncrna LOC102009208 uncharacterized LOC102009208 NW_004955514 376958 384322 + 102009208 AGCD01067008;AGCD01067009;GBDF01062503;XR_264490 MODEL 8998850 pseudo LOC102013523 heat shock protein HSP 90-alpha pseudogene NW_004955426 26341646 26343835 - 102013523 AGCD01026756 MODEL 8704062 pseudo LOC102019544 40S ribosomal protein S6 pseudogene NW_004955568 1456206 1472192 + 102019544 AGCD01074545 MODEL 8864207 protein-coding Klhl42 kelch like family member 42 ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); protein polyubiquitination (ortholog); regulation of microtubule-based process (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog) NW_004955505 7046274 7078175 - 102019934 AGCD01065194;AGCD01065195;GBCQ01032727;XM_005407157 XP_005407214 MODEL 9036988 protein-coding Usp13 ubiquitin specific peptidase 13 ENCODES a protein that exhibits BAT3 complex binding (ortholog); cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); maintenance of unfolded protein (ortholog); positive regulation of ERAD pathway (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); Currarino syndrome (ortholog); skin disease (ortholog) NW_004955420 8835858 8919837 + 102014251 AGCD01020737;GBCB01005189;GBCE01111516;XM_005383048 XP_005383105 MODEL 8777993 protein-coding Vps13a vacuolar protein sorting 13 homolog A INVOLVED IN adult locomotory behavior (ortholog); autophagy (ortholog); brain-derived neurotrophic factor receptor signaling pathway (ortholog); ASSOCIATED WITH choreaacanthocytosis (ortholog); choreatic disease (ortholog); genetic disease (ortholog); FOUND IN dense core granule (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955512 2037803 2267197 - 102027665 AGCD01066665;AGCD01066666;AGCD01066667;AGCD01066668;AGCD01066669;AGCD01066670;GBCE01029383;GBDF01086717;XM_005408304;XM_013506545;XM_013506546 XP_005408361;XP_013361999;XP_013362000 MODEL 10287363 ncrna LOC106150027 uncharacterized LOC106150027 NW_004955461 14625185 14628313 - 106150027 AGCD01049057;GBDK01101991;XR_001236556 MODEL 8920744 ncrna LOC102028754 uncharacterized LOC102028754 NW_004955419 28603928 28610615 + 102028754 AGCD01020470;GBDF01015141;XR_260671 MODEL 8801097 protein-coding Tnfaip6 TNF alpha induced protein 6 ENCODES a protein that exhibits calcium ion binding (ortholog); carboxylesterase activity (ortholog); fibronectin binding (ortholog); INVOLVED IN fibronectin fibril organization (ortholog); hyaluronan metabolic process (ortholog); negative regulation of BMP signaling pathway (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); allergic contact dermatitis (ortholog); Arsenic Poisoning (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog) NW_004955440 16915952 16944375 + 102005185 AGCD01036545;AGCD01036546;AGCD01036547;AGCD01036548;AGCD01036549;AGCD01036550;GBBH01138981;GBDI01105873;XM_013517506 XP_013372960 MODEL 8906722 ncrna LOC102024643 uncharacterized LOC102024643 NW_004955405 30035636 30036902 - 102024643 AGCD01005263;XR_259411 MODEL 8920595 pseudo LOC102020449 methylosome subunit pICln pseudogene NW_004955485 2203892 2204592 - 102020449 AGCD01058508 MODEL 8815960 ncrna LOC102018314 uncharacterized LOC102018314 NW_004955515 3174164 3177414 - 102018314 AGCD01067274;GBCQ01086323;XR_264521 MODEL 8784604 pseudo LOC102021324 60S ribosomal protein L23a pseudogene NW_004955411 28661333 28675617 + 102021324 AGCD01012223;AGCD01012224;AGCD01012225 MODEL 8930918 ncrna LOC102027086 uncharacterized LOC102027086 NW_004955425 17089911 17100979 + 102027086 AGCD01025630;GBDF01208572;XR_001234267;XR_261154 MODEL 8907163 protein-coding LOC102017069 signal recognition particle 19 kDa protein-like NW_004955442 19079500 19080423 - 102017069 AGCD01038037;XM_013517902 XP_013373356 MODEL 8958196 protein-coding Znf428 zinc finger protein 428 ASSOCIATED WITH ethylmalonic encephalopathy (ortholog); schizophrenia (ortholog); FOUND IN mitochondrion (ortholog) NW_004955555 1344681 1349200 - 102019335 AGCD01073074;GBCE01187587;XM_013508781 XP_013364235 MODEL 8885660 protein-coding Vps13b vacuolar protein sorting 13 homolog B ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN acrosome assembly (ortholog); adipose tissue development (ortholog); brain development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cataract (ortholog); Cohen syndrome (ortholog); FOUND IN acrosomal membrane (ortholog); cis-Golgi network membrane (ortholog); endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog) NW_004955417 14570399 15228106 + 102013082 AGCD01018211;AGCD01018212;AGCD01018213;AGCD01018214;AGCD01018215;AGCD01018216;AGCD01018217;AGCD01018218;AGCD01018219;AGCD01018220;AGCD01018221;AGCD01018222;AGCD01018223;AGCD01018224;GBDK01104496;XM_005381855;XM_005381856;XM_005381857;XM_005381858;XM_013512757 XP_005381912;XP_005381913;XP_005381914;XP_005381915;XP_013368211 MODEL 8718303 protein-coding Lratd2 LRAT domain containing 2 ASSOCIATED WITH trichorhinophalangeal syndrome type I (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog) NW_004955461 1623114 1627515 - 102003740 AGCD01048818;GBBH01142184;XM_013521345 XP_013376799 MODEL 8701483 protein-coding Neo1 neogenin 1 ENCODES a protein that exhibits BMP receptor binding (ortholog); cadherin binding (ortholog); co-receptor binding (ortholog); INVOLVED IN intracellular iron ion homeostasis (ortholog); multicellular organismal-level iron ion homeostasis (ortholog); myoblast fusion (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); Brugada syndrome 8 (ortholog); FOUND IN cell surface (ortholog); glutamatergic synapse (ortholog); Golgi apparatus (ortholog) NW_004955450 4191168 4324997 - 102029578 AGCD01042457;AGCD01042458;AGCD01042459;AGCD01042460;GBDF01119486;XM_013518999;XM_013519000;XM_013519001;XM_013519002;XM_013519003 XP_013374453;XP_013374454;XP_013374455;XP_013374456;XP_013374457 MODEL 9003340 protein-coding LOC102021325 serpin B9-like NW_004955465 10360723 10368587 - 102021325 AGCD01050507;XM_005398914 XP_005398971 MODEL 8868948 protein-coding Gpr4 G protein-coupled receptor 4 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); angiogenesis involved in wound healing (ortholog); cellular response to acidic pH (ortholog); FOUND IN plasma membrane (ortholog) NW_004955574 85619 87928 - 102014400 AGCD01075084;GBDK01306170;XM_005413788 XP_005413845 MODEL 9002011 protein-coding LOC102022970 olfactory receptor 4S2-like NW_004955550 594005 621630 - 102022970 AGCD01072511;AGCD01072512;AGCD01072513;XM_005412135 XP_005412192 MODEL 39131932 snrna U1 U1 spliceosomal RNA 9037887 protein-coding LOC102024027 granulocyte-macrophage colony-stimulating factor receptor subunit alpha-like NW_004955499 966081 982611 + 102024027 AGCD01063302;AGCD01063303;GBBH01118355;GBBH01118356;XM_013505607 XP_013361061 MODEL 8938303 pseudo LOC102017941 L-lactate dehydrogenase A chain pseudogene NW_004955403 58774316 58775377 - 102017941 AGCD01003191;XR_259281 MODEL 39131933 snrna U1 U1 spliceosomal RNA 39132922 snrna U6 U6 spliceosomal RNA 8841654 protein-coding LOC102022610 olfactory receptor 10AC1-like NW_004955491 70906 72516 - 102022610 AGCD01060319;GBDF01160348;XM_005404876 XP_005404933 MODEL 8947428 protein-coding LOC102007648 olfactory receptor 52B6 NW_004955414 21480839 21485708 + 102007648 AGCD01015421;XM_005380092 XP_005380149 MODEL 8810527 pseudo LOC102012305 60S ribosomal protein L26-like 1 pseudogene NW_004955468 11168153 11174462 - 102012305 AGCD01052119 MODEL 8841785 pseudo LOC102024645 E3 ubiquitin-protein ligase RING2 pseudogene NW_004955455 3212258 3213263 - 102024645 AGCD01045617 MODEL 8794520 protein-coding LOC102003335 olfactory receptor 2S2-like NW_004955472 333588 338863 + 102003335 AGCD01053329;GBDK01098752;XM_005400985;XM_013522931 XP_005401042;XP_013378385 MODEL 39131934 snrna U1 U1 spliceosomal RNA 8848208 protein-coding Sdhaf2 succinate dehydrogenase complex assembly factor 2 INVOLVED IN canonical Wnt signaling pathway (ortholog); epithelial to mesenchymal transition (ortholog); mitochondrial electron transport, succinate to ubiquinone (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); Hereditary Paraganglioma-Pheochromocytoma Syndromes (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nucleolus (ortholog) NW_004955511 6125966 6139098 - 102012990 AGCD01066597;GBDK01084204;XM_005408148 XP_005408205 MODEL 8921737 protein-coding Sap18 Sin3A associated protein 18 INVOLVED IN negative regulation of mRNA splicing, via spliceosome (ortholog); positive regulation of apoptotic process (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN Hedgehog signaling pathway; FOUND IN ASAP complex (ortholog); cytosol (ortholog); exon-exon junction complex (ortholog) NW_004955497 1862026 1869974 + 102010920 AGCD01062478;AGCD01062479;GBBH01031880;GBDF01000571;XM_013505506 XP_013360960 MODEL 8905424 pseudo LOC102027089 39S ribosomal protein L1, mitochondrial pseudogene NW_004955504 6974131 6975006 + 102027089 AGCD01064933 MODEL 9010871 pseudo LOC102007650 zinc finger and BTB domain-containing protein 14-like NW_004955470 12771610 12776657 - 102007650 AGCD01052939;AGCD01052940 MODEL 39131935 snrna U1 U1 spliceosomal RNA 8785784 protein-coding Znf436 zinc finger protein 436 ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955452 3364768 3374887 - 102014855 AGCD01043921;GBDK01263794;XM_005394760;XM_013519520;XM_013519521;XM_013519523 XP_005394817;XP_013374974;XP_013374975;XP_013374977 MODEL 8840224 protein-coding Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 ENCODES a protein that exhibits protein-lysine-acetyltransferase activity (ortholog); INVOLVED IN aerobic respiration (ortholog); anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); FOUND IN BLOC-1 complex (ortholog); BORC complex (ortholog); cytosol (ortholog) NW_004955458 3352442 3356224 + 102020885 AGCD01047296;GBDF01048251;XM_005397258 XP_005397315 MODEL 8746919 protein-coding Tagln2 transgelin 2 INVOLVED IN epithelial cell differentiation (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955468 11713809 11721125 - 102009367 AGCD01052137;AY533232;GBBH01003714;XM_005400179;XM_005400180 XP_005400236;XP_005400237 MODEL 8878293 ncrna LOC102022971 uncharacterized LOC102022971 NW_004955442 13794445 13816448 - 102022971 AGCD01037788;AGCD01037789;AGCD01037790;AGCD01037791;AGCD01037792;GBDF01042887;XR_262138 MODEL 8998336 protein-coding Gpr45 G protein-coupled receptor 45 NW_004955470 10166164 10169031 + 102026099 AGCD01052857;GBCQ01030771;XM_005400779 XP_005400836 MODEL 8821015 protein-coding LOC102007653 protocadherin gamma-A2 NW_004955415 12431046 12434469 - 102007653 AGCD01016196;GBDI01053094;XM_013512164 XP_013367618 MODEL 10202559 ncrna LOC106146917 uncharacterized LOC106146917 NW_004955504 4410119 4427950 - 106146917 AGCD01064883;XR_001231546;XR_001231547 MODEL 39131937 snrna U1 U1 spliceosomal RNA 8907453 pseudo LOC102028756 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L pseudogene NW_004955419 14722456 14726638 - 102028756 AGCD01020042 MODEL 8813987 ncrna LOC102026020 uncharacterized LOC102026020 NW_004955423 17249611 17260259 - 102026020 AGCD01023851;AGCD01023852;GBDF01050009;XR_260981 MODEL 8726374 protein-coding LOC102022613 uncharacterized LOC102022613 NW_004955494 2980579 2986183 - 102022613 AGCD01061458;GBDF01238692;XM_005405425 XP_005405482 MODEL 10264734 protein-coding LOC106146918 taste receptor type 2 member 1-like NW_004955504 6898677 6899568 - 106146918 AGCD01064930;XM_013505869 XP_013361323 MODEL 8923489 protein-coding LOC102017081 late cornified envelope protein 1F-like NW_004955592 899159 900388 - 102017081 AGCD01076334;GBCC01000794;XM_005414630 XP_005414687 MODEL 8722126 pseudo LOC102024652 putative hydrolase RBBP9 pseudogene NW_004955408 24651679 24656006 + 102024652 AGCD01008621 MODEL 8837679 protein-coding LOC102022973 putative P2Y purinoceptor 10 NW_004955557 1881513 1893116 + 102022973 AGCD01073314;GBDI01357447;XM_005412636;XM_005412637;XM_013508833 XP_005412693;XP_005412694;XP_013364287 MODEL 9010161 protein-coding Sh3pxd2a SH3 and PX domains 2A ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); osteoclast fusion (ortholog); reactive oxygen species metabolic process (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); desmoplastic/nodular medulloblastoma (ortholog); Stroke (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); podosome (ortholog) NW_004955485 6811857 7008011 + 102030427 AGCD01058629;AGCD01058630;GBDF01004113;GBDI01009548;XM_005403799 XP_005403856 MODEL 9008756 ncrna LOC102009976 uncharacterized LOC102009976 NW_004955515 4423696 4427822 - 102009976 AGCD01067320;GBDF01279453;XR_001231800;XR_001231801;XR_001231802;XR_001231803 MODEL 8845281 ncrna LOC102022616 uncharacterized LOC102022616 NW_004955423 16800375 16816919 + 102022616 AGCD01023839;GBDF01251583;XR_260974 MODEL 9064300 ncrna LOC102007320 uncharacterized LOC102007320 NW_004955413 65629 71480 + 102007320 AGCD01013436;XR_260039 MODEL 10267427 pseudo LOC106146919 taste receptor type 2 member 1-like NW_004955504 6937874 6944909 - 106146919 AGCD01064931;AGCD01064932 MODEL 9015895 pseudo LOC102024028 serine-rich coiled-coil domain-containing protein 2 pseudogene NW_004955425 25294131 25298646 + 102024028 AGCD01025912;XR_261170 MODEL 41410899 mirna MIR653 microRNA 653 8787664 ncrna LOC102006194 uncharacterized LOC102006194 NW_004956032 1817 5572 + 102006194 AGCD01078914;GBBH01223549;XR_265202 MODEL 8972605 ncrna LOC102017945 uncharacterized LOC102017945 NW_004955405 7621676 7626930 + 102017945 AGCD01004721;GBDF01304497;XR_001236107;XR_259363 MODEL 8872280 pseudo LOC102018315 L-lactate dehydrogenase A chain pseudogene NW_004955432 2293262 2295667 - 102018315 AGCD01030614 MODEL 8793469 protein-coding Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 ENCODES a protein that exhibits gamma-tubulin binding (ortholog); transcription factor binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); extrinsic apoptotic signaling pathway via death domain receptors (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Sciatica (ortholog); FOUND IN BLOC-1 complex (ortholog); BORC complex (ortholog); centrosome (ortholog) NW_004955507 6138511 6144823 - 102021692 AGCD01065697;GBDI01131466;XM_005407689;XM_005407690;XR_264384 XP_005407746;XP_005407747 MODEL 8795140 protein-coding Usp14 ubiquitin specific peptidase 14 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); deubiquitinase activity (ortholog); endopeptidase inhibitor activity (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); negative regulation of ERAD pathway (ortholog); negative regulation of ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); distal arthrogryposis (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955402 9710080 9737601 - 102025858 AGCD01000228;AGCD01000229;GBCB01025365;XM_005372682 XP_005372739 MODEL 8935649 protein-coding LOC102006195 geranylgeranyl transferase type-2 subunit alpha-like NW_004957120 9 1764 + 102006195 AGCD01080516;GBBH01089051;GBCE01054026;XM_005415225 XP_005415282 MODEL 8792014 protein-coding LOC102015319 thioredoxin NW_004955419 16868816 16880245 + 102015319 AGCD01020127;AGCD01020128;GBDI01015857;XM_005382739;XM_005382740 XP_005382796;XP_005382797 MODEL 8789422 pseudo LOC102017946 cytochrome c oxidase subunit 7B, mitochondrial pseudogene NW_004955452 16315978 16316312 + 102017946 AGCD01044505 MODEL 10108188 protein-coding LOC106149178 uncharacterized LOC106149178 NW_004955439 10307984 10316716 + 106149178 AGCD01035863;AGCD01035864;AGCD01035865;XM_013517298 XP_013372752 MODEL 8827231 pseudo LOC102012309 RAC-gamma serine/threonine-protein kinase-like NW_004955414 21907536 21908908 - 102012309 AGCD01015437 MODEL 8865858 protein-coding Id3 inhibitor of DNA binding 3, HLH protein ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); leptomycin B binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN cellular response to leptomycin B (ortholog); central nervous system development (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955452 3537352 3538921 - 102016972 AGCD01043929;GBDK01016702;XM_005394768 XP_005394825 MODEL 8905192 pseudo LOC102018316 60S ribosomal protein L9 pseudogene NW_004955518 3771000 3771572 - 102018316 AGCD01067809 MODEL 8957836 ncrna LOC102006201 uncharacterized LOC102006201 NW_004955452 2332910 2343134 + 102006201 AGCD01043890;GBDF01181028;XR_262638;XR_262639 MODEL 8961949 protein-coding Vps13c vacuolar protein sorting 13 homolog C INVOLVED IN mitochondrion organization (ortholog); negative regulation of type 2 mitophagy (ortholog); response to insulin (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytosol (ortholog); dense core granule membrane (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955450 13016933 13178797 + 102011606 AGCD01042726;AGCD01042727;AGCD01042728;AGCD01042729;GBBH01165410;GBDF01126104;XM_013518933 XP_013374387 MODEL 8962109 protein-coding LOC102017083 angiopoietin-4 NW_004955596 103626 145700 - 102017083 AGCD01076505;AGCD01076506;AGCD01076507;AGCD01076508;XM_013510010 XP_013365464 MODEL 8835734 protein-coding LOC102019545 death-inducer obliterator 1-like NW_004955445 36374 39104 - 102019545 AGCD01039300;GBCE01129387;XM_013518234 XP_013373688 MODEL 39132216 snrna U6 U6 spliceosomal RNA 8885868 ncrna LOC102018317 uncharacterized LOC102018317 NW_004955433 20167425 20217874 - 102018317 AGCD01031882;AGCD01031883;GBDF01278148;XR_001234715;XR_261601 MODEL 8910898 protein-coding Znf438 zinc finger protein 438 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH melanoma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955429 22567214 22762236 - 102025032 AGCD01029030;AGCD01029031;AGCD01029032;AGCD01029033;AGCD01029034;AGCD01029035;AGCD01029036;AGCD01029037;AGCD01029038;AGCD01029039;AGCD01029040;AGCD01029041;GBBH01198318;XM_005387202;XM_005387203;XM_005387204;XM_005387205;XM_005387206;XM_005387209;XM_013515466;XM_013515467;XM_013515468;XM_013515470;XM_013515471 XP_005387259;XP_005387260;XP_005387261;XP_005387262;XP_005387263;XP_005387266;XP_013370920;XP_013370921;XP_013370922;XP_013370924;XP_013370925 MODEL 41410902 mirna MIR654 microRNA 654 8816060 pseudo LOC102024030 E3 ubiquitin-protein ligase Praja-2 pseudogene NW_004955503 7343198 7345404 + 102024030 AGCD01064789 MODEL 9032219 pseudo LOC102007654 eukaryotic translation initiation factor 4 gamma 2 pseudogene NW_004955474 10505913 10506428 + 102007654 AGCD01054596;XM_005401468 MODEL 9053756 protein-coding Tagln3 transgelin 3 INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN nucleus (ortholog); synapse (ortholog) NW_004955427 12412959 12426400 + 102024031 AGCD01027213;AGCD01027214;GBCB01053023;XM_013515214 XP_013370668 MODEL 8765662 protein-coding Xpo6 exportin 6 ENCODES a protein that exhibits nuclear export signal receptor activity (ortholog); INVOLVED IN protein export from nucleus (ortholog); ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog); substance-related disorder (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955493 6172860 6265269 - 102009620 AGCD01061085;GBBH01033663;XM_005405146;XM_005405147;XM_005405149;XM_013504862;XM_013504863 XP_005405203;XP_005405204;XP_005405206;XP_013360316;XP_013360317 MODEL 39132218 snrna U6 U6 spliceosomal RNA 8766518 protein-coding LOC102019548 olfactory receptor 2G3-like NW_004955581 848998 850370 + 102019548 AGCD01075698;XM_005414255 XP_005414312 MODEL 8823997 protein-coding Spg7 SPG7 matrix AAA peptidase subunit, paraplegin INVOLVED IN anterograde axonal transport (ortholog); mitochondrial outer membrane permeabilization involved in programmed cell death (ortholog); mitochondrion organization (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 7 (ortholog); FOUND IN m-AAA complex (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955541 3092968 3141157 + 102009320 AGCD01071435;AGCD01071436;AGCD01071437;AGCD01071438;GBDF01194852;XM_005411035;XM_005411036 XP_005411092;XP_005411093 MODEL 8790398 protein-coding Usp15 ubiquitin specific peptidase 15 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); deubiquitinase activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); monoubiquitinated protein deubiquitination (ortholog); negative regulation of antifungal innate immune response (ortholog); PARTICIPATES IN mitochondrial autophagy pathway; ASSOCIATED WITH chronic myeloid leukemia (ortholog); diabetic neuropathy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955458 9440645 9533653 + 102006880 AGCD01047643;AGCD01047644;AGCD01047645;AGCD01047646;AGCD01047647;GBDF01044129;GBDJ01313332;XM_013520992 XP_013376446 MODEL 8900255 pseudo LOC102017947 sorting nexin-6 pseudogene NW_004955405 9414066 9415333 + 102017947 AGCD01004772 MODEL 8877138 pseudo LOC102009977 inosine-5'-monophosphate dehydrogenase 2 pseudogene NW_004955516 3145206 3147423 - 102009977 AGCD01067484 MODEL 8723782 protein-coding Klhl5 kelch like family member 5 ASSOCIATED WITH cocaine dependence (ortholog); Cocaine-Related Disorders (ortholog); Hyperglycinemia, Lactic Acidosis, and Seizures (ortholog); FOUND IN microtubule cytoskeleton (ortholog); plasma membrane (ortholog) NW_004955443 8173338 8220393 - 102029015 AGCD01038315;AGCD01038316;GBDK01185239;XM_005391987 XP_005392044 MODEL 8882573 protein-coding Tnfaip8 TNF alpha induced protein 8 ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity involved in apoptotic process (ortholog); molecular sequestering activity (ortholog); small molecule binding (ortholog); INVOLVED IN defense response to Gram-positive bacterium (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH esophagus squamous cell carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); familial adenomatous polyposis 1 (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955408 38872305 38986932 + 102003095 AGCD01009055;AGCD01009056;AGCD01009057;AGCD01009058;GBDK01285833;XM_005376545;XM_005376549;XM_013507017;XM_013507021;XM_013507024;XM_013507030 XP_005376602;XP_005376606;XP_013362471;XP_013362475;XP_013362478;XP_013362484 MODEL 10089835 protein-coding LOC106146920 putative uncharacterized protein ENSP00000383407 NW_004955407 16416116 16440422 - 106146920 AGCD01007215;AGCD01007216;AGCD01007217;GBDI01335608;XM_013505892 XP_013361346 MODEL 8914011 protein-coding LOC102007321 uncharacterized LOC102007321 NW_004955413 2702114 2703313 - 102007321 AGCD01013558;GBCB01123825;XM_005378745;XM_005378746 XP_005378802;XP_005378803 MODEL 9030311 protein-coding Slc13a2 solute carrier family 13 member 2 ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); fumarate transmembrane transporter activity (ortholog); sodium:dicarboxylate symporter activity (ortholog); INVOLVED IN alpha-ketoglutarate transport (ortholog); cellular response to lithium ion (ortholog); fumarate transport (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955481 4650356 4674441 - 102003966 AGCD01056948;AGCD01056949;GBCQ01062860;XM_005402752 XP_005402809 MODEL 8710025 ncrna LOC102017953 uncharacterized LOC102017953 NW_004955455 12326192 12375978 + 102017953 AGCD01046033;AGCD01046034;AGCD01046035;AGCD01046036;GBCB01036113;XR_262857 MODEL 8928930 protein-coding Vps13d vacuolar protein sorting 13 homolog D INVOLVED IN mitochondrion organization (ortholog); positive regulation of mitophagy (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); autosomal recessive cerebellar ataxia (ortholog); autosomal recessive spinocerebellar ataxia 4 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955486 1515630 1772107 - 102024802 AGCD01058958;AGCD01058959;AGCD01058960;AGCD01058961;GBBH01166307;XM_005403950;XM_005403951;XM_005403954;XM_005403955;XM_013504224;XM_013504225 XP_005404007;XP_005404008;XP_005404011;XP_005404012;XP_013359678;XP_013359679 MODEL 39131938 snrna U1 U1 spliceosomal RNA 10246376 ncrna LOC106146921 uncharacterized LOC106146921 NW_004955504 695738 702819 + 106146921 AGCD01064826;GBDF01170960;XR_001231551 MODEL 8724356 protein-coding LOC102026023 female-specific lacrimal gland protein-like NW_004955499 3047393 3051411 + 102026023 AGCD01063451;XM_005406560 XP_005406617 MODEL 8979412 pseudo LOC102017959 olfactory receptor 6C3-like NW_004955458 2571769 2572702 + 102017959 AGCD01047237 MODEL 39131939 snrna U1 U1 spliceosomal RNA 8938702 protein-coding Tnfaip8l1 TNF alpha induced protein 8 like 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of TOR signaling (ortholog); FOUND IN cytoplasm (ortholog) NW_004955495 4334443 4344283 - 102006588 AGCD01061914;GBDK01194751;XM_005405789 XP_005405846 MODEL 8761916 protein-coding Nepro nucleolus and neural progenitor protein INVOLVED IN negative regulation of neuron differentiation (ortholog); positive regulation of Notch signaling pathway (ortholog); ASSOCIATED WITH anauxetic dysplasia 3 (ortholog); microcephaly (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955427 13232375 13247164 - 102029987 AGCD01027241;AGCD01027242;GBDI01385924;XM_005386394;XM_013515165 XP_005386451;XP_013370619 MODEL 9044312 protein-coding LOC102008819 glutathione S-transferase theta-4-like NW_004955455 8339972 8366449 - 102008819 AGCD01045887;AGCD01045888;GBBH01060604;XM_005396410;XM_005396411;XM_005396412;XM_013520443 XP_005396467;XP_005396468;XP_005396469;XP_013375897 MODEL 39132222 snrna U6 U6 spliceosomal RNA 9038609 ncrna LOC102022975 uncharacterized LOC102022975 NW_004955560 1124178 1126313 + 102022975 AGCD01073747;GBDK01311183;XR_265005 MODEL 8860777 protein-coding Ppp1r42 protein phosphatase 1 regulatory subunit 42 ENCODES a protein that exhibits actin binding (ortholog); dynein complex binding (ortholog); tubulin binding (ortholog); INVOLVED IN regulation of phosphatase activity (ortholog); ASSOCIATED WITH Joubert syndrome 21 (ortholog); FOUND IN centrosome (ortholog); manchette (ortholog); microtubule cytoskeleton (ortholog) NW_004955444 12255381 12294605 + 102012136 AGCD01039067;GBDF01008759;XM_005392137;XM_005392138;XM_013518133 XP_005392194;XP_005392195;XP_013373587 MODEL 10386019 ncrna LOC106150028 uncharacterized LOC106150028 NW_004955461 8271377 8274545 - 106150028 AGCD01048927;XR_001236557 MODEL 39131940 snrna U1 U1 spliceosomal RNA 39132224 snrna U6 U6 spliceosomal RNA 8840430 protein-coding Sphk1 sphingosine kinase 1 ENCODES a protein that exhibits acetyltransferase activity (ortholog); ATP binding (ortholog); calmodulin binding (ortholog); INVOLVED IN blood vessel development (ortholog); brain development (ortholog); calcium-mediated signaling (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Fibrosis (ortholog); high grade glioma (ortholog); FOUND IN axon (ortholog); cilium (ortholog); clathrin-coated pit (ortholog) NW_004955506 5902079 5906639 - 102025488 AGCD01065391;GBCE01068400;XM_013506023 XP_013361477 MODEL 8708132 protein-coding Tnfaip8l2 TNF alpha induced protein 8 like 2 INVOLVED IN negative regulation of inflammatory response (ortholog); negative regulation of T cell activation (ortholog); T cell activation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Dravet syndrome (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (ortholog) NW_004955588 514567 517314 + 102026059 AGCD01076115;GBDF01159306;XM_005414498 XP_005414555 MODEL 8901067 pseudo LOC102023708 mortality factor 4-like protein 1 pseudogene NW_004955490 854719 868755 - 102023708 AGCD01060093;AGCD01060094;AGCD01060095 MODEL 39131941 snrna U1 U1 spliceosomal RNA 8922621 protein-coding LOC102018319 zinc finger protein 709-like NW_004955524 62567 82782 + 102018319 AGCD01068663;GBCE01006763;XM_005409477;XM_013507335;XM_013507336;XM_013507337 XP_005409534;XP_013362789;XP_013362790;XP_013362791 MODEL 39132228 snrna U6 U6 spliceosomal RNA 8917437 protein-coding Ppp1r7 protein phosphatase 1 regulatory subunit 7 ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); INVOLVED IN chromosome segregation (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN chromosome (ortholog) NW_004955542 520605 539699 - 102011697 AGCD01071474;GBDK01076342;XM_005411141;XM_013508062;XM_013508063;XM_013508064 XP_005411198;XP_013363516;XP_013363517;XP_013363518 MODEL 8787692 pseudo LOC102007660 calcyclin-binding protein-like NW_004955418 14381275 14381936 + 102007660 AGCD01019075 MODEL 39131942 snrna U1 U1 spliceosomal RNA 8892796 protein-coding Tnfaip8l3 TNF alpha induced protein 8 like 3 ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); phosphatidylinositol transfer activity (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate metabolic process (ortholog); phospholipid transport (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); paraplegia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955409 3427332 3451809 + 102025659 AGCD01009241;GBDK01355472;XM_005376653;XM_005376654;XM_005376655;XM_013510325;XR_001232642;XR_001232643;XR_001232644 XP_005376710;XP_005376711;XP_005376712;XP_013365779 MODEL 8701808 protein-coding Vps16 VPS16 core subunit of CORVET and HOPS complexes ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); endosome to lysosome transport (ortholog); symbiont entry into host cell (ortholog); ASSOCIATED WITH autistic disorder (ortholog); dystonia 30 (ortholog); genetic disease (ortholog); FOUND IN actin filament (ortholog); AP-3 adaptor complex (ortholog); axon (ortholog) NW_004955415 13791611 13813500 + 102018920 AGCD01016269;GBDF01123714;XM_005380766 XP_005380823 MODEL 8801421 protein-coding LOC102021328 alpha-2-macroglobulin-like NW_004955413 5885352 5996030 - 102021328 AGCD01013695;AGCD01013696;AGCD01013697;GBDI01211358;XM_005378888;XM_013511450;XM_013511451;XM_013511453;XR_260065 XP_005378945;XP_013366904;XP_013366905;XP_013366907 MODEL 10192189 ncrna LOC106146922 uncharacterized LOC106146922 NW_004955504 6818768 6825244 + 106146922 AGCD01064930;GBDI01247136;XR_001231554 MODEL 8702252 ncrna LOC102006202 uncharacterized LOC102006202 NW_004955452 4902765 4908470 + 102006202 AGCD01044001;GBCC01009101;XR_262655 MODEL 9048342 protein-coding LOC102003076 EKC/KEOPS complex subunit LAGE3-like NW_004955585 16414 18078 + 102003076 AGCD01075989;AGCD01075990;GBDF01011008;XM_005414424;XM_005414425 XP_005414481;XP_005414482 MODEL 39131943 snrna U1 U1 spliceosomal RNA 9007012 pseudo LOC102009982 ADP-ribosylation factor-like protein 5A NW_004955435 20926678 20927274 - 102009982 AGCD01033467 MODEL 8833292 pseudo LOC102022977 zinc finger protein DZIP1 pseudogene NW_004955563 1496656 1499178 + 102022977 AGCD01074150;XM_005413154 MODEL 8838594 protein-coding LOC102021330 olfactory receptor 51A4-like NW_004955414 20549923 20550842 - 102021330 AGCD01015380;XM_013511771 XP_013367225 MODEL 8750984 pseudo LOC102007328 sal-like protein 4 NW_004955470 12748580 12750141 - 102007328 AGCD01052938 MODEL 39131944 snrna U1 U1 spliceosomal RNA 9012088 protein-coding Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 ENCODES a protein that exhibits protein transmembrane transporter activity (ortholog); INVOLVED IN anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); blood coagulation (ortholog); ASSOCIATED WITH BRAIN MALFORMATION RENAL SYNDROME (ortholog); genetic disease (ortholog); Hermansky-Pudlak syndrome (ortholog); FOUND IN BLOC-1 complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955555 2183752 2186154 + 102022235 AGCD01073131;AGCD01073132;GBBH01208027;GBDK01228953;XM_013508764 XP_013364218 MODEL 8797959 ncrna LOC102022984 uncharacterized LOC102022984 NW_004955583 903467 919107 - 102022984 AGCD01075873;AGCD01075874;GBBH01177276;XR_001232507;XR_001232508;XR_001232509;XR_001232510;XR_265102 MODEL 8916418 ncrna LOC102023711 uncharacterized LOC102023711 NW_004955422 16259987 16263982 - 102023711 AGCD01022894;GBDF01114598;XR_260889 MODEL 8715726 protein-coding Sdhaf3 succinate dehydrogenase complex assembly factor 3 ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955432 13512594 13586984 + 102021790 AGCD01031019;AGCD01031020;AGCD01031021;AGCD01031022;AGCD01031023;AGCD01031024;AGCD01031025;GBDF01176739;XM_005388076 XP_005388133 MODEL 8881462 protein-coding LOC102018320 zinc finger protein OZF-like NW_004955524 2146250 2150075 - 102018320 AGCD01068800;GBCE01006151;XM_005409651 XP_005409708 MODEL 9046153 protein-coding Id4 inhibitor of DNA binding 4, HLH protein ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); transcription regulator inhibitor activity (ortholog); INVOLVED IN astrocyte differentiation (ortholog); brain development (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); cholestasis (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955483 6598804 6601496 - 102017128 AGCD01057783;GBCE01000857;GBDI01072421;XM_005403387 XP_005403444 MODEL 8886836 protein-coding Sh3pxd2b SH3 and PX domains 2B ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN adipose tissue development (ortholog); bone development (ortholog); cranial skeletal system development (ortholog); ASSOCIATED WITH angle-closure glaucoma (ortholog); Animal Disease Models (ortholog); atrial heart septal defect 7 (ortholog); FOUND IN cytoplasm (ortholog); podosome (ortholog) NW_004955408 25103278 25169934 - 102025876 AGCD01008630;GBCE01104618;XM_013509338 XP_013364792 MODEL 39132230 snrna U6 U6 spliceosomal RNA 9002377 protein-coding Ppp1r8 protein phosphatase 1 regulatory subunit 8 ENCODES a protein that exhibits molecular function inhibitor activity (ortholog); protein phosphatase regulator activity (ortholog); RNA endonuclease activity (ortholog); INVOLVED IN cell population proliferation (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955452 7022114 7042770 + 102009908 AGCD01044131;GBBH01186991;XM_005394930;XM_005394931 XP_005394987;XP_005394988 MODEL 39131945 snrna U1 U1 spliceosomal RNA 9031435 protein-coding LOC102023713 beta-defensin 122-like NW_004955422 29503436 29506106 + 102023713 AGCD01023400;GBDF01043266;XM_005384920 XP_005384977 MODEL 10095887 protein-coding LOC102008821 uncharacterized LOC102008821 NW_004955455 6620069 6624760 + 102008821 AGCD01045802;XM_013520311 XP_013375765 MODEL 39131492 protein-coding TNFAIP8L3 TNF alpha induced protein 8 like 3 8952034 protein-coding Gpr50 G protein-coupled receptor 50 ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955498 6707630 6711854 + 102005276 AGCD01063132;AGCD01063133;XM_005406431 XP_005406488 MODEL 10184165 ncrna LOC106146923 uncharacterized LOC106146923 NW_004955505 4322526 4323509 + 106146923 AGCD01065102;GBDF01256858;XR_001231569 MODEL 10115520 ncrna LOC106150029 uncharacterized LOC106150029 NW_004955461 43852 50652 - 106150029 AGCD01048788;GBDF01054958;XR_001236560;XR_001236561 MODEL 9023469 pseudo LOC102008823 UDP-glucuronosyltransferase 1-8 pseudogene NW_004955407 23170169 23171410 + 102008823 AGCD01007415 MODEL 9017004 protein-coding Klhl6 kelch like family member 6 INVOLVED IN B cell receptor signaling pathway (ortholog); germinal center formation (ortholog); response to bacterium (ortholog); ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); congenital disorder of glycosylation Id (ortholog); Currarino syndrome (ortholog) NW_004955420 23813482 23877886 + 102003770 AGCD01021261;AGCD01021262;AGCD01021263;GBCE01184064;XM_005383364 XP_005383421 MODEL 151707873 mirna MIR665 microRNA 665 8951713 protein-coding Lrba LPS responsive beige-like anchor protein INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); mitophagy (ortholog); protein localization to phagophore assembly site (ortholog); ASSOCIATED WITH common variable immunodeficiency 8 (ortholog); coronin-1A deficiency (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955471 5052535 5649696 - 102021651 AGCD01053095;AGCD01053096;AGCD01053097;AGCD01053098;AGCD01053099;AGCD01053100;AGCD01053101;AGCD01053102;AGCD01053103;AGCD01053104;AGCD01053105;AGCD01053106;AGCD01053107;GBCQ01037607;GBCQ01037609;XM_013522882 XP_013378336 MODEL 10236580 protein-coding LOC106149179 endogenous retrovirus group K member 113 Pol protein-like NW_004955439 11409136 11413984 + 106149179 AGCD01035906;XM_013517301 XP_013372755 MODEL 8727016 pseudo LOC102024656 uracil-DNA glycosylase pseudogene NW_004955462 1209532 1210412 - 102024656 AGCD01049103 MODEL 8874968 protein-coding Sap25 Sin3A associated protein 25 INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleus (ortholog) NW_004955573 328212 329897 + 102021060 AGCD01074975;GBDI01003810;XM_005413719;XM_005413720;XM_005413721 XP_005413776;XP_005413777;XP_005413778 MODEL 8829046 pseudo LOC102019549 small ubiquitin-related modifier 2 pseudogene NW_004955402 7777066 7777353 - 102019549 AGCD01000185 MODEL 8755020 pseudo LOC102021335 interferon alpha-4-like NW_004955472 12915361 12916194 + 102021335 AGCD01053825 MODEL 8958804 protein-coding LOC102022617 olfactory receptor 7E24-like NW_004955495 644019 644993 - 102022617 AGCD01061645;XM_005406123 XP_005406180 MODEL 8759902 ncrna LOC102017963 uncharacterized LOC102017963 NW_004955463 4854737 4856857 - 102017963 AGCD01049619;GBCQ01156510;XR_263147 MODEL 10343542 protein-coding LOC106149180 uncharacterized LOC106149180 NW_004955439 14960777 14965964 + 106149180 AGCD01035995;XM_013517305 XP_013372759 MODEL 8871819 ncrna LOC102024660 uncharacterized LOC102024660 NW_004955465 5887798 5910079 - 102024660 AGCD01050433;AGCD01050434;AGCD01050435;GBCQ01057754;XR_001236758;XR_001236759;XR_001236760;XR_263238 MODEL 8889428 ncrna LOC102028757 uncharacterized LOC102028757 NW_004955485 6765784 6772888 - 102028757 AGCD01058627;GBDF01120117;XR_263912 MODEL 8888662 protein-coding Sdhaf4 succinate dehydrogenase complex assembly factor 4 ENCODES a protein that exhibits enzyme activator activity (ortholog); INVOLVED IN cellular respiration (ortholog); innate immune response (ortholog); mitochondrial respiratory chain complex II assembly (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN mitochondrion (ortholog) NW_004955488 5628297 5644384 + 102028304 AGCD01059625;GBDF01050832;XM_005404476 XP_005404533 MODEL 8987230 protein-coding Dgkh diacylglycerol kinase eta ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); identical protein binding (ortholog); kinase binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); lipid phosphorylation (ortholog); phosphatidic acid biosynthetic process (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); endosome (ortholog) NW_004955518 4104700 4263657 - 102022731 AGCD01067820;AGCD01067821;AGCD01067822;AGCD01067823;GBBH01109666;GBDK01075088;XM_005409113 XP_005409170 MODEL 8969040 pseudo LOC102025077 crooked neck-like protein 1 NW_004955405 23721294 23723863 - 102025077 AGCD01005135 MODEL 8920163 protein-coding Vps18 VPS18 core subunit of CORVET and HOPS complexes ENCODES a protein that exhibits actin binding (ortholog); syntaxin binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN endosome organization (ortholog); endosome to lysosome transport (ortholog); lysosome organization (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog); FOUND IN actin filament (ortholog); AP-3 adaptor complex (ortholog); CORVET complex (ortholog) NW_004955416 7772653 7780408 + 102029739 AGCD01017012;GBDK01139400;XM_005381269 XP_005381326 MODEL 10385493 pseudo LOC106149181 sorting nexin-2 pseudogene NW_004955439 2480672 2481701 - 106149181 AGCD01035651 MODEL 8895592 protein-coding Znf445 zinc finger protein 445 ENCODES a protein that exhibits chromatin binding (ortholog); double-stranded methylated DNA binding (ortholog); INVOLVED IN epigenetic programing of female pronucleus (ortholog); negative regulation of gene expression via chromosomal CpG island methylation (ortholog); FOUND IN nucleus (ortholog) NW_004955420 26972008 26995063 + 102011774 AGCD01021444;GBDJ01229843;XM_005383482 XP_005383539 MODEL 8881569 ncrna LOC102023714 uncharacterized LOC102023714 NW_004955423 16979739 16983285 - 102023714 AGCD01023843;GBDF01020274;XR_260976 MODEL 8929756 pseudo LOC102027091 cell growth-regulating nucleolar protein pseudogene NW_004955506 4924244 4925672 - 102027091 AGCD01065350 MODEL 8899852 protein-coding LOC102005899 uncharacterized LOC102005899 NW_004955408 4190159 4193209 - 102005899 AGCD01008091;GBDI01371406;XM_005376117 XP_005376174 MODEL 8929060 ncrna LOC102028758 uncharacterized LOC102028758 NW_004955485 9026853 9050259 + 102028758 AGCD01058742;AGCD01058743;GBDF01112613;XR_001231065 MODEL 9045988 protein-coding LOC102012311 olfactory receptor 480-like NW_004955414 23617985 23618923 - 102012311 AGCD01015506;XM_005380205 XP_005380262 MODEL 8980989 protein-coding Slc13a3 solute carrier family 13 member 3 ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); citrate transmembrane transporter activity (ortholog); dicarboxylic acid transmembrane transporter activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); citrate transport (ortholog); dicarboxylic acid transport (ortholog); ASSOCIATED WITH Acute Reversible Leukoencephalopathy with Increased Urinary Alpha-ketoglutarate (ortholog); adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); FOUND IN basolateral plasma membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955445 10755336 10829797 + 102017174 AGCD01039679;GBDF01074885;XM_005392372;XM_005392373;XM_013518382;XM_013518383;XM_013518384 XP_005392429;XP_005392430;XP_013373836;XP_013373837;XP_013373838 MODEL 9027735 pseudo LOC102008826 creatine kinase U-type, mitochondrial-like NW_004955409 22945071 22950655 + 102008826 AGCD01010048 MODEL 10151784 ncrna LOC106149182 uncharacterized LOC106149182 NW_004955439 10927757 10945277 + 106149182 AGCD01035890;XR_001235178 MODEL 8931718 ncrna LOC102023716 uncharacterized LOC102023716 NW_004955497 4852494 4864900 - 102023716 AGCD01062586;GBDF01089499;XR_001231424 MODEL 39132924 snrna U6 U6 spliceosomal RNA 9007734 ncrna LOC102007661 uncharacterized LOC102007661 NW_004955482 3985965 4000816 - 102007661 AGCD01057276;AGCD01057277;AGCD01057278;GBDF01089354;XR_001231002;XR_001231003;XR_263828 MODEL 8817338 ncrna LOC102012320 uncharacterized LOC102012320 NW_004955416 18878338 18879499 - 102012320 AGCD01017411;GBDF01086604;XR_260394 MODEL 8766291 protein-coding Lrch1 leucine rich repeats and calponin homology domain containing 1 INVOLVED IN cellular response to chemokine (ortholog); negative regulation of GTPase activity (ortholog); negative regulation of T cell migration (ortholog); ASSOCIATED WITH multiple sclerosis (ortholog); Stroke (ortholog); FOUND IN cytoplasm (ortholog) NW_004955431 404575 501268 + 102009747 AGCD01029867;AGCD01029868;GBDI01262523;XM_013515721 XP_013371175 MODEL 8908308 protein-coding Nes nestin ENCODES a protein that exhibits CCR5 chemokine receptor binding (ortholog); INVOLVED IN cell projection morphogenesis (ortholog); G2/M transition of mitotic cell cycle (ortholog); negative regulation of catalytic activity (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); brain infarction (ortholog); brain ischemia (ortholog); FOUND IN cytoplasm (ortholog); intermediate filament (ortholog); intermediate filament cytoskeleton (ortholog) NW_004955545 2748132 2756595 - 102006826 AGCD01071921;GBDK01240958;XM_005411693 XP_005411750 MODEL 8989929 ncrna LOC102008827 uncharacterized LOC102008827 NW_004955410 29223762 29228888 - 102008827 AGCD01011276;GBDK01225118;XR_259882 MODEL 10079584 ncrna LOC106149183 uncharacterized LOC106149183 NW_004955439 10970528 10976662 + 106149183 AGCD01035890;GBDJ01149787;XR_001235179 MODEL 39132234 snrna U6 U6 spliceosomal RNA 8820537 protein-coding LOC102017970 zinc finger protein 624 NW_004955467 1957286 2017814 - 102017970 AGCD01051298;AGCD01051299;GBDI01212656;XM_005399322 XP_005399379 MODEL 8872107 ncrna LOC102009985 uncharacterized LOC102009985 NW_004955532 2292201 2295717 + 102009985 AGCD01070223;GBDF01097912;XR_264728 MODEL 8800498 protein-coding LOC102008828 uncharacterized LOC102008828 NW_004955463 7162477 7169673 + 102008828 AGCD01049720;AGCD01049721;GBDF01056767;XM_013521489 XP_013376943 MODEL 8982581 ncrna LOC102020455 uncharacterized LOC102020455 NW_004955492 3830903 3845283 - 102020455 AGCD01060701;GBDF01127764;XR_001231248 MODEL 9027686 protein-coding Sphk2 sphingosine kinase 2 ENCODES a protein that exhibits D-erythro-sphingosine kinase activity (ortholog); histone binding (ortholog); sphingosine kinase activity (ortholog); INVOLVED IN blood vessel development (ortholog); brain development (ortholog); cell population proliferation (ortholog); PARTICIPATES IN ceramide signaling pathway; Fabry disease pathway; Gaucher's disease pathway; ASSOCIATED WITH Memory Disorders (ortholog); middle cerebral artery infarction (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955559 1921479 1929450 - 102007376 AGCD01073682;GBDI01222339;XM_005412942;XM_005412943;XM_005412944;XM_005412946;XM_013508996 XP_005412999;XP_005413000;XP_005413001;XP_005413003;XP_013364450 MODEL 10267443 ncrna LOC106149184 uncharacterized LOC106149184 NW_004955439 13557188 13574181 + 106149184 AGCD01035961;XR_001235180 MODEL 8712499 ncrna LOC102005902 uncharacterized LOC102005902 NW_004955409 9536684 9555161 + 102005902 AGCD01009443;AGCD01009444;GBDF01156061;XR_259761 MODEL 153211033 mirna MIR668 microRNA 668 9009426 protein-coding Ereg epiregulin ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); growth factor activity (ortholog); receptor ligand activity (ortholog); INVOLVED IN cell-cell signaling (ortholog); cytokine-mediated signaling pathway (ortholog); epidermal growth factor receptor signaling pathway (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH cholesteatoma (ortholog); erythropoietic protoporphyria (ortholog); Experimental Colitis (ortholog); FOUND IN extracellular space (ortholog) NW_004955474 612440 627606 + 102006571 AGCD01054224;GBCC01052167;XM_005401312 XP_005401369 MODEL 8757293 ncrna LOC102006203 uncharacterized LOC102006203 NW_004955404 45391064 45417702 - 102006203 AGCD01004443;GBDF01040437;XR_259340 MODEL 9054207 protein-coding Slc13a4 solute carrier family 13 member 4 ENCODES a protein that exhibits sodium:sulfate symporter activity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); liver cirrhosis (ortholog) NW_004955494 7013577 7057767 + 102009072 AGCD01061545;GBDJ01270862;XM_005405472;XM_013505027 XP_005405529;XP_013360481 MODEL 151707884 mirna MIR671 microRNA 671 39131946 snrna U1 U1 spliceosomal RNA 8759634 protein-coding Sphkap SPHK1 interactor, AKAP domain containing ENCODES a protein that exhibits protein kinase A binding (ortholog); ASSOCIATED WITH congestive heart failure (ortholog); FOUND IN mitochondrion (ortholog); Z disc (ortholog) NW_004955453 6530796 6701189 + 102005335 AGCD01044722;AGCD01044723;AGCD01044724;AGCD01044725;AGCD01044726;AGCD01044727;GBDK01147355;XM_005395434;XM_013519982;XM_013519983;XM_013519984;XM_013519985 XP_005395491;XP_013375436;XP_013375437;XP_013375438;XP_013375439 MODEL 8826199 ncrna LOC102024032 uncharacterized LOC102024032 NW_004955427 19936159 19952591 + 102024032 AGCD01027389;GBDF01126122;XR_001234392;XR_261282 MODEL 8786141 protein-coding Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN angiogenesis (ortholog); astrocyte fate commitment (ortholog); basophil differentiation (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); lymphoid leukemia (ortholog); T-cell acute lymphoblastic leukemia (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955464 11304611 11317420 + 102030163 AGCD01050143;AGCD01050144;GBBH01209848;XM_013521747;XM_013521748;XM_013521749 XP_013377201;XP_013377202;XP_013377203 MODEL 8809508 protein-coding Lrch2 leucine rich repeats and calponin homology domain containing 2 ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); cerebellar ataxia (ortholog) NW_004955490 569526 678626 + 102026435 AGCD01060071;AGCD01060072;AGCD01060073;AGCD01060074;AGCD01060075;AGCD01060076;AGCD01060077;AGCD01060078;AGCD01060079;AGCD01060080;AGCD01060081;GBDF01306181;GBDJ01221232;XM_013504515 XP_013359969 MODEL 8845926 protein-coding Net1 neuroepithelial cell transforming 1 INVOLVED IN cellular response to hydrogen peroxide (ortholog); cellular response to ionizing radiation (ortholog); myoblast migration (ortholog); ASSOCIATED WITH COVID-19 (ortholog); high grade glioma (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog) NW_004955421 22105292 22154368 + 102022393 AGCD01022127;GBDF01192140;XM_005383837;XM_005383838 XP_005383894;XP_005383895 MODEL 9049585 protein-coding Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 INVOLVED IN anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); melanosome organization (ortholog); ASSOCIATED WITH Hermansky-Pudlak syndrome (ortholog); FOUND IN BLOC-1 complex (ortholog); cytoplasm (ortholog) NW_004955514 3698644 3699227 - 102008971 AGCD01067105;GBCE01116712;GBDF01001526;XM_013506813 XP_013362267 MODEL 8913376 protein-coding Klhl7 kelch like family member 7 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); ASSOCIATED WITH Bohring Syndrome (ortholog); cold-induced sweating syndrome (ortholog); cold-induced sweating syndrome 1 (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955410 25406775 25477552 + 102012172 AGCD01011152;AGCD01011153;GBCE01137321;XM_005377390;XM_013510654 XP_005377447;XP_013366108 MODEL 9030704 ncrna LOC102022985 uncharacterized LOC102022985 NW_004955402 30355688 30371406 - 102022985 AGCD01000769;GBCQ01030393;XR_259071 MODEL 8754875 protein-coding Usp16 ubiquitin specific peptidase 16 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); histone binding (ortholog); INVOLVED IN DNA damage response (ortholog); monoubiquitinated protein deubiquitination (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955407 28375246 28413279 + 102012736 AGCD01007581;AGCD01007582;AGCD01007583;AGCD01007584;AGCD01007585;AGCD01007586;GBBH01214662;GBDF01153043;XM_013503999;XM_013504009 XP_013359453;XP_013359463 MODEL 8847560 protein-coding Tex47 testis expressed 47 ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955432 6143294 6144841 - 102019307 AGCD01030810;GBDF01195736;XM_005387981 XP_005388038 MODEL 9011031 protein-coding LOC102009987 trem-like transcript 4 protein NW_004955437 7799753 7806865 - 102009987 AGCD01034469;GBBH01047078;XM_005389681;XM_013517047;XM_013517048 XP_005389738;XP_013372501;XP_013372502 MODEL 8715785 protein-coding Sap30 Sin3A associated protein 30 ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); skeletal muscle cell differentiation (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN histone deacetylase complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955403 33633028 33639271 - 102026062 AGCD01002457;AGCD01002458;GBBH01076242;GBDF01154171;XM_013513303 XP_013368757 MODEL 10191533 ncrna LOC106149185 uncharacterized LOC106149185 NW_004955439 1065115 1147557 - 106149185 AGCD01035599;AGCD01035600;GBCQ01092012;XR_001235181 MODEL 8935168 protein-coding LOC102005904 uncharacterized LOC102005904 NW_004955409 26016614 26049251 + 102005904 AGCD01010148;AGCD01010149;AGCD01010150;GBDF01305671;XM_005376937 XP_005376994 MODEL 9048541 protein-coding Sh3rf1 SH3 domain containing ring finger 1 ENCODES a protein that exhibits MAP-kinase scaffold activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of extrinsic apoptotic signaling pathway (ortholog); neuron migration (ortholog); ASSOCIATED WITH retinal degeneration (ortholog); RETINAL DYSTROPHY WITH INNER RETINAL DYSFUNCTION AND GANGLION CELL ABNORMALITIES (ortholog); short-rib thoracic dysplasia 6 with or without polydactyly (ortholog); FOUND IN cytosol (ortholog); lamellipodium (ortholog) NW_004955403 36989509 37141188 + 102006972 AGCD01002558;AGCD01002559;AGCD01002560;AGCD01002561;AGCD01002562;GBDF01253018;GBDI01325736;XM_013513376 XP_013368830 MODEL 8881058 protein-coding LOC102003080 interleukin-1 receptor type 1-like NW_004955756 6773 24480 + 102003080 AGCD01078281;GBCB01092471;GBDK01182668;XM_005415091 XP_005415148 MODEL 10109514 ncrna LOC106149186 uncharacterized LOC106149186 NW_004955439 6387977 6392221 - 106149186 AGCD01035751;GBCE01122291;XR_001235182 MODEL 8940352 protein-coding Sap30bp SAP30 binding protein ASSOCIATED WITH schizophrenia (ortholog); FOUND IN intermediate filament cytoskeleton (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955506 6535566 6574690 - 102016620 AGCD01065430;AGCD01065431;AGCD01065432;GBDI01223301;XM_005407492;XM_005407493;XM_013505977 XP_005407549;XP_005407550;XP_013361431 MODEL 39132236 snrna U6 U6 spliceosomal RNA 39131947 snrna U1 U1 spliceosomal RNA 10281225 ncrna LOC106150030 uncharacterized LOC106150030 NW_004955461 14354856 14355769 + 106150030 AGCD01049055;GBDF01021681;XR_001236564 MODEL 9006740 protein-coding Xpo7 exportin 7 ENCODES a protein that exhibits nuclear export signal receptor activity (ortholog); INVOLVED IN protein export from nucleus (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN cytoplasm (ortholog); nuclear pore (ortholog); nucleus (ortholog) NW_004955403 45470932 45508691 + 102029143 AGCD01002816;GBBH01206500;XM_005373641;XM_005373642 XP_005373698;XP_005373699 MODEL 8888258 pseudo LOC102017979 NAD-dependent malic enzyme, mitochondrial pseudogene NW_004955475 5686616 5688181 + 102017979 AGCD01054925 MODEL 8980354 protein-coding Vps25 vacuolar protein sorting 25 homolog ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN negative regulation of epidermal growth factor-activated receptor activity (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endosome membrane (ortholog) NW_004955451 16589509 16593730 + 102023318 AGCD01043695;GBCB01022377;XM_005394476 XP_005394533 MODEL 39131989 snrna U1 U1 spliceosomal RNA 8707404 ncrna LOC102019550 uncharacterized LOC102019550 NW_004955402 26587384 26638965 + 102019550 AGCD01000682;GBDF01306098;XR_001236745;XR_259068 MODEL 8905333 ncrna LOC102021336 uncharacterized LOC102021336 NW_004955415 19026977 19033625 - 102021336 AGCD01016460;GBDF01278713;XR_260302 MODEL 9050678 ncrna LOC102022619 uncharacterized LOC102022619 NW_004955424 13326259 13331941 - 102022619 AGCD01024630;GBDK01228314;XR_261059;XR_261060 MODEL 39132925 snrna U6 U6 spliceosomal RNA 8901969 protein-coding Lamc3 laminin subunit gamma 3 INVOLVED IN astrocyte development (ortholog); cell morphogenesis (ortholog); retina development in camera-type eye (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); brain disease (ortholog); FOUND IN basement membrane (ortholog) NW_004955513 872301 934234 + 102021586 AGCD01066834;AGCD01066835;AGCD01066836;AGCD01066837;GBCE01021711;XM_005408636 XP_005408693 MODEL 39132956 snrna U1 U1 spliceosomal RNA 8896359 protein-coding Usp18 ubiquitin specific peptidase 18 ENCODES a protein that exhibits ISG15-specific peptidase activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); negative regulation of type I interferon-mediated signaling pathway (ortholog); regulation of inflammatory response (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); Aicardi-Goutieres syndrome (ortholog); Chronic Hepatitis C (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); nucleus (ortholog) NW_004955454 6171575 6200879 + 102007190 AGCD01045222;AGCD01045223;AGCD01045224;AGCD01045225;GBCQ01154519;XM_005395987;XM_013520264;XM_013520266 XP_005396044;XP_013375718;XP_013375720 MODEL 10363235 ncrna LOC106146924 uncharacterized LOC106146924 NW_004955505 2458155 2461253 - 106146924 AGCD01064996;GBDF01224410;XR_001231570 MODEL 8902037 pseudo LOC102025081 60S ribosomal protein L35a pseudogene NW_004955406 33816177 33816497 + 102025081 AGCD01006488 MODEL 8841157 protein-coding Sdhb succinate dehydrogenase complex iron sulfur subunit B ENCODES a protein that exhibits 2 iron, 2 sulfur cluster binding (ortholog); 3 iron, 4 sulfur cluster binding (ortholog); 4 iron, 4 sulfur cluster binding (ortholog); INVOLVED IN respiratory electron transport chain (ortholog); succinate metabolic process (ortholog); PARTICIPATES IN altered citric acid cycle pathway; citric acid cycle pathway; electron transport chain pathway; ASSOCIATED WITH acute myocardial infarction (ortholog); Bannayan-Riley-Ruvalcaba syndrome (ortholog); bilateral breast cancer (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955527 1769280 1792496 + 102025285 AGCD01069414;AGCD01069415;GBCB01005239;XM_005409822 XP_005409879 MODEL 8887943 protein-coding Tnfrsf11a TNF receptor superfamily member 11a ENCODES a protein that exhibits cytokine binding (ortholog); transmembrane signaling receptor activity (ortholog); tumor necrosis factor receptor activity (ortholog); INVOLVED IN adaptive immune response (ortholog); cellular response to zinc ion starvation (ortholog); circadian temperature homeostasis (ortholog); ASSOCIATED WITH Alveolar Bone Loss (ortholog); autosomal recessive osteopetrosis 7 (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); FOUND IN cell surface (ortholog); cytosol (ortholog); external side of plasma membrane (ortholog) NW_004955402 46242329 46298157 + 102008484 AGCD01001155;GBDK01284418;XM_005373177 XP_005373234 MODEL 8704306 pseudo LOC102007330 ATP synthase F(0) complex subunit B1, mitochondrial pseudogene NW_004955414 4403610 4404427 - 102007330 AGCD01014865 MODEL 39132957 snrna U1 U1 spliceosomal RNA 8987272 protein-coding Spi1 Spi-1 proto-oncogene ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN anatomical structure regression (ortholog); apoptotic process involved in blood vessel morphogenesis (ortholog); cellular response to ethanol (ortholog); PARTICIPATES IN DNA modification pathway; interleukin-4 signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); agammaglobulinemia 10 (ortholog); alcohol use disorder (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955422 873735 886560 + 102022823 AGCD01022440;AGCD01022441;AGCD01022442;GBDK01006523;XM_005383976 XP_005384033 MODEL 39132240 snrna U6 U6 spliceosomal RNA 8886057 ncrna LOC102025086 uncharacterized LOC102025086 NW_004955455 14383123 14393046 - 102025086 AGCD01046089;AGCD01046090;GBBH01162429;XR_262859 MODEL 10162726 protein-coding LOC106150031 translation initiation factor IF-2-like NW_004955461 4786578 4786856 - 106150031 AGCD01048875;GBBH01162760;GBCE01152258;XM_013521327 XP_013376781 MODEL 8814696 protein-coding Tal2 TAL bHLH transcription factor 2 INVOLVED IN midbrain development (ortholog); multicellular organism growth (ortholog); post-embryonic development (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); adult T-cell leukemia/lymphoma (ortholog); Walker-Warburg syndrome (ortholog) NW_004955419 20899292 20907288 - 102027073 AGCD01020257;GBDI01174310;XM_005382772;XM_005382773;XM_005382774;XM_005382775;XM_013513293 XP_005382829;XP_005382830;XP_005382831;XP_005382832;XP_013368747 MODEL 39132958 snrna U1 U1 spliceosomal RNA 8993830 protein-coding Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 INVOLVED IN anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); developmental pigmentation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hermansky-Pudlak syndrome (ortholog); Hermansky-Pudlak Syndrome 11 (ortholog); FOUND IN BLOC-1 complex (ortholog); microvesicle (ortholog); transport vesicle (ortholog) NW_004955465 5910095 5943996 + 102025889 AGCD01050435;AGCD01050436;GBCQ01069346;XM_005398846;XM_005398848 XP_005398903;XP_005398905 MODEL 8756208 protein-coding Sdhc succinate dehydrogenase complex subunit C ENCODES a protein that exhibits heme binding (ortholog); protein-membrane adaptor activity (ortholog); PARTICIPATES IN citric acid cycle pathway; electron transport chain pathway; fumaric aciduria pathway; ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); breast cancer (ortholog); Carney Triad (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex II (succinate dehydrogenase) (ortholog) NW_004955468 13050359 13083932 + 102009930 AGCD01052197;AGCD01052198;GBCQ01010596;XM_005400278 XP_005400335 MODEL 39132242 snrna U6 U6 spliceosomal RNA 9003969 protein-coding LOC102012322 galectin-5-like NW_004955481 5560268 5566976 - 102012322 AGCD01056994;AGCD01056995;GBDK01183989;XM_005402780 XP_005402837 MODEL 8883826 protein-coding LOC102009989 putative uncharacterized protein encoded by LINC00521 NW_004955438 16063238 16071161 + 102009989 AGCD01035395;GBDF01002712;XM_005390358;XM_005390359;XM_005390360;XM_005390361;XM_005390362 XP_005390415;XP_005390416;XP_005390417;XP_005390418;XP_005390419 MODEL 10218799 ncrna LOC106150032 uncharacterized LOC106150032 NW_004955461 8986832 8989194 + 106150032 AGCD01048940;GBDF01075737;XR_001236570 MODEL 8982280 protein-coding LOC102006204 hematopoietic prostaglandin D synthase NW_004955405 565811 595570 + 102006204 AGCD01004574;AGCD01004575;AGCD01004576;AGCD01004577;AGCD01004578;AGCD01004579;GBBH01172499;GBCE01033157;XM_013517297 XP_013372751 MODEL 8781685 ncrna LOC102021338 uncharacterized LOC102021338 NW_004955478 2711040 2718852 + 102021338 AGCD01055802;GBDF01209257;XR_001230835;XR_263687 MODEL 39132961 snrna U1 U1 spliceosomal RNA 8840277 ncrna LOC102022620 uncharacterized LOC102022620 NW_004955425 15875825 15959149 - 102022620 AGCD01025593;AGCD01025594;GBDF01249927;XR_001234296 MODEL 8822261 protein-coding Sdhd succinate dehydrogenase complex subunit D ENCODES a protein that exhibits heme binding (ortholog); protein-membrane adaptor activity (ortholog); succinate dehydrogenase (quinone) activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); regulation of catecholamine secretion (ortholog); tricarboxylic acid cycle (ortholog); PARTICIPATES IN altered citric acid cycle pathway; citric acid cycle pathway; electron transport chain pathway; ASSOCIATED WITH ataxia telangiectasia (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); Carney-Stratakis syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex II (succinate dehydrogenase) (ortholog) NW_004955412 13768501 13778944 + 102027279 AGCD01012845;GBDF01125987;XM_005378109 XP_005378166 MODEL 9029802 protein-coding Slc13a5 solute carrier family 13 member 5 ENCODES a protein that exhibits citrate transmembrane transporter activity (ortholog); identical protein binding (ortholog); organic acid:sodium symporter activity (ortholog); INVOLVED IN alpha-ketoglutarate transport (ortholog); cellular response to lithium ion (ortholog); citrate transport (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN basolateral plasma membrane (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955467 12181555 12217280 - 102007978 AGCD01051625;GBDF01196108;XM_005399670;XM_013522142;XM_013522144 XP_005399727;XP_013377596;XP_013377598 MODEL 8747419 protein-coding LOC102003083 zinc finger and SCAN domain-containing protein 4-like NW_004956963 711 1829 + 102003083 AGCD01080359;XM_013510241 XP_013365695 MODEL 8862497 ncrna LOC102017087 uncharacterized LOC102017087 NW_004955451 7099861 7104559 - 102017087 AGCD01043226;GBDK01360916;XR_262588 MODEL 8949314 ncrna LOC102007332 uncharacterized LOC102007332 NW_004955474 9962827 10021859 - 102007332 AGCD01054580;AGCD01054581;AGCD01054582;AGCD01054583;AGCD01054584;GBDF01078385;XR_001230747 MODEL 8758056 protein-coding Tnfrsf11b TNF receptor superfamily member 11b ENCODES a protein that exhibits heparan sulfate binding (ortholog); INVOLVED IN extracellular matrix organization (ortholog); negative regulation of bone resorption (ortholog); negative regulation of odontogenesis of dentin-containing tooth (ortholog); ASSOCIATED WITH Alveolar Bone Loss (ortholog); aortic valve stenosis (ortholog); bipolar disorder (ortholog); FOUND IN extracellular matrix (ortholog); extracellular space (ortholog); receptor complex (ortholog) NW_004955417 24804708 24831338 - 102005255 AGCD01018467;GBDJ01116459;XM_005381906 XP_005381963 MODEL 8828676 pseudo LOC102003085 translationally-controlled tumor protein pseudogene NW_004955404 18220065 18220653 + 102003085 AGCD01003611 MODEL 8908461 pseudo LOC102017980 60S ribosomal protein L37 pseudogene NW_004955478 84577 84852 + 102017980 AGCD01055731 MODEL 8876460 protein-coding LOC102009212 uncharacterized LOC102009212 NW_004955436 1320800 1334990 - 102009212 AGCD01033575;GBDK01015463;XM_013516600;XR_001234945;XR_001234946;XR_001234947;XR_001234948;XR_001234949;XR_261735;XR_261738 XP_013372054 MODEL 8758482 protein-coding LOC102020457 aldose reductase-related protein 2-like NW_004955494 7937031 8115110 + 102020457 AGCD01061559;AGCD01061560;AGCD01061561;AGCD01061562;AGCD01061563;AGCD01061564;AGCD01061565;AGCD01061566;AGCD01061567;AGCD01061568;AGCD01061569;AGCD01061570;AGCD01061571;AGCD01061572;AGCD01061573;AGCD01061574;AGCD01061575;AGCD01061576;AGCD01061577;AGCD01061578;GBDF01076191;GBDK01322138;XM_013505015 XP_013360469 MODEL 8887285 protein-coding Xpot exportin for tRNA ENCODES a protein that exhibits tRNA binding (ortholog); INVOLVED IN tRNA export from nucleus (ortholog); ASSOCIATED WITH mucopolysaccharidosis type IIID (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear pore (ortholog) NW_004955458 11162612 11206515 + 102020214 AGCD01047726;AGCD01047727;AGCD01047728;AGCD01047729;AGCD01047730;GBCQ01038249;XM_005397439;XM_013520915;XM_013520916;XM_013520917;XM_013520918 XP_005397496;XP_013376369;XP_013376370;XP_013376371;XP_013376372 MODEL 10380323 protein-coding Tex48 testis expressed 48 NW_004955419 12969338 12982474 + 106148269 AGCD01019989;AGCD01019990;GBDF01003927;XM_013513086;XM_013513087;XM_013513088;XM_013513089;XM_013513090 XP_013368540;XP_013368541;XP_013368542;XP_013368543;XP_013368544 MODEL 8929860 protein-coding Ide insulin degrading enzyme ENCODES a protein that exhibits amyloid-beta binding (ortholog); ATP binding (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN amyloid-beta clearance (ortholog); amyloid-beta clearance by cellular catabolic process (ortholog); amyloid-beta metabolic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Cognitive Dysfunction (ortholog); diabetic encephalopathy (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955425 819461 926440 + 102006593 AGCD01025202;AGCD01025203;AGCD01025204;AGCD01025205;AGCD01025206;GBDI01296471;XM_005385825 XP_005385882 MODEL 8822193 protein-coding Vps26a VPS26, retromer complex component A INVOLVED IN endocytic recycling (ortholog); retrograde transport, endosome to Golgi (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH diabetic retinopathy (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); endosome (ortholog) NW_004955437 21911111 21944888 - 102025620 AGCD01034924;AGCD01034925;GBCB01006606;XM_005390094;XM_005390095;XM_013516941 XP_005390151;XP_005390152;XP_013372395 MODEL 8893433 protein-coding LOC102003087 eukaryotic translation initiation factor 1A, X-chromosomal-like NW_004955405 22619382 22620342 + 102003087 AGCD01005097;GBDF01111439;XM_005374400 XP_005374457 MODEL 39132765 snrna U6 U6 spliceosomal RNA 8823844 protein-coding Dgki diacylglycerol kinase iota ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); GTPase inhibitor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); excitatory postsynaptic potential (ortholog); habituation (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN axon terminus (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955494 5119419 5541058 + 102006587 AGCD01061518;AGCD01061519;AGCD01061520;AGCD01061521;AGCD01061522;GBDF01250767;XM_013505028 XP_013360482 MODEL 8743251 pseudo LOC102024033 60S ribosome subunit biogenesis protein NIP7 homolog pseudogene NW_004955428 4681870 4684650 - 102024033 AGCD01027700 MODEL 8844984 protein-coding LOC102012324 olfactory receptor 14I1-like NW_004955418 30244034 30244983 + 102012324 AGCD01019507;XM_013512881 XP_013368335 MODEL 8943387 protein-coding Znf446 zinc finger protein 446 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Dwarfism (ortholog); High Myopia (ortholog) NW_004955584 1102597 1107177 + 102018349 AGCD01075980;GBDK01405155;XM_005414392;XM_005414397;XM_013509877;XM_013509878;XM_013509879 XP_005414449;XP_005414454;XP_013365331;XP_013365332;XP_013365333 MODEL 8786960 protein-coding Tex50 testis expressed 50 ASSOCIATED WITH antithrombin III deficiency (ortholog) NW_004955406 13859967 13864308 + 102006539 AGCD01005954;GBDF01003776;XM_005374869;XM_005374870;XM_013520800 XP_005374926;XP_005374927;XP_013376254 MODEL 8951152 protein-coding Sap30l SAP30 like ENCODES a protein that exhibits DNA binding (ortholog); histone binding (ortholog); non-sequence-specific DNA binding, bending (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); polycystic ovary syndrome (ortholog); FOUND IN fibrillar center (ortholog); histone deacetylase complex (ortholog); nucleolus (ortholog) NW_004955408 8827744 8832588 + 102030604 AGCD01008226;GBBH01004512;GBDI01012838;XM_005376194 XP_005376251 MODEL 9032618 pseudo LOC102021342 60S ribosomal protein L7 pseudogene NW_004955416 31233424 31238297 + 102021342 AGCD01017729 MODEL 8729272 protein-coding LOC102022627 olfactory receptor 4A16-like NW_004955511 139532 140458 + 102022627 AGCD01066321;XM_005408178 XP_005408235 MODEL 39132963 snrna U1 U1 spliceosomal RNA 8994895 ncrna LOC102007675 uncharacterized LOC102007675 NW_004955425 7720216 7730019 + 102007675 AGCD01025391;AGCD01025392;GBDK01047433;XR_261136 MODEL 8950174 pseudo LOC102017088 guanine nucleotide-binding protein G(s) subunit alpha pseudogene NW_004956314 521 1942 - 102017088 AGCD01079417;XM_005415192 MODEL 8858849 pseudo LOC102021348 prefoldin subunit 1 pseudogene NW_004955482 4817894 4819362 - 102021348 AGCD01057311 MODEL 39133695 mirna MIR675 microRNA 675 8969128 protein-coding Sapcd1 suppressor APC domain containing 1 ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog) NW_004955437 297605 299242 + 102027898 AGCD01034117;GBDI01139374;XM_005389384;XM_013516811;XM_013516812 XP_005389441;XP_013372265;XP_013372266 MODEL 8950296 protein-coding LOC102022630 E3 ubiquitin-protein ligase MARCH3-like NW_004955521 4635334 4642559 - 102022630 AGCD01068273;GBCE01134139;XM_013507094 XP_013362548 MODEL 8980437 pseudo LOC102027095 solute carrier family 35 member E3 pseudogene NW_004955508 56361 88674 - 102027095 AGCD01065728;AGCD01065729 MODEL 8788617 protein-coding LOC102017983 histone H3 NW_004955483 832295 834112 - 102017983 AGCD01057632;XM_013503790 XP_013359244 MODEL 39132246 snrna U6 U6 spliceosomal RNA 8880453 protein-coding LOC102006209 uncharacterized LOC102006209 NW_004955406 38742352 38743020 + 102006209 AGCD01006609;XM_005375478 XP_005375535 MODEL 8733485 protein-coding Lamp1 lysosomal associated membrane protein 1 ENCODES a protein that exhibits enzyme binding (ortholog); ion channel inhibitor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN autophagic cell death (ortholog); establishment of protein localization to organelle (ortholog); Golgi to lysosome transport (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH factor X deficiency (ortholog); Streptococcus pneumonia (ortholog); FOUND IN alveolar lamellar body (ortholog); autolysosome (ortholog); autophagosome membrane (ortholog) NW_004955404 557090 573532 - 102005766 AGCD01003203;GBBH01004584;XM_005373950;XM_005373951 XP_005374007;XP_005374008 MODEL 8883217 protein-coding Sh3rf2 SH3 domain containing ring finger 2 ENCODES a protein that exhibits phosphatase binding (ortholog); protein phosphatase 1 binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of JNK cascade (ortholog); negative regulation of protein ubiquitination (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955415 8024984 8148970 - 102019057 AGCD01016063;AGCD01016064;AGCD01016065;GBCB01038742;XM_005380683;XM_005380684;XM_005380685 XP_005380740;XP_005380741;XP_005380742 MODEL 9004574 pseudo LOC102009990 retinol dehydrogenase 11 pseudogene NW_004955438 7901724 7902409 - 102009990 AGCD01035148 MODEL 9009879 protein-coding LOC102018323 melanoma-associated antigen B1-like NW_004955531 614018 615601 - 102018323 AGCD01070003;GBDF01126490;GBDF01126491;XM_005410132 XP_005410189 MODEL 8979720 protein-coding LOC102003337 olfactory receptor 51G2-like NW_004955414 20918933 20919880 - 102003337 AGCD01015395;XM_005380486 XP_005380543 MODEL 8856477 protein-coding LOC102023724 zinc finger protein 62-like NW_004955507 6177248 6179270 - 102023724 AGCD01065697;XM_013506147 XP_013361601 MODEL 8955153 protein-coding Neto1 neuropilin and tolloid like 1 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); INVOLVED IN anterograde axonal transport of neurotransmitter receptor complex (ortholog); memory (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN excitatory synapse (ortholog); glutamatergic synapse (ortholog); postsynaptic density (ortholog) NW_004955402 56262137 56376105 - 102008044 AGCD01001458;AGCD01001459;AGCD01001460;AGCD01001461;GBDF01158952;XM_005373063;XM_005373064;XM_005373065;XM_013511369;XM_013511373 XP_005373120;XP_005373121;XP_005373122;XP_013366823;XP_013366827 MODEL 8882764 pseudo LOC102006212 adenosine deaminase-like protein pseudogene NW_004955407 20334537 20335032 - 102006212 AGCD01007327 MODEL 8803822 protein-coding Slc14a1 solute carrier family 14 member 1 (Kidd blood group) ENCODES a protein that exhibits urea channel activity (ortholog); urea transmembrane transporter activity (ortholog); water transmembrane transporter activity (ortholog); INVOLVED IN establishment of localization in cell (ortholog); urea transmembrane transport (ortholog); urea transport (ortholog); ASSOCIATED WITH autoimmune hemolytic anemia (ortholog); chromosome 18q deletion syndrome (ortholog); hemolytic disease of the fetus (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955402 31320897 31343774 + 102024403 AGCD01000785;GBDI01163529;XM_005372859;XM_005372860 XP_005372916;XP_005372917 MODEL 8952810 protein-coding Ppp1r9a protein phosphatase 1 regulatory subunit 9A ENCODES a protein that exhibits actin filament binding (ortholog); GTPase binding (ortholog); identical protein binding (ortholog); INVOLVED IN actin filament organization (ortholog); calcium-mediated signaling (ortholog); cellular response to toxic substance (ortholog); ASSOCIATED WITH Experimental Seizures (ortholog); hepatocellular carcinoma (ortholog); Huntington's disease (ortholog); FOUND IN actin cytoskeleton (ortholog); cortical actin cytoskeleton (ortholog); cytoskeleton (ortholog) NW_004955432 11607269 11891568 + 102015138 AGCD01030954;AGCD01030955;AGCD01030956;AGCD01030957;GBCQ01126778;XM_005388052;XM_005388053;XM_005388054;XM_005388055;XM_005388056;XM_005388057;XM_005388058;XM_005388059;XM_013516008;XM_013516009 XP_005388109;XP_005388110;XP_005388111;XP_005388112;XP_005388113;XP_005388114;XP_005388115;XP_005388116;XP_013371462;XP_013371463 MODEL 8987948 protein-coding LOC102025087 zinc finger protein 709-like NW_004955407 43049470 43074123 - 102025087 AGCD01007903;AGCD01007904;GBDF01011131;XM_005375955;XM_013505817 XP_005376012;XP_013361271 MODEL 8974663 ncrna LOC102007340 uncharacterized LOC102007340 NW_004955482 6352713 6353828 - 102007340 AGCD01057386;GBDF01082671;XR_263836 MODEL 8805826 protein-coding Gpr52 G protein-coupled receptor 52 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN locomotory behavior (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955406 14415252 14420251 + 102014008 AGCD01005964;GBDF01025623;XM_005374893;XM_005374894;XM_005374895;XM_013520909 XP_005374950;XP_005374951;XP_005374952;XP_013376363 MODEL 8949270 protein-coding Znf449 zinc finger protein 449 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN spermatogonial cell division (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Dwarfism (ortholog) NW_004955602 363341 380916 - 102004768 AGCD01076779;AGCD01076780;AGCD01076781;GBDJ01041236;XM_005414832;XM_013510080 XP_005414889;XP_013365534 MODEL 8925844 protein-coding LOC102024662 olfactory receptor 958 NW_004955412 24894780 24897398 + 102024662 AGCD01013130;XM_005378641 XP_005378698 MODEL 8883242 pseudo LOC102020461 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like NW_004955424 22114938 22116340 + 102020461 AGCD01024933 MODEL 9035296 protein-coding Xpr1 xenotropic and polytropic retrovirus receptor 1 ENCODES a protein that exhibits efflux transmembrane transporter activity (ortholog); inositol hexakisphosphate binding (ortholog); phosphate transmembrane transporter activity (ortholog); INVOLVED IN intracellular phosphate ion homeostasis (ortholog); phosphate ion transmembrane transport (ortholog); response to virus (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); basal ganglia disease (ortholog); FOUND IN plasma membrane (ortholog) NW_004955406 19831398 19980994 + 102011949 AGCD01006093;AGCD01006094;AGCD01006095;GBDF01122624;XM_013503153 XP_013358607 MODEL 10365009 ncrna LOC106149187 uncharacterized LOC106149187 NW_004955439 17768240 17775292 - 106149187 AGCD01036044;XR_001235183 MODEL 8830555 protein-coding LOC102007346 uncharacterized LOC102007346 NW_004955491 8656799 8664951 + 102007346 AGCD01060620;GBDK01151127;XM_013504571 XP_013360025 MODEL 10112153 ncrna LOC106150033 uncharacterized LOC106150033 NW_004955461 9108773 9114933 + 106150033 AGCD01048940;AGCD01048941;GBDF01209602;XR_001236571;XR_001236572 MODEL 8814206 protein-coding Idh1 isocitrate dehydrogenase (NADP(+)) 1 ENCODES a protein that exhibits identical protein binding (ortholog); isocitrate dehydrogenase (NADP+) activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN 2-oxoglutarate metabolic process (ortholog); female gonad development (ortholog); glutathione metabolic process (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955457 6851542 6869452 + 102006982 AGCD01046855;AY463492;GBDJ01134359;XM_005396966 XP_005397023 MODEL 39131347 protein-coding ZNF45 zinc finger protein 45 8783093 protein-coding LOC102024663 T-cell surface glycoprotein CD1e, membrane-associated-like NW_004955468 10224376 10227747 + 102024663 AGCD01052074;GBDF01171361;XM_005400148;XM_013522340 XP_005400205;XP_013377794 MODEL 8709808 protein-coding Usp19 ubiquitin specific peptidase 19 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); Hsp90 protein binding (ortholog); K48-linked deubiquitinase activity (ortholog); INVOLVED IN ERAD pathway (ortholog); negative regulation of proteasomal protein catabolic process (ortholog); negative regulation of skeletal muscle tissue development (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); carnitine-acylcarnitine translocase deficiency (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955532 1104212 1115267 - 102009214 AGCD01070165;GBDJ01091689;XM_005410189;XM_005410190;XM_005410191;XM_013507630 XP_005410246;XP_005410247;XP_005410248;XP_013363084 MODEL 8794878 protein-coding LOC102017986 neutrophil gelatinase-associated lipocalin-like NW_004955419 46267 52358 - 102017986 AGCD01019560;AGCD01019561;GBDJ01026132;XM_005382913 XP_005382970 MODEL 8990815 ncrna LOC102009994 uncharacterized LOC102009994 NW_004955551 302834 319846 + 102009994 AGCD01072654;GBDF01089175;XR_264922 MODEL 8958557 ncrna LOC102013525 uncharacterized LOC102013525 NW_004955505 4680056 4680662 + 102013525 AGCD01065126;GBDF01224478;XR_264309 MODEL 8838681 protein-coding Erf ETS2 repressor factor ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN chorio-allantoic fusion (ortholog); ectodermal cell differentiation (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Arnold-Chiari Malformation (ortholog); atrial heart septal defect (ortholog); brain disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955555 654945 661097 + 102027684 AGCD01073042;GBBH01090836;GBCE01095401;XM_005412381;XM_005412382;XM_013508752 XP_005412438;XP_005412439;XP_013364206 MODEL 8844752 protein-coding Sh3rf3 SH3 domain containing ring finger 3 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN positive regulation of JNK cascade (ortholog); protein autoubiquitination (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog) NW_004955470 12446604 12615689 + 102006652 AGCD01052932;AGCD01052933;AGCD01052934;AGCD01052935;GBDF01142813;XM_005400847 XP_005400904 MODEL 8913213 protein-coding Lamp2 lysosomal associated membrane protein 2 ENCODES a protein that exhibits enzyme binding (ortholog); ion channel inhibitor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagy (ortholog); cellular response to starvation (ortholog); PARTICIPATES IN autophagy pathway; chaperone mediated autophagy pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN autolysosome (ortholog); autophagosome membrane (ortholog); chaperone-mediated autophagy translocation complex (ortholog) NW_004955572 1423048 1464443 + 102004760 AGCD01074953;GBDF01195104;XM_005413661;XM_005413662 XP_005413718;XP_005413719 MODEL 8825728 protein-coding Taldo1 transaldolase 1 ENCODES a protein that exhibits carbohydrate binding (ortholog); identical protein binding (ortholog); monosaccharide binding (ortholog); INVOLVED IN fructose 6-phosphate metabolic process (ortholog); glyceraldehyde-3-phosphate metabolic process (ortholog); pentose-phosphate shunt (ortholog); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - non-oxidative phase; ribose 5-phosphate isomerase deficiency pathway; ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); carbohydrate metabolic disorder (ortholog); cataract (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955476 11356601 11364573 - 102011536 AGCD01055453;AGCD01055454;GBDI01015937;XM_005401818;XM_013502979 XP_005401875;XP_013358433 MODEL 8750991 pseudo LOC102007677 40S ribosomal protein S3a pseudogene NW_004955426 13259846 13261749 + 102007677 AGCD01026360 MODEL 8856600 ncrna LOC102028763 uncharacterized LOC102028763 NW_004955422 5203360 5211297 - 102028763 AGCD01022566;GBDF01182757;XR_260854 MODEL 8874933 protein-coding Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 ENCODES a protein that exhibits actin filament binding (ortholog); identical protein binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); adenosine metabolic process (ortholog); amino acid metabolic process (ortholog); ASSOCIATED WITH AGAT deficiency (ortholog); Bloom syndrome (ortholog); Chediak-Higashi syndrome (ortholog); FOUND IN BLOC-1 complex (ortholog); cell-cell contact zone (ortholog); contractile ring (ortholog) NW_004955409 7902125 7913966 - 102019250 AGCD01009369;GBBH01116617;XM_005376726;XM_005376727 XP_005376783;XP_005376784 MODEL 8938520 protein-coding LOC102025089 olfactory receptor 9-like NW_004955458 3200530 3201468 - 102025089 AGCD01047278;XM_013520865 XP_013376319 MODEL 39133646 mirna MIR676 microRNA 676 8866009 protein-coding Slc14a2 solute carrier family 14 member 2 ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); urea transmembrane transporter activity (ortholog); INVOLVED IN urea transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); Microcephaly, Epilepsy, and Diabetes Syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955402 30877808 31283983 + 102023214 AGCD01000781;AGCD01000782;GBCQ01010210;XM_005372853;XM_005372854;XM_005372855;XM_005372856;XM_005372857;XM_013510367;XM_013510368;XM_013510374 XP_005372910;XP_005372911;XP_005372912;XP_005372913;XP_005372914;XP_013365821;XP_013365822;XP_013365828 MODEL 8978372 protein-coding Sh3tc1 SH3 domain and tetratricopeptide repeats 1 ASSOCIATED WITH Colorectal Neoplasms (ortholog) NW_004955514 2752499 2786067 - 102010399 AGCD01067087;AGCD01067088;GBCE01069521;XM_005408779;XM_013506767;XM_013506768;XM_013506769;XM_013506770 XP_005408836;XP_013362221;XP_013362222;XP_013362223;XP_013362224 MODEL 8885973 pseudo LOC102022636 DET1- and DDB1-associated protein 1 pseudogene NW_004955441 730533 730837 + 102022636 AGCD01036732 MODEL 8818778 protein-coding Klhl8 kelch like family member 8 INVOLVED IN protein ubiquitination (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); catecholaminergic polymorphic ventricular tachycardia (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); nucleoplasm (ortholog) NW_004955474 2652992 2710616 + 102016915 AGCD01054302;GBDF01077573;XM_005401340;XM_005401341;XM_013502771 XP_005401397;XP_005401398;XP_013358225 MODEL 39133694 mirna MIR7-3 microRNA 7-3 8770272 pseudo LOC102007347 heterogeneous nuclear ribonucleoprotein A1-like 2 NW_004955494 2464464 2465407 + 102007347 AGCD01061438 MODEL 8876699 protein-coding Spib Spi-B transcription factor ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN immature B cell differentiation (ortholog); macrophage differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Mycoplasma pneumoniae pneumonia (ortholog); primary biliary cholangitis (ortholog) NW_004955559 705809 711407 - 102019209 AGCD01073609;GBBH01186641;XM_005412785;XM_005412786;XM_013509028;XM_013509029;XM_013509030 XP_005412842;XP_005412843;XP_013364482;XP_013364483;XP_013364484 MODEL 8765453 pseudo LOC102003338 zinc finger protein 3-like NW_004955415 14712827 14722881 - 102003338 AGCD01016308 MODEL 8909214 protein-coding LOC102024035 acyl-CoA desaturase 1-like NW_004955507 6193698 6208835 + 102024035 AGCD01065697;XM_005407697;XM_005407698 XP_005407754;XP_005407755 MODEL 8965215 ncrna LOC102005907 uncharacterized LOC102005907 NW_004955410 11624781 11626736 - 102005907 AGCD01010829;GBDF01087824;XR_259837 MODEL 8896741 protein-coding LOC102022638 olfactory receptor 4N4 NW_004955550 574663 575589 - 102022638 AGCD01072511;XM_005412134 XP_005412191 MODEL 8790459 protein-coding Tnfrsf12a TNF receptor superfamily member 12A INVOLVED IN cell adhesion (ortholog); extrinsic apoptotic signaling pathway (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog); ruffle (ortholog) NW_004955442 14320159 14322146 - 102007817 AGCD01037810;GBCE01031231;XM_005391378 XP_005391435 MODEL 39132965 snrna U1 U1 spliceosomal RNA 8747471 pseudo LOC102006216 mitochondrial calcium uniporter regulator 1 pseudogene NW_004955408 1490717 1491878 + 102006216 AGCD01007960 MODEL 9052001 protein-coding LOC102009995 CMRF35-like molecule 6 NW_004955553 1453306 1458327 + 102009995 AGCD01072882;GBDK01277584;XM_005412239 XP_005412296 MODEL 10256798 ncrna LOC106146925 uncharacterized LOC106146925 NW_004955505 6647464 6659761 + 106146925 AGCD01065180;GBDF01139869;XR_001231572 MODEL 8891881 protein-coding Vps26b VPS26, retromer complex component B INVOLVED IN cellular response to type II interferon (ortholog); regulation of neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); retrograde transport, endosome to Golgi (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Isobutyryl-CoA Dehydrogenase Deficiency (ortholog); Jacobsen Syndrome (ortholog); FOUND IN early endosome (ortholog); glutamatergic synapse (ortholog); late endosome (ortholog) NW_004955412 35035730 35061441 + 102029840 AGCD01013397;GBDF01192266;XM_005378591;XM_013511061;XM_013511062;XM_013511063 XP_005378648;XP_013366515;XP_013366516;XP_013366517 MODEL 8917558 protein-coding Erfe erythroferrone ENCODES a protein that exhibits hormone activity (ortholog); identical protein binding (ortholog); molecular sequestering activity (ortholog); INVOLVED IN establishment of localization in cell (ortholog); fatty acid transport (ortholog); intracellular iron ion homeostasis (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog) NW_004955542 2408504 2415522 - 102016097 AGCD01071522;GBDF01279710;XM_013508015;XM_013508016 XP_013363469;XP_013363470 MODEL 8929077 protein-coding Sapcd2 suppressor APC domain containing 2 INVOLVED IN establishment of mitotic spindle orientation (ortholog); negative regulation of protein localization to cell cortex (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN apical cortex (ortholog); apical junction complex (ortholog); cytosol (ortholog) NW_004955513 5086379 5090876 - 102030109 AGCD01066954;GBDF01156921;XM_013506719 XP_013362173 MODEL 39132766 snrna U6 U6 spliceosomal RNA 9040946 ncrna LOC102007678 uncharacterized LOC102007678 NW_004955427 4628626 4654041 - 102007678 AGCD01026970;AGCD01026971;GBDF01253448;XR_261233 MODEL 8759889 protein-coding Tamalin trafficking regulator and scaffold protein tamalin ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); small GTPase binding (ortholog); INVOLVED IN regulation of postsynaptic neurotransmitter receptor internalization (ortholog); signal transduction (ortholog); ASSOCIATED WITH syndromic microphthalmia 5 (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog); postsynaptic density (ortholog) NW_004955547 2377612 2385918 + 102017509 AGCD01072277;AGCD01072278;AGCD01072279;GBBH01150769;GBDK01141280;XM_013508501;XM_013508503 XP_013363955;XP_013363957 MODEL 10151687 ncrna LOC106146926 uncharacterized LOC106146926 NW_004955505 7396179 7397795 - 106146926 AGCD01065204;XR_001231573 MODEL 8803096 protein-coding LOC102019554 solute carrier family 22 member 9 NW_004955599 192839 200622 + 102019554 AGCD01076629;AGCD01076630;GBDF01226037;XM_013510037 XP_013365491 MODEL 8865835 protein-coding Xrcc1 X-ray repair cross complementing 1 ENCODES a protein that exhibits 3' overhang single-stranded DNA endodeoxyribonuclease activity (ortholog); ADP-D-ribose modification-dependent protein binding (ortholog); enzyme binding (ortholog); INVOLVED IN base-excision repair (ortholog); DNA damage response (ortholog); DNA repair (ortholog); PARTICIPATES IN base excision repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH 5 Alpha Fluorouracil Toxicity (ortholog); asphyxia neonatorum (ortholog); autosomal recessive spinocerebellar ataxia 26 (ortholog); FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); ERCC4-ERCC1 complex (ortholog) NW_004955555 1293416 1315839 - 102016958 AGCD01073070;AGCD01073071;AGCD01073072;GBDF01053241;XM_005412443;XM_005412444 XP_005412500;XP_005412501 MODEL 39132767 snrna U6 U6 spliceosomal RNA 8804585 protein-coding LOC102023725 olfactory receptor 4C15-like NW_004955511 205120 206055 + 102023725 AGCD01066323;XM_005407937 XP_005407994 MODEL 8712631 ncrna LOC102009219 uncharacterized LOC102009219 NW_004955438 11481547 11499549 - 102009219 AGCD01035239;AGCD01035240;GBDF01306429;XR_261927 MODEL 8993605 ncrna LOC102017090 uncharacterized LOC102017090 NW_004955405 27953106 27986378 + 102017090 AGCD01005228;AGCD01005229;GBDF01303457;XR_001236097;XR_001236099;XR_259399 MODEL 8961409 protein-coding Tamm41 TAM41 mitochondrial translocator assembly and maintenance homolog ENCODES a protein that exhibits phosphatidate cytidylyltransferase activity (ortholog); PARTICIPATES IN cardiolipin biosynthetic pathway; ASSOCIATED WITH combined oxidative phosphorylation deficiency (ortholog); combined oxidative phosphorylation deficiency 56 (ortholog); Deglutition Disorders (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955429 14452473 14500441 - 102016831 AGCD01028783;GBDI01325805;XM_005387013;XM_005387014;XM_013515554 XP_005387070;XP_005387071;XP_013371008 MODEL 9000470 protein-coding LOC102024037 olfactory receptor 140-like NW_004955511 175875 177677 + 102024037 AGCD01066321;XM_005407938 XP_005407995 MODEL 9050760 protein-coding LOC102027096 uncharacterized LOC102027096 NW_004955429 22854202 22855215 - 102027096 AGCD01029042;GBCE01059856;XM_005387210 XP_005387267 MODEL 39132967 snrna U1 U1 spliceosomal RNA 39132256 snrna U6 U6 spliceosomal RNA 8831303 pseudo LOC102009222 C-Myc-binding protein pseudogene NW_004955440 3127945 3130866 - 102009222 AGCD01036236 MODEL 8810179 ncrna LOC102025091 uncharacterized LOC102025091 NW_004955409 24554548 24560508 + 102025091 AGCD01010087;GBDF01074865;XR_001232659;XR_259792 MODEL 8788107 ncrna LOC102024038 uncharacterized LOC102024038 NW_004955429 22472048 22477861 - 102024038 AGCD01029028;GBCB01002019;XR_001234460;XR_261388 MODEL 8834753 protein-coding Dgkk diacylglycerol kinase kappa ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); intracellular signal transduction (ortholog); response to oxidative stress (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); hypospadias (ortholog); FOUND IN plasma membrane (ortholog) NW_004955543 1468328 1601101 - 102017385 AGCD01071623;AGCD01071624;AGCD01071625;XM_005411355 XP_005411412 MODEL 39132969 snrna U1 U1 spliceosomal RNA 39132257 snrna U6 U6 spliceosomal RNA 151707894 mirna MIR708 microRNA 708 8700760 pseudo LOC102024039 RNA exonuclease 1 homolog pseudogene NW_004955431 8914638 8931636 - 102024039 AGCD01030148;AGCD01030149;XM_005387663 MODEL 8723366 protein-coding Znf451 zinc finger protein 451 ENCODES a protein that exhibits SUMO ligase activity (ortholog); transcription corepressor activity (ortholog); transcription regulator inhibitor activity (ortholog); INVOLVED IN negative regulation of transcription initiation by RNA polymerase II (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); protein sumoylation (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN nucleus (ortholog); PML body (ortholog) NW_004955502 3003822 3087529 - 102012341 AGCD01064308;AGCD01064309;AGCD01064310;GBCE01142291;GBDK01357332;XM_013505835 XP_013361289 MODEL 39132971 snrna U1 U1 spliceosomal RNA 9003977 protein-coding LOC102013527 olfactory receptor 5AK2-like NW_004955511 2117904 2118839 + 102013527 AGCD01066392;XM_005407984 XP_005408041 MODEL 9029266 protein-coding Dgkq diacylglycerol kinase theta ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); diacylglycerol-dependent serine/threonine kinase activity (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cellular response to bile acid (ortholog); diacylglycerol metabolic process (ortholog); ASSOCIATED WITH cherubism (ortholog); Mental Retardation, Autosomal Recessive 53 (ortholog); Sjogren's syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoskeleton (ortholog); cytosol (ortholog) NW_004955514 452548 475240 - 102004415 AGCD01067010;AGCD01067011;GBCB01099242;XM_005408848 XP_005408905 MODEL 8866049 protein-coding Gpr55 G protein-coupled receptor 55 ENCODES a protein that exhibits cannabinoid receptor activity (ortholog); INVOLVED IN bone resorption (ortholog); negative regulation of osteoclast differentiation (ortholog); phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH disease of cellular proliferation (ortholog); hyperglycemia (ortholog); Hypertriglyceridemia (ortholog); FOUND IN plasma membrane (ortholog) NW_004955453 4470602 4520036 + 102024754 AGCD01044691;AGCD01044692;GBDF01222892;XM_005395405;XM_005395406;XM_005395407;XM_013519755;XR_001236125 XP_005395462;XP_005395463;XP_005395464;XP_013375209 MODEL 8834951 protein-coding LOC102021350 histone H3 NW_004955483 969514 970652 - 102021350 AGCD01057638;GBDF01240962;XM_013503791 XP_013359245 MODEL 8917752 ncrna LOC102023727 uncharacterized LOC102023727 NW_004955512 653213 665302 + 102023727 AGCD01066620;GBDF01041146;XR_264438 MODEL 150537122 mirna MIR744 microRNA 744 8807977 protein-coding Lamp3 lysosomal associated membrane protein 3 INVOLVED IN lipid metabolic process (ortholog); negative regulation of proteasomal protein catabolic process (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); congenital disorder of glycosylation Id (ortholog); Currarino syndrome (ortholog); FOUND IN alveolar lamellar body membrane (ortholog); early endosome (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955420 24155793 24185366 + 102005941 AGCD01021276;AGCD01021277;AGCD01021278;AGCD01021279;AGCD01021280;AGCD01021281;AGCD01021282;GBDK01015482;XM_005383369;XM_005383370;XM_005383371 XP_005383426;XP_005383427;XP_005383428 MODEL 9055450 protein-coding LOC102028771 melanoma-associated antigen 10-like NW_004955498 7617843 7618820 - 102028771 AGCD01063153;GBDF01277149;GBDF01277150;XM_013505541 XP_013360995 MODEL 8993255 pseudo LOC102006218 attractin pseudogene NW_004955458 8263305 8377868 - 102006218 AGCD01047602;AGCD01047603;AGCD01047604 MODEL 8878215 pseudo LOC102020462 60S ribosomal protein L39 pseudogene NW_004955499 8125958 8126152 - 102020462 AGCD01063618 MODEL 10211048 ncrna LOC106149188 uncharacterized LOC106149188 NW_004955439 5941083 5951200 - 106149188 AGCD01035744;XR_001235184 MODEL 8851772 protein-coding Bltp1 bridge-like lipid transfer protein family member 1 INVOLVED IN endocytic recycling (ortholog); endosomal transport (ortholog); lipid transport (ortholog); ASSOCIATED WITH Alkuraya-Kucinskas syndrome (ortholog); clubfoot (ortholog); Dandy-Walker syndrome (ortholog) NW_004955428 18224987 18424425 - 102016180 AGCD01028058;AGCD01028059;AGCD01028060;AGCD01028061;AGCD01028062;AGCD01028063;GBDJ01004871;XM_005386777;XM_013515288;XM_013515289;XM_013515290;XM_013515291;XM_013515292;XM_013515293;XM_013515294;XM_013515295 XP_005386834;XP_013370742;XP_013370743;XP_013370744;XP_013370745;XP_013370746;XP_013370747;XP_013370748;XP_013370749 MODEL 8709587 pseudo LOC102026025 elongation factor 1-alpha 1 pseudogene NW_004955425 22371390 22372772 + 102026025 AGCD01025819 MODEL 8799439 ncrna LOC102024664 uncharacterized LOC102024664 NW_004955414 7606264 7623903 - 102024664 AGCD01014966;GBDF01041443;XR_260162 MODEL 8964610 protein-coding Neto2 neuropilin and tolloid like 2 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); INVOLVED IN neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); positive regulation of excitatory postsynaptic potential (ortholog); regulation of neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); COVID-19 (ortholog); glycogen storage disease IXB (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog); postsynaptic density membrane (ortholog) NW_004955474 8035874 8106397 + 102005370 AGCD01054539;AGCD01054540;AGCD01054541;AGCD01054542;GBDF01252896;XM_005401465 XP_005401522 MODEL 8982933 protein-coding LOC102007680 olfactory receptor 13A1-like NW_004955507 6487198 6488139 - 102007680 AGCD01065718;XM_005407725 XP_005407782 MODEL 10249114 ncrna LOC106149189 uncharacterized LOC106149189 NW_004955439 9125750 9131130 - 106149189 AGCD01035827;GBBH01210293;XR_001235186 MODEL 8709807 pseudo LOC102008830 ATP synthase F(0) complex subunit C3, mitochondrial pseudogene NW_004955464 13405011 13405720 + 102008830 AGCD01050275 MODEL 8992261 pseudo LOC102003345 tubulin alpha-1C chain-like NW_004955483 529540 535066 - 102003345 AGCD01057622;XR_263877 MODEL 39132768 snrna U6 U6 spliceosomal RNA 8702063 protein-coding Bltp2 bridge-like lipid transfer protein family member 2 ASSOCIATED WITH prostate cancer (ortholog) NW_004955481 4509840 4544706 + 102029080 AGCD01056943;GBCE01116508;GBCQ01065420;XM_005402743 XP_005402800 MODEL 8774714 ncrna LOC102022642 uncharacterized LOC102022642 NW_004955559 855626 857503 + 102022642 AGCD01073617;GBDK01270982;XR_264998 MODEL 8836264 pseudo LOC102012334 60S ribosomal protein L21 pseudogene NW_004955422 13359228 13359730 + 102012334 AGCD01022822;XM_005384951 MODEL 10265548 ncrna LOC106149190 uncharacterized LOC106149190 NW_004955439 9575413 9579880 + 106149190 AGCD01035840;GBDJ01053469;XR_001235187 MODEL 9051602 ncrna LOC102022986 uncharacterized LOC102022986 NW_004955402 35983014 36086474 - 102022986 AGCD01000910;AGCD01000911;AGCD01000912;GBDF01084664;XR_001232816;XR_001232817;XR_001232818;XR_259079 MODEL 39131518 protein-coding GPR55 G protein-coupled receptor 55 10197946 ncrna LOC106150034 uncharacterized LOC106150034 NW_004955461 1659213 1706221 + 106150034 AGCD01048819;AGCD01048820;GBDF01116645;XR_001236573 MODEL 9041861 protein-coding Vps26c VPS26 endosomal protein sorting factor C INVOLVED IN endocytic recycling (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); epilepsy (ortholog) NW_004955407 36357366 36381904 - 102014534 AGCD01007764;AGCD01007765;GBCQ01067841;XM_013504689 XP_013360143 MODEL 8733166 protein-coding Lamp5 lysosomal associated membrane protein family member 5 INVOLVED IN presynaptic modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH ALAGILLE SYNDROME 1 (ortholog); congenital myasthenic syndrome 18 (ortholog); developmental and epileptic encephalopathy 12 (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); dendrite membrane (ortholog); early endosome membrane (ortholog) NW_004955415 19488533 19502599 + 102022494 AGCD01016470;GBDJ01037029;XM_005380867 XP_005380924 MODEL 9065582 ncrna LOC102006219 uncharacterized LOC102006219 NW_004955409 9811332 9815400 - 102006219 AGCD01009449;GBDF01214479;XR_259763 MODEL 10185733 ncrna LOC106146928 uncharacterized LOC106146928 NW_004955505 4295110 4297169 - 106146928 AGCD01065096;GBDI01288795;XR_001231575 MODEL 10161241 protein-coding LOC106149191 NKG2D ligand 1-like NW_004955439 11310873 11313907 + 106149191 AGCD01035897;GBDF01117569;XM_013517321 XP_013372775 MODEL 8955256 protein-coding LOC102012336 guanylate-binding protein 4-like NW_004955423 4956079 4970449 + 102012336 AGCD01023550;GBDK01006373;XM_013514414;XM_013514415 XP_013369868;XP_013369869 MODEL 9063620 ncrna LOC102005908 uncharacterized LOC102005908 NW_004955410 34743414 34763395 - 102005908 AGCD01011404;GBDF01221838;XR_001232718 MODEL 8987850 ncrna LOC102024042 uncharacterized LOC102024042 NW_004955522 936102 943819 - 102024042 AGCD01068353;AGCD01068354;GBDF01208604;XR_001231896 MODEL 8906378 pseudo LOC102009996 cytochrome P450 2B4-like NW_004955555 49910 64514 - 102009996 AGCD01073023 MODEL 39132973 snrna U1 U1 spliceosomal RNA 9026840 protein-coding LOC102007682 olfactory receptor 5M3 NW_004955511 1640219 1641157 - 102007682 AGCD01066377;XM_005407968 XP_005408025 MODEL 39132769 snrna U6 U6 spliceosomal RNA 8700366 protein-coding LOC102008833 olfactory receptor 1F12 NW_004955465 13529663 13530604 + 102008833 AGCD01050613;XM_005398956 XP_005399013 MODEL 8816416 ncrna LOC102005909 uncharacterized LOC102005909 NW_004955411 1623772 1628626 - 102005909 AGCD01011485;GBDF01224028;XR_001232783;XR_259911 MODEL 39131509 protein-coding TEX52 testis expressed 52 8721530 protein-coding LOC102027097 olfactory receptor 5G3-like NW_004955511 1927117 1927701 - 102027097 AGCD01066385;XM_005408249 XP_005408306 MODEL 8703303 protein-coding Idh2 isocitrate dehydrogenase (NADP(+)) 2 ENCODES a protein that exhibits isocitrate dehydrogenase (NADP+) activity (ortholog); INVOLVED IN NADP biosynthetic process (ortholog); negative regulation of glial cell migration (ortholog); negative regulation of glial cell proliferation (ortholog); ASSOCIATED WITH 2-hydroxyglutaric aciduria (ortholog); acute myeloid leukemia (ortholog); acute myocardial infarction (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); peroxisome (ortholog) NW_004955416 15197611 15212919 + 102023150 AGCD01017308;AGCD01017309;GBCQ01003629;XM_005381533;XM_005381534 XP_005381590;XP_005381591 MODEL 39133689 mirna MIR761 microRNA 761 8871429 pseudo LOC102017994 olfactory receptor 7E24-like NW_004955495 730711 731673 - 102017994 AGCD01061651 MODEL 8700843 pseudo LOC102028772 cytoskeleton-associated protein 2 pseudogene NW_004955424 20618151 20619511 - 102028772 AGCD01024867 MODEL 9026129 protein-coding LOC102009223 cytochrome P450 1B1 ENCODES a protein that exhibits estrogen 16-alpha-hydroxylase activity (ortholog); heme binding (ortholog); monooxygenase activity (ortholog); INVOLVED IN adrenal gland development (ortholog); angiogenesis (ortholog); arachidonate metabolic process (ortholog); PARTICIPATES IN phase I biotransformation pathway via cytochrome P450; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); adenoma (ortholog); anterior segment dysgenesis (ortholog); FOUND IN mitochondrion (ortholog) NW_004955441 5803397 5812131 - 102009223 AGCD01036887;GBDF01179111;XM_005390882;XM_013517545 XP_005390939;XP_013372999 MODEL 8759282 pseudo LOC102020465 glutamine synthetase-like NW_004955501 7599438 7600949 - 102020465 AGCD01064219 MODEL 8838588 protein-coding Gpr6 G protein-coupled receptor 6 ENCODES a protein that exhibits sphingosine-1-phosphate receptor activity (ortholog); INVOLVED IN positive regulation of cytosolic calcium ion concentration (ortholog) NW_004955411 34781598 34783926 + 102021322 AGCD01012416;XM_005377881 XP_005377938 MODEL 10208033 ncrna LOC106150035 uncharacterized LOC106150035 NW_004955406 19775774 19777754 - 106150035 AGCD01006089;XR_001236586 MODEL 8857106 protein-coding LOC102019555 uncharacterized LOC102019555 NW_004955604 471855 512915 + 102019555 AGCD01076908;AGCD01076909;AGCD01076910;AGCD01076911;AGCD01076912;AGCD01076913;AGCD01076914;AGCD01076915;AGCD01076916;AGCD01076917;AGCD01076918;AGCD01076919;XM_005414874 XP_005414931 MODEL 39133683 mirna MIR767 microRNA 767 8989701 protein-coding LOC102026028 cytochrome P450 2E1 ENCODES a protein that exhibits 4-nitrophenol 2-monooxygenase activity (ortholog); enzyme binding (ortholog); heme binding (ortholog); INVOLVED IN 4-nitrophenol metabolic process (ortholog); lipid hydroxylation (ortholog); long-chain fatty acid metabolic process (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH acoustic neuroma (ortholog); acute kidney failure (ortholog); acute lymphoblastic leukemia (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog) NW_004955507 6293162 6303255 - 102026028 AGCD01065703;GBDJ01062841;XM_005407704 XP_005407761 MODEL 8964142 ncrna LOC102009224 uncharacterized LOC102009224 NW_004955441 12505345 12519740 + 102009224 AGCD01037123;GBDF01308251;XR_262074 MODEL 8855845 protein-coding Neu1 neuraminidase 1 ENCODES a protein that exhibits alpha-sialidase activity (ortholog); exo-alpha-sialidase activity (ortholog); INVOLVED IN oligosaccharide catabolic process (ortholog); positive regulation of neuron projection development (ortholog); regulation of myoblast proliferation (ortholog); ASSOCIATED WITH genetic disease (ortholog); glycoproteinosis (ortholog); Hydrops Fetalis (ortholog); FOUND IN cell junction (ortholog); cell surface (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955437 378708 383076 - 102030665 AGCD01034127;AGCD01034128;GBDI01136897;XM_005389390 XP_005389447 MODEL 8971025 ncrna LOC102019556 uncharacterized LOC102019556 NW_004955403 15853903 15937454 - 102019556 AGCD01002055;AGCD01002056;GBDF01108949;XR_259174 MODEL 9059283 protein-coding Bltp3a bridge-like lipid transfer protein family member 3A ENCODES a protein that exhibits histone deacetylase binding (ortholog); identical protein binding (ortholog); ASSOCIATED WITH Familial Prostate Cancer (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); systemic lupus erythematosus (ortholog); FOUND IN late endosome (ortholog) NW_004955437 2844544 2905073 + 102012244 AGCD01034288;AGCD01034289;AGCD01034290;AGCD01034291;AGCD01034292;GBDF01200537;XM_005390117 XP_005390174 MODEL 8874220 protein-coding Erfl ETS repressor factor like ASSOCIATED WITH schizophrenia (ortholog) NW_004955555 929984 941311 + 102008465 AGCD01073053;AGCD01073054;GBCE01120286;XM_005412413;XM_013508718 XP_005412470;XP_013364172 MODEL 39132975 snrna U1 U1 spliceosomal RNA 8727902 ncrna LOC102024044 uncharacterized LOC102024044 NW_004955435 14761331 14782655 + 102024044 AGCD01033249;AGCD01033250;GBDF01046413;XR_001234869;XR_001234870;XR_261690;XR_261691;XR_261692;XR_261693;XR_261694 MODEL 8839673 protein-coding Usp2 ubiquitin specific peptidase 2 ENCODES a protein that exhibits cyclin binding (ortholog); cysteine-type deubiquitinase activity (ortholog); identical protein binding (ortholog); INVOLVED IN circadian behavior (ortholog); circadian regulation of gene expression (ortholog); entrainment of circadian clock by photoperiod (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); membrane (ortholog) NW_004955412 20435778 20461898 - 102006888 AGCD01013009;GBCB01007595;XM_005378335;XM_005378336;XM_005378337;XM_005378338;XM_005378339;XM_005378340;XM_005378341 XP_005378392;XP_005378393;XP_005378394;XP_005378395;XP_005378396;XP_005378397;XP_005378398 MODEL 8946861 protein-coding Klhl9 kelch like family member 9 ENCODES a protein that exhibits cullin family protein binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); regulation of cytokinesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); schizophrenia (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); midbody (ortholog) NW_004955472 12851352 12854245 - 102007110 AGCD01053821;GBCC01033131;XM_005401171 XP_005401228 MODEL 8792186 protein-coding Spic Spi-C transcription factor ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN blastocyst development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog) NW_004955405 36946481 36956472 + 102026598 AGCD01005431;GBDI01243516;XM_005374550 XP_005374607 MODEL 8890650 protein-coding Ppp1r9b protein phosphatase 1 regulatory subunit 9B ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); D2 dopamine receptor binding (ortholog); INVOLVED IN actin filament depolymerization (ortholog); actin filament organization (ortholog); calcium-mediated signaling (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Cognitive Dysfunction (ortholog); Colorectal Neoplasms (ortholog); FOUND IN actin cytoskeleton (ortholog); cortical actin cytoskeleton (ortholog); cytoplasm (ortholog) NW_004955451 11516548 11530263 + 102015685 AGCD01043357;GBDF01098962;XM_005394179 XP_005394236 MODEL 39132977 snrna U1 U1 spliceosomal RNA 8835693 protein-coding Bltp3b bridge-like lipid transfer protein family member 3B ENCODES a protein that exhibits GARP complex binding (ortholog); lipid transfer activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); intermembrane lipid transfer (ortholog); ASSOCIATED WITH juvenile rheumatoid arthritis (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog) NW_004955405 35814803 35935553 - 102019020 AGCD01005402;AGCD01005403;AGCD01005404;AGCD01005405;GBDJ01165887;XM_013518586 XP_013374040 MODEL 9032804 ncrna LOC102003089 uncharacterized LOC102003089 NW_004955406 36472700 36585512 - 102003089 AGCD01006556;AGCD01006557;AGCD01006558;AGCD01006559;GBDF01249792;XR_001236830;XR_001236832;XR_001236833 MODEL 10175391 ncrna LOC106146929 uncharacterized LOC106146929 NW_004955505 5954294 5966626 + 106146929 AGCD01065159;GBBH01153666;XR_001231576 MODEL 8985084 protein-coding Lrch3 leucine rich repeats and calponin homology domain containing 3 INVOLVED IN septin cytoskeleton organization (ortholog); ASSOCIATED WITH Diamond-Blackfan anemia 5 (ortholog); FOUND IN cytosol (ortholog) NW_004955420 11998567 12086872 - 102027530 AGCD01020849;AGCD01020850;AGCD01020851;GBDI01011641;XM_005383084;XM_005383085;XM_005383086;XM_005383087;XM_005383088;XM_005383089;XM_013513362;XR_001233690 XP_005383141;XP_005383142;XP_005383143;XP_005383144;XP_005383145;XP_005383146;XP_013368816 MODEL 8975333 protein-coding Vps28 VPS28 subunit of ESCRT-I ENCODES a protein that exhibits ubiquitin binding (ortholog); INVOLVED IN negative regulation of protein ubiquitination (ortholog); positive regulation of protein catabolic process (ortholog); positive regulation of ubiquitin-dependent endocytosis (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955454 3049977 3054078 - 102006310 AGCD01045050;GBDI01021568;XM_005395888;XM_013520278;XM_013520279 XP_005395945;XP_013375732;XP_013375733 MODEL 8981912 protein-coding Erg ETS transcription factor ERG ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); epilepsy (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 37372471 37613674 - 102019363 AGCD01007780;AGCD01007781;AGCD01007782;AGCD01007783;AGCD01007784;AGCD01007785;GBDK01013561;XM_005375759;XM_005375760;XM_005375761;XM_013504784 XP_005375816;XP_005375817;XP_005375818;XP_013360238 MODEL 8775736 protein-coding LOC102012342 uncharacterized LOC102012342 NW_004955504 2063804 2068813 - 102012342 AGCD01064853;GBDI01262175;GBDK01263929;XM_013505916 XP_013361370 MODEL 8741623 protein-coding LOC102015321 zinc finger protein 14-like NW_004955487 57670 76813 - 102015321 AGCD01059204;AGCD01059205;AGCD01059206;GBDF01011198;XM_013504398;XM_013504399;XM_013504400;XM_013504401;XM_013504402;XM_013504403 XP_013359852;XP_013359853;XP_013359854;XP_013359855;XP_013359856;XP_013359857 MODEL 8775609 protein-coding Tanc1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 INVOLVED IN dendritic spine maintenance (ortholog); myoblast fusion (ortholog); regulation of postsynapse organization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); intellectual disability (ortholog); FOUND IN axon terminus (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955449 14353693 14586010 - 102007717 AGCD01042164;AGCD01042165;AGCD01042166;AGCD01042167;GBDK01276459;XM_005393379;XM_005393380;XM_005393381;XM_013518760;XM_013518761;XM_013518762;XM_013518763;XM_013518764;XM_013518765;XM_013518767 XP_005393436;XP_005393437;XP_005393438;XP_013374214;XP_013374215;XP_013374216;XP_013374217;XP_013374218;XP_013374219;XP_013374221 MODEL 39132979 snrna U1 U1 spliceosomal RNA 8753505 protein-coding LOC102013528 olfactory receptor 8I2 ASSOCIATED WITH intellectual disability (ortholog) NW_004955511 1030944 1031876 + 102013528 AGCD01066354;XM_005408222 XP_005408279 MODEL 8800978 ncrna LOC102026040 uncharacterized LOC102026040 NW_004955436 13438968 13446439 + 102026040 AGCD01033858;GBDF01010335;XR_261789 MODEL 8890675 protein-coding Sar1a secretion associated Ras related GTPase 1A ENCODES a protein that exhibits amino acid sensor activity (ortholog); G protein activity (ortholog); INVOLVED IN cellular response to leucine starvation (ortholog); COPII vesicle coating (ortholog); COPII-coated vesicle cargo loading (ortholog); FOUND IN COPII vesicle coat (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955437 21075632 21093608 + 102015889 AGCD01034896;GBDF01048679;XM_005390065;XM_005390066;XM_005390067 XP_005390122;XP_005390123;XP_005390124 MODEL 8730919 protein-coding Slc15a1 solute carrier family 15 member 1 ENCODES a protein that exhibits channel inhibitor activity (ortholog); dipeptide transmembrane transporter activity (ortholog); peptide:proton symporter activity (ortholog); INVOLVED IN dipeptide import across plasma membrane (ortholog); metanephric proximal tubule development (ortholog); negative regulation of amino acid transport (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly (ortholog); holoprosencephaly 5 (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); membrane (ortholog) NW_004955404 11799370 11856854 + 102014734 AGCD01003446;GBDF01119603;XM_005374072 XP_005374129 MODEL 9066826 protein-coding Sh3tc2 SH3 domain and tetratricopeptide repeats 2 INVOLVED IN myelination in peripheral nervous system (ortholog); peripheral nervous system myelin maintenance (ortholog); regulation of ERBB signaling pathway (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); autosomal dominant distal hereditary motor neuronopathy 14 (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog) NW_004955415 5286475 5354880 + 102030301 AGCD01015992;AGCD01015993;AGCD01015994;GBDF01192243;XM_005380627;XM_005380628;XM_005380629;XM_005380630;XM_005380631;XM_013512395;XM_013512396;XM_013512397;XR_001233271 XP_005380684;XP_005380685;XP_005380686;XP_005380687;XP_005380688;XP_013367849;XP_013367850;XP_013367851 MODEL 8713381 ncrna LOC102012343 uncharacterized LOC102012343 NW_004955427 8525675 8532142 - 102012343 AGCD01027075;GBDF01226078;XR_261241 MODEL 39132258 snrna U6 U6 spliceosomal RNA 8799841 protein-coding Idh3a isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha ENCODES a protein that exhibits isocitrate dehydrogenase (NAD+) activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN tricarboxylic acid cycle (ortholog); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; mitochondrial complex II deficiency pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); fundus dystrophy (ortholog); FOUND IN isocitrate dehydrogenase complex (NAD+) (ortholog); mitochondrion (ortholog) NW_004955450 685905 703593 + 102007832 AGCD01042342;AGCD01042343;GBDF01081591;XM_005393440 XP_005393497 MODEL 9023358 protein-coding Slc15a2 solute carrier family 15 member 2 ENCODES a protein that exhibits dipeptide transmembrane transporter activity (ortholog); high-affinity oligopeptide transmembrane transporter activity (ortholog); peptide:proton symporter activity (ortholog); INVOLVED IN antibacterial innate immune response (ortholog); dipeptide import across plasma membrane (ortholog); dipeptide transport (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); Animal Disease Models (ortholog); familial hypocalciuric hypercalcemia (ortholog); FOUND IN apical plasma membrane (ortholog); membrane (ortholog); phagocytic vesicle membrane (ortholog) NW_004955427 21221778 21255725 + 102005279 AGCD01027436;AGCD01027437;AGCD01027438;AGCD01027439;GBCE01001662;XM_005386496;XM_013515099;XM_013515100 XP_005386553;XP_013370553;XP_013370554 MODEL 9007293 protein-coding Sar1b secretion associated Ras related GTPase 1B ENCODES a protein that exhibits amino acid sensor activity (ortholog); G protein activity (ortholog); INVOLVED IN cellular response to leucine starvation (ortholog); COPII vesicle coating (ortholog); COPII-coated vesicle cargo loading (ortholog); ASSOCIATED WITH chylomicron retention disease (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN COPII vesicle coat (ortholog); cytosol (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955408 5737197 5761228 - 102018896 AGCD01008150;AGCD01008151;GBBH01186879;XM_005376158 XP_005376215 MODEL 8816327 protein-coding Tanc2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 ENCODES a protein that exhibits structural constituent of postsynaptic density (ortholog); INVOLVED IN dense core granule cytoskeletal transport (ortholog); in utero embryonic development (ortholog); regulation of dendritic spine development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Developmental Disabilities (ortholog); epilepsy (ortholog); FOUND IN dendritic spine (ortholog); glutamatergic synapse (ortholog); postsynaptic density (ortholog) NW_004955478 8370813 8757132 - 102003127 AGCD01056024;AGCD01056025;AGCD01056026;AGCD01056027;AGCD01056028;AGCD01056029;AGCD01056030;AGCD01056031;AGCD01056032;AGCD01056033;AGCD01056034;AGCD01056035;AGCD01056036;AGCD01056037;AGCD01056038;AGCD01056039;GBDF01252904;XM_005402226;XM_005402228;XM_005402229;XM_005402230;XM_005402233;XM_013503196 XP_005402283;XP_005402285;XP_005402286;XP_005402287;XP_005402290;XP_013358650 MODEL 8973596 protein-coding Tnfrsf13b TNF receptor superfamily member 13B INVOLVED IN B cell homeostasis (ortholog); hematopoietic progenitor cell differentiation (ortholog); negative regulation of B cell proliferation (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); Brain Injuries (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955577 930612 971698 + 102025957 AGCD01075420;AGCD01075421;AGCD01075422;AGCD01075423;AGCD01075424;AGCD01075425;GBBH01208630;GBDJ01195577;XM_013509632;XM_013509634 XP_013365086;XP_013365088 MODEL 9043737 protein-coding Sdk1 sidekick cell adhesion molecule 1 INVOLVED IN behavioral response to cocaine (ortholog); regulation of dendritic spine development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); megacolon (ortholog); prostate cancer (ortholog) NW_004955460 11278136 12148619 - 102009470 AGCD01048631;AGCD01048632;AGCD01048633;AGCD01048634;AGCD01048635;AGCD01048636;AGCD01048637;AGCD01048638;AGCD01048639;AGCD01048640;AGCD01048641;AGCD01048642;AGCD01048643;AGCD01048644;AGCD01048645;AGCD01048646;AGCD01048647;AGCD01048648;AGCD01048649;GBCE01150993;GBDJ01351857;XM_005397857 XP_005397914 MODEL 39132259 snrna U6 U6 spliceosomal RNA 8973463 ncrna LOC102021351 uncharacterized LOC102021351 NW_004955485 4631152 4633682 - 102021351 AGCD01058572;GBDF01010932;XR_263905 MODEL 8839345 protein-coding Znf462 zinc finger protein 462 INVOLVED IN chromatin organization (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Breast Cancer, Familial (ortholog); cleft lip (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955419 19730432 19871189 - 102025247 AGCD01020219;AGCD01020220;GBCB01087339;XM_005382765;XM_005382766;XM_005382767;XM_005382768;XM_005382769;XM_005382770;XM_013513243;XM_013513244;XM_013513245;XM_013513246;XM_013513247 XP_005382822;XP_005382823;XP_005382824;XP_005382825;XP_005382826;XP_005382827;XP_013368697;XP_013368698;XP_013368699;XP_013368700;XP_013368701 MODEL 8971993 ncrna LOC102023730 uncharacterized LOC102023730 NW_004955517 2354221 2363914 + 102023730 AGCD01067624;AGCD01067625;GBDK01178985;XR_264550 MODEL 8953922 protein-coding Slc15a3 solute carrier family 15 member 3 ENCODES a protein that exhibits dipeptide transmembrane transporter activity (ortholog); peptidoglycan transmembrane transporter activity (ortholog); INVOLVED IN dipeptide import across plasma membrane (ortholog); peptidoglycan transport (ortholog); positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN endosome membrane (ortholog); intracellular membrane-bounded organelle (ortholog); lysosomal membrane (ortholog) NW_004955511 5574686 5582992 - 102019192 AGCD01066571;AGCD01066572;GBDI01323373;GBDJ01315022;XM_005408288 XP_005408345 MODEL 8824098 protein-coding Blvra biliverdin reductase A ENCODES a protein that exhibits biliberdin reductase (NAD+) activity (ortholog); biliverdin reductase [NAD(P)+] activity (ortholog); INVOLVED IN heme catabolic process (ortholog); PARTICIPATES IN acute intermittent porphyria pathway; erythropoietic porphyria pathway; hereditary coproporphyria pathway; ASSOCIATED WITH cholestasis (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog) NW_004955460 129077 167345 - 102010875 AGCD01048335;AGCD01048336;AGCD01048337;GBDI01175001;XM_005397710 XP_005397767 MODEL 8979146 protein-coding LOC102007351 melanoma-associated antigen 10-like NW_004955498 6985853 6996187 - 102007351 AGCD01063140;XM_005406439 XP_005406496 MODEL 9065350 protein-coding LOC102022989 uncharacterized LOC102022989 NW_004955600 495492 516773 + 102022989 AGCD01076726;AGCD01076727;AGCD01076728;GBDF01249628;GBDF01249630;XM_005414808 XP_005414865 MODEL 8840837 ncrna LOC102015324 uncharacterized LOC102015324 NW_004955494 1826458 1865444 + 102015324 AGCD01061424;GBCB01037072;XR_264104 MODEL 39132260 snrna U6 U6 spliceosomal RNA 8809504 pseudo LOC102026041 periphilin-1 pseudogene NW_004955529 485527 486763 - 102026041 AGCD01069639;XM_005410092 MODEL 8949656 protein-coding Tex52 testis expressed 52 ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog) NW_004955429 18376196 18391717 - 102022314 AGCD01028900;GBBH01116653;XM_005387117;XM_005387118;XM_013515472 XP_005387174;XP_005387175;XP_013370926 MODEL 8907591 pseudo LOC102006221 evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial pseudogene NW_004955409 19008763 19009507 - 102006221 AGCD01009854 MODEL 10317822 protein-coding LOC106149192 retinoic acid early transcript 1L protein-like NW_004955439 11357953 11359474 + 106149192 AGCD01035900;XM_013517324 XP_013372778 MODEL 8856664 protein-coding Sh3yl1 SH3 and SYLF domain containing 1 ENCODES a protein that exhibits phosphatase binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN phosphatidylinositol biosynthetic process (ortholog); regulation of ruffle assembly (ortholog); FOUND IN ruffle membrane (ortholog) NW_004955487 258116 290377 - 102005047 AGCD01059215;AGCD01059216;GBCQ01039979;XM_005404334;XM_005404336;XM_013504378 XP_005404391;XP_005404393;XP_013359832 MODEL 10225368 protein-coding Klk1 kallikrein 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); INVOLVED IN positive regulation of acute inflammatory response (ortholog); positive regulation of apoptotic process (ortholog); positive regulation of cell population proliferation (ortholog); PARTICIPATES IN kallikrein-kinin cascade pathway; ASSOCIATED WITH acute kidney failure (ortholog); Cardiomegaly (ortholog); cardiomyopathy (ortholog); FOUND IN acrosomal vesicle (ortholog); apical part of cell (ortholog); nucleus (ortholog) NW_004955559 457030 461086 + 106147433 AGCD01073586;GBBH01002600;XM_013508935 XP_013364389 MODEL 39132261 snrna U6 U6 spliceosomal RNA 9039936 protein-coding LOC102018324 chromosome unknown open reading frame, human C6orf47 ASSOCIATED WITH megacolon (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog) NW_004955437 192873 195159 - 102018324 AGCD01034108;GBCB01075013;XM_005389347 XP_005389404 MODEL 10353889 pseudo LOC106146930 zinc finger protein 606-like NW_004955407 24233264 24235066 + 106146930 AGCD01007459 MODEL 8782177 protein-coding Ppp2ca protein phosphatase 2 catalytic subunit alpha ENCODES a protein that exhibits beta-2 adrenergic receptor binding (ortholog); enzyme binding (ortholog); GABA receptor binding (ortholog); INVOLVED IN cardiac ventricle development (ortholog); cellular response to calcium ion (ortholog); cellular response to cytokine stimulus (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; ataxia telangiectasia-mutated (ATM) signaling pathway; calcium/calmodulin dependent kinase 2 signaling pathway; ASSOCIATED WITH asthma (ortholog); congestive heart failure (ortholog); Experimental Liver Neoplasms (ortholog); FOUND IN chromatin (ortholog); chromosome, centromeric region (ortholog); cytoplasm (ortholog) NW_004955408 5435117 5460361 - 102012929 AGCD01008137;AGCD01008138;GBCQ01004946;XM_005376137 XP_005376194 MODEL 10291924 ncrna LOC106149193 uncharacterized LOC106149193 NW_004955439 11540662 11559891 - 106149193 AGCD01035912;AGCD01035913;GBDJ01144587;XR_001235194;XR_001235195;XR_001235196 MODEL 8771502 protein-coding Lrch4 leucine rich repeats and calponin homology domain containing 4 INVOLVED IN membrane raft assembly (ortholog); positive regulation of toll-like receptor signaling pathway (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN plasma membrane (ortholog); PML body (ortholog) NW_004955573 315764 327833 + 102019449 AGCD01074974;GBDF01131942;XM_005413713;XM_005413714 XP_005413770;XP_005413771 MODEL 9035035 protein-coding Tnfrsf13c TNF receptor superfamily member 13C INVOLVED IN B cell costimulation (ortholog); B cell homeostasis (ortholog); B cell proliferation (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Brain Injuries (ortholog); common variable immunodeficiency (ortholog); FOUND IN external side of plasma membrane (ortholog) NW_004955413 27341977 27344009 - 102026848 AGCD01014503;GBBH01166323;XM_005379376;XM_005379377;XM_013511363 XP_005379433;XP_005379434;XP_013366817 MODEL 39132770 snrna U6 U6 spliceosomal RNA 8916884 protein-coding LOC102019558 myomesin-3-like NW_004956379 652 3958 + 102019558 AGCD01079511;GBCQ01120105;GBDK01103330;XM_005415199 XP_005415256 MODEL 39132981 snrna U1 U1 spliceosomal RNA 9056275 protein-coding LOC102007683 olfactory receptor 10AG1-like NW_004955511 725892 726854 - 102007683 AGCD01066341;XM_005408209 XP_005408266 MODEL 8837595 pseudo LOC102017996 40S ribosomal protein S15 pseudogene NW_004955423 7792117 7792604 - 102017996 AGCD01023611 MODEL 8730971 protein-coding Znf467 zinc finger protein 467 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN regulation of DNA-templated transcription (ortholog); FOUND IN nucleus (ortholog) NW_004955491 4830708 4838316 - 102015322 AGCD01060464;GBCB01060707;XM_005404756;XM_005404757;XM_005404758;XM_005404760;XM_013504660;XM_013504662 XP_005404813;XP_005404814;XP_005404815;XP_005404817;XP_013360114;XP_013360116 MODEL 8741032 protein-coding Xrcc2 X-ray repair cross complementing 2 ENCODES a protein that exhibits four-way junction DNA binding (ortholog); INVOLVED IN centrosome cycle (ortholog); DNA damage response (ortholog); DNA repair (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH autistic disorder (ortholog); breast carcinoma (ortholog); Breast Neoplasms (ortholog); FOUND IN centrosome (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955491 6579443 6629410 - 102013094 AGCD01060554;AGCD01060555;AGCD01060556;AGCD01060557;GBDF01185427;XM_005404847;XM_005404851;XM_013504663;XR_001231241;XR_001231242 XP_005404904;XP_005404908;XP_013360117 MODEL 39132771 snrna U6 U6 spliceosomal RNA 39132983 snrna U1 U1 spliceosomal RNA 8769455 pseudo LOC102028774 interferon regulatory factor 8 pseudogene NW_004955505 3769289 3785419 + 102028774 AGCD01065056;AGCD01065057 MODEL 39132984 snrna U1 U1 spliceosomal RNA 39132772 snrna U6 U6 spliceosomal RNA 8814674 pseudo LOC102025093 zinc finger protein 23-like NW_004955460 9964512 9970986 - 102025093 AGCD01048565 MODEL 8837703 protein-coding Saraf store-operated calcium entry associated regulatory factor INVOLVED IN regulation of store-operated calcium entry (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog) NW_004955463 6549495 6567589 - 102023238 AGCD01049684;GBDK01014827;XM_005398364 XP_005398421 MODEL 8733194 pseudo LOC102023731 nascent polypeptide-associated complex subunit alpha pseudogene NW_004955433 11130839 11131964 + 102023731 AGCD01031649 MODEL 8969955 pseudo LOC102005910 nicotinamide phosphoribosyltransferase-like NW_004955463 5062434 5074910 - 102005910 AGCD01049628;AGCD01049629 MODEL 8857389 protein-coding Sdk2 sidekick cell adhesion molecule 2 INVOLVED IN camera-type eye photoreceptor cell differentiation (ortholog); homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); retina layer formation (ortholog); FOUND IN synapse (ortholog) NW_004955553 353190 614806 - 102003494 AGCD01072855;AGCD01072856;AGCD01072857;AGCD01072858;AGCD01072859;AGCD01072860;GBDJ01299393;GBDK01096005;XM_013508659 XP_013364113 MODEL 8833974 pseudo LOC102018329 plakophilin-4 pseudogene NW_004955537 2756117 2758521 - 102018329 AGCD01070938 MODEL 8802539 pseudo LOC102027098 histone RNA hairpin-binding protein-like NW_004955430 1229571 1244381 + 102027098 AGCD01029118 MODEL 8987856 protein-coding LOC102024665 uncharacterized LOC102024665 NW_004955470 9908407 9918428 - 102024665 AGCD01052847;GBCQ01154180;XM_005400776;XM_005400777;XR_001237037;XR_001237038;XR_001237039;XR_263482;XR_263483;XR_263485;XR_263486;XR_263487 XP_005400833;XP_005400834 MODEL 8738533 protein-coding Blvrb biliverdin reductase B ENCODES a protein that exhibits biliverdin reductase [NAD(P)+] activity (ortholog); peptidyl-cysteine S-nitrosylase activity (ortholog); riboflavin reductase (NADPH) activity (ortholog); INVOLVED IN heme catabolic process (ortholog); megakaryocyte differentiation (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); ASSOCIATED WITH Carpenter syndrome 2 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); congenital hypoplastic anemia (ortholog); FOUND IN terminal bouton; cytoplasm (ortholog); cytosol (ortholog) NW_004955578 813834 834675 + 102012040 AGCD01075498;GBCE01001251;XM_005414044 XP_005414101 MODEL 10376609 ncrna LOC106149194 uncharacterized LOC106149194 NW_004955439 21067230 21067961 + 106149194 AGCD01036135;GBDF01238122;XR_001235197 MODEL 9020286 pseudo LOC102023735 integrator complex subunit 3 pseudogene NW_004955435 14660136 14662402 - 102023735 AGCD01033246 MODEL 9065668 pseudo LOC102012344 protein AMN1 homolog pseudogene NW_004955505 4070700 4071337 + 102012344 AGCD01065083;XR_264308 MODEL 9043617 pseudo LOC102003347 ras-related protein Rab-5A pseudogene NW_004955419 16896961 16899862 + 102003347 AGCD01020131;AGCD01020132;AGCD01020133 MODEL 9055067 protein-coding Sdr16c5 short chain dehydrogenase/reductase family 16C member 5 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); DNA-binding transcription factor binding (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN keratinocyte proliferation (ortholog); negative regulation of gene expression, epigenetic (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN chromatin (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955454 15339353 15349180 - 102013796 AGCD01045492;GBDF01082585;XM_005396088 XP_005396145 MODEL 8865107 pseudo LOC102017997 RING finger and CHY zinc finger domain-containing protein 1 pseudogene NW_004955495 7385816 7387491 - 102017997 AGCD01062132 MODEL 151707887 mirna MIR770 microRNA 770 9011573 ncrna LOC102003096 uncharacterized LOC102003096 NW_004955458 14817424 14818448 + 102003096 AGCD01047848;GBDF01118725;XR_262998 MODEL 9041590 protein-coding LOC102005911 gamma-aminobutyric acid receptor subunit rho-2 NW_004955411 16026663 16070295 - 102005911 AGCD01011964;GBDK01413093;XM_005377748 XP_005377805 MODEL 8705061 ncrna LOC102009225 uncharacterized LOC102009225 NW_004955549 375942 379270 + 102009225 AGCD01072423;GBDF01288013;XR_264913 MODEL 8904727 protein-coding LOC102021360 heat shock transcription factor, Y-linked-like NW_004955494 8274458 8275841 - 102021360 AGCD01061582;GBDF01086027;XM_005405513 XP_005405570 MODEL 8766398 protein-coding Tex55 testis expressed 55 FOUND IN nucleus (ortholog); sperm flagellum (ortholog) NW_004955427 18905578 18929842 + 102014588 AGCD01027354;AGCD01027355;AGCD01027356;GBDF01049904;XM_005386429;XM_005386430;XM_005386431;XM_005386432;XM_005386433 XP_005386486;XP_005386487;XP_005386488;XP_005386489;XP_005386490 MODEL 8913722 protein-coding LOC102028779 olfactory receptor 5AK2-like NW_004955511 2166562 2167491 + 102028779 AGCD01066394;XM_005408252 XP_005408309 MODEL 8752923 pseudo LOC102009226 40S ribosomal protein S13 pseudogene NW_004955550 1911159 1911637 - 102009226 AGCD01072597 MODEL 8716564 ncrna LOC102005912 uncharacterized LOC102005912 NW_004955412 3097642 3103353 - 102005912 AGCD01012565;GBDF01016512;XR_001232865;XR_001232866;XR_001232867 MODEL 8831291 pseudo LOC102007353 60S ribosomal protein L31 pseudogene NW_004955426 12943982 12944411 + 102007353 AGCD01026352 MODEL 8909158 protein-coding Lrcol1 leucine rich colipase like 1 ASSOCIATED WITH colorectal cancer (ortholog) NW_004955482 429882 431693 + 102021660 AGCD01057172;GBDF01213728;XM_005402958 XP_005403015 MODEL 8900997 protein-coding Sardh sarcosine dehydrogenase ENCODES a protein that exhibits flavin adenine dinucleotide binding (ortholog); folic acid binding (ortholog); sarcosine dehydrogenase activity (ortholog); INVOLVED IN choline catabolic process (ortholog); glycine biosynthetic process (ortholog); tetrahydrofolate interconversion (ortholog); PARTICIPATES IN choline metabolic pathway; dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955513 2933918 2975645 - 102021472 AGCD01066892;GBBH01214329;XM_005408456;XM_013506717 XP_005408513;XP_013362171 MODEL 8786841 pseudo LOC102028785 calmodulin-like NW_004955432 11500456 11500892 + 102028785 AGCD01030949 MODEL 9030127 protein-coding LOC102019560 uncharacterized LOC102019560 NW_004955403 51588408 51613490 - 102019560 AGCD01002995;AGCD01002996;GBDF01277743;XM_013514373;XM_013514376;XM_013514377;XM_013514383;XM_013514388;XM_013514389 XP_013369827;XP_013369830;XP_013369831;XP_013369837;XP_013369842;XP_013369843 MODEL 8768272 ncrna LOC102005913 uncharacterized LOC102005913 NW_004955465 7025399 7028146 - 102005913 AGCD01050450;GBCQ01175139;XR_001236763;XR_263247 MODEL 9008329 pseudo LOC102026042 uncharacterized protein C3orf26 homolog NW_004955436 2931930 2958614 - 102026042 AGCD01033615 MODEL 8756803 protein-coding LOC102010001 seminal vesicle protein SVP-2-like NW_004955445 12108842 12114494 - 102010001 AGCD01039738;GBDK01186241;XM_005392441 XP_005392498 MODEL 9028639 protein-coding Gpr61 G protein-coupled receptor 61 ENCODES a protein that exhibits arrestin family protein binding (ortholog); INVOLVED IN ligand-independent adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH autistic disorder (ortholog); hereditary spastic paraplegia 63 (ortholog); FOUND IN endosome (ortholog); plasma membrane (ortholog); receptor complex (ortholog) NW_004955435 12929709 12961755 + 102003581 AGCD01033174;AGCD01033175;AGCD01033176;GBBH01078341;XM_005388870;XR_001234859 XP_005388927 MODEL 8700733 protein-coding LOC102022645 25-hydroxycholesterol 7-alpha-hydroxylase INVOLVED IN B cell chemotaxis (ortholog); bile acid biosynthetic process (ortholog); circadian rhythm (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH adenocarcinoma (ortholog); cholestasis (ortholog); congenital bile acid synthesis defect (ortholog) NW_004955444 14274818 14446068 + 102022645 AGCD01039118;AGCD01039119;AGCD01039120;AGCD01039121;AGCD01039122;GBBH01005355;GBCQ01011879;XM_013518189 XP_013373643 MODEL 39132652 snrna U6 U6 spliceosomal RNA 8812794 protein-coding Blzf1 basic leucine zipper nuclear factor 1 ENCODES a protein that exhibits enzyme binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN Golgi organization (ortholog); Golgi to plasma membrane protein transport (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); gastrointestinal stromal tumor (ortholog); hepatocellular carcinoma (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); nucleoplasm (ortholog) NW_004955462 7856650 7879659 - 102015699 AGCD01049309;GBDI01293361;XM_005398201;XM_005398202;XM_013521407;XM_013521408;XM_013521409 XP_005398258;XP_005398259;XP_013376861;XP_013376862;XP_013376863 MODEL 8954511 protein-coding Shank1 SH3 and multiple ankyrin repeat domains 1 ENCODES a protein that exhibits ankyrin repeat binding (ortholog); G protein-coupled receptor binding (ortholog); identical protein binding (ortholog); INVOLVED IN adult behavior (ortholog); associative learning (ortholog); dendritic spine morphogenesis (ortholog); ASSOCIATED WITH anxiety disorder (ortholog); autistic disorder (ortholog); developmental coordination disorder (ortholog); FOUND IN dendrite (ortholog); dendritic spine (ortholog); excitatory synapse (ortholog) NW_004955559 522466 566275 + 102015463 AGCD01073591;AGCD01073592;AGCD01073593;GBCQ01015314;XM_013508943 XP_013364397 MODEL 8992610 pseudo LOC102018000 DCN1-like protein 4 NW_004955424 950236 952921 + 102018000 AGCD01024225 MODEL 8984713 ncrna LOC102013534 uncharacterized LOC102013534 NW_004955434 16255649 16273655 - 102013534 AGCD01032521;AGCD01032522;AGCD01032523;AGCD01032524;GBDF01288452;XR_261620 MODEL 10199362 ncrna LOC106146931 uncharacterized LOC106146931 NW_004955505 4077534 4081101 + 106146931 AGCD01065084;AGCD01065085;GBDF01288398;XR_001231577 MODEL 39132985 snrna U1 U1 spliceosomal RNA 8751583 ncrna LOC102003099 uncharacterized LOC102003099 NW_004955462 10959270 10994353 - 102003099 AGCD01049379;AGCD01049380;GBDF01082820;XR_001236594;XR_263124;XR_263125;XR_263126 MODEL 8827418 ncrna LOC102021362 uncharacterized LOC102021362 NW_004955423 24524994 24528461 + 102021362 AGCD01024036;GBCB01042350;XR_260993 MODEL 10390703 ncrna LOC106150036 uncharacterized LOC106150036 NW_004955406 20000843 20002443 - 106150036 AGCD01006095;GBDF01145012;XR_001236588 MODEL 9037717 protein-coding LOC102015326 zinc finger protein 317 NW_004955495 265957 274463 + 102015326 AGCD01061616;AGCD01061617;GBDF01253179;XM_005405549 XP_005405606 MODEL 8885517 protein-coding LOC102009229 kallikrein-4-like NW_004955558 1932972 1936783 + 102009229 AGCD01073488;GBDF01079517;XM_005412753 XP_005412810 MODEL 8740501 protein-coding Bmal1 basic helix-loop-helix ARNT like 1 ENCODES a protein that exhibits aryl hydrocarbon receptor binding (ortholog); bHLH transcription factor binding (ortholog); DNA binding (ortholog); INVOLVED IN autophagy (ortholog); circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); alcohol withdrawal syndrome (ortholog); antidepressant type abuse (ortholog); FOUND IN chromatoid body (ortholog); CLOCK-BMAL transcription complex (ortholog); cytoplasm (ortholog) NW_004955414 28652663 28748360 + 102018716 AGCD01015682;AGCD01015683;AGCD01015684;AGCD01015685;GBDF01194319;XM_005380316;XM_005380317;XM_005380319;XM_005380321;XM_013511990;XM_013511991 XP_005380373;XP_005380374;XP_005380376;XP_005380378;XP_013367444;XP_013367445 MODEL 8700387 protein-coding Dgkz diacylglycerol kinase zeta ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); enzyme inhibitor activity (ortholog); kinase activity (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); glycerolipid metabolic process (ortholog); lipid phosphorylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIc (ortholog); Developmental Disabilities (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); lamellipodium (ortholog) NW_004955422 1658237 1687000 - 102009511 AGCD01022468;AGCD01022469;GBDI01006776;XM_005384031;XM_005384033;XM_005384035;XM_005384038;XM_013514024 XP_005384088;XP_005384090;XP_005384092;XP_005384095;XP_013369478 MODEL 8904498 ncrna LOC102006222 uncharacterized LOC102006222 NW_004955461 4118997 4141681 + 102006222 AGCD01048858;AGCD01048859;AGCD01048860;XR_263079 MODEL 8834264 protein-coding LOC102003349 uncharacterized LOC102003349 NW_004955420 23430746 23448623 - 102003349 AGCD01021246;AGCD01021247;AGCD01021248;GBDJ01304436;XM_005383606 XP_005383663 MODEL 8818665 pseudo LOC102012345 coiled-coil domain-containing protein 169-like NW_004955427 322526 326614 + 102012345 AGCD01026827 MODEL 10300371 protein-coding LOC106150037 translation initiation factor IF-2-like NW_004955462 390298 391074 + 106150037 AGCD01049077;GBBH01144866;XM_013521357 XP_013376811 MODEL 9001145 protein-coding Vps29 VPS29 retromer complex component INVOLVED IN endocytic recycling (ortholog); regulation of autophagy (ortholog); PARTICIPATES IN retromer-mediated pathway; FOUND IN cytosol (ortholog); endosome (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955482 7397123 7405593 - 102024463 AGCD01057466;GBDK01083384;XM_005403157;XM_005403158 XP_005403214;XP_005403215 MODEL 8774516 ncrna LOC102010003 uncharacterized LOC102010003 NW_004955447 16623757 16625250 + 102010003 AGCD01041095;GBDF01280990;XR_262438 MODEL 39132773 snrna U6 U6 spliceosomal RNA 8892929 ncrna LOC102006226 uncharacterized LOC102006226 NW_004955412 3986877 4028160 - 102006226 AGCD01012589;AGCD01012590;GBDF01111005;XR_259969 MODEL 8944601 pseudo LOC102012346 protein FAM184A pseudogene NW_004955428 4406203 4408237 + 102012346 AGCD01027690 MODEL 8940869 ncrna LOC102017092 uncharacterized LOC102017092 NW_004955453 8429815 8482589 + 102017092 AGCD01044762;AGCD01044763;AGCD01044764;GBDF01017008;XR_001236138;XR_262721 MODEL 8737414 ncrna LOC102018002 uncharacterized LOC102018002 NW_004955425 14697359 14703469 + 102018002 AGCD01025567;GBDF01279132;XR_261143 MODEL 8892583 protein-coding LOC102025094 ubiquitin carboxyl-terminal hydrolase 42 NW_004955460 13645785 13690072 - 102025094 AGCD01048713;AGCD01048714;AGCD01048715;AGCD01048716;AGCD01048717;AGCD01048718;GBDI01136910;GBDJ01280509;XM_013521210 XP_013376664 MODEL 8713647 pseudo LOC102022991 opioid growth factor receptor-like protein 1 pseudogene NW_004955897 13719 14864 - 102022991 AGCD01078610 MODEL 9040074 protein-coding LOC102024666 uncharacterized LOC102024666 NW_004955471 7974019 7985244 - 102024666 AGCD01053169;XM_013522866 XP_013378320 MODEL 10355885 ncrna LOC106146932 uncharacterized LOC106146932 NW_004955506 4244448 4245977 + 106146932 AGCD01065330;GBCE01162485;XR_001231578 MODEL 9047211 pseudo LOC102003102 HAUS augmin-like complex subunit 8 NW_004955464 11500987 11501958 - 102003102 AGCD01050155 MODEL 10226346 ncrna LOC106149195 uncharacterized LOC106149195 NW_004955439 21194771 21199718 + 106149195 AGCD01036146;GBDK01366287;XR_001235198;XR_001235199;XR_001235200 MODEL 8731628 pseudo LOC102018003 ubiquitin-conjugating enzyme E2 C pseudogene NW_004955500 8246022 8246543 - 102018003 AGCD01063985 MODEL 8934762 protein-coding Xrcc3 X-ray repair cross complementing 3 ENCODES a protein that exhibits crossover junction DNA endonuclease activity (ortholog); four-way junction DNA binding (ortholog); INVOLVED IN DNA repair (ortholog); double-strand break repair via homologous recombination (ortholog); interstrand cross-link repair (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH basal cell carcinoma (ortholog); brain glioma (ortholog); breast cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955538 2499297 2511898 - 102014168 AGCD01071127;AGCD01071128;GBDI01054433;XM_013507843;XM_013507844;XM_013507845;XM_013507846;XM_013507847;XM_013507848;XM_013507849;XM_013507850 XP_013363297;XP_013363298;XP_013363299;XP_013363300;XP_013363301;XP_013363302;XP_013363303;XP_013363304 MODEL 9035084 pseudo LOC102028786 uncharacterized LOC102028786 NW_004955517 721323 792456 + 102028786 AGCD01067580;AGCD01067581 MODEL 8940012 protein-coding LOC102003103 uncharacterized LOC102003103 NW_004955412 1132411 1136987 + 102003103 AGCD01012507;GBDF01116497;XM_005377954 XP_005378011 MODEL 8986734 protein-coding Slc15a4 solute carrier family 15 member 4 ENCODES a protein that exhibits dipeptide transmembrane transporter activity (ortholog); L-histidine transmembrane transporter activity (ortholog); peptide:proton symporter activity (ortholog); INVOLVED IN dipeptide import across plasma membrane (ortholog); histidine transport (ortholog); L-histidine transmembrane export from vacuole (ortholog); ASSOCIATED WITH systemic lupus erythematosus (ortholog); FOUND IN early endosome membrane (ortholog); endolysosome membrane (ortholog); endosome membrane (ortholog) NW_004955482 2327137 2343980 + 102006458 AGCD01057244;GBBH01117824;XM_013503714 XP_013359168 MODEL 9004030 ncrna LOC102018004 uncharacterized LOC102018004 NW_004955426 14561873 14580787 + 102018004 AGCD01026394;GBDF01280622;XR_261196 MODEL 8893335 protein-coding LOC102024046 trace amine-associated receptor 3-like NW_004955436 13181451 13182480 - 102024046 AGCD01033855;XM_013516587 XP_013372041 MODEL 9049819 protein-coding Dglucy D-glutamate cyclase ENCODES a protein that exhibits D-glutamate cyclase activity (ortholog); INVOLVED IN glutamate metabolic process (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955438 13440883 13554969 + 102015449 AGCD01035286;AGCD01035287;AGCD01035288;AGCD01035289;AGCD01035290;AGCD01035291;AGCD01035292;AGCD01081645;GBCQ01129162;XM_013517220;XM_013517221;XM_013517222 XP_013372674;XP_013372675;XP_013372676 MODEL 10108204 protein-coding LOC106150038 uncharacterized protein C10orf68-like NW_004955462 4646881 4690098 - 106150038 AGCD01049237;AGCD01049238;AGCD01049239;GBDF01049445;XM_013521359 XP_013376813 MODEL 9038088 protein-coding LOC102007688 spermatogenesis-associated protein 31E1-like NW_004955515 2514202 2517200 - 102007688 AGCD01067256;GBDK01098218;XM_005408922;XM_013506865 XP_005408979;XP_013362319 MODEL 8992477 protein-coding Usp20 ubiquitin specific peptidase 20 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); G protein-coupled receptor binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of autophagy (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN centrosome (ortholog) NW_004955513 43601 70714 + 102013437 AGCD01066810;AGCD01066811;AGCD01066812;GBCE01117325;GBDK01240040;XM_005408333;XM_005408337;XM_013506663;XM_013506664;XM_013506665;XM_013506666 XP_005408390;XP_005408394;XP_013362117;XP_013362118;XP_013362119;XP_013362120 MODEL 8819136 ncrna LOC102027099 uncharacterized LOC102027099 NW_004955431 3082267 3095252 - 102027099 AGCD01029946;GBDF01014351;XR_001234578 MODEL 8985272 protein-coding LOC102003104 uncharacterized LOC102003104 NW_004955412 13999049 14010479 - 102003104 AGCD01012849;AGCD01012850;GBCB01025463;XM_013510960;XM_013510961;XM_013510962;XM_013510963;XM_013510964;XM_013510965;XM_013510966;XR_001232853;XR_001232854 XP_013366414;XP_013366415;XP_013366416;XP_013366417;XP_013366418;XP_013366419;XP_013366420 MODEL 8987484 protein-coding Slc15a5 solute carrier family 15 member 5 NW_004955413 12832193 12924836 - 102007323 AGCD01014001;AGCD01014002;AGCD01014003;AGCD01014004;XM_005379024 XP_005379081 MODEL 8805409 protein-coding Znf469 zinc finger protein 469 INVOLVED IN cell-matrix adhesion (ortholog); collagen fibril organization (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 4 (ortholog); Brittle Cornea Syndrome (ortholog) NW_004955541 2404549 2438183 + 102025175 AGCD01071409;AGCD01071410;AGCD01071411;GBDF01170735;XM_013507939 XP_013363393 MODEL 9037669 protein-coding LOC102012347 uncharacterized LOC102012347 NW_004955508 3322424 3325128 + 102012347 AGCD01065806;GBCQ01193228;XM_005407736 XP_005407793 MODEL 8908613 protein-coding Erg28 ergosterol biosynthesis 28 homolog ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN transport vesicle (ortholog) NW_004955612 99107 109679 - 102022872 AGCD01077180;GBDK01014402;XM_005414961;XM_005414962 XP_005415018;XP_005415019 MODEL 8734363 pseudo LOC102015328 guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 pseudogene NW_004955425 22681002 22682303 + 102015328 AGCD01025827;XM_005386021 MODEL 9023745 pseudo LOC102022996 calreticulin pseudogene NW_004955404 25701933 25702878 + 102022996 AGCD01003861 MODEL 8790397 pseudo LOC102005914 shugoshin-like 1 pseudogene NW_004955465 13332971 13334196 - 102005914 AGCD01050600 MODEL 8745190 ncrna LOC102026043 uncharacterized LOC102026043 NW_004955540 2042878 2048223 - 102026043 AGCD01071309;GBDK01150011;XR_264823 MODEL 8921552 protein-coding LOC102024667 mas-related G-protein coupled receptor member X1-like NW_004955414 33585900 33586814 - 102024667 AGCD01015813;XM_005380536 XP_005380593 MODEL 8919443 protein-coding Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 ENCODES a protein that exhibits GTPase binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to nutrient levels (ortholog); cholesterol homeostasis (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); cerebral folate receptor alpha deficiency (ortholog); intellectual disability (ortholog); FOUND IN FNIP-folliculin RagC/D GAP (ortholog); late endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955414 19228615 19235523 + 102029849 AGCD01015308;GBBH01062278;XM_005380006 XP_005380063 MODEL 8836932 pseudo LOC102015330 bisphosphoglycerate mutase-like NW_004955501 6853024 6853772 + 102015330 AGCD01064202 MODEL 39131564 protein-coding TNFRSF13C TNF receptor superfamily member 13C 8901153 protein-coding LOC102003352 inositol 1,4,5-trisphosphate receptor type 1 NW_004955421 8603264 8928051 - 102003352 AGCD01021821;AGCD01021822;AGCD01021823;AGCD01021824;AGCD01021825;AGCD01021826;GBCE01055382;GBDF01285678;XM_013513709;XM_013513710;XM_013513711;XM_013513712;XM_013513713;XM_013513714;XM_013513715 XP_013369163;XP_013369164;XP_013369165;XP_013369166;XP_013369167;XP_013369168;XP_013369169 MODEL 8788622 protein-coding LOC102018332 uncharacterized LOC102018332 NW_004955437 7937031 7944587 - 102018332 AGCD01034476;GBCB01119722;XM_013516734 XP_013372188 MODEL 39132988 snrna U1 U1 spliceosomal RNA 8738558 protein-coding Tex9 testis expressed 9 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); visceral heterotaxy 9 (ortholog); FOUND IN centriolar satellite (ortholog) NW_004955450 17885148 17942136 - 102015795 AGCD01042891;AGCD01042892;AGCD01042893;AGCD01042894;AGCD01042895;AGCD01042896;GBBH01211747;GBDI01295788;XM_005393900 XP_005393957 MODEL 9031308 protein-coding Shank2 SH3 and multiple ankyrin repeat domains 2 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); SH3 domain binding (ortholog); structural constituent of postsynaptic density (ortholog); INVOLVED IN adult behavior (ortholog); adult locomotory behavior (ortholog); associative learning (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); bipolar disorder (ortholog); FOUND IN apical plasma membrane (ortholog); asymmetric synapse (ortholog); brush border membrane (ortholog) NW_004955422 15295800 15818067 + 102018504 AGCD01022876;AGCD01022877;AGCD01022878;AGCD01022879;AGCD01022880;AGCD01022881;AGCD01022882;GBBH01227949;XM_013514155;XM_013514156;XM_013514157 XP_013369609;XP_013369610;XP_013369611 MODEL 8720264 protein-coding LOC102026044 A-kinase anchor protein 17A-like NW_004955439 8813335 8830470 - 102026044 AGCD01035813;GBDF01082647;XM_005390568;XM_013517409 XP_005390625;XP_013372863 MODEL 8998908 protein-coding Idh3b isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta ENCODES a protein that exhibits enzyme activator activity (ortholog); INVOLVED IN tricarboxylic acid cycle (ortholog); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; mitochondrial complex II deficiency pathway; ASSOCIATED WITH Disease Progression (ortholog); fundus dystrophy (ortholog); Huntington's disease-like 1 (ortholog); FOUND IN isocitrate dehydrogenase complex (NAD+) (ortholog); mitochondrion (ortholog) NW_004955415 13642804 13649023 - 102016262 AGCD01016263;GBCB01001615;XM_013512289;XM_013512290;XR_001233226;XR_001233227 XP_013367743;XP_013367744 MODEL 8726016 pseudo LOC102007689 DNA-3-methyladenine glycosylase pseudogene NW_004955516 1140332 1141187 + 102007689 AGCD01067413 MODEL 8873602 protein-coding LOC102007356 olfactory receptor 13G1-like NW_004955507 6477447 6478391 - 102007356 AGCD01065718;XM_005407724 XP_005407781 MODEL 8828732 pseudo LOC102009232 phosphorylated adapter RNA export protein pseudogene NW_004955444 566028 567654 + 102009232 AGCD01038678 MODEL 8778362 protein-coding Neu2 neuraminidase 2 ENCODES a protein that exhibits exo-alpha-sialidase activity (ortholog); INVOLVED IN ganglioside catabolic process (ortholog); glycoprotein catabolic process (ortholog); oligosaccharide catabolic process (ortholog); ASSOCIATED WITH Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog); FOUND IN catalytic complex (ortholog); cytosol (ortholog) NW_004955453 3054626 3063070 - 102012276 AGCD01044648;XM_005395361;XM_013519769;XM_013519770;XM_013519771 XP_005395418;XP_013375223;XP_013375224;XP_013375225 MODEL 9044648 ncrna LOC102019563 uncharacterized LOC102019563 NW_004955405 18550190 18557677 + 102019563 AGCD01005021;GBCE01080090;XR_259388 MODEL 8799639 protein-coding LOC102003108 H/ACA ribonucleoprotein complex subunit 1-like NW_004955413 7012350 7019221 - 102003108 AGCD01013789;GBDI01034364;XM_005378922;XM_005378923 XP_005378979;XP_005378980 MODEL 39133703 mirna MIR802 microRNA 802 8760097 protein-coding Bmerb1 bMERB domain containing 1 INVOLVED IN cell motility involved in cerebral cortex radial glia guided migration (ortholog); microtubule depolymerization (ortholog); negative regulation of cell motility involved in cerebral cortex radial glia guided migration (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); epilepsy (ortholog); FOUND IN microtubule cytoskeleton (ortholog) NW_004955442 317334 442514 + 102022429 AGCD01037419;AGCD01037420;AGCD01037421;AGCD01037422;AGCD01037423;AGCD01037424;AGCD01037425;GBDF01078842;XM_005391062;XM_005391063 XP_005391119;XP_005391120 MODEL 10164058 protein-coding Gpr62 G protein-coupled receptor 62 ENCODES a protein that exhibits arrestin family protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); ligand-independent adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); positive regulation of calcium-mediated signaling (ortholog); FOUND IN endosome (ortholog); plasma membrane (ortholog); receptor complex (ortholog) NW_004955532 3602642 3603230 + 106147238 AGCD01070288;GBCB01089709;XM_013507618 XP_013363072 MODEL 8707178 protein-coding Slc16a1 solute carrier family 16 member 1 ENCODES a protein that exhibits carboxylic acid transmembrane transporter activity (ortholog); identical protein binding (ortholog); lactate transmembrane transporter activity (ortholog); INVOLVED IN behavioral response to nutrient (ortholog); carboxylic acid transmembrane transport (ortholog); centrosome cycle (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autism spectrum disorder (ortholog); Colonic Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955435 16334382 16361737 - 102007930 AGCD01033319;GBDF01006604;XM_005388972;XM_005388973;XM_005388975 XP_005389029;XP_005389030;XP_005389032 MODEL 9053410 ncrna LOC102007690 uncharacterized LOC102007690 NW_004955435 16245726 16250388 - 102007690 AGCD01033304;GBDF01049547;XR_261703 MODEL 39133649 mirna MIR873 microRNA 873 9049138 protein-coding Xrcc4 X-ray repair cross complementing 4 ENCODES a protein that exhibits 3' overhang single-stranded DNA endodeoxyribonuclease activity (ortholog); DNA binding (ortholog); enzyme binding (ortholog); INVOLVED IN base-excision repair (ortholog); cellular response to lithium ion (ortholog); central nervous system development (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH Chromosome Aberrations (ortholog); genetic disease (ortholog); isolated growth hormone deficiency type IA (ortholog); FOUND IN chromosome, telomeric region (ortholog); condensed chromosome (ortholog); cytoplasm (ortholog) NW_004955418 27174510 27426245 - 102010162 AGCD01019404;AGCD01019405;AGCD01019406;AGCD01019407;AGCD01019408;GBCE01069514;XM_005382305;XM_005382306 XP_005382362;XP_005382363 MODEL 8893304 pseudo LOC102022999 U1 small nuclear ribonucleoprotein C pseudogene NW_004955454 3602309 3602766 - 102022999 AGCD01045094 MODEL 9026807 protein-coding LOC102005915 translation initiation factor IF-2-like NW_004955465 13253449 13255976 - 102005915 AGCD01050595;GBDJ01330279;XM_005399010 XP_005399067 MODEL 8902229 ncrna LOC102006227 uncharacterized LOC102006227 NW_004955465 7168095 7203880 + 102006227 AGCD01050456;AGCD01050457;GBBH01168662;XR_263249;XR_263250 MODEL 8751125 ncrna LOC102017094 uncharacterized LOC102017094 NW_004955454 617327 631691 + 102017094 AGCD01044959;XR_001236224;XR_262762 MODEL 8797193 pseudo LOC102024669 cell division control protein 42 homolog pseudogene NW_004955415 3660284 3665216 - 102024669 AGCD01015949;XR_260341 MODEL 39132990 snrna U1 U1 spliceosomal RNA 9022618 protein-coding LOC102003354 phylloquinone omega-hydroxylase CYP4F2-like NW_004955495 7648769 7675912 - 102003354 AGCD01062155;AGCD01062156;XM_005406061 XP_005406118 MODEL 8894547 protein-coding Dguok deoxyguanosine kinase ENCODES a protein that exhibits deoxyguanosine kinase activity (ortholog); deoxynucleoside kinase activity (ortholog); INVOLVED IN dAMP salvage (ortholog); dGTP metabolic process (ortholog); mitochondrial ATP synthesis coupled electron transport (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 4 (ortholog); Cognitive Dysfunction (ortholog); congenital disorder of glycosylation type IIb (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955424 11739904 11773884 - 102007350 AGCD01024573;AGCD01024574;GBDI01313341;XM_005385533;XM_005385534 XP_005385590;XP_005385591 MODEL 8891018 protein-coding Sdr39u1 short chain dehydrogenase/reductase family 39U member 1 ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Specific Granule Deficiency (ortholog); FOUND IN mitochondrion (ortholog) NW_004955409 35867944 35870847 + 102026193 AGCD01010435;GBDF01083948;XM_005377000;XM_013510391 XP_005377057;XP_013365845 MODEL 8930147 protein-coding Shank3 SH3 and multiple ankyrin repeat domains 3 ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); identical protein binding (ortholog); ionotropic glutamate receptor binding (ortholog); INVOLVED IN adult behavior (ortholog); AMPA glutamate receptor clustering (ortholog); associative learning (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN ciliary membrane (ortholog); glutamatergic synapse (ortholog); neuron projection (ortholog) NW_004955413 33660025 33714649 + 102015943 AGCD01014686;AGCD01014687;AGCD01014688;GBDI01163328;GBDK01181044;XM_005379674 XP_005379731 MODEL 9023157 pseudo LOC102026054 asparagine synthetase domain-containing protein 1 pseudogene NW_004955447 652287 654813 + 102026054 AGCD01040478 MODEL 8806576 protein-coding LOC102012348 ankyrin repeat domain-containing protein 26-like NW_004955429 6598602 6603032 - 102012348 AGCD01028554;XM_013515351 XP_013370805 MODEL 8822781 protein-coding Idh3g isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma ENCODES a protein that exhibits enzyme activator activity (ortholog); isocitrate dehydrogenase (NAD+) activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN isocitrate metabolic process (ortholog); tricarboxylic acid cycle (ortholog); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; mitochondrial complex II deficiency pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN isocitrate dehydrogenase complex (NAD+) (ortholog); mitochondrion (ortholog); nucleolus (ortholog) NW_004955580 500712 507512 - 102017929 AGCD01075607;GBBH01060315;XM_005414148;XM_013509712 XP_005414205;XP_013365166 MODEL 9050885 protein-coding Spice1 spindle and centriole associated protein 1 INVOLVED IN metaphase chromosome alignment (ortholog); mitotic spindle assembly (ortholog); regulation of centriole replication (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955427 13584841 13626656 - 102003893 AGCD01027253;GBDK01324651;XM_005386399;XM_013515113;XM_013515114 XP_005386456;XP_013370567;XP_013370568 MODEL 8717643 protein-coding Ergic1 endoplasmic reticulum-golgi intermediate compartment 1 INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); atrial heart septal defect 7 (ortholog); Atrial Septal Defect with Atrioventricular Conduction Defects (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955408 25540149 25644108 + 102027272 AGCD01008647;GBCB01057939;XM_005376342;XM_013509355;XM_013509357;XM_013509359 XP_005376399;XP_013364809;XP_013364811;XP_013364813 MODEL 8742778 protein-coding Vps33a VPS33A core subunit of CORVET and HOPS complexes ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); endosome to lysosome transport (ortholog); lysosome localization (ortholog); ASSOCIATED WITH Hermansky-Pudlak syndrome (ortholog); Mucopolysaccharidosis-Plus Syndrome (ortholog); short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN AP-3 adaptor complex (ortholog); autophagosome (ortholog); clathrin complex (ortholog) NW_004955482 6333282 6352369 + 102006776 AGCD01057386;GBDK01188264;XM_005403095;XM_005403096 XP_005403152;XP_005403153 MODEL 8967496 ncrna LOC102012357 uncharacterized LOC102012357 NW_004955436 8984095 9017211 + 102012357 AGCD01033755;GBDF01158995;XR_261779;XR_261780 MODEL 9018174 protein-coding Lamtor2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); fibroblast migration (ortholog); positive regulation of MAPK cascade (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN FNIP-folliculin RagC/D GAP (ortholog); late endosome (ortholog); lysosomal membrane (ortholog) NW_004955545 2237506 2242070 + 102018226 AGCD01071891;GBCE01030998;XM_005411645 XP_005411702 MODEL 8888362 pseudo LOC102021363 olfactory receptor 7D4-like NW_004955495 413973 415050 + 102021363 AGCD01061628;XM_005406119 MODEL 39133728 mirna MIR874 microRNA 874 9042124 ncrna LOC102023736 uncharacterized LOC102023736 NW_004955527 1637263 1641802 + 102023736 AGCD01069411;GBDF01095954;XR_001231974 MODEL 8726965 protein-coding Klk10 kallikrein related peptidase 10 ASSOCIATED WITH Breast Neoplasms (ortholog); ductal carcinoma in situ (ortholog); ovarian cancer (ortholog) NW_004955558 1466162 1471112 + 102023205 AGCD01073444;GBCQ01176836;XM_005412720 XP_005412777 MODEL 8729907 protein-coding Xrcc5 X-ray repair cross complementing 5 ENCODES a protein that exhibits 5'-deoxyribose-5-phosphate lyase activity (ortholog); ATP hydrolysis activity (ortholog); ATP-dependent activity, acting on DNA (ortholog); INVOLVED IN activation of innate immune response (ortholog); cellular hyperosmotic salinity response (ortholog); cellular response to fatty acid (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH Animal Disease Models (ortholog); basal cell carcinoma (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); DNA-dependent protein kinase complex (ortholog) NW_004955453 16967453 17054634 - 102024526 AGCD01044916;AGCD01044917;GBCB01075567;XM_005395688;XM_005395689 XP_005395745;XP_005395746 MODEL 8957875 protein-coding LOC102008838 V-set and immunoglobulin domain-containing protein 8 NW_004955468 11648880 11658624 - 102008838 AGCD01052136;GBDK01042318;XM_005400177;XM_005400178 XP_005400234;XP_005400235 MODEL 8840874 pseudo LOC102017099 BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 pseudogene NW_004955457 250911 251508 - 102017099 AGCD01046705 MODEL 8710522 protein-coding Tfam transcription factor A, mitochondrial ENCODES a protein that exhibits chromatin binding (ortholog); heat shock protein binding (ortholog); mitochondrial promoter sequence-specific DNA binding (ortholog); INVOLVED IN mitochondrial respiratory chain complex assembly (ortholog); mitochondrial transcription (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); Animal Disease Models (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955425 12106506 12121625 + 102009855 AGCD01025499;GBDF01004784;XM_005385914 XP_005385971 MODEL 8817908 protein-coding LOC102006228 histone H3 INVOLVED IN epigenetic regulation of gene expression (ortholog); gene expression (ortholog); nucleosome assembly (ortholog); FOUND IN nucleoplasm (ortholog); nucleosome (ortholog); nucleus (ortholog) NW_004955465 13338289 13339268 + 102006228 AGCD01050601;XM_005398948 XP_005399005 MODEL 8899441 protein-coding LOC102022646 CD209 antigen-like protein E NW_004955563 1483949 1487028 + 102022646 AGCD01074149;GBDI01067391;XM_005413153;XM_013509121 XP_005413210;XP_013364575 MODEL 39131589 mirna MIR876 microRNA 876 9046039 protein-coding Bmf Bcl2 modifying factor INVOLVED IN anoikis (ortholog); cellular response to starvation (ortholog); cellular response to UV (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN acrosomal vesicle (ortholog); actin cytoskeleton (ortholog); cytoplasm (ortholog) NW_004955416 7048654 7068917 - 102014243 AGCD01016961;GBBH01186132;XM_005381214;XM_005381215 XP_005381271;XP_005381272 MODEL 9026136 pseudo LOC102010005 39S ribosomal protein L47, mitochondrial pseudogene NW_004955449 1853430 1854383 + 102010005 AGCD01041814;XM_005393196 MODEL 8716984 protein-coding Dhcr24 24-dehydrocholesterol reductase ENCODES a protein that exhibits Delta24(24-1) sterol reductase activity (ortholog); Delta24-sterol reductase activity (ortholog); enzyme binding (ortholog); INVOLVED IN amyloid precursor protein catabolic process (ortholog); cholesterol biosynthetic process (ortholog); cholesterol biosynthetic process via desmosterol (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); autism spectrum disorder (ortholog); COVID-19 (ortholog); FOUND IN endoplasmic reticulum (ortholog); nucleus (ortholog) NW_004955464 4533928 4557893 + 102024198 AGCD01049992;GBCE01031278;XM_005398508 XP_005398565 MODEL 8950239 protein-coding LOC102018007 unconventional myosin-XVB-like NW_004955506 6612784 6644900 - 102018007 AGCD01065432;GBCE01126793;GBDI01245097;XM_005407496 XP_005407553 MODEL 8830965 protein-coding LOC102026055 olfactory receptor 2C3-like NW_004955581 767883 769067 - 102026055 AGCD01075693;XM_005414269 XP_005414326 MODEL 8960233 protein-coding LOC102024047 uncharacterized LOC102024047 NW_004955436 1581428 1589015 - 102024047 AGCD01033580;AGCD01033581;GBDF01020972;XM_013516580 XP_013372034 MODEL 8773218 ncrna LOC102015331 uncharacterized LOC102015331 NW_004955427 9210802 9219071 - 102015331 AGCD01027094;GBDF01040198;XR_261246 MODEL 8995112 protein-coding Gpr63 G protein-coupled receptor 63 FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955411 22771570 22817906 - 102019152 AGCD01012097;GBCQ01010247;XM_005377788;XM_013510888 XP_005377845;XP_013366342 MODEL 10264758 ncrna LOC106150039 uncharacterized LOC106150039 NW_004955462 9394271 9394930 + 106150039 AGCD01049338;XR_001236592 MODEL 8887735 protein-coding Tango2 transport and golgi organization 2 homolog ASSOCIATED WITH Alstrom syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955442 18036477 18074036 - 102026680 AGCD01037995;GBDF01086531;XM_005391746;XM_013517770;XM_013517771;XM_013517772;XM_013517773;XM_013517774;XM_013517775 XP_005391803;XP_013373224;XP_013373225;XP_013373226;XP_013373227;XP_013373228;XP_013373229 MODEL 8966527 pseudo LOC102010007 inaD-like protein pseudogene NW_004955402 42875359 42877029 - 102010007 AGCD01001050 MODEL 8720375 pseudo LOC102005916 COMM domain-containing protein 8 pseudogene NW_004955466 2360352 2361351 - 102005916 AGCD01050734 MODEL 8916445 protein-coding Lrfn1 leucine rich repeat and fibronectin type III domain containing 1 INVOLVED IN regulation of postsynaptic density assembly (ortholog); ASSOCIATED WITH maturity-onset diabetes of the young type 1 (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN cell surface (ortholog); postsynaptic density membrane (ortholog) NW_004955468 231164 240924 + 102025993 AGCD01051686;GBDI01025109;GBDJ01423007;XM_005399787 XP_005399844 MODEL 8775286 protein-coding Ergic2 ERGIC and golgi 2 INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog) NW_004955505 5548588 5583503 + 102015131 AGCD01065152;GBDF01112264;XM_005407138;XM_005407139;XM_005407140;XM_013505937;XM_013505938 XP_005407195;XP_005407196;XP_005407197;XP_013361391;XP_013361392 MODEL 10333411 pseudo LOC106149196 chromobox protein homolog 3 pseudogene NW_004955405 1784386 1786324 - 106149196 AGCD01004613 MODEL 10097035 ncrna LOC106146933 uncharacterized LOC106146933 NW_004955506 4636147 4640266 - 106146933 AGCD01065342;GBCB01059698;XR_001231579 MODEL 39132653 snrna U6 U6 spliceosomal RNA 8877490 protein-coding LOC102024670 ATP-binding cassette sub-family A member 8-A-like NW_004955478 3792935 3863366 + 102024670 AGCD01055831;AGCD01055832;AGCD01055833;GBCE01103327;XM_013503212;XM_013503213;XM_013503214;XM_013503215;XM_013503216 XP_013358666;XP_013358667;XP_013358668;XP_013358669;XP_013358670 MODEL 8844504 protein-coding LOC102020471 uncharacterized LOC102020471 NW_004955510 3482252 3513382 - 102020471 AGCD01066236;AGCD01066237;AGCD01066238;AGCD01066239;GBDF01177513;XM_005407930 XP_005407987 MODEL 8817270 protein-coding LOC102008841 calcyclin-binding protein-like NW_004955414 6441386 6442088 - 102008841 AGCD01014919;XM_013512070 XP_013367524 MODEL 8950715 protein-coding LOC102009234 prolactin-like NW_004955576 435369 491017 + 102009234 AGCD01075276;AGCD01075277;AGCD01075278;AGCD01075279;AGCD01075280;AGCD01075281;AGCD01075282;AGCD01075283;XM_005413946 XP_005414003 MODEL 8730729 protein-coding Tango6 transport and golgi organization 6 homolog ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); myoepithelioma (ortholog) NW_004955484 7574194 7774802 - 102007899 AGCD01058339;AGCD01058340;AGCD01058341;AGCD01058342;AGCD01058343;AGCD01058344;AGCD01058345;AGCD01058346;GBCB01086514;XM_005403579;XM_013503936 XP_005403636;XP_013359390 MODEL 8813277 protein-coding Neu3 neuraminidase 3 ENCODES a protein that exhibits alpha-sialidase activity (ortholog); exo-alpha-sialidase activity (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); ganglioside catabolic process (ortholog); negative regulation of clathrin-dependent endocytosis (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN early endosome membrane (ortholog); external side of plasma membrane (ortholog); lysosomal membrane (ortholog) NW_004955414 16783996 16798368 - 102030180 AGCD01015225;GBCE01052428;XM_005379900;XM_005379901;XM_005379902;XM_005379903;XM_005379904;XM_005379905;XM_013512071 XP_005379957;XP_005379958;XP_005379959;XP_005379960;XP_005379961;XP_005379962;XP_013367525 MODEL 9036126 protein-coding LOC102013536 uncharacterized LOC102013536 NW_004955526 4264331 4315647 - 102013536 AGCD01069364;AGCD01069365;GBDJ01399642;XM_013507356 XP_013362810 MODEL 8850755 protein-coding Ergic3 ERGIC and golgi 3 INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); positive regulation of intracellular protein transport (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); Experimental Neoplasms (ortholog); glutathione synthetase deficiency (ortholog); FOUND IN retrograde transporter complex, Golgi to ER (ortholog); transporter complex (ortholog) NW_004955422 25884138 25893237 - 102010597 AGCD01023269;GBDF01008497;XM_005384790;XM_005384791 XP_005384847;XP_005384848 MODEL 39132655 snrna U6 U6 spliceosomal RNA 39133682 mirna MIR9-1 microRNA 9-1 8856179 ncrna LOC102015334 uncharacterized LOC102015334 NW_004955511 6179748 6184490 - 102015334 AGCD01066598;GBDF01195944;XR_264437 MODEL 8889169 protein-coding Spidr scaffold protein involved in DNA repair INVOLVED IN cellular response to camptothecin (ortholog); cellular response to hydroxyurea (ortholog); cellular response to ionizing radiation (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); ovarian dysgenesis 9 (ortholog); primary ovarian insufficiency 16 (ortholog); FOUND IN nuclear chromosome (ortholog); nucleoplasm (ortholog) NW_004955454 7360144 7710077 + 102021091 AGCD01045298;AGCD01045299;AGCD01045300;AGCD01045301;AGCD01045302;GBDF01249752;XM_005396031;XM_005396032;XM_013520203;XM_013520205 XP_005396088;XP_005396089;XP_013375657;XP_013375659 MODEL 8936447 protein-coding Vps33b VPS33B late endosome and lysosome associated ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); collagen fibril organization (ortholog); collagen metabolic process (ortholog); ASSOCIATED WITH ARC syndrome (ortholog); arthrogryposis multiplex congenita (ortholog); arthrogryposis, renal dysfunction, and cholestasis 1 (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasm (ortholog); early endosome membrane (ortholog) NW_004955416 15049849 15071108 - 102018285 AGCD01017298;AGCD01017299;GBCQ01047652;XM_005381516;XM_005381517 XP_005381573;XP_005381574 MODEL 8998286 protein-coding Lamtor3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); kinase activator activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); positive regulation of MAPK cascade (ortholog); positive regulation of TOR signaling (ortholog); PARTICIPATES IN mTOR signaling pathway; FOUND IN FNIP-folliculin RagC/D GAP (ortholog); late endosome (ortholog); lysosomal membrane (ortholog) NW_004955496 7789210 7809143 + 102022618 AGCD01062385;GBDF01086384;XM_005406266;XM_013505384;XM_013505385 XP_005406323;XP_013360838;XP_013360839 MODEL 8941544 pseudo LOC102007357 transmembrane protein 168 pseudogene NW_004955511 1610996 1613016 + 102007357 AGCD01066376 MODEL 9044945 protein-coding Gpr65 G protein-coupled receptor 65 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cellular response to acidic pH (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH Leber congenital amaurosis 3 (ortholog); ulcerative colitis (ortholog); FOUND IN early endosome membrane (ortholog); late endosome membrane (ortholog); plasma membrane (ortholog) NW_004955438 10724069 10730868 + 102004423 AGCD01035216;GBDI01162205;XM_005390250 XP_005390307 MODEL 8821840 protein-coding LOC102010015 probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 NW_004955785 867 11463 + 102010015 AGCD01078339;AGCD01078340;AGCD01078341;AGCD01078342;XM_013510191 XP_013365645 MODEL 9050389 protein-coding Ppp2cb protein phosphatase 2 catalytic subunit beta ENCODES a protein that exhibits phosphoprotein phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN apoptotic mitochondrial changes (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of gene expression (ortholog); PARTICIPATES IN dopamine signaling pathway; phosphatidylinositol 3-kinase-Akt signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; FOUND IN cytoplasm (ortholog); FAR/SIN/STRIPAK complex (ortholog); protein phosphatase type 2A complex (ortholog) NW_004955463 7229717 7249490 - 102009155 AGCD01049725;GBCB01038556;XM_013521563 XP_013377017 MODEL 8918534 protein-coding LOC102019567 zinc finger protein 85-like NW_004955454 7180326 7196465 + 102019567 AGCD01045284;AGCD01045285;AGCD01045286;GBDI01206872;XM_013520198 XP_013375652 MODEL 39132774 snrna U6 U6 spliceosomal RNA 8935185 protein-coding LOC102006229 histone H2A type 1-like NW_004955465 13334742 13337254 + 102006229 AGCD01050600;AGCD01050601;XM_005399011 XP_005399068 MODEL 10216557 ncrna LOC106146934 uncharacterized LOC106146934 NW_004955506 162455 165304 - 106146934 AGCD01065216;XR_001231582 MODEL 9026546 protein-coding LOC102017102 speedy protein E4-like NW_004955460 12941371 12957203 + 102017102 AGCD01048664;GBDF01163162;XM_013521229;XR_001236524;XR_001236525;XR_001236526;XR_001236527;XR_001236528;XR_001236529;XR_001236530;XR_001236531 XP_013376683 MODEL 8947207 protein-coding Tfap2a transcription factor AP-2 alpha ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN anterior neuropore closure (ortholog); basement membrane organization (ortholog); bone morphogenesis (ortholog); ASSOCIATED WITH amblyopia (ortholog); branchiooculofacial syndrome (ortholog); branchiootorenal syndrome (ortholog); FOUND IN clathrin-coated pit (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955465 3877896 3900259 + 102019254 AGCD01050394;AGCD01050395;AGCD01050396;AGCD01050397;GBBH01228649;GBCQ01030706;XM_013521865;XM_013521866 XP_013377319;XP_013377320 MODEL 8999123 ncrna LOC102025097 uncharacterized LOC102025097 NW_004955411 5016033 5019994 + 102025097 AGCD01011593;GBDJ01318909;XR_259918 MODEL 8833754 protein-coding Idnk IDNK gluconokinase NW_004955432 3626148 3647285 - 102011033 AGCD01030672;AGCD01030673;GBDI01383927;XM_013516000;XM_013516001 XP_013371454;XP_013371455 MODEL 8720862 protein-coding Tnfrsf14 TNF receptor superfamily member 14 ENCODES a protein that exhibits cytokine binding (ortholog); receptor ligand activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN CD4-positive, alpha-beta T cell proliferation (ortholog); defense response to Gram-negative bacterium (ortholog); defense response to Gram-positive bacterium (ortholog); ASSOCIATED WITH arteriosclerosis (ortholog); Brain Injuries (ortholog); celiac disease (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955486 8670182 8684677 - 102005150 AGCD01059153;GBCE01053037;XM_005404162;XM_005404163;XM_013504242;XM_013504243;XM_013504244;XM_013504245;XM_013504246 XP_005404219;XP_005404220;XP_013359696;XP_013359697;XP_013359698;XP_013359699;XP_013359700 MODEL 39132775 snrna U6 U6 spliceosomal RNA 8983855 protein-coding LOC102008843 olfactory receptor 52N4-like NW_004955414 21721245 21722210 + 102008843 AGCD01015429;XM_005380501 XP_005380558 MODEL 8990353 pseudo LOC102023010 iron-sulfur cluster assembly 1 homolog, mitochondrial pseudogene NW_004955409 23655947 23657129 + 102023010 AGCD01010069 MODEL 8828031 protein-coding LOC102009235 signal recognition particle 19 kDa protein NW_004955449 1420800 1421601 - 102009235 AGCD01041800;XM_005393194 XP_005393251 MODEL 8933040 protein-coding Neu4 neuraminidase 4 ENCODES a protein that exhibits exo-alpha-sialidase activity (ortholog); INVOLVED IN ganglioside catabolic process (ortholog); glycoprotein catabolic process (ortholog); negative regulation of neuron projection development (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); lysosome (ortholog); mitochondrial inner membrane (ortholog) NW_004955542 66214 70456 - 102029446 AGCD01071456;GBDJ01418140;XM_005411104 XP_005411161 MODEL 8874890 protein-coding LOC102018009 anthrax toxin receptor-like NW_004955510 6344262 6376039 + 102018009 AGCD01066305;AGCD01066306;GBDJ01209437;XM_005407924;XM_005407925;XM_005407926;XM_005407927;XM_013506336 XP_005407981;XP_005407982;XP_005407983;XP_005407984;XP_013361790 MODEL 151707893 mirna MIR92A1 microRNA 92a-1 8731549 pseudo LOC102015335 olfactory receptor 10AG1-like NW_004955511 5013534 5016613 - 102015335 AGCD01066542 MODEL 8916438 protein-coding Sdr42e1 short chain dehydrogenase/reductase family 42E, member 1 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955564 2019135 2042680 + 102025734 AGCD01074252;AGCD01074253;AGCD01074254;AGCD01074255;GBCE01023135;XM_005413243 XP_005413300 MODEL 8770617 protein-coding Xrcc6 X-ray repair cross complementing 6 ENCODES a protein that exhibits 5'-deoxyribose-5-phosphate lyase activity (ortholog); ATP hydrolysis activity (ortholog); ATP-dependent activity, acting on DNA (ortholog); INVOLVED IN activation of innate immune response (ortholog); cellular hyperosmotic salinity response (ortholog); cellular response to gamma radiation (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Animal Disease Models (ortholog); basal cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); DNA-dependent protein kinase complex (ortholog); DNA-dependent protein kinase-DNA ligase 4 complex (ortholog) NW_004955413 27135785 27158344 + 102021869 AGCD01014495;AGCD01014496;GBCE01053767;XM_005379361;XM_005379362;XM_005379363;XM_005379364;XM_013511358;XM_013511359;XM_013511360 XP_005379418;XP_005379419;XP_005379420;XP_005379421;XP_013366812;XP_013366813;XP_013366814 MODEL 8752449 protein-coding Neurl1 neuralized E3 ubiquitin protein ligase 1 ENCODES a protein that exhibits translation factor activity, non-nucleic acid binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); flagellated sperm motility (ortholog); lactation (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); Colorectal Neoplasms (ortholog); desmoplastic/nodular medulloblastoma (ortholog); FOUND IN apical dendrite (ortholog); cytoplasm (ortholog); dendritic spine (ortholog) NW_004955485 7015969 7046089 - 102014139 AGCD01058631;AGCD01058632;AGCD01058633;GBCB01004044;GBDJ01140436;XM_013504075 XP_013359529 MODEL 8888377 pseudo LOC102022647 B-cell CLL/lymphoma 7 protein family member C pseudogene NW_004955445 7513797 7515845 - 102022647 AGCD01039543 MODEL 8737456 protein-coding Lamtor4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); positive regulation of TOR signaling (ortholog); positive regulation of TORC1 signaling (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN FNIP-folliculin RagC/D GAP (ortholog); intracellular membrane-bounded organelle (ortholog); lysosomal membrane (ortholog) NW_004955573 649604 653185 - 102027244 AGCD01074996;GBCB01103131;XM_005413740;XM_013509468 XP_005413797;XP_013364922 MODEL 8989021 protein-coding Sarm1 sterile alpha and TIR motif containing 1 ENCODES a protein that exhibits identical protein binding (ortholog); NAD+ nucleosidase activity (ortholog); NAD+ nucleosidase activity, cyclic ADP-ribose generating (ortholog); INVOLVED IN modification of postsynaptic structure (ortholog); NAD catabolic process (ortholog); nervous system process (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); genetic disease (ortholog); hereditary folate malabsorption (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955481 4743458 4763766 - 102004279 AGCD01056950;AGCD01056951;GBCE01145647;XM_005402754 XP_005402811 MODEL 8829206 protein-coding Tank TRAF family member associated NFKB activator ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); deubiquitinase activator activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to interleukin-1 (ortholog); cellular response to ionizing radiation (ortholog); cellular response to tumor necrosis factor (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Breast Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); protein-containing complex (ortholog) NW_004955449 12470203 12561364 - 102024402 AGCD01042115;AGCD01042116;AGCD01042117;AGCD01042118;GBCE01008309;XM_005393341;XM_005393343;XM_013518753;XM_013518754;XM_013518755;XM_013518757;XM_013518758;XM_013518759 XP_005393398;XP_005393400;XP_013374207;XP_013374208;XP_013374209;XP_013374211;XP_013374212;XP_013374213 MODEL 8799521 protein-coding Lamtor5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); negative regulation of apoptotic process (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Breast Neoplasms (ortholog); developmental and epileptic encephalopathy 32 (ortholog); FOUND IN cytosol (ortholog); FNIP-folliculin RagC/D GAP (ortholog); lysosomal membrane (ortholog) NW_004955435 13896320 13900742 - 102026466 AGCD01033212;GBCB01000421;XM_013516568 XP_013372022 MODEL 8938904 protein-coding Dhcr7 7-dehydrocholesterol reductase ENCODES a protein that exhibits 7-dehydrocholesterol reductase activity (ortholog); cholesterol-5,6-oxide hydrolase activity (ortholog); INVOLVED IN blood vessel development (ortholog); cholesterol biosynthetic process (ortholog); cholesterol biosynthetic process via lathosterol (ortholog); PARTICIPATES IN cholesterol biosynthetic pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); acute promyelocytic leukemia (ortholog); Animal Disease Models (ortholog); FOUND IN endoplasmic reticulum (ortholog); nuclear outer membrane (ortholog) NW_004955422 15119155 15136771 + 102016485 AGCD01022876;GBCE01123738;XM_005384227;XM_005384228;XM_005384229;XM_013514319 XP_005384284;XP_005384285;XP_005384286;XP_013369773 MODEL 8816666 protein-coding Xrn1 5'-3' exoribonuclease 1 ENCODES a protein that exhibits 5'-3' RNA exonuclease activity (ortholog); G-quadruplex DNA binding (ortholog); G-quadruplex RNA binding (ortholog); INVOLVED IN cellular response to cycloheximide (ortholog); cellular response to puromycin (ortholog); histone mRNA catabolic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Neurodevelopmental Disorders (ortholog); Staphylococcal Infections (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955508 3441540 3561896 + 102014073 AGCD01065811;AGCD01065812;AGCD01065813;AGCD01065814;AGCD01065815;AGCD01065816;GBBH01016162;XM_005407742;XM_013506250;XM_013506251;XM_013506252 XP_005407799;XP_013361704;XP_013361705;XP_013361706 MODEL 8800190 protein-coding Erh ERH mRNA splicing and mitosis factor ENCODES a protein that exhibits methyl-CpG binding (ortholog); FOUND IN methylosome (ortholog); midbody (ortholog); nucleus (ortholog) NW_004955466 960245 976449 + 102027958 AGCD01050685;AGCD01050686;GBBH01031291;XM_005399034 XP_005399091 MODEL 39132993 snrna U1 U1 spliceosomal RNA 39132776 snrna U6 U6 spliceosomal RNA 8711921 protein-coding LOC102008850 centromere protein Q-like NW_004955481 3368425 3369339 + 102008850 AGCD01056902;XM_013503357 XP_013358811 MODEL 9025959 protein-coding Spin1 spindlin 1 ENCODES a protein that exhibits histone H3K4me3 reader activity (ortholog); histone reader activity (ortholog); methylated histone binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); positive regulation of Wnt signaling pathway (ortholog); protein localization to chromatin (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN chromatin (ortholog); cytosol (ortholog); nuclear membrane (ortholog) NW_004955515 3470956 3518909 - 102019522 AGCD01067287;AGCD01067288;GBCQ01098007;GBDJ01091296;XM_005408884;XM_013506879 XP_005408941;XP_013362333 MODEL 8970579 protein-coding Lancl1 LanC like glutathione S-transferase 1 ENCODES a protein that exhibits glutathione binding (ortholog); glutathione transferase activity (ortholog); low-density lipoprotein particle receptor binding (ortholog); INVOLVED IN cellular detoxification (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); primary pulmonary hypertension (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN plasma membrane (ortholog) NW_004955457 5055774 5087570 + 102028058 AGCD01046806;GBDF01003643;GBDF01003644;XM_013520773 XP_013376227 MODEL 8707787 pseudo LOC102007358 olfactory receptor 5W2-like NW_004955511 700104 706604 - 102007358 AGCD01066338;AGCD01066339;XM_005408208 MODEL 8717162 ncrna LOC102007693 uncharacterized LOC102007693 NW_004955437 532416 541946 + 102007693 AGCD01034142;AGCD01034143;AGCD01034144;GBDJ01142993;XR_261816 MODEL 8781443 protein-coding Vps35 VPS35 retromer complex component ENCODES a protein that exhibits D1 dopamine receptor binding (ortholog); INVOLVED IN endocytic recycling (ortholog); lysosome organization (ortholog); mitochondrial fragmentation involved in apoptotic process (ortholog); PARTICIPATES IN altered retromer-mediated pathway; Parkinson's disease pathway; retromer-mediated pathway; ASSOCIATED WITH genetic disease (ortholog); glycogen storage disease IXB (ortholog); late onset Parkinson's disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dopaminergic synapse (ortholog) NW_004955448 207582 240264 - 102014722 AGCD01041224;AGCD01041225;AGCD01041226;GBDK01141203;XM_005392978 XP_005393035 MODEL 8852141 protein-coding Slc16a10 solute carrier family 16 member 10 ENCODES a protein that exhibits aromatic amino acid transmembrane transporter activity (ortholog); L-phenylalanine transmembrane transporter activity (ortholog); L-tryptophan transmembrane transporter activity (ortholog); INVOLVED IN aromatic amino acid transport (ortholog); thyroid hormone generation (ortholog); thyroid hormone transport (ortholog); ASSOCIATED WITH esophagus squamous cell carcinoma (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell junction (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955411 35758612 35871179 + 102025888 AGCD01012457;GBCB01059371;XM_013510862;XM_013510863;XM_013510864;XM_013510865;XR_001232837;XR_001232838 XP_013366316;XP_013366317;XP_013366318;XP_013366319 MODEL 8719720 protein-coding Ppp2r1a protein phosphatase 2 scaffold subunit Aalpha ENCODES a protein that exhibits protein antigen binding (ortholog); protein heterodimerization activity (ortholog); protein phosphatase regulator activity (ortholog); INVOLVED IN chromosome segregation (ortholog); female meiotic nuclear division (ortholog); meiotic sister chromatid cohesion, centromeric (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 36 (ortholog); Disease Progression (ortholog); FOUND IN chromatin (ortholog); chromosome, centromeric region (ortholog); cytosol (ortholog) NW_004955558 381794 410485 + 102004524 AGCD01073369;GBBH01030900;XM_005412660 XP_005412717 MODEL 8751758 pseudo LOC102012361 iron-sulfur cluster assembly 1 homolog, mitochondrial pseudogene NW_004955437 12049308 12050497 - 102012361 AGCD01034594 MODEL 8820965 protein-coding LOC102006233 olfactory receptor 10J4-like NW_004955468 11106424 11107365 - 102006233 AGCD01052114;XM_005400170 XP_005400227 MODEL 8719494 ncrna LOC102019568 uncharacterized LOC102019568 NW_004955455 1787821 1789349 + 102019568 AGCD01045585;GBDF01251154;XR_001236284;XR_001236285 MODEL 10218752 ncrna LOC106146935 uncharacterized LOC106146935 NW_004955506 4266160 4271938 - 106146935 AGCD01065331;XR_001231583;XR_001231584 MODEL 8868043 protein-coding Bmi1 BMI1 proto-oncogene, polycomb ring finger ENCODES a protein that exhibits chromatin binding (ortholog); promoter-specific chromatin binding (ortholog); RING-like zinc finger domain binding (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); brain development (ortholog); cellular response to dexamethasone stimulus (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); acute pancreatitis (ortholog); Chronic Pancreatitis (ortholog); FOUND IN cytosol (ortholog); heterochromatin (ortholog); nuclear body (ortholog) NW_004955429 6548586 6553730 - 102017361 AGCD01028551;GBDK01001879;GBDK01001881;XM_013515495 XP_013370949 MODEL 8814652 pseudo LOC102022651 mitochondrial import inner membrane translocase subunit Tim9 pseudogene NW_004955448 10995715 10996226 + 102022651 AGCD01041510;XM_005393162 MODEL 8781613 protein-coding Znf470 zinc finger protein 470 FOUND IN nuclear body (ortholog); nucleoplasm (ortholog) NW_004955567 277846 290201 - 102019213 AGCD01074397;AGCD01074398;GBCB01059609;XM_005413307 XP_005413364 MODEL 8702059 pseudo LOC102028787 60S ribosomal protein L36a-like NW_004955519 2803335 2804519 + 102028787 AGCD01067942;XM_005409209 MODEL 8893509 pseudo LOC102003109 zinc finger CCCH domain-containing protein 11A pseudogene NW_004955467 2952870 2954035 + 102003109 AGCD01051321 MODEL 8784437 protein-coding Ppp2r1b protein phosphatase 2 scaffold subunit Abeta INVOLVED IN apoptotic process involved in morphogenesis (ortholog); positive regulation of extrinsic apoptotic signaling pathway in absence of ligand (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH ataxia telangiectasia (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); Carney-Stratakis syndrome (ortholog); FOUND IN glutamatergic synapse (ortholog); membrane raft (ortholog); synapse (ortholog) NW_004955412 13458078 13494583 - 102015938 AGCD01012836;AGCD01012837;AGCD01012838;GBDF01004755;XM_013511030;XM_013511031;XM_013511032;XM_013511033;XM_013511034;XM_013511035;XM_013511036;XM_013511037;XM_013511038 XP_013366484;XP_013366485;XP_013366486;XP_013366487;XP_013366488;XP_013366489;XP_013366490;XP_013366491;XP_013366492 MODEL 8722007 pseudo LOC102019572 26S protease regulatory subunit 10B-like NW_004955409 2430344 2431601 - 102019572 AGCD01009199 MODEL 8753136 ncrna LOC102023012 uncharacterized LOC102023012 NW_004955463 6158930 6199332 + 102023012 AGCD01049657;AGCD01049658;AGCD01049659;GBDF01178775;XR_263154 MODEL 8883209 pseudo LOC102018010 olfactory receptor 8K3-like NW_004955511 1331160 1331970 + 102018010 AGCD01066365 MODEL 8971154 protein-coding Klk11 kallikrein related peptidase 11 ASSOCIATED WITH genetic disease (ortholog); Ichthyosis with Erythrokeratoderma (ortholog); FOUND IN extracellular region (ortholog) NW_004955558 1459761 1464582 + 102022431 AGCD01073444;GBDK01185238;XM_005412717;XM_013508910;XM_013508911;XM_013508912;XM_013508914;XM_013508915 XP_005412774;XP_013364364;XP_013364365;XP_013364366;XP_013364368;XP_013364369 MODEL 8832611 protein-coding Tnfrsf17 TNF receptor superfamily member 17 INVOLVED IN lymphocyte homeostasis (ortholog); ASSOCIATED WITH colon carcinoma (ortholog); COVID-19 (ortholog); desmoplastic small round cell tumor (ortholog) NW_004955442 6626434 6651193 - 102023531 AGCD01037591;AGCD01037592;GBDK01160382;XM_005391151 XP_005391208 MODEL 39132777 snrna U6 U6 spliceosomal RNA 8993491 ncrna LOC102010017 uncharacterized LOC102010017 NW_004955451 14756261 14759461 - 102010017 AGCD01043570;GBDK01285033;XR_262608 MODEL 9032520 pseudo LOC102018336 40S ribosomal protein SA pseudogene NW_004955440 15872537 15873432 + 102018336 AGCD01036502 MODEL 8909719 pseudo LOC102013537 coiled-coil domain-containing protein 90B, mitochondrial pseudogene NW_004955533 59109 60126 - 102013537 AGCD01070311 MODEL 8917191 pseudo LOC102027103 DNA endonuclease RBBP8 pseudogene NW_004955432 5725983 5726747 - 102027103 AGCD01030796 MODEL 8778209 protein-coding LOC102008851 solute carrier family 7 member 13-like NW_004955417 3044836 3065300 + 102008851 AGCD01017903;XM_013512697 XP_013368151 MODEL 8914873 protein-coding Sdr42e2 short chain dehydrogenase/reductase family 42E, member 2 ASSOCIATED WITH autistic disorder (ortholog); chromosome 16p12.1 deletion syndrome (ortholog); schizophrenia (ortholog) NW_004955493 834582 849058 + 102012210 AGCD01060866;GBDF01294445;XM_005405068 XP_005405125 MODEL 8965650 ncrna LOC102024049 uncharacterized LOC102024049 NW_004955537 9950 26774 - 102024049 AGCD01070845;AGCD01070846;AGCD01070847;GBDF01112305;XR_264768 MODEL 8802521 protein-coding Ppp2r2a protein phosphatase 2 regulatory subunit Balpha ENCODES a protein that exhibits enzyme-substrate adaptor activity (ortholog); protein phosphatase 2A binding (ortholog); protein phosphatase regulator activity (ortholog); INVOLVED IN protein dephosphorylation (ortholog); regulation of chromosome segregation (ortholog); response to morphine (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Chromosomal Instability (ortholog); Emphysema (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN glutamatergic synapse (ortholog); protein phosphatase type 2A complex (ortholog); synapse (ortholog) NW_004955403 49042188 49113743 + 102026933 AGCD01002935;GBCB01025310;GBDI01135179;XM_013514116 XP_013369570 MODEL 8915591 protein-coding LOC102017112 C-type lectin domain family 4 member A-like NW_004955413 5336799 5348874 - 102017112 AGCD01013669;GBDK01384989;XM_005378873;XM_013511570;XM_013511571;XM_013511572;XM_013511573;XR_001233009 XP_005378930;XP_013367024;XP_013367025;XP_013367026;XP_013367027 MODEL 8882591 protein-coding Tfap2b transcription factor AP-2 beta ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN aorta morphogenesis (ortholog); collecting duct development (ortholog); distal tubule development (ortholog); ASSOCIATED WITH angle-closure glaucoma (ortholog); Body Weight (ortholog); Char syndrome (ortholog); FOUND IN nucleus (ortholog) NW_004955411 7143095 7171285 - 102003421 AGCD01011697;AGCD01011698;GBCQ01004319;XM_005377662;XM_005377663;XM_013510933;XR_259924 XP_005377719;XP_005377720;XP_013366387 MODEL 8828715 ncrna LOC102005921 uncharacterized LOC102005921 NW_004955468 5830269 5849954 + 102005921 AGCD01051978;GBDF01113513;XR_263392 MODEL 8935282 ncrna LOC102009239 uncharacterized LOC102009239 NW_004955586 997656 1002493 + 102009239 AGCD01076049;GBDJ01242970;XR_265115 MODEL 8709091 protein-coding LOC102006234 apolipoprotein L2-like NW_004955413 22477358 22499340 - 102006234 AGCD01014302;GBDK01079420;XM_005379648 XP_005379705 MODEL 8893865 protein-coding Sdr9c7 short chain dehydrogenase/reductase family 9C member 7 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); ASSOCIATED WITH autosomal recessive congenital ichthyosis (ortholog); autosomal recessive congenital ichthyosis 13 (ortholog); cataract 15 multiple types (ortholog) NW_004955458 4538113 4551586 - 102015928 AGCD01047418;GBCC01015389;XM_005397333 XP_005397390 MODEL 10223539 pseudo LOC106146936 RWD domain-containing protein 4 pseudogene NW_004955506 5684858 5685853 - 106146936 AGCD01065379 MODEL 39132994 snrna U1 U1 spliceosomal RNA 9048988 ncrna LOC102028790 uncharacterized LOC102028790 NW_004955435 3367229 3458904 - 102028790 AGCD01032785;AGCD01032786;AGCD01032787;GBDK01170689;XR_001234889;XR_261657 MODEL 8892574 protein-coding LOC102024671 translational activator of cytochrome c oxidase 1 ENCODES a protein that exhibits mitochondrial ribosome binding (ortholog); mRNA binding (ortholog); rRNA binding (ortholog); INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); motor learning (ortholog); regulation of cytochrome-c oxidase activity (ortholog); ASSOCIATED WITH cytochrome-c oxidase deficiency disease (ortholog); genetic disease (ortholog); Leigh disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955478 8198563 8204820 - 102024671 AGCD01056014;GBCE01168605;XM_005402203 XP_005402260 MODEL 8897308 pseudo LOC102018013 protein AF-9 pseudogene NW_004955432 1643335 1645310 + 102018013 AGCD01030603 MODEL 39132999 snrna U1 U1 spliceosomal RNA 8903697 pseudo LOC102026058 60S ribosomal protein L7a pseudogene NW_004955449 10010072 10141311 + 102026058 AGCD01042064;AGCD01042065;AGCD01042066;AGCD01042067 MODEL 39132778 snrna U6 U6 spliceosomal RNA 8837863 protein-coding Neurl1b neuralized E3 ubiquitin protein ligase 1B ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN ubiquitin-dependent endocytosis (ortholog); ASSOCIATED WITH atrial heart septal defect 7 (ortholog); Atrial Septal Defect with Atrioventricular Conduction Defects (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955408 25369440 25404308 + 102026398 AGCD01008640;AGCD01008641;GBBH01214795;GBDI01187937;XM_005376340 XP_005376397 MODEL 8967142 protein-coding Spin4 spindlin family member 4 ENCODES a protein that exhibits histone H3K4me3 reader activity (ortholog); methylated histone binding (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955475 3967813 3971725 - 102030189 AGCD01054863;XM_005401549 XP_005401606 MODEL 8915093 protein-coding Lancl2 LanC like glutathione S-transferase 2 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of abscisic acid-activated signaling pathway (ortholog); ASSOCIATED WITH autistic disorder (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cortical actin cytoskeleton (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955456 204434 250143 - 102022358 AGCD01046201;AGCD01046202;GBBH01188059;GBDF01001312;XM_013520628 XP_013376082 MODEL 8890008 protein-coding LOC102021365 histone H2A.Z ENCODES a protein that exhibits chromatin DNA binding (ortholog); nucleosomal DNA binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to estradiol stimulus (ortholog); cellular response to insulin stimulus (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN Barr body (ortholog); euchromatin (ortholog); heterochromatin (ortholog) NW_004955496 7733910 7735525 + 102021365 AGCD01062383;AGCD01062384;GBDF01006515;XM_005406261;XM_005406262 XP_005406318;XP_005406319 MODEL 8975151 protein-coding LOC102028794 adenosine receptor A3 NW_004955435 14965337 14985864 - 102028794 AGCD01033258;AGCD01033259;GBDF01097988;XM_013516497;XM_013516498 XP_013371951;XP_013371952 MODEL 8781560 protein-coding Ido1 indoleamine 2,3-dioxygenase 1 ENCODES a protein that exhibits amino acid binding (ortholog); indoleamine 2,3-dioxygenase activity (ortholog); oxygen binding (ortholog); INVOLVED IN inflammatory response (ortholog); kynurenic acid biosynthetic process (ortholog); L-tryptophan catabolic process to kynurenine (ortholog); PARTICIPATES IN kynurenine metabolic pathway; tryptophan metabolic pathway; ASSOCIATED WITH acquired immunodeficiency syndrome (ortholog); Acute Lung Injury (ortholog); Animal Toxoplasmosis (ortholog); FOUND IN cytoplasm (ortholog); smooth muscle contractile fiber (ortholog); stereocilium bundle (ortholog) NW_004955536 2944770 2955829 - 102018327 AGCD01070806;GBDK01080179;XM_005410538 XP_005410595 MODEL 8926458 protein-coding LOC102023737 trace amine-associated receptor 4-like NW_004955436 13171911 13172951 - 102023737 AGCD01033855;XM_005389215 XP_005389272 MODEL 9019379 protein-coding LOC102013545 olfactory receptor 12-like NW_004955542 1216378 1219233 - 102013545 AGCD01071494;AGCD01071495;XM_005411243 XP_005411300 MODEL 39133002 snrna U1 U1 spliceosomal RNA 9060418 pseudo LOC102026060 40S ribosomal protein S10 pseudogene NW_004955450 2685641 2686192 + 102026060 AGCD01042394 MODEL 8852551 protein-coding Slc16a11 solute carrier family 16 member 11 ENCODES a protein that exhibits pyruvate transmembrane transporter activity (ortholog); INVOLVED IN lipid metabolic process (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955467 9891909 9894192 + 102007209 AGCD01051535;GBDF01184767;XM_005399574;XM_005399575;XM_005399576 XP_005399631;XP_005399632;XP_005399633 MODEL 39132779 snrna U6 U6 spliceosomal RNA 8838854 protein-coding Lrfn2 leucine rich repeat and fibronectin type III domain containing 2 INVOLVED IN modulation of chemical synaptic transmission (ortholog); regulation of postsynapse organization (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN cell surface (ortholog); postsynapse (ortholog); postsynaptic density membrane (ortholog) NW_004955437 7202466 7358616 - 102004855 AGCD01034453;AGCD01034454;AGCD01034455;AGCD01034456;AGCD01034457;AGCD01034458;GBCB01112705;XM_005389663 XP_005389720 MODEL 8942660 pseudo LOC102021368 ferritin light chain pseudogene NW_004955500 1650018 1650857 + 102021368 AGCD01063669 MODEL 8954667 protein-coding Dhdds dehydrodolichyl diphosphate synthase subunit ENCODES a protein that exhibits ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity (ortholog); prenyltransferase activity (ortholog); INVOLVED IN dolichol biosynthetic process (ortholog); dolichyl diphosphate biosynthetic process (ortholog); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); developmental delay and seizures with or without movement abnormalities (ortholog); fundus dystrophy (ortholog); FOUND IN dehydrodolichyl diphosphate synthase complex (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955452 5811053 5844992 + 102017944 AGCD01044055;AGCD01044056;AGCD01044057;AGCD01044058;GBDK01196360;XM_005394858;XM_013519674 XP_005394915;XP_013375128 MODEL 8805843 protein-coding LOC102015337 zinc finger protein 709-like NW_004955432 4507438 4533970 + 102015337 AGCD01030723;AGCD01030724;AGCD01030725;GBCE01123757;XM_013515927;XM_013515928 XP_013371381;XP_013371382 MODEL 10094491 ncrna LOC106146937 uncharacterized LOC106146937 NW_004955506 49095 56059 - 106146937 AGCD01065212;GBDF01157014;XR_001231585 MODEL 8776602 protein-coding Sds serine dehydratase ENCODES a protein that exhibits L-serine ammonia-lyase activity (ortholog); protein homodimerization activity (ortholog); pyridoxal phosphate binding (ortholog); INVOLVED IN L-serine catabolic process (ortholog); protein-containing complex assembly (ortholog); pyruvate biosynthetic process (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955482 9646523 9653471 - 102017661 AGCD01057578;GBDF01049073;XM_005403224;XM_005403225 XP_005403281;XP_005403282 MODEL 8765971 ncrna LOC102021370 uncharacterized LOC102021370 NW_004955426 17761060 17765467 - 102021370 AGCD01026506;GBDK01047985;XR_261199 MODEL 39132656 snrna U6 U6 spliceosomal RNA 9059031 protein-coding Tnfrsf18 TNF receptor superfamily member 18 INVOLVED IN positive regulation of cell adhesion (ortholog); positive regulation of leukocyte migration (ortholog); positive regulation of tyrosine phosphorylation of STAT protein (ortholog); ASSOCIATED WITH anogenital venereal wart (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); FOUND IN external side of plasma membrane (ortholog) NW_004955486 9571527 9573733 + 102029751 AGCD01059191;GBDI01221225;XM_005404252;XM_005404253;XM_013504221 XP_005404309;XP_005404310;XP_013359675 MODEL 8885121 ncrna LOC102024674 uncharacterized LOC102024674 NW_004955417 29322605 29376478 + 102024674 AGCD01018597;GBDF01149810;XR_260515 MODEL 8913814 protein-coding LOC102003358 zinc finger protein 709-like NW_004955499 342903 348346 + 102003358 AGCD01063222;GBDI01384946;XM_013505570 XP_013361024 MODEL 10188278 ncrna LOC106146938 uncharacterized LOC106146938 NW_004955506 6751070 6753790 - 106146938 AGCD01065452;AGCD01065453;GBDJ01349855;XR_001231586 MODEL 39133662 mirna MIR96 microRNA 96 8785132 protein-coding LOC102017113 WD repeat-containing protein 87 NW_004955468 1438795 1457991 + 102017113 AGCD01051768;AGCD01051769;GBDF01188390;GBDF01188397;XM_013522425 XP_013377879 MODEL 9007829 protein-coding LOC102013554 olfactory receptor 4L1-like NW_004955550 104998 126818 - 102013554 AGCD01072481;AGCD01072482;XM_005412028 XP_005412085 MODEL 8959545 protein-coding Xrn2 5'-3' exoribonuclease 2 ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); 5'-3' exonuclease activity (ortholog); identical protein binding (ortholog); INVOLVED IN hippocampus development (ortholog); neuron differentiation (ortholog); retina development in camera-type eye (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; ribosome biogenesis pathway; RNA polymerase II transcription termination pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); familial hyperinsulinemic hypoglycemia 1 (ortholog); leiomyosarcoma (ortholog); FOUND IN aggresome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955415 29107060 29175374 + 102023586 AGCD01016647;AGCD01016648;AGCD01016649;GBDF01082246;XM_005380952 XP_005381009 MODEL 8797830 protein-coding Tnfrsf19 TNF receptor superfamily member 19 INVOLVED IN hair follicle development (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2C (ortholog); melanoma (ortholog); Nasopharyngeal Neoplasms (ortholog) NW_004955497 3945119 4022478 + 102018509 AGCD01062561;AGCD01062562;AGCD01062563;GBCE01052470;GBCE01052471;XM_013505499 XP_013360953 MODEL 9056957 protein-coding LOC102005923 apolipoprotein L3-like NW_004955413 22422434 22450771 - 102005923 AGCD01014300;AGCD01014301;AGCD01014302;GBBH01182541;XM_005379647 XP_005379704 MODEL 8958151 protein-coding Gpr68 G protein-coupled receptor 68 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cellular response to acidic pH (ortholog); cellular response to pH (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 2A6 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955438 13553770 13575093 - 102017506 AGCD01035292;AGCD01035293;AGCD01035294;GBCE01179739;XM_005390296;XM_005390297;XM_005390298;XM_005390300;XM_005390301;XM_005390303;XM_013517223;XM_013517224 XP_005390353;XP_005390354;XP_005390355;XP_005390357;XP_005390358;XP_005390360;XP_013372677;XP_013372678 MODEL 8959091 protein-coding Usp21 ubiquitin specific peptidase 21 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type peptidase activity (ortholog); deNEDDylase activity (ortholog); INVOLVED IN neuron projection development (ortholog); protein deubiquitination (ortholog); transcription initiation-coupled chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955468 12923121 12929780 + 102003531 AGCD01052192;GBDK01189268;XM_013522351 XP_013377805 MODEL 9026209 protein-coding Ido2 indoleamine 2,3-dioxygenase 2 ENCODES a protein that exhibits indoleamine 2,3-dioxygenase activity (ortholog); INVOLVED IN L-tryptophan catabolic process to kynurenine (ortholog); PARTICIPATES IN kynurenine metabolic pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Endotoxemia (ortholog); liver cirrhosis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955536 2894410 2938862 - 102018023 AGCD01070804;AGCD01070805;AGCD01070806;GBCQ01095138;XM_013507732 XP_013363186 MODEL 8730209 pseudo LOC102013556 calmodulin-like NW_004955442 9087589 9088397 + 102013556 AGCD01037662 MODEL 8890664 protein-coding Slc16a12 solute carrier family 16 member 12 ENCODES a protein that exhibits creatine transmembrane transporter activity (ortholog); uniporter activity (ortholog); INVOLVED IN creatine transmembrane transport (ortholog); creatinine metabolic process (ortholog); ASSOCIATED WITH autoimmune lymphoproliferative syndrome (ortholog); cataract (ortholog); cataract 47 (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955425 3474814 3560138 + 102015744 AGCD01025290;AGCD01025291;GBCQ01098505;XM_005385849 XP_005385906 MODEL 8838068 protein-coding LOC102010018 chromosome unknown open reading frame, human C12orf50 ASSOCIATED WITH Joubert syndrome 1 (ortholog) NW_004955405 25482450 25520053 - 102010018 AGCD01005176;AGCD01005177;GBDF01007940;XM_013518146 XP_013373600 MODEL 8904253 ncrna LOC102024051 uncharacterized LOC102024051 NW_004955540 1528360 1541262 - 102024051 AGCD01071304;GBDF01156252;XR_001232115;XR_001232116 MODEL 8954407 protein-coding Tnfrsf1a TNF receptor superfamily member 1A ENCODES a protein that exhibits protease binding (ortholog); protein-containing complex binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN aortic valve development (ortholog); cell surface receptor signaling pathway (ortholog); cell surface receptor signaling pathway via JAK-STAT (ortholog); PARTICIPATES IN ceramide signaling pathway; nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH acne (ortholog); acquired immunodeficiency syndrome (ortholog); Acute Experimental Pancreatitis (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); extracellular space (ortholog) NW_004955413 3982670 3996320 - 102012749 AGCD01013591;GBDK01007941;XM_005378759;XM_013511327;XM_013511328 XP_005378816;XP_013366781;XP_013366782 MODEL 9064024 protein-coding LOC102021376 LIM zinc-binding domain-containing Nebulette-like NW_004955429 7358758 7369645 + 102021376 AGCD01028590;AGCD01028591;GBBH01110887;GBCQ01178173;XM_005386937 XP_005386994 MODEL 9014082 protein-coding Spindoc spindlin interactor and repressor of chromatin binding INVOLVED IN DNA damage response (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN nucleus (ortholog); site of DNA damage (ortholog) NW_004955422 21190135 21198182 - 102022614 AGCD01023104;GBCQ01124597;GBDI01176756;XM_013514066;XM_013514067;XM_013514068 XP_013369520;XP_013369521;XP_013369522 MODEL 8832133 protein-coding Tfap2c transcription factor AP-2 gamma ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cerebral cortex development (ortholog); dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis (ortholog); epithelial cell differentiation (ortholog); ASSOCIATED WITH microcephaly (ortholog); Stomach Neoplasms (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955445 2626896 2636607 - 102007378 AGCD01039359;AGCD01039360;GBDJ01030904;XM_005392262 XP_005392319 MODEL 8904411 ncrna LOC102003110 uncharacterized LOC102003110 NW_004955468 3568605 3569514 - 102003110 AGCD01051863;GBDI01159838;XR_001236890;XR_263383 MODEL 8773039 pseudo LOC102009242 nucleolar and spindle-associated protein 1 pseudogene NW_004955402 63057108 63065990 + 102009242 AGCD01001653 MODEL 39132780 snrna U6 U6 spliceosomal RNA 8972812 protein-coding LOC102026064 L-threonine 3-dehydrogenase, mitochondrial-like NW_004955403 52745241 52753896 + 102026064 AGCD01003017;GBCE01040737;GBDF01306332;XM_013514503 XP_013369957 MODEL 8964989 pseudo LOC102021377 nucleosome assembly protein 1-like 1 pseudogene NW_004955429 13983451 13984153 - 102021377 AGCD01028771 MODEL 150537123 mirna MIR98 microRNA 98 8783881 protein-coding LOC102023014 phosphatidylinositol 3-kinase regulatory subunit gamma NW_004955464 12100598 12260750 + 102023014 AGCD01050180;AGCD01050181;AGCD01050182;AGCD01050183;AGCD01050184;AGCD01050185;AGCD01050186;AGCD01050187;AGCD01050188;AGCD01050189;GBDF01007439;XM_005398685;XM_005398686;XM_013521606;XM_013521607 XP_005398742;XP_005398743;XP_013377060;XP_013377061 MODEL 8811857 pseudo LOC102003112 olfactory receptor 10J4-like NW_004955468 11229311 11232918 + 102003112 AGCD01052123 MODEL 8865022 protein-coding LOC102015341 vomeronasal type-2 receptor 116-like NW_004955524 4084903 4216382 + 102015341 AGCD01068946;AGCD01068947;AGCD01068948;AGCD01068949;AGCD01068950;AGCD01068951;AGCD01068952;AGCD01068953;AGCD01068954;AGCD01068955;AGCD01068956;AGCD01068957;AGCD01068958;AGCD01068959;XM_013507204 XP_013362658 MODEL 8760906 pseudo LOC102027105 gametocyte-specific factor 1 pseudogene NW_004955519 4514234 4529682 + 102027105 AGCD01067985 MODEL 8756162 protein-coding Vps35l VPS35 endosomal protein sorting factor like INVOLVED IN endocytic recycling (ortholog); Golgi to plasma membrane transport (ortholog); ASSOCIATED WITH Ritscher-Schinzel syndrome (ortholog); Ritscher-Schinzel Syndrome 3 (ortholog); FOUND IN endosome (ortholog) NW_004955442 3292748 3415911 + 102009884 AGCD01037505;AGCD01037506;GBDF01044193;XM_005391112;XM_005391113;XM_013517706;XM_013517707;XM_013517708;XM_013517709;XM_013517710 XP_005391169;XP_005391170;XP_013373160;XP_013373161;XP_013373162;XP_013373163;XP_013373164 MODEL 8885025 protein-coding Sarnp SAP domain containing ribonucleoprotein ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN mRNA export from nucleus (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955458 3396443 3451193 - 102021210 AGCD01047301;AGCD01047302;GBDJ01421628;XM_005397259;XR_262968 XP_005397316 MODEL 8823190 protein-coding LOC102005927 olfactory receptor 52A5-like NW_004955414 21125400 21126350 - 102005927 AGCD01015407;XM_005380494 XP_005380551 MODEL 9000781 protein-coding Taok1 TAO kinase 1 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); kinase activity (ortholog); INVOLVED IN central nervous system neuron development (ortholog); DNA damage response (ortholog); execution phase of apoptosis (ortholog); PARTICIPATES IN p38 MAPK signaling pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 1 (ortholog); DEVELOPMENTAL DELAY WITH OR WITHOUT INTELLECTUAL IMPAIRMENT OR BEHAVIORAL ABNORMALITIES (ortholog); Developmental Disabilities (ortholog); FOUND IN cytosol (ortholog); microtubule cytoskeleton (ortholog); nuclear body (ortholog) NW_004955481 3698686 3836209 - 102008414 AGCD01056913;AGCD01056914;AGCD01056915;AGCD01056916;AGCD01056917;GBBH01160616;GBDK01127204;XM_013503358 XP_013358812 MODEL 8914387 pseudo LOC102022654 translationally-controlled tumor protein pseudogene NW_004955402 29324286 29324804 - 102022654 AGCD01000741 MODEL 8741246 protein-coding Sharpin SHANK associated RH domain interactor ENCODES a protein that exhibits identical protein binding (ortholog); polyubiquitin modification-dependent protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN apoptotic nuclear changes (ortholog); defense response to bacterium (ortholog); epidermis development (ortholog); PARTICIPATES IN integrin mediated signaling pathway; nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH atopic dermatitis (ortholog); AUTOINFLAMMATION WITH EPISODIC FEVER AND IMMUNE DYSREGULATION (ortholog); Brown-Vialetto-Van Laere syndrome 2 (ortholog); FOUND IN cytosol (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955454 2761725 2765929 - 102025652 AGCD01045033;GBDK01082298;XM_005395857;XR_001236235 XP_005395914 MODEL 8791297 protein-coding Sdsl serine dehydratase like ENCODES a protein that exhibits glutamate racemase activity (ortholog); identical protein binding (ortholog); L-serine ammonia-lyase activity (ortholog) NW_004955482 9656563 9670951 + 102018187 AGCD01057578;AGCD01057579;AGCD01057580;AGCD01057581;GBDK01189822;XM_005403227;XM_005403228;XM_013503596 XP_005403284;XP_005403285;XP_013359050 MODEL 8890107 pseudo LOC102024054 60S ribosomal protein L36 pseudogene NW_004955545 2470677 2471253 - 102024054 AGCD01071903 MODEL 8716155 protein-coding LOC102010019 phospholipase A2, membrane associated-like NW_004955452 597005 599899 - 102010019 AGCD01043819;XM_005395284 XP_005395341 MODEL 8797503 protein-coding Eri1 exoribonuclease 1 ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); histone pre-mRNA stem-loop binding (ortholog); ribosome binding (ortholog); INVOLVED IN histone mRNA catabolic process (ortholog); maturation of 5.8S rRNA (ortholog); rRNA 3'-end processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH amenorrhea (ortholog); Developmental Disabilities (ortholog); Hoxha-Aliu syndrome (ortholog); FOUND IN cytoplasm (ortholog); histone pre-mRNA 3'end processing complex (ortholog); nucleolus (ortholog) NW_004955463 5074921 5104341 + 102006224 AGCD01049629;AGCD01049630;AGCD01049631;AGCD01049632;GBBH01198207;XM_013521560 XP_013377014 MODEL 8780136 ncrna LOC102017118 uncharacterized LOC102017118 NW_004955414 28777799 28786784 + 102017118 AGCD01015687;AGCD01015688;GBDF01089447;XR_260208 MODEL 8822221 protein-coding Tnfrsf1b TNF receptor superfamily member 1B ENCODES a protein that exhibits tumor necrosis factor binding (ortholog); tumor necrosis factor receptor activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN aortic valve development (ortholog); cell surface receptor signaling pathway (ortholog); cellular response to growth factor stimulus (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH acne (ortholog); acquired immunodeficiency syndrome (ortholog); Acute Experimental Pancreatitis (ortholog); FOUND IN axon (ortholog); membrane (ortholog); membrane raft (ortholog) NW_004955486 1790531 1817986 - 102026430 AGCD01058964;GBDJ01141681;XM_005403956 XP_005404013 MODEL 9012893 pseudo LOC102024056 crooked neck-like protein 1 NW_004955443 299763 302020 - 102024056 AGCD01038096 MODEL 9061850 ncrna LOC102022657 uncharacterized LOC102022657 NW_004955403 4918680 4938377 - 102022657 AGCD01001800;AGCD01001801;GBDF01112630;XR_259157;XR_259158 MODEL 8732770 protein-coding Sebox SEBOX homeobox INVOLVED IN embryo development ending in birth or egg hatching (ortholog); oogenesis (ortholog) NW_004955481 4768121 4770611 + 102005377 AGCD01056951;GBDI01104261;XM_005415252 XP_005415309 MODEL 8818666 pseudo LOC102012364 protein angel homolog 2-like NW_004955439 11699313 11700945 - 102012364 AGCD01035919 MODEL 39132781 snrna U6 U6 spliceosomal RNA 8923188 protein-coding Dhdh dihydrodiol dehydrogenase ENCODES a protein that exhibits D-xylose 1-dehydrogenase (NADP+) activity (ortholog); INVOLVED IN D-xylose catabolic process (ortholog); ASSOCIATED WITH prostate cancer (ortholog); Prostatic Neoplasms (ortholog) NW_004955559 1706950 1719220 - 102028476 AGCD01073662;AGCD01073663;AGCD01073664;GBCQ01129279;XM_005412923 XP_005412980 MODEL 150537128 mirna MIRLET7F2 microRNA let-7f-2 8751896 ncrna LOC102023015 uncharacterized LOC102023015 NW_004955465 3866841 3869578 + 102023015 AGCD01050394;GBDF01077342;XR_263234 MODEL 9019949 protein-coding Ppp2r2b protein phosphatase 2 regulatory subunit Bbeta ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN mitochondrial fission (ortholog); mitochondrial fragmentation involved in apoptotic process (ortholog); neuron differentiation (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); brain disease (ortholog); breast cancer (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955415 7054296 7510179 + 102013283 AGCD01016035;AGCD01016036;AGCD01016037;AGCD01016038;AGCD01016039;AGCD01016040;AGCD01016041;AGCD01016042;AGCD01016043;AGCD01016044;GBDF01195584;XM_005380663;XM_005380664;XM_005380665;XM_013512388 XP_005380720;XP_005380721;XP_005380722;XP_013367842 MODEL 8864314 protein-coding Usp22 ubiquitin specific peptidase 22 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); enzyme binding (ortholog); histone H2A deubiquitinase activity (ortholog); INVOLVED IN G2/M transition of mitotic cell cycle (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of mitotic cell cycle (ortholog); PARTICIPATES IN histone modification pathway; RNA polymerase II transcription initiation pathway; FOUND IN SAGA complex (ortholog) NW_004955577 979317 1002478 - 102021924 AGCD01075426;AGCD01075427;GBCE01032158;GBDK01089639;XM_013509635 XP_013365089 MODEL 9007885 protein-coding Bmp1 bone morphogenetic protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); metalloendopeptidase activity (ortholog); peptidase activity (ortholog); INVOLVED IN positive regulation of cartilage development (ortholog); proteolysis (ortholog); ASSOCIATED WITH Acute Otitis Media (ortholog); Conotruncal Cardiac Defects (ortholog); genetic disease (ortholog); FOUND IN extracellular space (ortholog); vesicle (ortholog) NW_004955403 45660591 45693724 + 102015913 AGCD01002826;GBBH01142618;GBCE01002413;XM_013513783 XP_013369237 MODEL 8703278 protein-coding LOC102020472 olfactory receptor 5W2-like NW_004955511 5001133 5002068 + 102020472 AGCD01066542;XM_005408082 XP_005408139 MODEL 8802055 protein-coding Lancl3 LanC like family member 3 ASSOCIATED WITH autistic disorder (ortholog); McLeod syndrome (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955587 556105 658735 + 102011159 AGCD01076067;AGCD01076068;AGCD01076069;GBDJ01162414;XM_005414448 XP_005414505 MODEL 39132782 snrna U6 U6 spliceosomal RNA 8774436 pseudo LOC102005928 60S ribosomal protein L30-like NW_004955475 4519787 4520219 + 102005928 AGCD01054881;XR_263612 MODEL 8964662 protein-coding LOC102006239 olfactory receptor 51J1-like NW_004955414 21313687 21314640 + 102006239 AGCD01015412;XM_005380495 XP_005380552 MODEL 39133005 snrna U1 U1 spliceosomal RNA 8913061 protein-coding Taok2 TAO kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); MAP kinase kinase kinase activity (ortholog); mitogen-activated protein kinase kinase binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); axonogenesis (ortholog); basal dendrite arborization (ortholog); PARTICIPATES IN p38 MAPK signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN actin cytoskeleton (ortholog); axon (ortholog); axonal growth cone (ortholog) NW_004955493 6968537 6986608 - 102028765 AGCD01061153;GBDJ01228215;XM_005405211;XM_005405212;XM_005405214;XM_005405215;XM_005405216;XR_264090 XP_005405268;XP_005405269;XP_005405271;XP_005405272;XP_005405273 MODEL 8941899 pseudo LOC102023740 sorting nexin-3 pseudogene NW_004955536 2093035 2094868 - 102023740 AGCD01070777 MODEL 8791092 ncrna LOC102010020 uncharacterized LOC102010020 NW_004955453 14159202 14163339 + 102010020 AGCD01044858;GBDF01249804;XR_001236190;XR_262732 MODEL 8722851 ncrna LOC102018350 uncharacterized LOC102018350 NW_004955402 45846571 45854310 + 102018350 AGCD01001142;GBCQ01008628;XR_259093 MODEL 8943123 protein-coding Shb SH2 domain containing adaptor protein B ENCODES a protein that exhibits phosphotyrosine residue binding (ortholog); signaling receptor complex adaptor activity (ortholog); INVOLVED IN B cell proliferation (ortholog); blood vessel development (ortholog); blood vessel morphogenesis (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; vascular endothelial growth factor signaling pathway; FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955419 28423354 28555948 + 102027856 AGCD01020464;AGCD01020465;GBCQ01070022;GBDJ01352611;XM_005382857 XP_005382914 MODEL 8913957 pseudo LOC102005933 LYR motif-containing protein 2 pseudogene NW_004955418 22822234 22822422 + 102005933 AGCD01019292 MODEL 8841111 protein-coding LOC102021378 olfactory receptor 4A15-like NW_004955511 55303 56220 - 102021378 AGCD01066312;XM_005408175 XP_005408232 MODEL 8714280 protein-coding Ids iduronate 2-sulfatase ENCODES a protein that exhibits calcium ion binding (ortholog); iduronate-2-sulfatase activity (ortholog); sulfuric ester hydrolase activity (ortholog); INVOLVED IN dermatan sulfate proteoglycan catabolic process (ortholog); glycosaminoglycan catabolic process (ortholog); heparan sulfate proteoglycan catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Developmental Disabilities (ortholog); FOUND IN lysosomal lumen (ortholog); lysosome (ortholog) NW_004955498 1863002 1886720 - 102021366 AGCD01062752;GBCE01115350;XM_005406397 XP_005406454 MODEL 9035853 pseudo LOC102003114 40S ribosomal protein S2 pseudogene NW_004955469 9118926 9122699 - 102003114 AGCD01052491 MODEL 8930452 pseudo LOC102003359 transmembrane protein 254 pseudogene NW_004955424 24750779 24751166 - 102003359 AGCD01025032 MODEL 8740844 protein-coding Shbg sex hormone binding globulin INVOLVED IN primary spermatocyte growth (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog) NW_004955467 9301173 9305010 - 102006891 AGCD01051493;AGCD01051494;GBCQ01035544;XM_005399468;XM_005399469;XM_005399470;XM_013522146 XP_005399525;XP_005399526;XP_005399527;XP_013377600 MODEL 9037736 ncrna LOC102015345 uncharacterized LOC102015345 NW_004955533 468505 485203 - 102015345 AGCD01070319;GBDF01051497;XR_001232031;XR_001232032 MODEL 8865523 protein-coding LOC102005934 olfactory receptor 1L3-like NW_004955419 5269472 5270444 - 102005934 AGCD01019797;XM_013513102 XP_013368556 MODEL 10207226 pseudo LOC106146939 calcyclin-binding protein pseudogene NW_004955506 4521875 4522518 - 106146939 AGCD01065338 MODEL 8864025 protein-coding Vps36 vacuolar protein sorting 36 homolog ENCODES a protein that exhibits ubiquitin binding (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog); endosome (ortholog); ESCRT II complex (ortholog) NW_004955431 5443050 5466577 + 102014596 AGCD01030030;AGCD01030031;AGCD01030032;GBBH01208103;GBCE01008952;XM_013515869 XP_013371323 MODEL 8751901 protein-coding LOC102023016 olfactory receptor 148-like NW_004955412 24774653 24775579 + 102023016 AGCD01013125;XM_005378636 XP_005378693 MODEL 8959132 protein-coding Tfap2d transcription factor AP-2 delta ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN inferior colliculus development (ortholog); negative regulation of neuron apoptotic process (ortholog); positive regulation of DNA-templated transcription (ortholog); FOUND IN transcription regulator complex (ortholog) NW_004955411 7219474 7276350 - 102004257 AGCD01011699;AGCD01011700;XM_005377665 XP_005377722 MODEL 8859237 protein-coding LOC102009244 high mobility group protein B1-like NW_004957564 9 553 + 102009244 AGCD01080960;XM_005415232 XP_005415289 MODEL 8773419 pseudo LOC102006241 40S ribosomal protein S27-like pseudogene NW_004955475 4541672 4542105 + 102006241 AGCD01054882 MODEL 9060419 protein-coding LOC102026065 cytoskeleton-associated protein 2-like NW_004955403 5756594 5789342 - 102026065 AGCD01001820;XM_013514731 XP_013370185 MODEL 9065183 pseudo LOC102017121 ATP synthase mitochondrial F1 complex assembly factor 1 pseudogene NW_004955415 33142829 33143963 + 102017121 AGCD01016752 MODEL 8737739 pseudo LOC102023741 transcription elongation factor B polypeptide 2 pseudogene NW_004955437 9931487 9932633 + 102023741 AGCD01034550 MODEL 39132657 snrna U6 U6 spliceosomal RNA 8708057 protein-coding LOC102022658 conserved oligomeric Golgi complex subunit 1-like NW_004955716 2740 4643 - 102022658 AGCD01078165;GBDJ01020819;XM_005415076 XP_005415133 MODEL 9026012 protein-coding Neurl2 neuralized E3 ubiquitin protein ligase 2 INVOLVED IN myofibril assembly (ortholog); sarcomere organization (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); galactosialidosis (ortholog); FOUND IN muscle tendon junction (ortholog); VCB complex (ortholog) NW_004955445 11405195 11407819 + 102025403 AGCD01039690;GBCE01041745;XM_005392400 XP_005392457 MODEL 9030792 protein-coding LOC102024059 CD209 antigen-like protein E NW_004955563 1520908 1536722 + 102024059 AGCD01074151;AGCD01074152;GBDJ01280070;XM_005413157;XM_013509180;XM_013509181;XM_013509182 XP_005413214;XP_013364634;XP_013364635;XP_013364636 MODEL 8787308 ncrna LOC102024682 uncharacterized LOC102024682 NW_004955420 11668658 11669730 - 102024682 AGCD01020827;GBDF01224180;XR_001233716 MODEL 8882978 protein-coding Sec11a SEC11 homolog A, signal peptidase complex subunit ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); INVOLVED IN signal peptide processing (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); COVID-19 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); signal peptidase complex (ortholog) NW_004955416 14421985 14459233 + 102011310 AGCD01017264;AGCD01017265;AGCD01017266;AGCD01017267;AGCD01017268;AGCD01017269;AGCD01017270;GBDI01081430;XM_005381493;XM_013512510;XM_013512511 XP_005381550;XP_013367964;XP_013367965 MODEL 151707889 mirna MIRLET7G microRNA let-7g 8768992 protein-coding Dhfr dihydrofolate reductase ENCODES a protein that exhibits dihydrofolate reductase activity (ortholog); dihydrofolic acid binding (ortholog); folate reductase activity (ortholog); INVOLVED IN axon regeneration (ortholog); dihydrofolate metabolic process (ortholog); folic acid metabolic process (ortholog); PARTICIPATES IN altered folate cycle metabolic pathway; dopa responsive dystonia pathway; folate cycle metabolic pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); autistic disorder (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955418 29274170 29283028 + 102014049 AGCD01019455;GBCE01039261;XM_005382314 XP_005382371 MODEL 9007007 pseudo LOC102007361 uncharacterized LOC102007361 NW_004955515 1742608 1754797 - 102007361 AGCD01067234;AGCD01067235 MODEL 8887401 protein-coding LOC102021380 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related-like NW_004955514 3946950 3967642 - 102021380 AGCD01067122;AGCD01067123;GBCB01073188;XM_005408817;XM_013506852;XM_013506853 XP_005408874;XP_013362306;XP_013362307 MODEL 9023152 ncrna LOC102025099 uncharacterized LOC102025099 NW_004955411 35546106 35572131 - 102025099 AGCD01012440;XR_259954 MODEL 8964855 protein-coding Ppp2r2c protein phosphatase 2 regulatory subunit Bgamma ASSOCIATED WITH Emphysema (ortholog) NW_004955514 3863461 3893026 + 102009975 AGCD01067119;GBDF01253553;XM_005408859 XP_005408916 MODEL 9000228 protein-coding LOC102015346 uncharacterized LOC102015346 NW_004955534 1116230 1117449 - 102015346 AGCD01070487;GBDF01063886;XM_013507701 XP_013363155 MODEL 8811891 pseudo LOC102005936 tyrosine-protein phosphatase non-receptor type 2-like NW_004955483 1097670 1098910 - 102005936 AGCD01057640 MODEL 8764778 protein-coding Mis12 MIS12 kinetochore complex component INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); chromosome segregation (ortholog); kinetochore assembly (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 25 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN kinetochore (ortholog); MIS12/MIND type complex (ortholog); nucleus (ortholog) NW_004955467 10837570 10842131 + 102028945 AGCD01051586;GBDF01159192;XM_005399649;XM_005399650 XP_005399706;XP_005399707 MODEL 8797586 protein-coding Lap3 leucine aminopeptidase 3 ENCODES a protein that exhibits peptidase activity (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); FOUND IN mitochondrion (ortholog); trans-Golgi network (ortholog) NW_004955480 6565071 6588682 - 102008625 AGCD01056686;GBDF01080531;XM_005402497 XP_005402554 MODEL 8806175 protein-coding LOC102025102 uncharacterized LOC102025102 NW_004955466 10805473 10806476 + 102025102 AGCD01051077;GBDF01213392;XM_005399201 XP_005399258 MODEL 8732307 protein-coding Taok3 TAO kinase 3 ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); transferase activity (ortholog); INVOLVED IN DNA damage response (ortholog); MAPK cascade (ortholog); mitotic G2 DNA damage checkpoint signaling (ortholog); PARTICIPATES IN p38 MAPK signaling pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); prostate cancer (ortholog) NW_004955455 13020618 13207539 + 102019028 AGCD01046056;AGCD01046057;AGCD01046058;AGCD01046059;AGCD01046060;GBDF01250902;XM_005396533;XM_005396534 XP_005396590;XP_005396591 MODEL 8785343 protein-coding LOC102023020 sodium-dependent multivitamin transporter-like NW_004955469 9131732 9133911 - 102023020 AGCD01052491;AGCD01052492;GBCQ01139319;XM_005400465;XM_005400466 XP_005400522;XP_005400523 MODEL 8841428 ncrna LOC102010025 uncharacterized LOC102010025 NW_004955407 17318652 17322814 + 102010025 AGCD01007247;GBDF01021440;XR_259568 MODEL 9043837 ncrna LOC102012371 uncharacterized LOC102012371 NW_004955443 10531041 10537221 - 102012371 AGCD01038378;GBBH01158501;XR_001235449 MODEL 8728399 ncrna LOC102015347 uncharacterized LOC102015347 NW_004955541 3245231 3247302 + 102015347 AGCD01071440;GBDF01187123;XR_001232133;XR_264844 MODEL 8933391 ncrna LOC102025104 uncharacterized LOC102025104 NW_004955467 4852986 4885256 + 102025104 AGCD01051375;XR_001236831;XR_263334 MODEL 8900453 pseudo LOC102026071 glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial pseudogene NW_004955405 29962101 29963733 - 102026071 AGCD01005263 MODEL 8880585 pseudo LOC102010026 transmembrane protein 50A pseudogene NW_004955455 8395596 8396361 - 102010026 AGCD01045888 MODEL 8749961 protein-coding Sars1 seryl-tRNA synthetase 1 ENCODES a protein that exhibits enzyme binding (ortholog); molecular adaptor activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cytoplasmic translation (ortholog); negative regulation of angiogenesis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); autistic disorder (ortholog); coronary artery disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955435 12642485 12659833 + 102025160 AGCD01033160;AGCD01033161;GBDF01045746;XM_005388851;XM_013516442 XP_005388908;XP_013371896 MODEL 8812671 protein-coding Tap1 transporter 1, ATP binding cassette subfamily B member ENCODES a protein that exhibits ABC-type peptide antigen transporter activity (ortholog); ADP binding (ortholog); ATP binding (ortholog); INVOLVED IN antigen processing and presentation of endogenous peptide antigen via MHC class I (ortholog); cytosol to endoplasmic reticulum transport (ortholog); defense response (ortholog); ASSOCIATED WITH allergic disease (ortholog); ankylosing spondylitis (ortholog); asthma (ortholog); FOUND IN centriolar satellite (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955437 1504549 1511110 - 102009988 AGCD01034212;GBBH01001146;GBDJ01003324;XM_013516935 XP_013372389 MODEL 8905416 protein-coding LOC102024063 neutrophil gelatinase-associated lipocalin-like NW_004955570 492312 495847 + 102024063 AGCD01074730;XM_005413637 XP_005413694 MODEL 9027619 protein-coding LOC102003362 60S ribosomal protein L29-like NW_004955505 6929524 6988367 + 102003362 AGCD01065190;AGCD01065191;AGCD01065192;AGCD01065193;XM_005407177 XP_005407234 MODEL 8801985 protein-coding Xrra1 X-ray radiation resistance associated 1 INVOLVED IN response to X-ray (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955414 16825118 16893518 + 102004057 AGCD01015225;AGCD01015226;AGCD01015227;GBDF01005769;XM_005379906;XM_005379907;XM_005379909;XM_013511844 XP_005379963;XP_005379964;XP_005379966;XP_013367298 MODEL 8708333 ncrna LOC102008854 uncharacterized LOC102008854 NW_004955418 25551560 25572621 - 102008854 AGCD01019367;GBDF01180351;XR_260584 MODEL 8967925 protein-coding Eri2 ERI1 exoribonuclease family member 2 ASSOCIATED WITH COVID-19 (ortholog) NW_004955493 96758 103669 - 102029981 AGCD01060838;GBCC01027768;XM_005405034;XM_013504827 XP_005405091;XP_013360281 MODEL 8894907 protein-coding Tnfrsf21 TNF receptor superfamily member 21 INVOLVED IN adaptive immune response (ortholog); apoptotic process (ortholog); axonal fasciculation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Gliosis (ortholog); Prostatic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955437 11877051 11915220 - 102021278 AGCD01034587;GBCE01169389;GBDK01322050;XM_013517103 XP_013372557 MODEL 8942158 pseudo LOC102005937 olfactory receptor 2S2-like NW_004955419 21770973 21771933 + 102005937 AGCD01020283 MODEL 8729841 protein-coding Ppp2r2d protein phosphatase 2 regulatory subunit Bdelta ENCODES a protein that exhibits enzyme-substrate adaptor activity (ortholog); protein phosphatase regulator activity (ortholog); INVOLVED IN regulation of chromosome segregation (ortholog); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); FOUND IN protein phosphatase type 2A complex (ortholog) NW_004955477 9571974 9611076 + 102022283 AGCD01055677;GBDF01108912;XM_005402033;XM_005402034 XP_005402090;XP_005402091 MODEL 8865501 protein-coding LOC102003363 olfactory receptor 8K5-like NW_004955511 1379800 1390219 + 102003363 AGCD01066366;XM_005407957;XM_005407958;XM_005407959 XP_005408014;XP_005408015;XP_005408016 MODEL 8926325 protein-coding Mis18a MIS18 kinetochore protein A ENCODES a protein that exhibits identical protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN CENP-A containing chromatin assembly (ortholog); chromosome segregation (ortholog); heterochromatin formation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); Familial Platelet Disorder with Associated Myeloid Malignancy (ortholog); FOUND IN CENP-A recruiting complex (ortholog); chromosome, centromeric region (ortholog); cytosol (ortholog) NW_004955407 31799537 31813897 - 102014869 AGCD01007662;GBDJ01404397;XM_005375663 XP_005375720 MODEL 39132658 snrna U6 U6 spliceosomal RNA 8728972 pseudo LOC102012373 ubiquitin-conjugating enzyme E2 Q1 pseudogene NW_004955444 9094091 9096386 + 102012373 AGCD01038958 MODEL 8922317 protein-coding Bmp10 bone morphogenetic protein 10 ENCODES a protein that exhibits growth factor activity (ortholog); hormone activity (ortholog); receptor serine/threonine kinase binding (ortholog); INVOLVED IN activin receptor signaling pathway (ortholog); adult heart development (ortholog); atrial cardiac muscle tissue morphogenesis (ortholog); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); Fibrosis (ortholog); Left Ventricular Hypertrophy (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular space (ortholog) NW_004955424 16124526 16130723 + 102018743 AGCD01024738;XM_005385656 XP_005385713 MODEL 39132783 snrna U6 U6 spliceosomal RNA 8862403 ncrna LOC102015348 uncharacterized LOC102015348 NW_004955438 17034208 17055292 - 102015348 AGCD01035429;AGCD01035430;GBDF01277238;XR_261941 MODEL 10119420 protein-coding LOC106150040 translation initiation factor IF-2-like NW_004955406 20155524 20156803 + 106150040 AGCD01006100;GBDF01152766;XM_013521368 XP_013376822 MODEL 39132659 snrna U6 U6 spliceosomal RNA 9027736 ncrna LOC102010035 uncharacterized LOC102010035 NW_004955460 30819 34048 + 102010035 AGCD01048329;GBDF01187342;XR_263021 MODEL 8917079 protein-coding LOC102024075 protein mago nashi homolog NW_004955403 475609 476239 - 102024075 AGCD01001693;XM_005373213 XP_005373270 MODEL 9003011 pseudo LOC102012374 methyl-CpG-binding domain protein 3-like 2 pseudogene NW_004955563 759987 761698 + 102012374 AGCD01074086;XM_005413203 MODEL 8938232 pseudo LOC102015349 zinc finger CCCH domain-containing protein 15-like NW_004955543 941013 942296 + 102015349 AGCD01071608 MODEL 8782713 protein-coding Slc16a13 solute carrier family 16 member 13 ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog) NW_004955467 9894833 9900295 - 102006645 AGCD01051535;GBDJ01261667;XM_005399572;XM_013522101;XM_013522102 XP_005399629;XP_013377555;XP_013377556 MODEL 8820525 pseudo LOC102017124 histone H3.3-like NW_004955416 21843586 21844067 - 102017124 AGCD01017517 MODEL 8732715 ncrna LOC102003115 uncharacterized LOC102003115 NW_004955470 2942258 2951897 + 102003115 AGCD01052684;AGCD01052685;AGCD01052686;GBDF01056049;XR_263459 MODEL 8710773 pseudo LOC102024077 olfactory receptor-like protein OLF4 NW_004955626 120729 121640 + 102024077 AGCD01077468 MODEL 9039238 protein-coding Klk12 kallikrein related peptidase 12 ENCODES a protein that exhibits peptidase activity (ortholog); serine-type peptidase activity (ortholog); INVOLVED IN proteolysis (ortholog) NW_004955558 1454512 1459105 + 102022130 AGCD01073444;GBDI01212460;XM_005412716;XM_013508918;XM_013508919 XP_005412773;XP_013364372;XP_013364373 MODEL 8819848 protein-coding Usp24 ubiquitin specific peptidase 24 ASSOCIATED WITH Dwarfism (ortholog) NW_004955464 4273068 4423609 + 102022794 AGCD01049986;AGCD01049987;AGCD01049988;AGCD01049989;AGCD01049990;GBDF01124734;XM_005398504;XM_013521671;XM_013521672 XP_005398561;XP_013377125;XP_013377126 MODEL 8922393 protein-coding Neurl3 neuralized E3 ubiquitin protein ligase 3 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN positive regulation of proteasomal protein catabolic process (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); schizophrenia (ortholog); FOUND IN cytoplasm (ortholog) NW_004955470 3920432 3926069 - 102026519 AGCD01052712;AGCD01052713;GBDF01277265;GBDK01283395;XM_005400830 XP_005400887 MODEL 8929512 protein-coding Shc1 SHC adaptor protein 1 ENCODES a protein that exhibits ephrin receptor binding (ortholog); epidermal growth factor binding (ortholog); epidermal growth factor receptor binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); angiogenesis (ortholog); animal organ regeneration (ortholog); PARTICIPATES IN brain-derived neurotrophic factor signaling pathway; epidermal growth factor/neuregulin signaling pathway; erythropoietin signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); FOUND IN endosome membrane (ortholog); plasma membrane (ortholog); Shc-EGFR complex (ortholog) NW_004955545 1468391 1479209 - 102015985 AGCD01071856;GBDF01158976;XM_005411532;XM_005411534 XP_005411589;XP_005411591 MODEL 8852130 ncrna LOC102025106 uncharacterized LOC102025106 NW_004955413 19310741 19316830 + 102025106 AGCD01014198;XR_260088 MODEL 10284698 ncrna LOC106149197 uncharacterized LOC106149197 NW_004955439 21199733 21200875 + 106149197 AGCD01036146;GBDI01345563;XR_001235201 MODEL 8705962 protein-coding Sec11c SEC11 homolog C, signal peptidase complex subunit ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); INVOLVED IN signal peptide processing (ortholog); ASSOCIATED WITH immunodeficiency 12 (ortholog); isolated microphthalmia 3 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); signal peptidase complex (ortholog) NW_004955402 43317038 43333816 + 102013128 AGCD01001070;GBDI01007992;XM_005372997 XP_005373054 MODEL 9015513 protein-coding LOC102003117 olfactory receptor 51B6-like NW_004955414 21261870 21262817 + 102003117 AGCD01015411;XM_005380081 XP_005380138 MODEL 9054283 protein-coding Klk15 kallikrein related peptidase 15 NW_004955559 450472 455179 + 102011596 AGCD01073586;XM_013508951 XP_013364405 MODEL 8989733 pseudo LOC102027107 phosphatase and actin regulator 4-like NW_004955435 14348496 14352309 - 102027107 AGCD01033228 MODEL 8710706 pseudo LOC102018352 PEST proteolytic signal-containing nuclear protein pseudogene NW_004955597 71046 72218 - 102018352 AGCD01076536;XR_265145 MODEL 8718847 protein-coding Tap2 transporter 2, ATP binding cassette subfamily B member ENCODES a protein that exhibits ABC-type peptide antigen transporter activity (ortholog); ADP binding (ortholog); ATP binding (ortholog); INVOLVED IN antigen processing and presentation of endogenous peptide antigen via MHC class I (ortholog); antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent (ortholog); antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); Alzheimer's disease (ortholog); ankylosing spondylitis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955437 1480217 1499032 - 102022851 AGCD01034211;AGCD01034212;GBDK01022859;XM_013516933;XM_013516934 XP_013372387;XP_013372388 MODEL 8710505 pseudo LOC102008855 S-formylglutathione hydrolase pseudogene NW_004955483 8647789 8648240 - 102008855 AGCD01057841 MODEL 8901826 ncrna LOC102010037 uncharacterized LOC102010037 NW_004955460 11260440 11300237 + 102010037 AGCD01048631;GBDF01076385;XR_001236536;XR_263060 MODEL 8910313 ncrna LOC102007697 uncharacterized LOC102007697 NW_004955438 985521 989683 - 102007697 AGCD01034966;GBDF01049911;XR_001235136 MODEL 8708767 ncrna LOC102023750 uncharacterized LOC102023750 NW_004955562 409617 461561 - 102023750 AGCD01073925;GBDK01125417;XR_001232360;XR_001232361;XR_001232362;XR_001232363;XR_001232364;XR_001232365 MODEL 8859249 protein-coding Spink1 serine peptidase inhibitor Kazal type 1 ENCODES a protein that exhibits peptidase inhibitor activity (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN cellular response to peptide hormone stimulus (ortholog); negative regulation of calcium ion import (ortholog); negative regulation of nitric oxide mediated signal transduction (ortholog); ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); cervical adenocarcinoma (ortholog); Chronic Experimental Pancreatitis (ortholog); FOUND IN extracellular space (ortholog) NW_004955415 6328672 6378611 + 102010474 AGCD01016014;GBDF01155364;XM_005380652;XM_005380653 XP_005380709;XP_005380710 MODEL 8976222 protein-coding LOC102015351 olfactory receptor 4K3-like NW_004955550 529055 537383 + 102015351 AGCD01072509;XM_013508555 XP_013364009 MODEL 8813603 protein-coding Lrfn3 leucine rich repeat and fibronectin type III domain containing 3 INVOLVED IN regulation of presynapse assembly (ortholog); regulation of synaptic membrane adhesion (ortholog); synaptic membrane adhesion (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); COVID-19 (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN cell surface (ortholog); glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog) NW_004955468 2629781 2637497 - 102014997 AGCD01051829;GBDI01245282;XM_005399940 XP_005399997 MODEL 8803964 protein-coding Slc16a14 solute carrier family 16 member 14 NW_004955453 5011638 5044259 + 102029585 AGCD01044702;AGCD01044703;AGCD01044704;GBCE01147531;GBDJ01095780;XM_005395421 XP_005395478 MODEL 9012408 protein-coding Tnfrsf25 TNF receptor superfamily member 25 ASSOCIATED WITH autosomal recessive distal hereditary motor neuronopathy 4 (ortholog); chromosome 1p36 deletion syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN plasma membrane (ortholog) NW_004955486 6121906 6127060 + 102008322 AGCD01059108;GBDK01323168;XM_005404080;XM_005404081;XM_005404082;XM_005404083;XM_005404084;XM_013504289;XM_013504290 XP_005404137;XP_005404138;XP_005404139;XP_005404140;XP_005404141;XP_013359743;XP_013359744 MODEL 8887802 protein-coding LOC102003364 olfactory receptor 9I1-like NW_004955511 2907070 2908010 - 102003364 AGCD01066433;AGCD01066434;XM_013506378 XP_013361832 MODEL 8969023 pseudo LOC102024080 protein SGT1 homolog NW_004955403 2839891 2841159 + 102024080 AGCD01001739 MODEL 8934368 ncrna LOC102026073 uncharacterized LOC102026073 NW_004955455 3432716 3456703 - 102026073 AGCD01045626;AGCD01045627;AGCD01045628;GBDF01086767;XR_262819;XR_262820 MODEL 8779106 pseudo LOC102007698 V-type proton ATPase subunit F pseudogene NW_004955438 4435333 4445285 + 102007698 AGCD01035043;AGCD01035044 MODEL 8977932 protein-coding LOC102021383 zinc finger protein 490-like NW_004955524 1463424 1483515 + 102021383 AGCD01068752;AGCD01068753;AGCD01068754;GBCE01072813;GBDI01292151;XM_005409482 XP_005409539 MODEL 8789428 protein-coding Tfap2e transcription factor AP-2 epsilon ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog) NW_004955452 13666712 13682063 + 102021204 AGCD01044431;GBDF01136960;XM_005395152 XP_005395209 MODEL 9023794 protein-coding Xxylt1 xyloside xylosyltransferase 1 ENCODES a protein that exhibits magnesium ion binding (ortholog); manganese ion binding (ortholog); UDP-xylosyltransferase activity (ortholog); INVOLVED IN O-glycan processing (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); COVID-19 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955420 13781391 13921711 + 102025129 AGCD01020930;GBBH01063336;GBCB01101112;XM_013513577 XP_013369031 MODEL 39132660 snrna U6 U6 spliceosomal RNA 9031527 protein-coding Tnfrsf4 TNF receptor superfamily member 4 ENCODES a protein that exhibits tumor necrosis factor receptor activity (ortholog); INVOLVED IN cellular defense response (ortholog); inflammatory response (ortholog); negative regulation of activation-induced cell death of T cells (ortholog); ASSOCIATED WITH autoimmune disease (ortholog); cervical squamous cell carcinoma (ortholog); chromosome 1p36 deletion syndrome (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955486 9565424 9569836 + 102028422 AGCD01059191;GBCQ01013911;XM_005404247;XM_005404248 XP_005404304;XP_005404305 MODEL 8957601 pseudo LOC102024082 ATP-dependent RNA helicase DDX18 pseudogene NW_004955405 18903983 18905723 - 102024082 AGCD01005029 MODEL 8858183 protein-coding Slc16a2 solute carrier family 16 member 2 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); identical protein binding (ortholog); thyroid hormone transmembrane transporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); amino acid metabolic process (ortholog); hormone transport (ortholog); ASSOCIATED WITH Allan-Herndon-Dudley syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog) NW_004955562 305850 455764 + 102023963 AGCD01073921;AGCD01073922;AGCD01073923;AGCD01073924;AGCD01073925;GBDK01218930;XM_005413081 XP_005413138 MODEL 10115504 ncrna LOC106149198 uncharacterized LOC106149198 NW_004955439 7215648 7237027 - 106149198 AGCD01035763;GBDF01014020;XR_001235202 MODEL 8727530 protein-coding Laptm4a lysosomal protein transmembrane 4 alpha FOUND IN Golgi apparatus (ortholog); late endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955469 2604464 2626835 - 102012419 AGCD01052279;AGCD01052280;GBBH01004233;XM_005400342 XP_005400399 MODEL 8993516 pseudo LOC102012375 stathmin-2 pseudogene NW_004955568 690849 691813 + 102012375 AGCD01074525;XM_005413457 MODEL 9011363 pseudo LOC102021386 serine/threonine-protein phosphatase 4 regulatory subunit 3B pseudogene NW_004955531 3483082 3485616 + 102021386 AGCD01070075;XM_005410142 MODEL 8750718 ncrna LOC102020473 uncharacterized LOC102020473 NW_004955430 7650285 7652006 - 102020473 AGCD01029362;GBDF01224068;XR_261418;XR_261419 MODEL 39132661 snrna U6 U6 spliceosomal RNA 8972080 protein-coding Xylb xylulokinase ENCODES a protein that exhibits D-xylulokinase activity (ortholog); INVOLVED IN xylulose metabolic process (ortholog); ASSOCIATED WITH Brugada syndrome (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Immunodeficiency 68 (ortholog) NW_004955427 25492505 25528674 - 102026893 AGCD01027543;AGCD01027544;GBBH01016241;GBCQ01008840;XM_013515188 XP_013370642 MODEL 8836150 protein-coding LOC102010041 coatomer subunit gamma-2 NW_004955410 36982233 37086997 + 102010041 AGCD01011442;AGCD01011443;AGCD01011444;AGCD01011445;GBDF01004497;XM_005377554;XM_013510640 XP_005377611;XP_013366094 MODEL 9059308 pseudo LOC102012379 60S ribosomal protein L6-like NW_004955573 953680 960330 - 102012379 AGCD01075010 MODEL 8818691 protein-coding Slc16a3 solute carrier family 16 member 3 ENCODES a protein that exhibits lactate transmembrane transporter activity (ortholog); lactate:proton symporter activity (ortholog); pyruvate transmembrane transporter activity (ortholog); INVOLVED IN lactate transmembrane transport (ortholog); plasma membrane lactate transport (ortholog); pyruvate catabolic process (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); generalized epilepsy (ortholog); Stomach Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); lateral plasma membrane (ortholog) NW_004955506 935783 945014 - 102013105 AGCD01065241;GBBH01139889;XM_005407207;XM_013506039;XM_013506040;XM_013506041;XM_013506042 XP_005407264;XP_013361493;XP_013361494;XP_013361495;XP_013361496 MODEL 8722933 ncrna LOC102021390 uncharacterized LOC102021390 NW_004955539 3561889 3568046 + 102021390 AGCD01071257;GBDI01058745;XR_264814 MODEL 39132662 snrna U6 U6 spliceosomal RNA 8701984 protein-coding Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 INVOLVED IN regulation of postsynaptic density assembly (ortholog); regulation of presynapse assembly (ortholog); synaptic membrane adhesion (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); immunodeficiency 90 (ortholog); intellectual disability (ortholog); FOUND IN cell surface (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog) NW_004955422 18524786 18527916 - 102027866 AGCD01022950;GBBH01150721;XM_005384362 XP_005384419 MODEL 10225408 ncrna LOC106150041 uncharacterized LOC106150041 NW_004955462 2873492 2875878 - 106150041 AGCD01049189;GBBH01049625;XR_001236595;XR_001236596 MODEL 8975176 protein-coding Xylt1 xylosyltransferase 1 ENCODES a protein that exhibits protein xylosyltransferase activity (ortholog); INVOLVED IN cellular response to heat (ortholog); chondroitin sulfate proteoglycan biosynthetic process (ortholog); embryonic skeletal system development (ortholog); ASSOCIATED WITH Desbuquois dysplasia (ortholog); Desbuquois Dysplasia 1 (ortholog); Desbuquois Dysplasia 2 (ortholog); FOUND IN extracellular space (ortholog); Golgi apparatus (ortholog); Golgi cis cisterna (ortholog) NW_004955442 1787338 2042523 + 102030008 AGCD01037453;GBDI01292471;XM_013517878 XP_013373332 MODEL 8985873 protein-coding LOC102025110 taste receptor type 2 member 14-like NW_004955413 8203676 8204596 - 102025110 AGCD01013854;XM_005379632 XP_005379689 MODEL 8875471 protein-coding LOC102010044 ribosomal large subunit pseudouridine synthase B-like NW_004955412 5260904 5261677 - 102010044 AGCD01012623;GBDF01280111;GBDF01280112;XM_013511125 XP_013366579 MODEL 9016803 protein-coding LOC102019573 olfactory receptor 6C6-like NW_004955458 2670696 2671655 - 102019573 AGCD01047240;XM_005397499 XP_005397556 MODEL 8735962 pseudo LOC102026074 histone-lysine N-methyltransferase SUV39H2 pseudogene NW_004955406 24704624 24705263 - 102026074 AGCD01006206 MODEL 39132663 snrna U6 U6 spliceosomal RNA 9033701 ncrna LOC102005939 uncharacterized LOC102005939 NW_004955420 14870439 14874125 + 102005939 AGCD01020956;GBDI01175768;XR_001233663;XR_001233664;XR_001233665 MODEL 8794174 protein-coding Eri3 ERI1 exoribonuclease family member 3 ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955464 13855581 13984598 + 102017107 AGCD01050294;AGCD01050295;AGCD01050296;AGCD01050297;AGCD01050298;GBBH01114559;XM_005398762;XM_005398764;XM_013521692;XM_013521693;XM_013521694;XM_013521696;XM_013521697 XP_005398819;XP_005398821;XP_013377146;XP_013377147;XP_013377148;XP_013377150;XP_013377151 MODEL 8932075 pseudo LOC102024690 disabled homolog 2 pseudogene NW_004955490 1872306 1876904 + 102024690 AGCD01060120 MODEL 8895032 protein-coding Klk5 kallikrein related peptidase 5 ENCODES a protein that exhibits peptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN positive regulation of antibacterial peptide production (ortholog); positive regulation of G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN epidermal lamellar body (ortholog); extracellular space (ortholog) NW_004955558 1512478 1520522 + 102025182 AGCD01073445;GBCC01014879;XM_005412727 XP_005412784 MODEL 9056834 protein-coding LOC102025111 T-cell ecto-ADP-ribosyltransferase 1-like NW_004955414 18887480 18897593 - 102025111 AGCD01015292;GBDJ01402723;XM_005379987 XP_005380044 MODEL 8824276 protein-coding LOC102019576 uncharacterized LOC102019576 NW_004955460 10273715 10276083 + 102019576 AGCD01048576;GBBH01064357;XM_013521115 XP_013376569 MODEL 8945037 protein-coding Gpr75 G protein-coupled receptor 75 ENCODES a protein that exhibits C-C chemokine receptor activity (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN chemokine-mediated signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog) NW_004955441 19576490 19579447 - 102004010 AGCD01037354;XM_005391028 XP_005391085 MODEL 8929534 protein-coding LOC102017127 histone H2B type 1 NW_004955483 851209 851809 - 102017127 AGCD01057634;XM_005403297 XP_005403354 MODEL 39132664 snrna U6 U6 spliceosomal RNA 8754216 protein-coding LOC102015352 olfactory receptor 10G3 ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog) NW_004955550 2295101 2296367 - 102015352 AGCD01072621;XM_005412125 XP_005412182 MODEL 9066269 protein-coding Dhodh dihydroorotate dehydrogenase (quinone) ENCODES a protein that exhibits dihydroorotase activity (ortholog); dihydroorotate dehydrogenase (quinone) activity (ortholog); dihydroorotate dehydrogenase activity (ortholog); INVOLVED IN 'de novo' pyrimidine nucleobase biosynthetic process (ortholog); 'de novo' UMP biosynthetic process (ortholog); female pregnancy (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; de novo pyrimidine biosynthetic pathway; dihydropyrimidinase deficiency pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); beta thalassemia (ortholog); erythroleukemia (ortholog); FOUND IN cytosol (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955484 4699743 4713466 + 102017238 AGCD01058230;GBDJ01191379;XM_005403527 XP_005403584 MODEL 8930427 protein-coding Sars2 seryl-tRNA synthetase 2, mitochondrial ASSOCIATED WITH HUPRA Syndrome (ortholog); maturity-onset diabetes of the young type 1 (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN mitochondrion (ortholog) NW_004955468 603778 613475 + 102003009 AGCD01051719;GBCQ01127049;XM_005399804 XP_005399861 MODEL 8729472 pseudo LOC102009251 heterogeneous nuclear ribonucleoprotein D-like pseudogene NW_004955455 3817536 3818804 + 102009251 AGCD01045653;XR_262827 MODEL 8774820 protein-coding LOC102025112 olfactory receptor 51T1 ASSOCIATED WITH delta beta-thalassemia (ortholog) NW_004955414 20490013 20494165 + 102025112 AGCD01015376;XM_005380474 XP_005380531 MODEL 8862217 protein-coding Usp25 ubiquitin specific peptidase 25 ENCODES a protein that exhibits ATPase binding (ortholog); cysteine-type deubiquitinase activity (ortholog); deubiquitinase activity (ortholog); INVOLVED IN I-kappaB phosphorylation (ortholog); immune response (ortholog); interleukin-17-mediated signaling pathway (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Idiopathic Generalized Epilepsy 19 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955407 17429299 17572138 + 102010228 AGCD01007252;AGCD01007253;AGCD01007254;AGCD01007255;AGCD01007256;AGCD01007257;AGCD01007258;AGCD01007259;GBCB01007190;GBDF01085780;XM_005375571;XM_005375572;XM_005375573;XM_005375575;XM_005375576;XM_013503834 XP_005375628;XP_005375629;XP_005375630;XP_005375632;XP_005375633;XP_013359288 MODEL 39132665 snrna U6 U6 spliceosomal RNA 8927634 protein-coding Shc2 SHC adaptor protein 2 NW_004955495 7216806 7236056 + 102017680 AGCD01062125;GBCB01098221;GBDF01153002;XM_013505336 XP_013360790 MODEL 8717372 pseudo LOC102015355 heat shock cognate 71 kDa protein pseudogene NW_004955444 12513405 12515314 - 102015355 AGCD01039075 MODEL 9060294 ncrna LOC102019577 uncharacterized LOC102019577 NW_004955462 2824711 2834104 - 102019577 AGCD01049187;AGCD01049188;GBDJ01047276;XR_263091 MODEL 8940189 protein-coding Idua alpha-L-iduronidase ENCODES a protein that exhibits L-iduronidase activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); adult walking behavior (ortholog); bone development (ortholog); ASSOCIATED WITH calcium oxalate nephrolithiasis (ortholog); Calcium Oxalate Nephrolithiasis 1 (ortholog); cherubism (ortholog); FOUND IN extracellular space (ortholog); lysosomal lumen (ortholog); lysosome (ortholog) NW_004955514 474830 488007 + 102011470 AGCD01067011;AGCD01067012;GBCE01171800;GBDJ01321944;XM_005408686 XP_005408743 MODEL 8766547 protein-coding Sec13 SEC13 homolog, nuclear pore and COPII coat complex component ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); COPII-coated vesicle cargo loading (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); myoclonic-atonic epilepsy (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN COPII vesicle coat (ortholog); GATOR2 complex (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955561 1707053 1723715 - 102021488 AGCD01073864;GBBH01001853;XM_005413078;XM_013509095;XM_013509096 XP_005413135;XP_013364549;XP_013364550 MODEL 8997263 ncrna LOC102009252 uncharacterized LOC102009252 NW_004955407 17252038 17275416 - 102009252 AGCD01007243;AGCD01007244;AGCD01007245;AGCD01007246;GBDF01238047;XR_001231027;XR_259564;XR_259565 MODEL 8763963 protein-coding Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN eye photoreceptor cell differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN dopamine signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN protein phosphatase type 2A complex (ortholog) NW_004955501 2648017 2751999 - 102018949 AGCD01064091;GBDJ01199144;XM_005406782;XM_005406783;XM_013505755;XM_013505757 XP_005406839;XP_005406840;XP_013361209;XP_013361211 MODEL 10338211 ncrna LOC106146940 uncharacterized LOC106146940 NW_004955506 2779591 2780076 - 106146940 AGCD01065301;GBDK01198345;XR_001231591 MODEL 8726679 pseudo LOC102010047 nucleolar and spindle-associated protein 1 pseudogene NW_004955413 13435713 13437079 - 102010047 AGCD01014015 MODEL 8837713 protein-coding Usp26 ubiquitin specific peptidase 26 ENCODES a protein that exhibits deubiquitinase activity (ortholog); K48-linked deubiquitinase activity (ortholog); INVOLVED IN negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); regulation of androgen receptor signaling pathway (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Asthenozoospermia (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955473 1903865 1957747 + 102023257 AGCD01053895;AGCD01053896;AGCD01053897;AGCD01053898;GBDF01112598;XM_005401292 XP_005401349 MODEL 9011630 protein-coding Mis18bp1 MIS18 binding protein 1 ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); FOUND IN CENP-A recruiting complex (ortholog) NW_004955409 16704414 16751469 + 102006220 AGCD01009737;AGCD01009738;GBDF01188546;XM_005376853;XM_005376854;XM_013510343 XP_005376910;XP_005376911;XP_013365797 MODEL 8792174 protein-coding Spink2 serine peptidase inhibitor Kazal type 2 INVOLVED IN acrosome assembly (ortholog); fertilization (ortholog); male germ cell proliferation (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIk (ortholog); gastrointestinal stromal tumor (ortholog); spermatogenic failure 29 (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); neuron projection (ortholog) NW_004955447 14285248 14291835 + 102024175 AGCD01040998;GBDF01007420;XM_005392865 XP_005392922 MODEL 8762323 ncrna LOC102019579 uncharacterized LOC102019579 NW_004955464 1398380 1406201 + 102019579 AGCD01049949;GBDK01036642;XR_263190 MODEL 8718562 ncrna LOC102013560 uncharacterized LOC102013560 NW_004955443 13036898 13044656 - 102013560 AGCD01038459;GBDF01022385;XR_262205 MODEL 8756979 ncrna LOC102020478 uncharacterized LOC102020478 NW_004955432 13175096 13183461 + 102020478 AGCD01031006;GBDF01194976;XR_261525 MODEL 8761016 ncrna LOC102028797 uncharacterized LOC102028797 NW_004955437 3459086 3478431 + 102028797 AGCD01034319;AGCD01034320;GBDF01074660;XR_001235065;XR_261843 MODEL 10182818 protein-coding Ppp2r3b protein phosphatase 2 regulatory subunit B''beta ENCODES a protein that exhibits calcium-dependent protein serine/threonine phosphatase activity (ortholog); chromatin binding (ortholog); protein phosphatase regulator activity (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); negative regulation of G1/S transition of mitotic cell cycle (ortholog); protein dephosphorylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN cilium (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955499 596146 606079 - 106146859 AGCD01063247;AGCD01063248;AGCD01063249;AGCD01063250;AGCD01063251;GBCB01020000;GBDK01183067;XM_013505589 XP_013361043 MODEL 8873020 protein-coding Bmp15 bone morphogenetic protein 15 INVOLVED IN ovarian cumulus expansion (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); FOUND IN cytoplasm (ortholog) NW_004955543 2304112 2345376 + 102018029 AGCD01071649;AGCD01071650;GBCE01042542;XM_005411357;XM_005411359;XM_005411360;XM_013508137;XM_013508138;XM_013508139;XM_013508140 XP_005411414;XP_005411416;XP_005411417;XP_013363591;XP_013363592;XP_013363593;XP_013363594 MODEL 8826122 protein-coding Misp mitotic spindle positioning ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN cell migration (ortholog); establishment of centrosome localization (ortholog); establishment of mitotic spindle orientation (ortholog); ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog); FOUND IN actin filament (ortholog); cortical actin cytoskeleton (ortholog); focal adhesion (ortholog) NW_004955495 7034664 7044886 - 102021255 AGCD01062114;AGCD01062115;GBCE01151437;XM_013505341;XM_013505342;XM_013505343;XM_013505344 XP_013360795;XP_013360796;XP_013360797;XP_013360798 MODEL 8983144 pseudo LOC102017129 arylacetamide deacetylase-like 4 NW_004955486 847089 892899 - 102017129 AGCD01058896;AGCD01058897;AGCD01058898;AGCD01058899;AGCD01058900;AGCD01058901;AGCD01058902;AGCD01058903;AGCD01058904 MODEL 8872807 protein-coding Spink4 serine peptidase inhibitor Kazal type 4 INVOLVED IN response to xenobiotic stimulus (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ortholog) NW_004955472 2406279 2415668 - 102010471 AGCD01053459;AGCD01053460;GBDI01140848;XM_005401107;XM_013522954 XP_005401164;XP_013378408 MODEL 8835822 ncrna LOC102025114 uncharacterized LOC102025114 NW_004955415 29659897 29684279 - 102025114 AGCD01016654;GBCE01080812;XR_001233189;XR_001233190;XR_260322 MODEL 9063648 ncrna LOC102008856 uncharacterized LOC102008856 NW_004955484 4129624 4136398 + 102008856 AGCD01058202;GBDF01220583;XR_001231058;XR_001231059;XR_001231060;XR_001231061;XR_263884 MODEL 39133009 snrna U1 U1 spliceosomal RNA 10378169 ncrna LOC106149199 uncharacterized LOC106149199 NW_004955439 18743665 18751613 - 106149199 AGCD01036065;GBCB01120419;XR_001235206 MODEL 9041373 pseudo LOC102023752 mitochondrial import inner membrane translocase subunit Tim10 pseudogene NW_004955568 1613428 1613801 - 102023752 AGCD01074550 MODEL 39132784 snrna U6 U6 spliceosomal RNA 8723968 pseudo LOC102008864 solute carrier family 25 member 36-like NW_004955421 22468586 22469764 + 102008864 AGCD01022136 MODEL 10164887 ncrna LOC106146941 uncharacterized LOC106146941 NW_004955506 6324103 6327013 - 106146941 AGCD01065412;GBBH01135228;XR_001231592;XR_001231593 MODEL 39132868 snrna U1 U1 spliceosomal RNA 10086800 ncrna LOC106149200 uncharacterized LOC106149200 NW_004955439 11792506 11794425 + 106149200 AGCD01035923;XR_001235208 MODEL 8874029 protein-coding Usp27x ubiquitin specific peptidase 27 X-linked ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); K48-linked deubiquitinase activity (ortholog); INVOLVED IN defense response to virus (ortholog); positive regulation of apoptotic process (ortholog); positive regulation of type I interferon-mediated signaling pathway (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); genetic disease (ortholog) NW_004955543 1023931 1027048 + 102024278 AGCD01071611;GBDF01074416;XM_013508183 XP_013363637 MODEL 39132785 snrna U6 U6 spliceosomal RNA 8802540 pseudo LOC102027111 actin-binding LIM protein 3 pseudogene NW_004955535 179466 181094 - 102027111 AGCD01070612 MODEL 39132871 snrna U1 U1 spliceosomal RNA 8979419 protein-coding LOC102019580 serpin B9-like NW_004955465 10259941 10270945 + 102019580 AGCD01050506;GBDI01306837;XM_005398910;XM_013521828;XM_013521829 XP_005398967;XP_013377282;XP_013377283 MODEL 10366263 ncrna LOC106150042 uncharacterized LOC106150042 NW_004955462 7321314 7324829 - 106150042 AGCD01049300;XR_001236597 MODEL 10184211 ncrna LOC106149201 uncharacterized LOC106149201 NW_004955439 921675 925819 + 106149201 AGCD01035595;XR_001235209 MODEL 8779865 pseudo LOC102007362 ATM interactor pseudogene NW_004955516 35910 38266 + 102007362 AGCD01067367 MODEL 8970010 protein-coding Tnfrsf6b TNF receptor superfamily member 6b ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); autosomal recessive dyskeratosis congenita 5 (ortholog); benign familial infantile seizures 6 (ortholog) NW_004955528 529817 531577 - 102007051 AGCD01069537;GBCE01057126;XM_005409952 XP_005410009 MODEL 39132786 snrna U6 U6 spliceosomal RNA 8774905 protein-coding Tapbp TAP binding protein ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein folding chaperone (ortholog); TAP complex binding (ortholog); INVOLVED IN antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent (ortholog); defense response (ortholog); MHC class I protein complex assembly (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); MHC class I deficiency (ortholog); MHC CLASS I DEFICIENCY 3 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog); MHC class I peptide loading complex (ortholog) NW_004955437 1860057 1865645 - 102003584 AGCD01034240;GBDI01163633;GBDK01008349;XM_005389485 XP_005389542 MODEL 8857549 protein-coding Usp28 ubiquitin specific peptidase 28 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); deubiquitinase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to UV (ortholog); DNA damage checkpoint signaling (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); prostate cancer (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); protein-containing complex (ortholog) NW_004955412 15425136 15469819 - 102010350 AGCD01012873;AGCD01012874;GBCB01023935;GBCE01098002;XM_005378149 XP_005378206 MODEL 8847881 protein-coding Ier2 immediate early response 2 INVOLVED IN cell motility (ortholog); neuron differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955415 32159762 32161530 + 102030303 AGCD01016712;GBDK01079819;XM_005381057 XP_005381114 MODEL 8843523 protein-coding LOC102025115 heat shock factor protein 3-like NW_004955475 5498275 5555299 - 102025115 AGCD01054919;AGCD01054920;AGCD01054921;GBDF01165225;XM_013502808 XP_013358262 MODEL 8816460 protein-coding LOC102007363 monocarboxylate transporter 1-like NW_004955435 16195389 16213361 - 102007363 AGCD01033300;AGCD01033301;GBDF01134218;XM_005388971 XP_005389028 MODEL 9027040 protein-coding Klk6 kallikrein related peptidase 6 ENCODES a protein that exhibits peptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN positive regulation of G protein-coupled receptor signaling pathway (ortholog); regulation of neuron projection development (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); breast carcinoma (ortholog); demyelinating disease (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955558 1501806 1509461 + 102024619 AGCD01073445;GBCB01093384;XM_005412725;XM_013508920 XP_005412782;XP_013364374 MODEL 39132787 snrna U6 U6 spliceosomal RNA 8744163 protein-coding LOC102010049 olfactory receptor 52H1-like NW_004955414 21628748 21631134 + 102010049 AGCD01015424;XM_005380100 XP_005380157 MODEL 8853150 protein-coding Gpr82 G protein-coupled receptor 82 INVOLVED IN adipose tissue development (ortholog); energy homeostasis (ortholog); response to food (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); prostate cancer (ortholog) NW_004955565 1075457 1080418 - 102027242 AGCD01074303;GBCE01020711;XM_005413248;XM_013509211 XP_005413305;XP_013364665 MODEL 9059451 protein-coding Tapbpl TAP binding protein like ENCODES a protein that exhibits MHC class I protein complex binding (ortholog); INVOLVED IN negative regulation of antigen processing and presentation of peptide antigen via MHC class I (ortholog); peptide antigen assembly with MHC class I protein complex (ortholog); ASSOCIATED WITH congenital myasthenic syndrome (ortholog); Congenital Myasthenic Syndrome 25 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955413 4108044 4116413 + 102019490 AGCD01013600;GBDK01069809;XM_005378785;XM_005378786;XM_005378787;XM_013511329 XP_005378842;XP_005378843;XP_005378844;XP_013366783 MODEL 9039057 protein-coding LOC102013566 uncharacterized LOC102013566 NW_004955448 17433598 17833238 + 102013566 AGCD01041719;AGCD01041720;AGCD01041721;AGCD01041722;AGCD01041723;AGCD01041724;AGCD01041725;AGCD01041726;GBDI01112397;XM_005393168;XM_013518622;XM_013518623;XR_001235774;XR_001235775;XR_001235776;XR_001235777;XR_001235778;XR_001235779 XP_005393225;XP_013374076;XP_013374077 MODEL 8781163 protein-coding LOC102003118 olfactory receptor 2AG1-like NW_004955414 22492961 22493908 - 102003118 AGCD01015459;XM_005380176 XP_005380233 MODEL 8886702 protein-coding Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP INVOLVED IN mRNA splicing, via spliceosome (ortholog); positive regulation of cytotoxic T cell differentiation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN Cajal body (ortholog); catalytic step 2 spliceosome (ortholog); Golgi apparatus (ortholog) NW_004955422 19360641 19370623 - 102022394 AGCD01023002;GBCE01006992;XM_005384438 XP_005384495 MODEL 8712147 pseudo LOC102018014 endothelial differentiation-related factor 1 pseudogene NW_004955518 3788942 3789430 - 102018014 AGCD01067809 MODEL 39132666 snrna U6 U6 spliceosomal RNA 8994240 ncrna LOC102017137 uncharacterized LOC102017137 NW_004955423 5582136 5583107 + 102017137 AGCD01023564;GBDF01189480;XR_260955 MODEL 8744817 pseudo LOC102010056 protein FAM136A-like NW_004955416 11217210 11218822 - 102010056 AGCD01017181 MODEL 8905949 protein-coding Misp3 MISP family member 3 NW_004955415 32777456 32780734 + 102016471 AGCD01016732;AGCD01016733;GBBH01064686;GBCE01154128;XM_013512097 XP_013367551 MODEL 39132873 snrna U1 U1 spliceosomal RNA 8731555 protein-coding Laptm4b lysosomal protein transmembrane 4 beta ENCODES a protein that exhibits ceramide binding (ortholog); kinase binding (ortholog); phosphatidylinositol bisphosphate binding (ortholog); INVOLVED IN endosome organization (ortholog); endosome transport via multivesicular body sorting pathway (ortholog); negative regulation of lysosomal protein catabolic process (ortholog); FOUND IN cell projection (ortholog); early endosome (ortholog); endosome (ortholog) NW_004955417 13574493 13625669 + 102015955 AGCD01018188;AGCD01018189;GBBH01003692;GBDF01010424;XM_013512773 XP_013368227 MODEL 9021535 protein-coding Erich1 glutamate rich 1 ASSOCIATED WITH Recombinant Chromosome 8 Syndrome (ortholog) NW_004955403 58508113 58580682 + 102024638 AGCD01003183;AGCD01003184;AGCD01003185;AGCD01003186;GBCQ01178907;GBDJ01117475;XM_013515049 XP_013370503 MODEL 8885877 pseudo LOC102019582 angio-associated migratory cell protein-like NW_004955466 6148040 6157739 + 102019582 AGCD01050911 MODEL 10073919 protein-coding LOC106150043 uncharacterized LOC106150043 NW_004955462 7356342 7442399 + 106150043 AGCD01049302;AGCD01049303;AGCD01049304;AGCD01049305;GBDF01308303;XM_013521415;XM_013521416;XM_013521417;XM_013521418;XR_001236598;XR_001236599;XR_001236600;XR_001236601 XP_013376869;XP_013376870;XP_013376871;XP_013376872 MODEL 39132667 snrna U6 U6 spliceosomal RNA 8906537 protein-coding LOC102017138 olfactory receptor 19-like NW_004955495 8523068 8523988 - 102017138 AGCD01062213;XM_013505149 XP_013360603 MODEL 9031971 protein-coding LOC102022660 cilia- and flagella-associated protein 43-like NW_004955896 7887 11670 - 102022660 AGCD01078608;GBBH01035019;XM_013510203 XP_013365657 MODEL 8832499 protein-coding Ier3 immediate early response 3 INVOLVED IN DNA damage response (ortholog); glycolytic process (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); COVID-19 (ortholog); hypertension (ortholog); FOUND IN nucleus (ortholog) NW_004955583 730353 731301 - 102019341 AGCD01075858;GBDF01049433;XM_005414319 XP_005414376 MODEL 8756984 ncrna LOC102020482 uncharacterized LOC102020482 NW_004955436 4142905 4148903 + 102020482 AGCD01033656;GBDF01080390;XR_001234921 MODEL 8787224 protein-coding Dhps deoxyhypusine synthase ENCODES a protein that exhibits deoxyhypusine synthase activity (ortholog); identical protein binding (ortholog); INVOLVED IN glucose homeostasis (ortholog); peptidyl-lysine modification to peptidyl-hypusine (ortholog); positive regulation of T cell proliferation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); FOUND IN cytosol (ortholog) NW_004955415 31778632 31782782 - 102017865 AGCD01016697;GBDK01188232;XM_005381015 XP_005381072 MODEL 10364024 pseudo LOC106146942 AH receptor-interacting protein-like NW_004955407 31140051 31140688 - 106146942 AGCD01007642 MODEL 39132788 snrna U6 U6 spliceosomal RNA 8782936 pseudo LOC102015357 MOB-like protein phocein pseudogene NW_004955446 16623486 16624592 + 102015357 AGCD01040340 MODEL 8883302 protein-coding LOC102022662 defensin-5-like NW_004955403 53801771 53803475 + 102022662 AGCD01003074;GBDF01286772;XM_005373914 XP_005373971 MODEL 8757275 pseudo LOC102003119 ATP-binding cassette sub-family G member 2 pseudogene NW_004955470 8863858 8865469 + 102003119 AGCD01052834 MODEL 8727323 protein-coding LOC102005943 myoD family inhibitor domain-containing protein-like NW_004955421 17734841 17752220 + 102005943 AGCD01022030;XM_005383926 XP_005383983 MODEL 10133512 ncrna LOC106149202 uncharacterized LOC106149202 NW_004955439 10725386 10727055 + 106149202 AGCD01035887;GBDF01210324;XR_001235213 MODEL 9033716 pseudo LOC102007704 soluble lamin-associated protein of 75 kDa pseudogene NW_004955441 15516264 15525569 - 102007704 AGCD01037250 MODEL 8941105 protein-coding LOC102024691 cytochrome c oxidase subunit 8A, mitochondrial ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); mitochondrial complex IV deficiency nuclear type 1 (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955422 21062061 21065655 - 102024691 AGCD01023099;GBCQ01008979;XM_005384654 XP_005384711 MODEL 8952687 ncrna LOC102008867 uncharacterized LOC102008867 NW_004955494 7040036 7040325 - 102008867 AGCD01061545;GBDF01288756;XR_264117 MODEL 8719535 protein-coding Erich2 glutamate rich 2 ASSOCIATED WITH split hand-foot malformation 5 (ortholog) NW_004955449 4013473 4040524 - 102023213 AGCD01041872;GBBH01000968;XM_005393243;XM_013518737;XM_013518738;XM_013518739;XM_013518740;XM_013518741;XM_013518742;XM_013518743 XP_005393300;XP_013374191;XP_013374192;XP_013374193;XP_013374194;XP_013374195;XP_013374196;XP_013374197 MODEL 8977234 pseudo LOC102024693 28S ribosomal protein S7, mitochondrial pseudogene NW_004955422 16149376 16153022 + 102024693 AGCD01022891 MODEL 10176935 ncrna LOC106150044 uncharacterized LOC106150044 NW_004955406 21066788 21090380 - 106150044 AGCD01006116;AGCD01006117;GBDI01283220;XR_001236604;XR_001236605;XR_001236606 MODEL 8780071 protein-coding Lrfn5 leucine rich repeat and fibronectin type III domain containing 5 INVOLVED IN negative regulation of inflammatory response (ortholog); negative regulation of macrophage activation (ortholog); regulation of presynapse assembly (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog) NW_004955409 19710527 19969984 - 102013391 AGCD01009880;AGCD01009881;AGCD01009882;AGCD01009883;AGCD01009884;AGCD01009885;AGCD01009886;AGCD01009887;AGCD01009888;AGCD01009889;GBCE01047829;XM_005376880;XM_005376881;XM_013510459;XM_013510460;XM_013510461;XM_013510462 XP_005376937;XP_005376938;XP_013365913;XP_013365914;XP_013365915;XP_013365916 MODEL 8986383 protein-coding LOC102017140 ras association domain-containing protein 6-like NW_004955502 7963552 7974545 - 102017140 AGCD01064472;AGCD01064473;AGCD01064474;AGCD01064475;XM_013505818 XP_013361272 MODEL 8924655 protein-coding Bmp2 bone morphogenetic protein 2 ENCODES a protein that exhibits BMP receptor binding (ortholog); co-receptor binding (ortholog); cytokine activity (ortholog); INVOLVED IN ameloblast differentiation (ortholog); animal organ morphogenesis (ortholog); aortic valve development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH atrial heart septal defect 1 (ortholog); bone disease (ortholog); Bone Fractures (ortholog); FOUND IN BMP receptor complex (ortholog); cell surface (ortholog); cilium (ortholog) NW_004955415 17048374 17058172 + 102018921 AGCD01016408;XM_005380857 XP_005380914 MODEL 8915753 protein-coding Klk7 kallikrein related peptidase 7 ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN positive regulation of antibacterial peptide production (ortholog); FOUND IN cornified envelope (ortholog); epidermal lamellar body (ortholog); extracellular space (ortholog) NW_004955558 1490884 1494843 + 102023854 AGCD01073445;GBBH01120172;XM_005412722 XP_005412779 MODEL 8939485 protein-coding Tapt1 transmembrane anterior posterior transformation 1 INVOLVED IN embryonic skeletal system development (ortholog); positive regulation of cilium assembly (ortholog); ASSOCIATED WITH Dwarfism (ortholog); genetic disease (ortholog); Joubert syndrome 1 (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cytosol (ortholog) NW_004955480 7833883 7892948 + 102011988 AGCD01056710;AGCD01056711;AGCD01056712;GBDF01053644;XM_005402514 XP_005402571 MODEL 8851512 protein-coding Ier3ip1 immediate early response 3 interacting protein 1 INVOLVED IN brain development (ortholog); cell maturation (ortholog); chromatin organization (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); chromosome 18q deletion syndrome (ortholog); epilepsy (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955402 32532692 32550638 - 102007070 AGCD01000824;AGCD01000825;GBDK01229939;XM_005372888 XP_005372945 MODEL 9016850 protein-coding Znf473 zinc finger protein 473 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); INVOLVED IN mRNA 3'-end processing by stem-loop binding and cleavage (ortholog); negative regulation of transcription initiation by RNA polymerase II (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); invasive ductal carcinoma (ortholog); FOUND IN Cajal body (ortholog); nucleoplasm (ortholog) NW_004955559 911785 932510 - 102023855 AGCD01073621;GBDF01156870;XM_005412800 XP_005412857 MODEL 8873012 ncrna LOC102018016 uncharacterized LOC102018016 NW_004955433 19172341 19176616 + 102018016 AGCD01031860;XR_261599 MODEL 8990177 pseudo LOC102017146 eukaryotic translation initiation factor 3 subunit C pseudogene NW_004955428 16522665 16525883 + 102017146 AGCD01028024 MODEL 8838711 protein-coding Erich3 glutamate rich 3 INVOLVED IN cilium assembly (ortholog); FOUND IN cytoplasm (ortholog); non-motile cilium (ortholog) NW_004955423 18009243 18110340 + 102028651 AGCD01023866;GBDI01375173;XM_005385238;XM_005385239 XP_005385295;XP_005385296 MODEL 8980015 protein-coding Sec14l1 SEC14 like lipid binding 1 ENCODES a protein that exhibits protein sequestering activity (ortholog); RIG-I binding (ortholog); INVOLVED IN choline transport (ortholog); negative regulation of cytoplasmic pattern recognition receptor signaling pathway (ortholog); negative regulation of RIG-I signaling pathway (ortholog); ASSOCIATED WITH Monoclonal B-Cell Lymphocytosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955506 5159090 5231827 - 102016619 AGCD01065352;AGCD01065353;AGCD01065354;AGCD01065355;AGCD01065356;AGCD01065357;AGCD01065358;AGCD01065359;GBDK01074976;XM_013506067 XP_013361521 MODEL 8915134 protein-coding Usp3 ubiquitin specific peptidase 3 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); histone binding (ortholog); histone H2A deubiquitinase activity (ortholog); INVOLVED IN DNA repair (ortholog); DNA repair-dependent chromatin remodeling (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; ASSOCIATED WITH atrial fibrillation (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN chromatin (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); Flemming body (ortholog) NW_004955450 11729433 11802462 - 102022556 AGCD01042673;AGCD01042674;GBDF01089268;XM_005393775;XM_005393776;XM_005393778;XM_013518844;XM_013518845;XM_013518846;XM_013518847 XP_005393832;XP_005393833;XP_005393835;XP_013374298;XP_013374299;XP_013374300;XP_013374301 MODEL 39132878 snrna U1 U1 spliceosomal RNA 8818123 protein-coding LOC102018354 vomeronasal type-2 receptor 116-like NW_004955622 53461 73801 - 102018354 AGCD01077382;AGCD01077383;AGCD01077384;XM_005415017 XP_005415074 MODEL 8701326 protein-coding LOC102018017 olfactory receptor 2J3-like NW_004955524 45694 46627 + 102018017 AGCD01068663;XM_013507226 XP_013362680 MODEL 8738867 pseudo LOC102005947 protein FAM72A-like NW_004955497 509767 511648 - 102005947 AGCD01062421 MODEL 9026206 protein-coding LOC102017147 vomeronasal type-1 receptor 90-like NW_004955429 12324110 12325018 - 102017147 AGCD01028713;XM_005387245 XP_005387302 MODEL 8722502 pseudo LOC102007365 double-stranded RNA-binding protein Staufen homolog 1 pseudogene NW_004955530 1457860 1459504 - 102007365 AGCD01069884;XR_264702 MODEL 8900418 pseudo LOC102024086 aldose reductase-related protein 2 pseudogene NW_004955454 8367664 8368575 + 102024086 AGCD01045324 MODEL 39132884 snrna U1 U1 spliceosomal RNA 8995095 protein-coding Gpr83 G protein-coupled receptor 83 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); neuropeptide receptor activity (ortholog); INVOLVED IN feeding behavior (ortholog); G protein-coupled receptor signaling pathway (ortholog); neuropeptide signaling pathway (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cilium (ortholog); non-motile cilium (ortholog); plasma membrane (ortholog) NW_004955414 216867 229659 + 102018078 AGCD01014711;GBDF01221194;GBDF01221196;XM_005379679;XM_005379680 XP_005379736;XP_005379737 MODEL 8929795 protein-coding Usp30 ubiquitin specific peptidase 30 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); INVOLVED IN autophagy of mitochondrion (ortholog); mitochondrial fusion (ortholog); negative regulation of mitophagy (ortholog); PARTICIPATES IN mitochondrial autophagy pathway; FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955455 10234779 10257959 + 102029477 AGCD01045950;GBDF01051508;XM_005396480;XM_005396481 XP_005396537;XP_005396538 MODEL 8803287 pseudo LOC102027118 olfactory receptor 6C4-like NW_004955546 2448181 2449134 + 102027118 AGCD01072092 MODEL 10201761 protein-coding LOC106146943 collagen alpha-1(I) chain-like NW_004955407 31177549 31179654 + 106146943 AGCD01007642;XM_013506027 XP_013361481 MODEL 8760503 protein-coding LOC102009253 keratin-associated protein 20-2-like NW_004955407 30214295 30214462 + 102009253 AGCD01007628;XM_005375647 XP_005375704 MODEL 10313168 protein-coding LOC106150045 putative HTLV-1-related endogenous sequence NW_004955462 9705194 9706002 - 106150045 AGCD01049341;GBDI01338053;XM_013521424 XP_013376878 MODEL 8889144 pseudo LOC102020485 programmed cell death protein 5 pseudogene NW_004955439 176852 177293 - 102020485 AGCD01035581 MODEL 8798755 protein-coding LOC102018018 calcium-binding mitochondrial carrier protein SCaMC-1-like NW_004955435 11949742 12009579 - 102018018 AGCD01033128;AGCD01033129;GBDF01155495;XM_005388828;XM_013516552;XM_013516554;XM_013516555 XP_005388885;XP_013372006;XP_013372008;XP_013372009 MODEL 39132889 snrna U1 U1 spliceosomal RNA 8793086 protein-coding LOC102008868 CD70 antigen-like NW_004955495 3023146 3026631 - 102008868 AGCD01061815;GBDK01116023;XM_005405704;XM_005405705;XM_013505038;XM_013505039 XP_005405761;XP_005405762;XP_013360492;XP_013360493 MODEL 8865035 protein-coding LOC102015362 HLA class I histocompatibility antigen, B-42 alpha chain-like NW_004955583 535928 554579 + 102015362 AGCD01075834;AGCD01075835;AGCD01075836;GBDK01001510;XM_005414306 XP_005414363 MODEL 9067132 ncrna LOC102021391 uncharacterized LOC102021391 NW_004955542 1478570 1495492 + 102021391 AGCD01071504;GBCE01185531;XR_001232169;XR_001232170;XR_264854;XR_264855 MODEL 10134215 ncrna LOC106146944 uncharacterized LOC106146944 NW_004955506 5606682 5611404 - 106146944 AGCD01065374;GBCE01040867;XR_001231594;XR_001231595 MODEL 8765516 pseudo LOC102007705 tumor suppressor p53-binding protein 1-like NW_004955548 2402607 2409082 + 102007705 AGCD01072395 MODEL 39132893 snrna U1 U1 spliceosomal RNA 8883812 ncrna LOC102009257 uncharacterized LOC102009257 NW_004955460 11538025 11540811 + 102009257 AGCD01048633;GBDF01077791;XR_263059 MODEL 8747254 pseudo LOC102025116 phosphoglycerate kinase 2-like NW_004955416 1358051 1359301 - 102025116 AGCD01016834 MODEL 8770794 ncrna LOC102028799 uncharacterized LOC102028799 NW_004955541 2076257 2079034 - 102028799 AGCD01071400;GBDF01225756;XR_001232131 MODEL 8896711 pseudo LOC102021392 ADP-ribosylation factor-like protein 6-interacting protein 6 pseudogene NW_004955543 1498723 1499331 - 102021392 AGCD01071623 MODEL 10097040 ncrna LOC106146945 uncharacterized LOC106146945 NW_004955506 4102468 4103688 - 106146945 AGCD01065325;GBCE01013805;XR_001231596 MODEL 9042655 protein-coding Sec14l2 SEC14 like lipid binding 2 ENCODES a protein that exhibits enzyme activator activity (ortholog); transferase activity, transferring alkyl or aryl (other than methyl) groups (ortholog); INVOLVED IN positive regulation of cholesterol biosynthetic process (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955455 4637062 4660064 + 102020881 AGCD01045684;GBDF01123633;XM_005396260 XP_005396317 MODEL 8757371 protein-coding Spink5 serine peptidase inhibitor Kazal type 5 ENCODES a protein that exhibits peptidase inhibitor activity (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN epidermal cell differentiation (ortholog); negative regulation of proteolysis (ortholog); negative regulation of serine-type peptidase activity (ortholog); ASSOCIATED WITH Exfoliative Dermatitis (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN cell cortex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955415 6118616 6186632 - 102009598 AGCD01016012;GBCC01001605;XM_013512362;XM_013512363;XM_013512364 XP_013367816;XP_013367817;XP_013367818 MODEL 39132789 snrna U6 U6 spliceosomal RNA 39132897 snrna U1 U1 spliceosomal RNA 9037534 protein-coding LOC102010058 galectin-5-like NW_004955481 5603002 5609837 - 102010058 AGCD01056998;GBDI01345788;XM_005402926 XP_005402983 MODEL 39132790 snrna U6 U6 spliceosomal RNA 8786163 protein-coding Klk8 kallikrein related peptidase 8 ENCODES a protein that exhibits peptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN keratinocyte proliferation (ortholog); memory (ortholog); neuron projection morphogenesis (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog); serine protease inhibitor complex (ortholog) NW_004955558 1479383 1484209 + 102007283 AGCD01073444;GBDF01260584;XM_013508916 XP_013364370 MODEL 39131440 protein-coding SPINK5 serine peptidase inhibitor, Kazal type 5 39132900 snrna U1 U1 spliceosomal RNA 9018562 protein-coding Bmp2k BMP2 inducible kinase ENCODES a protein that exhibits phosphatase regulator activity (ortholog); protein kinase activity (ortholog); INVOLVED IN regulation of bone mineralization (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog) NW_004955433 3207512 3327688 + 102007147 AGCD01031417;AGCD01031418;AGCD01031419;AGCD01031420;GBDF01286250;XM_013516102 XP_013371556 MODEL 8760646 protein-coding Usp31 ubiquitin specific peptidase 31 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); ASSOCIATED WITH sensorineural hearing loss (ortholog); FOUND IN nucleus (ortholog) NW_004955493 1663268 1724522 - 102019608 AGCD01060900;AGCD01060901;GBDK01332170;XM_013504872;XM_013504873 XP_013360326;XP_013360327 MODEL 8864964 protein-coding Tfap4 transcription factor AP-4 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN DNA damage response, signal transduction by p53 class mediator (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of cyclin-dependent protein serine/threonine kinase activity (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); intellectual disability (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955442 13160467 13174288 + 102014088 AGCD01037763;AGCD01037764;GBDF01250040;GBDJ01175819;XM_005391306 XP_005391363 MODEL 39132668 snrna U6 U6 spliceosomal RNA 39132791 snrna U6 U6 spliceosomal RNA 39132903 snrna U1 U1 spliceosomal RNA 8889659 protein-coding Spink6 serine peptidase inhibitor Kazal type 6 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN negative regulation of serine-type endopeptidase activity (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN extracellular region (ortholog) NW_004955415 6041712 6053963 - 102007221 AGCD01016009;GBDJ01248322;XM_005380642 XP_005380699 MODEL 8853225 ncrna LOC102007708 uncharacterized LOC102007708 NW_004955443 5130686 5141731 - 102007708 AGCD01038232;GBCB01015177;XR_262176 MODEL 8717660 ncrna LOC102028800 uncharacterized LOC102028800 NW_004955438 8518357 8529062 - 102028800 AGCD01035161;GBDF01251003;XR_261921 MODEL 8701664 ncrna LOC102009258 uncharacterized LOC102009258 NW_004955410 7298409 7299909 + 102009258 AGCD01010712;GBDK01133796;XR_259823;XR_259824 MODEL 39132793 snrna U6 U6 spliceosomal RNA 39132906 snrna U1 U1 spliceosomal RNA 9047822 ncrna LOC102023021 uncharacterized LOC102023021 NW_004955470 8330094 8336006 - 102023021 AGCD01052826;GBDF01041373;XR_263477 MODEL 8717136 protein-coding LOC102006243 calsyntenin-1 NW_004955479 9732376 9734653 + 102006243 AGCD01056494;GBCE01076233;GBDI01068209;XM_013503286 XP_013358740 MODEL 9017908 pseudo LOC102028806 L-lactate dehydrogenase A chain pseudogene NW_004955443 4648591 4649593 + 102028806 AGCD01038218 MODEL 39132911 snrna U1 U1 spliceosomal RNA 39132795 snrna U6 U6 spliceosomal RNA 8873928 protein-coding LOC102019587 taste receptor type 2 member 7-like NW_004955413 6997395 7003912 + 102019587 AGCD01013788;XM_005379616 XP_005379673 MODEL 8815129 pseudo LOC102015364 ornithine decarboxylase antizyme 1 pseudogene NW_004955402 7185465 7186381 + 102015364 AGCD01000167 MODEL 8929995 protein-coding LOC102010059 olfactory receptor 2M5-like NW_004955418 30041497 30084803 - 102010059 AGCD01019499;AGCD01019500;AGCD01019501;AGCD01019502;AGCD01019503;XM_013512879 XP_013368333 MODEL 8722816 protein-coding Shc3 SHC adaptor protein 3 ENCODES a protein that exhibits phosphotyrosine residue binding (ortholog); INVOLVED IN learning or memory (ortholog); synaptic transmission, glutamatergic (ortholog); ASSOCIATED WITH Ependymomas (ortholog) NW_004955515 2858971 3016467 + 102017690 AGCD01067260;AGCD01067261;AGCD01067262;AGCD01067263;AGCD01067264;AGCD01067265;AGCD01067266;AGCD01067267;GBDI01163152;GBDI01244672;XM_005408881 XP_005408938 MODEL 39132917 snrna U1 U1 spliceosomal RNA 9039280 protein-coding Klk9 kallikrein related peptidase 9 NW_004955558 1472423 1478767 + 102023535 AGCD01073444;GBDJ01102216;XM_005412721;XM_013508917 XP_005412778;XP_013364371 MODEL 8987781 protein-coding Dhrs1 dehydrogenase/reductase 1 ENCODES a protein that exhibits carbonyl reductase (NADPH) activity (ortholog); oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955409 36002576 36040595 + 102018811 AGCD01010438;AGCD01010439;AGCD01010440;GBCE01000652;GBDK01020457;XM_013510399 XP_013365853 MODEL 39132797 snrna U6 U6 spliceosomal RNA 8990237 pseudo LOC102019588 40S ribosomal protein S16 pseudogene NW_004955469 3930223 3930657 - 102019588 AGCD01052310 MODEL 8742857 protein-coding Bmp3 bone morphogenetic protein 3 ENCODES a protein that exhibits BMP receptor binding (ortholog); growth factor activity (ortholog); INVOLVED IN negative regulation of ossification (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Tibial Fractures (ortholog); FOUND IN extracellular space (ortholog); vesicle (ortholog) NW_004955433 5194312 5246125 + 102007805 AGCD01031492;AGCD01031493;GBCE01008766;XM_005388497 XP_005388554 MODEL 9007013 pseudo LOC102010065 plasminogen activator inhibitor 1 RNA-binding protein pseudogene NW_004955424 3444768 3446184 - 102010065 AGCD01024310;XR_261038 MODEL 39131601 snrna U1 U1 spliceosomal RNA 8805733 protein-coding Shc4 SHC adaptor protein 4 ENCODES a protein that exhibits protein domain specific binding (ortholog); receptor tyrosine kinase binding (ortholog); INVOLVED IN apoptotic process (ortholog); positive regulation of cell population proliferation (ortholog); regulation of gene expression (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955409 5000209 5111352 + 102010874 AGCD01009306;AGCD01009307;GBDF01188743;XM_005376697 XP_005376754 MODEL 8922743 protein-coding LOC102003121 zinc finger protein 93-like NW_004955474 95780 107152 + 102003121 AGCD01054200;AGCD01054201;GBCE01168727;XM_005401299;XM_013502775;XM_013502776 XP_005401356;XP_013358229;XP_013358230 MODEL 8841146 protein-coding Ier5 immediate early response 5 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to heat (ortholog); positive regulation of cellular response to heat (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955406 20140510 20143147 + 102023432 AGCD01006098;AGCD01006099;GBBH01117662;GBDF01075618;XM_013521367 XP_013376821 MODEL 10332784 ncrna LOC106150046 uncharacterized LOC106150046 NW_004955462 9544598 9550462 + 106150046 AGCD01049339;GBDI01311494;XR_001236607 MODEL 39132798 snrna U6 U6 spliceosomal RNA 8794471 pseudo LOC102026076 protein lin-28 homolog A pseudogene NW_004955407 21955426 21956050 + 102026076 AGCD01007374 MODEL 8812474 protein-coding Ppp2r3c protein phosphatase 2 regulatory subunit B''gamma INVOLVED IN activation of protein kinase activity (ortholog); B cell homeostasis (ortholog); positive regulation of B cell differentiation (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); ectodermal dysplasia and immunodeficiency 2 (ortholog); Myoectodermal Gonadal Dysgenesis Syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); centrosome (ortholog); cilium (ortholog) NW_004955409 25920973 25943985 + 102030609 AGCD01010141;AGCD01010142;AGCD01010143;GBDF01005289;XM_005376927;XM_005376928;XM_013510375 XP_005376984;XP_005376985;XP_013365829 MODEL 9006521 protein-coding LOC102018356 large proline-rich protein BAG6-like NW_004955452 7679732 7684898 + 102018356 AGCD01044181;AGCD01044182;GBDI01323361;XM_005394959;XM_013519492 XP_005395016;XP_013374946 MODEL 8858566 protein-coding Vps37a VPS37A subunit of ESCRT-I INVOLVED IN ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway (ortholog); ASSOCIATED WITH hereditary spastic paraplegia (ortholog); hereditary spastic paraplegia 53 (ortholog); transverse myelitis (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); ESCRT I complex (ortholog) NW_004955463 254407 285178 - 102009698 AGCD01049479;GBCQ01122206;XM_005398335;XM_005398336;XM_005398337 XP_005398392;XP_005398393;XP_005398394 MODEL 39132800 snrna U6 U6 spliceosomal RNA 8761432 protein-coding Shcbp1 SHC binding and spindle associated 1 ENCODES a protein that exhibits SH2 domain binding (ortholog); INVOLVED IN fibroblast growth factor receptor signaling pathway (ortholog); regulation of neural precursor cell proliferation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); synovial sarcoma (ortholog) NW_004955448 74969 141627 - 102013229 AGCD01041217;AGCD01041218;AGCD01041219;AGCD01041220;AGCD01041221;AGCD01041222;GBDF01086273;XM_005392972;XM_005392973;XM_013518688 XP_005393029;XP_005393030;XP_013374142 MODEL 39132669 snrna U6 U6 spliceosomal RNA 8735812 pseudo LOC102017150 transcription factor Sp1 pseudogene NW_004955431 16457241 16462926 - 102017150 AGCD01030378 MODEL 8925147 pseudo LOC102021393 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like NW_004955439 7425526 7524935 - 102021393 AGCD01035768;AGCD01035769;AGCD01035770;AGCD01035771;AGCD01035772 MODEL 9067825 pseudo LOC102023753 translationally-controlled tumor protein-like NW_004955445 4686135 4689744 + 102023753 AGCD01039427 MODEL 8799840 pseudo LOC102007711 26S protease regulatory subunit 10B pseudogene NW_004955444 11911103 11912271 + 102007711 AGCD01039057 MODEL 8896102 protein-coding LOC102027120 vomeronasal type-1 receptor 3-like NW_004955558 294452 304796 + 102027120 AGCD01073361;AGCD01073362;AGCD01073363;XM_005412731 XP_005412788 MODEL 39132670 snrna U6 U6 spliceosomal RNA 10258632 ncrna LOC106149203 uncharacterized LOC106149203 NW_004955439 4194735 4233364 + 106149203 AGCD01035704;AGCD01035705;AGCD01035706;GBDF01190014;XR_001235214 MODEL 8721420 protein-coding Sec14l3 SEC14 like lipid binding 3 NW_004955455 4681026 4692277 - 102021729 AGCD01045684;GBCE01005166;XM_005396263;XM_005396267 XP_005396320;XP_005396324 MODEL 8929556 protein-coding LOC102017153 acylcarnitine hydrolase-like NW_004955433 23437473 23489212 + 102017153 AGCD01031962;AGCD01031963;AGCD01031964;AGCD01031965;AGCD01031966;AGCD01031967;AGCD01031968;GBDI01046093;XM_013516113 XP_013371567 MODEL 39131717 snrna U1 U1 spliceosomal RNA 8958472 protein-coding Xylt2 xylosyltransferase 2 ENCODES a protein that exhibits magnesium ion binding (ortholog); manganese ion binding (ortholog); protein xylosyltransferase activity (ortholog); INVOLVED IN chondroitin sulfate proteoglycan biosynthetic process (ortholog); glycosaminoglycan biosynthetic process (ortholog); heparan sulfate proteoglycan biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); osteogenesis imperfecta (ortholog); FOUND IN extracellular space (ortholog) NW_004955451 11347254 11354489 - 102011075 AGCD01043349;GBBH01051841;GBDF01249355;XM_013519097;XM_013519098 XP_013374551;XP_013374552 MODEL 39132671 snrna U6 U6 spliceosomal RNA 10240851 pseudo LOC106149204 anoctamin-5 pseudogene NW_004955439 15025788 15028892 + 106149204 AGCD01035997 MODEL 9056274 pseudo LOC102007368 proline-rich nuclear receptor coactivator 1 pseudogene NW_004955437 795083 811162 - 102007368 AGCD01034163;AGCD01034164;AGCD01034165;AGCD01034166 MODEL 8967815 protein-coding LOC102026077 chromosome unknown open reading frame, human C12orf71 NW_004955457 4101646 4104511 - 102026077 AGCD01046786;GBDF01192951;XM_005396936;XM_013520737 XP_005396993;XP_013376191 MODEL 8985394 protein-coding Lrg1 leucine rich alpha-2-glycoprotein 1 ENCODES a protein that exhibits transforming growth factor beta receptor binding (ortholog); type I transforming growth factor beta receptor binding (ortholog); type II transforming growth factor beta receptor binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); keratinocyte migration (ortholog); leukocyte adhesion to vascular endothelial cell (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); amenorrhea (ortholog); Colonic Neoplasms (ortholog); FOUND IN extracellular space (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955495 4402670 4405666 + 102007244 AGCD01061922;GBBH01012150;XM_005405791 XP_005405848 MODEL 39132672 snrna U6 U6 spliceosomal RNA 39132954 misc_rna Y_RNA Y RNA 9046695 protein-coding Mitd1 microtubule interacting and trafficking domain containing 1 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN midbody abscission (ortholog); mitotic cytokinesis (ortholog); multivesicular body sorting pathway (ortholog); ASSOCIATED WITH Cardiovascular Abnormalities (ortholog); Failure to Thrive (ortholog); genetic disease (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); membrane (ortholog); midbody (ortholog) NW_004955470 5493361 5509437 - 102010576 AGCD01052751;AGCD01052752;GBDJ01075595;XM_013522814;XM_013522815;XM_013522816;XM_013522817;XM_013522818 XP_013378268;XP_013378269;XP_013378270;XP_013378271;XP_013378272 MODEL 8837191 protein-coding Tnfrsf8 TNF receptor superfamily member 8 ENCODES a protein that exhibits protease binding (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); positive regulation of apoptotic process (ortholog); positive regulation of NF-kappaB transcription factor activity (ortholog); ASSOCIATED WITH AIDS-Related Opportunistic Infections (ortholog); anaplastic large cell lymphoma (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); FOUND IN nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955486 1839642 1910080 - 102026750 AGCD01058964;AGCD01058965;AGCD01058966;AGCD01058967;AGCD01058968;AGCD01058969;AGCD01058970;AGCD01058971;AGCD01058972;GBDF01016443;GBDK01097531;XM_013504324;XM_013504325;XM_013504326 XP_013359778;XP_013359779;XP_013359780 MODEL 8716486 protein-coding Laptm5 lysosomal protein transmembrane 5 ENCODES a protein that exhibits enzyme binding (ortholog); protein sequestering activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); defense response to tumor cell (ortholog); Golgi to lysosome transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); IgA glomerulonephritis (ortholog); FOUND IN cytoplasmic vesicle (ortholog); lysosomal membrane (ortholog); lysosome (ortholog) NW_004955452 9335481 9358177 - 102030146 AGCD01044236;GBDJ01075689;XM_005394999 XP_005395056 MODEL 8920691 protein-coding Tarbp1 tRNA guanosine 2 -O-methyltransferase TARBP1 ENCODES a protein that exhibits tRNA (guanine(18)-2'-O)-methyltransferase activity (ortholog); INVOLVED IN tRNA methylation (ortholog); ASSOCIATED WITH common variable immunodeficiency 14 (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955492 5252949 5313008 + 102027313 AGCD01060739;AGCD01060740;GBBH01126216;GBBH01126227;XM_005404955;XM_013504710 XP_005405012;XP_013360164 MODEL 39132673 snrna U6 U6 spliceosomal RNA 8717588 ncrna LOC102021394 uncharacterized LOC102021394 NW_004955547 1572431 1574209 - 102021394 AGCD01072233;GBBH01184529;XR_264902 MODEL 8821423 protein-coding Erich4 glutamate rich 4 ASSOCIATED WITH Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog) NW_004955555 369918 373848 + 102018655 AGCD01073025;AGCD01073026;GBDI01212353;XM_005412351;XR_001232313 XP_005412408 MODEL 8711873 ncrna LOC102006247 uncharacterized LOC102006247 NW_004955418 22849622 22877924 - 102006247 AGCD01019292;GBDF01144012;XR_260583 MODEL 8998574 protein-coding Lrguk leucine rich repeats and guanylate kinase domain containing INVOLVED IN axoneme assembly (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN acrosomal vesicle (ortholog); manchette (ortholog) NW_004955410 33753411 33870512 - 102004461 AGCD01011386;AGCD01011387;AGCD01011388;GBBH01180243;XM_005377538;XM_013510670;XM_013510671;XM_013510673 XP_005377595;XP_013366124;XP_013366125;XP_013366127 MODEL 8941104 pseudo LOC102023754 transmembrane protein 87B pseudogene NW_004955570 468945 469943 - 102023754 AGCD01074727 MODEL 8914152 pseudo LOC102013568 anaphase-promoting complex subunit 15 pseudogene NW_004955450 3337411 3337795 + 102013568 AGCD01042429 MODEL 8785417 pseudo LOC102024697 eukaryotic translation initiation factor 3 subunit K pseudogene NW_004955495 6153969 6155389 - 102024697 AGCD01062055 MODEL 8750033 protein-coding Ier5l immediate early response 5 like ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955570 1479582 1482281 - 102026053 AGCD01074814;AGCD01074815;GBCE01054506;GBCQ01097922;XM_013509437 XP_013364891 MODEL 39132674 snrna U6 U6 spliceosomal RNA 8778449 protein-coding LOC102015366 spermatid-specific linker histone H1-like protein NW_004955451 11494164 11495023 + 102015366 AGCD01043355;GBDF01003862;XM_005394178 XP_005394235 MODEL 8878242 protein-coding Tfb1m transcription factor B1, mitochondrial ENCODES a protein that exhibits rRNA (adenine-N6,N6-)-dimethyltransferase activity (ortholog); S-adenosyl-L-methionine binding (ortholog); INVOLVED IN rRNA methylation (ortholog); ASSOCIATED WITH chromosome 6q24-q25 deletion syndrome (ortholog); FOUND IN mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955439 6889432 6943152 + 102021047 AGCD01035762;GBDF01155564;XM_005390549;XM_005390550 XP_005390606;XP_005390607 MODEL 8911505 protein-coding Neurl4 neuralized E3 ubiquitin protein ligase 4 INVOLVED IN mitochondrial DNA repair (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog) NW_004955467 9588651 9600680 + 102019376 AGCD01051519;GBDI01178052;XM_005399515;XM_005399516;XM_005399517;XM_005399518 XP_005399572;XP_005399573;XP_005399574;XP_005399575 MODEL 8723486 protein-coding Ppp2r5a protein phosphatase 2 regulatory subunit B'alpha ENCODES a protein that exhibits kinase binding (ortholog); kinase inhibitor activity (ortholog); protein phosphatase activator activity (ortholog); INVOLVED IN negative regulation of protein localization to plasma membrane (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Emphysema (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955406 5059826 5115312 - 102014416 AGCD01005711;GBDK01003948;XM_005375450 XP_005375507 MODEL 8879960 protein-coding Sart3 spliceosome associated factor 3, U4/U6 recycling protein ENCODES a protein that exhibits histone binding (ortholog); protein-macromolecule adaptor activity (ortholog); U4 snRNA binding (ortholog); INVOLVED IN cell morphogenesis (ortholog); hematopoietic stem cell proliferation (ortholog); homeostasis of number of cells (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Porokeratosis 3, Multiple Types (ortholog); FOUND IN Cajal body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955455 9802260 9833326 - 102024529 AGCD01045931;GBCB01076004;XM_005396463;XM_005396464 XP_005396520;XP_005396521 MODEL 8837995 protein-coding Gpr84 G protein-coupled receptor 84 FOUND IN receptor complex (ortholog) NW_004955458 1602241 1604492 - 102005900 AGCD01047193;GBCE01172963;XM_005397219 XP_005397276 MODEL 10270038 ncrna LOC106149205 uncharacterized LOC106149205 NW_004955439 2084323 2092897 + 106149205 AGCD01035632;GBCE01161316;XR_001235218 MODEL 8821663 pseudo LOC102026080 HORMA domain-containing protein 1-like NW_004955409 24899247 24900573 - 102026080 AGCD01010095 MODEL 8716314 protein-coding Klkb1 kallikrein B1 INVOLVED IN liver regeneration (ortholog); plasminogen activation (ortholog); positive regulation of fibrinolysis (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Bietti crystalline corneoretinal dystrophy (ortholog); FOUND IN extracellular space (ortholog) NW_004955403 22835544 22856355 - 102017618 AGCD01002231;GBDK01227470;XM_005373431 XP_005373488 MODEL 9013545 protein-coding LOC102020486 protein FAM156A/FAM156B-like NW_004955543 3463624 3470902 + 102020486 AGCD01071691;GBDK01280853;XM_005411364 XP_005411421 MODEL 9022604 protein-coding Dhrs11 dehydrogenase/reductase 11 ENCODES a protein that exhibits 17-beta-hydroxysteroid dehydrogenase (NADP+) activity (ortholog); 3-beta-hydroxysteroid 3-dehydrogenase (NADP+) activity (ortholog); estradiol 17-beta-dehydrogenase [NAD(P)+] activity (ortholog); INVOLVED IN steroid biosynthetic process (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 17q12 deletion syndrome (ortholog) NW_004955451 1335134 1343271 - 102029349 AGCD01042966;GBCE01152721;GBCQ01009204;XM_005393942 XP_005393999 MODEL 8784216 ncrna LOC102008869 uncharacterized LOC102008869 NW_004955423 21824204 21851556 + 102008869 AGCD01023949;GBCQ01142430;XR_260986 MODEL 8833305 pseudo LOC102023022 chromodomain Y-like protein NW_004955471 4640224 4642375 - 102023022 AGCD01053084 MODEL 8818448 pseudo LOC102026081 zinc finger protein 23 pseudogene NW_004955460 9831900 9835067 - 102026081 AGCD01048556 MODEL 8780735 protein-coding LOC102007712 basic proline-rich protein-like NW_004955445 2689893 2693822 - 102007712 AGCD01039361;GBDF01211368;XM_005392263;XR_001235561;XR_262297 XP_005392320 MODEL 9039418 protein-coding Large1 LARGE xylosyl- and glucuronyltransferase 1 ENCODES a protein that exhibits glucuronosyltransferase activity (ortholog); glycosyltransferase activity (ortholog); hexosyltransferase activity (ortholog); INVOLVED IN acetylcholine receptor signaling pathway (ortholog); astrocyte differentiation (ortholog); basement membrane organization (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); congenital muscular dystrophy (ortholog); congenital muscular dystrophy-dystroglycanopathy type A1 (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955405 41891430 42225066 - 102004669 AGCD01005567;AGCD01005568;AGCD01005569;AGCD01005570;AGCD01005571;AGCD01005572;AGCD01005573;AGCD01005574;AGCD01005575;AGCD01005576;AGCD01005577;AGCD01005578;GBBH01110525;GBCB01058063;XM_005374653 XP_005374710 MODEL 8823122 protein-coding Tnfrsf9 TNF receptor superfamily member 9 ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN regulation of immature T cell proliferation in thymus (ortholog); ASSOCIATED WITH celiac disease (ortholog); chromosome 1p36 deletion syndrome (ortholog); Colonic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955486 4986245 5009437 + 102004168 AGCD01059074;GBDF01144267;XM_005404066;XM_013504319;XM_013504320;XM_013504321 XP_005404123;XP_013359773;XP_013359774;XP_013359775 MODEL 8725240 protein-coding Usp32 ubiquitin specific peptidase 32 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN positive regulation of TORC1 signaling (ortholog); ASSOCIATED WITH Joubert syndrome 1 (ortholog); megacolon (ortholog); ovarian carcinoma (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog) NW_004955451 1511687 1678546 - 102007490 AGCD01042972;AGCD01042973;AGCD01042974;AGCD01042975;AGCD01042976;GBDK01186069;XM_005393962;XM_013519383 XP_005394019;XP_013374837 MODEL 8711177 pseudo LOC102012383 zinc finger protein 132-like NW_004955584 1075427 1081804 - 102012383 AGCD01075978;XR_265112;XR_265113 MODEL 8792967 protein-coding LOC102006248 olfactory receptor 1B1 NW_004955419 5318963 5319916 - 102006248 AGCD01019801;XM_005382524 XP_005382581 MODEL 39132801 snrna U6 U6 spliceosomal RNA 39132675 snrna U6 U6 spliceosomal RNA 8914672 protein-coding LOC102007716 zinc finger protein 416 NW_004955584 345732 357089 - 102007716 AGCD01075940;GBDF01260674;XM_013509856;XR_001232513;XR_001232514 XP_013365310 MODEL 8916424 protein-coding Shcbp1l SHC binding and spindle associated 1 like INVOLVED IN positive regulation of chromosome organization (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN meiotic spindle (ortholog) NW_004955406 21754461 21785156 - 102024425 AGCD01006142;AGCD01006143;GBDF01008400;XM_013521488 XP_013376942 MODEL 9028743 ncrna LOC102007371 uncharacterized LOC102007371 NW_004955546 1333455 1336205 - 102007371 AGCD01072048;GBBH01028831;XR_264889 MODEL 39132955 misc_rna Y_RNA Y RNA 8771338 pseudo LOC102005948 coiled-coil domain-containing protein 152-like NW_004955424 19596277 19597238 - 102005948 AGCD01024830 MODEL 10106038 ncrna LOC106150047 uncharacterized LOC106150047 NW_004955462 4091267 4100236 - 106150047 AGCD01049216;GBDK01272450;XR_001236608 MODEL 8836665 pseudo LOC102003366 protein archease pseudogene NW_004955513 4104178 4104694 + 102003366 AGCD01066919 MODEL 8747304 pseudo LOC102027121 nuclease-sensitive element-binding protein 1 pseudogene NW_004955443 1854504 1855448 - 102027121 AGCD01038147 MODEL 9053137 protein-coding Ppp2r5b protein phosphatase 2 regulatory subunit B'beta INVOLVED IN cellular response to growth factor stimulus (ortholog); negative regulation of G0 to G1 transition (ortholog); positive regulation of DNA-binding transcription factor activity (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog); intellectual disability (ortholog) NW_004955422 20252306 20260776 - 102022091 AGCD01023072;GBCB01023268;XM_005384532;XM_005384533;XM_013513967;XM_013513968 XP_005384589;XP_005384590;XP_013369421;XP_013369422 MODEL 8792637 protein-coding Tarbp2 TARBP2 subunit of RISC loading complex ENCODES a protein that exhibits double-stranded RNA binding (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN global gene silencing by mRNA cleavage (ortholog); miRNA processing (ortholog); multicellular organism growth (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH Microsatellite Instability (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955458 793753 798755 + 102021736 AGCD01047154;GBDF01005633;XM_005397180;XM_005397181;XM_005397182;XM_005397183 XP_005397237;XP_005397238;XP_005397239;XP_005397240 MODEL 39132932 misc_rna Y_RNA Y RNA 10083664 ncrna LOC106150048 uncharacterized LOC106150048 NW_004955462 6088921 6150885 - 106150048 AGCD01049271;AGCD01049272;GBCE01165438;XR_001236610 MODEL 8813919 protein-coding Sec14l4 SEC14 like lipid binding 4 NW_004955455 4716470 4742277 - 102023112 AGCD01045687;AGCD01045688;GBDK01002305;XM_005396269;XM_013520472;XM_013520473;XM_013520474 XP_005396326;XP_013375926;XP_013375927;XP_013375928 MODEL 9002015 ncrna LOC102024698 uncharacterized LOC102024698 NW_004955423 25434798 25436601 + 102024698 AGCD01024075;GBDF01082418;XR_001234098;XR_001234099;XR_260996 MODEL 10251315 ncrna LOC106146946 uncharacterized LOC106146946 NW_004955506 560908 566830 + 106146946 AGCD01065232;XR_001231597 MODEL 8995816 protein-coding Iffo1 intermediate filament family orphan 1 INVOLVED IN DNA double-strand break attachment to nuclear envelope (ortholog); double-strand break repair via nonhomologous end joining (ortholog); protein localization to site of double-strand break (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); peroxisome biogenesis disorder 2B (ortholog); FOUND IN nuclear matrix (ortholog); nucleoplasm (ortholog); site of double-strand break (ortholog) NW_004955413 4167461 4180043 - 102016146 AGCD01013601;GBDJ01313478;XM_005378772;XM_005378774;XM_005378775;XM_005378776;XM_005378777 XP_005378829;XP_005378831;XP_005378832;XP_005378833;XP_005378834 MODEL 39132941 misc_rna Y_RNA Y RNA 8861736 protein-coding LOC102019591 olfactory receptor 52K1-like NW_004955414 19909126 19910145 - 102019591 AGCD01015341;XM_005380459 XP_005380516 MODEL 39132676 snrna U6 U6 spliceosomal RNA 10088574 ncrna LOC106149206 uncharacterized LOC106149206 NW_004955439 1939433 1950242 + 106149206 AGCD01035628;GBDJ01212818;XR_001235219;XR_001235220 MODEL 9055271 protein-coding Neurod1 neuronal differentiation 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); anterior/posterior pattern specification (ortholog); camera-type eye development (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); Experimental Diabetes Mellitus (ortholog); fundus dystrophy (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955403 15595888 15600040 + 102019227 AGCD01002049;GBDF01040587;XM_005373354 XP_005373411 MODEL 8952084 pseudo LOC102007372 60S ribosomal protein L26-like NW_004955441 13050841 13051739 - 102007372 AGCD01037141 MODEL 8728628 ncrna LOC102025118 uncharacterized LOC102025118 NW_004955416 9380213 9382086 - 102025118 AGCD01017086;GBDK01117927;XR_001233292;XR_001233293 MODEL 39132943 misc_rna Y_RNA Y RNA 8860106 protein-coding Shd Src homology 2 domain containing transforming protein D ASSOCIATED WITH amenorrhea (ortholog) NW_004955495 4579252 4587192 - 102010816 AGCD01061934;AGCD01061935;GBBH01135216;XM_005405804 XP_005405861 MODEL 8810044 protein-coding LOC102017156 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1 NW_004955435 22646282 22653042 + 102017156 AGCD01033516;GBCE01173521;XM_005389085 XP_005389142 MODEL 39132677 snrna U6 U6 spliceosomal RNA 10124280 ncrna LOC106149207 uncharacterized LOC106149207 NW_004955439 1993962 2084122 - 106149207 AGCD01035629;AGCD01035630;AGCD01035631;AGCD01035632;GBDF01256052;XR_001235221 MODEL 8713119 ncrna LOC102003369 uncharacterized LOC102003369 NW_004955518 211147 307647 + 102003369 AGCD01067721;AGCD01067722;AGCD01067723;AGCD01067724;AGCD01067725;AGCD01067726;AGCD01067727;GBDF01095069;XR_001231851;XR_001231852 MODEL 39132945 misc_rna Y_RNA Y RNA 8987961 protein-coding LOC102026085 zinc finger protein 655-like NW_004955460 15205776 15222996 + 102026085 AGCD01048771;AGCD01048772;GBDJ01187550;XM_013521181;XM_013521182;XM_013521183;XM_013521184;XM_013521185;XM_013521186;XM_013521188;XM_013521189;XM_013521190 XP_013376635;XP_013376636;XP_013376637;XP_013376638;XP_013376639;XP_013376640;XP_013376642;XP_013376643;XP_013376644 MODEL 8952304 protein-coding Neurod2 neuronal differentiation 2 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN associative learning (ortholog); behavioral fear response (ortholog); cellular response to calcium ion (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 72 (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog) NW_004955451 14368605 14370544 - 102019763 AGCD01043549;XM_005394611 XP_005394668 MODEL 8905147 ncrna LOC102017160 uncharacterized LOC102017160 NW_004955536 2781372 2785091 + 102017160 AGCD01070802;GBCB01039543;XR_264763 MODEL 39132678 snrna U6 U6 spliceosomal RNA 9053708 protein-coding Ppp2r5c protein phosphatase 2 regulatory subunit B'gamma ENCODES a protein that exhibits peptidase activity (ortholog); protein phosphatase regulator activity (ortholog); INVOLVED IN DNA damage response, signal transduction by p53 class mediator (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 41 (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); Charcot-Marie-Tooth disease axonal type 2O (ortholog); FOUND IN chromosome, centromeric region (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955538 1233511 1363956 + 102022745 AGCD01071054;AGCD01071055;AGCD01071056;GBCE01075191;GBDF01002398;XM_013507826 XP_013363280 MODEL 8830376 protein-coding Tnfsf10 TNF superfamily member 10 ENCODES a protein that exhibits cytokine activity (ortholog); identical protein binding (ortholog); TRAIL binding (ortholog); INVOLVED IN male gonad development (ortholog); positive regulation of apoptotic process (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN Trail mediated signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); arteriosclerosis (ortholog); Brain Injuries (ortholog); FOUND IN extracellular space (ortholog) NW_004955420 2550392 2566448 - 102029748 AGCD01020602;GBBH01065699;XM_005383009 XP_005383066 MODEL 8823121 pseudo LOC102003373 bile acid receptor-like NW_004955435 18126734 18135541 + 102003373 AGCD01033389;AGCD01033390 MODEL 39132947 misc_rna Y_RNA Y RNA 8740091 pseudo LOC102017162 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 pseudogene NW_004955437 21150063 21151074 - 102017162 AGCD01034900 MODEL 8748836 ncrna LOC102008872 uncharacterized LOC102008872 NW_004955424 19963501 19969899 + 102008872 AGCD01024841;GBDI01147421;XR_001234129;XR_001234130;XR_001234131;XR_261086;XR_261087 MODEL 39132679 snrna U6 U6 spliceosomal RNA 8725768 ncrna LOC102021396 uncharacterized LOC102021396 NW_004955550 1116020 1133375 + 102021396 AGCD01072549;AGCD01072550;GBDF01084147;XR_001232258 MODEL 8871064 protein-coding Klrg1 killer cell lectin like receptor G1 ENCODES a protein that exhibits carbohydrate binding (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); COVID-19 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog) NW_004955413 6119299 6131907 - 102022686 AGCD01013709;AGCD01013710;GBDK01026415;XM_005378892;XM_005378893 XP_005378949;XP_005378950 MODEL 39131816 snrna U1 U1 spliceosomal RNA 8933107 protein-coding LOC102005950 cytochrome P450 2C55 NW_004955507 1146694 1227783 + 102005950 AGCD01065516;AGCD01065517;AGCD01065518;AGCD01065519;AGCD01065520;AGCD01065521;AGCD01065522;AGCD01065523;AGCD01065524;AGCD01065525;AGCD01065526;GBDI01308871;XM_005407534;XM_013506231 XP_005407591;XP_013361685 MODEL 39132948 misc_rna Y_RNA Y RNA 8942012 protein-coding Vps37b VPS37B subunit of ESCRT-I ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); endosome membrane (ortholog) NW_004955482 5879273 5884217 + 102027852 AGCD01057354;AGCD01057355;GBDF01005686;XM_013503573 XP_013359027 MODEL 8707990 ncrna LOC102018022 uncharacterized LOC102018022 NW_004955533 900860 904030 - 102018022 AGCD01070334;GBDF01261009;XR_264740 MODEL 9003348 protein-coding LOC102021397 olfactory receptor 4K15-like NW_004955550 492121 493077 - 102021397 AGCD01072509;XM_005412131 XP_005412188 MODEL 8780663 ncrna LOC102005951 uncharacterized LOC102005951 NW_004955429 3029946 3056828 + 102005951 AGCD01028449;AGCD01028450;AGCD01028451;AGCD01028452;AGCD01028453;AGCD01028454;GBDF01054382;XR_261312 MODEL 9058436 protein-coding LOC102006251 olfactory receptor 13C3-like NW_004955419 21880670 21881698 + 102006251 AGCD01020289;XM_013513142 XP_013368596 MODEL 8768580 protein-coding Kmo kynurenine 3-monooxygenase ENCODES a protein that exhibits FAD binding (ortholog); flavin adenine dinucleotide binding (ortholog); kynurenine 3-monooxygenase activity (ortholog); INVOLVED IN cellular response to interleukin-1 (ortholog); cellular response to lipopolysaccharide (ortholog); kynurenic acid biosynthetic process (ortholog); PARTICIPATES IN kynurenine metabolic pathway; tryptophan metabolic pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); allergic contact dermatitis (ortholog); depressive disorder (ortholog); FOUND IN extracellular space (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955406 10496102 10527181 - 102018799 AGCD01005864;GBDK01116425;XM_005374821 XP_005374878 MODEL 10101770 ncrna LOC106149208 uncharacterized LOC106149208 NW_004955439 2093032 2094414 + 106149208 AGCD01035633;XR_001235222 MODEL 8799324 pseudo LOC102020488 chromobox protein homolog 5 pseudogene NW_004955545 2014829 2017147 + 102020488 AGCD01071878;AGCD01071879;AGCD01071880 MODEL 9017096 protein-coding Gpr85 G protein-coupled receptor 85 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum (ortholog); plasma membrane (ortholog) NW_004955432 19260909 19265744 - 102006702 AGCD01031176;GBDI01105800;XM_005388109;XM_013516083;XM_013516084 XP_005388166;XP_013371537;XP_013371538 MODEL 8715171 pseudo LOC102028807 hematological and neurological expressed 1 protein pseudogene NW_004955444 9014695 9015132 + 102028807 AGCD01038953 MODEL 9030184 pseudo LOC102022663 synaptosomal-associated protein 23 pseudogene NW_004955451 15393866 15394819 - 102022663 AGCD01043606 MODEL 8783437 ncrna LOC102006252 uncharacterized LOC102006252 NW_004955486 9666236 9670686 - 102006252 AGCD01059195;GBDK01396724;XR_001231108;XR_001231109;XR_001231110;XR_001231111;XR_001231112;XR_263975;XR_263977 MODEL 10340638 ncrna LOC106149209 uncharacterized LOC106149209 NW_004955440 8667885 8684777 + 106149209 AGCD01036359;GBDI01023307;XR_001235225 MODEL 8745521 ncrna LOC102009260 uncharacterized LOC102009260 NW_004955463 9987660 9990965 - 102009260 AGCD01049803;GBDF01112751;XR_263165 MODEL 8983946 protein-coding LOC102013569 late cornified envelope protein 1C NW_004955592 613174 614854 - 102013569 AGCD01076320;GBDI01027737;XM_005414621 XP_005414678 MODEL 8870709 protein-coding LOC102023759 chromosome unknown open reading frame, human C6orf15 ENCODES a protein that exhibits collagen binding (ortholog); collagen V binding (ortholog); fibronectin binding (ortholog); INVOLVED IN extracellular matrix organization (ortholog); ASSOCIATED WITH megacolon (ortholog); peeling skin syndrome 1 (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN extracellular matrix (ortholog); interstitial matrix (ortholog) NW_004955583 955027 956397 - 102023759 AGCD01075875;GBDI01322667;XM_005414329;XM_013509835;XM_013509836 XP_005414386;XP_013365289;XP_013365290 MODEL 8959231 protein-coding Large2 LARGE xylosyl- and glucuronyltransferase 2 ENCODES a protein that exhibits dystroglycan binding (ortholog); glucuronosyltransferase activity (ortholog); glycosyltransferase activity (ortholog); INVOLVED IN protein O-linked mannosylation (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIc (ortholog); infantile Refsum disease (ortholog); intellectual disability (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog) NW_004955422 2045986 2052086 - 102007785 AGCD01022476;AGCD01022477;GBCE01183052;GBDJ01181464;XM_005384944 XP_005385001 MODEL 39132680 snrna U6 U6 spliceosomal RNA 8967293 protein-coding Spink7 serine peptidase inhibitor Kazal type 7 INVOLVED IN inflammatory response (ortholog); negative regulation of cytokine production involved in inflammatory response (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN extracellular space (ortholog) NW_004955415 5954880 5958319 + 102006340 AGCD01016004;GBDJ01221132;XM_013512295 XP_013367749 MODEL 10118818 ncrna LOC106150049 uncharacterized LOC106150049 NW_004955462 9262852 9264945 - 106150049 AGCD01049335;XR_001236612;XR_001236613;XR_001236614 MODEL 8778085 protein-coding Sec14l5 SEC14 like lipid binding 5 ASSOCIATED WITH Rubinstein-Taybi syndrome (ortholog) NW_004955442 12527999 12567626 - 102028687 AGCD01037738;AGCD01037739;AGCD01037740;GBCB01075777;XM_005391257 XP_005391314 MODEL 8759671 protein-coding Mitf melanocyte inducing transcription factor ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN bone remodeling (ortholog); camera-type eye development (ortholog); cell differentiation (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); Camurati-Engelmann disease (ortholog); COLOBOMA, OSTEOPETROSIS, MICROPHTHALMIA, MACROCEPHALY, ALBINISM, AND DEAFNESS (ortholog); FOUND IN cytoplasm (ortholog); lysosomal membrane (ortholog); nucleus (ortholog) NW_004955421 17948117 18157379 - 102007905 AGCD01022034;AGCD01022035;AGCD01022036;AGCD01022037;GBCQ01094737;XM_005383791;XM_005383792;XM_005383794;XM_005383795;XM_013513760;XM_013513761;XM_013513762 XP_005383848;XP_005383849;XP_005383851;XP_005383852;XP_013369214;XP_013369215;XP_013369216 MODEL 8904416 ncrna LOC102003126 uncharacterized LOC102003126 NW_004955478 4555513 4561148 + 102003126 AGCD01055852;GBDF01157448;XR_001230854;XR_001230855 MODEL 8825026 protein-coding LOC102024088 transmembrane epididymal protein 1A-like NW_004955406 21319459 21320241 + 102024088 AGCD01006123;XM_005375465 XP_005375522 MODEL 8958627 protein-coding Iffo2 intermediate filament family orphan 2 ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital disorder of glycosylation Ir (ortholog) NW_004955527 294950 332716 + 102017494 AGCD01069380;AGCD01069381;GBCE01013302;XM_005409798;XM_005409799 XP_005409855;XP_005409856 MODEL 8876507 protein-coding Neurod4 neuronal differentiation 4 INVOLVED IN amacrine cell differentiation (ortholog); camera-type eye development (ortholog); cell fate commitment (ortholog) NW_004955458 2138849 2146636 + 102010774 AGCD01047215;XM_005397236 XP_005397293 MODEL 10179051 ncrna LOC106150050 uncharacterized LOC106150050 NW_004955402 13908202 13918596 + 106150050 AGCD01000418;GBDF01289313;XR_001236616 MODEL 9007676 ncrna LOC102005952 uncharacterized LOC102005952 NW_004955429 17092345 17096969 - 102005952 AGCD01028845;GBCQ01165026;XR_001234501;XR_001234502;XR_001234503;XR_261348 MODEL 8879916 protein-coding Lrif1 ligand dependent nuclear receptor interacting factor 1 INVOLVED IN dosage compensation by inactivation of X chromosome (ortholog); ASSOCIATED WITH autistic disorder (ortholog); facioscapulohumeral muscular dystrophy 3 (ortholog); hereditary spastic paraplegia 63 (ortholog); FOUND IN Barr body (ortholog); centriolar satellite (ortholog); chromosome, telomeric region (ortholog) NW_004955435 14467123 14485109 - 102021479 AGCD01033234;GBDJ01262130;XM_005388933;XM_005388935 XP_005388990;XP_005388992 MODEL 8723035 ncrna LOC102025119 uncharacterized LOC102025119 NW_004955416 31751765 31788345 + 102025119 AGCD01017770;AGCD01017771;AGCD01017772;AGCD01017773;GBDF01288200;XR_001233286;XR_260453;XR_260454;XR_260455;XR_260456 MODEL 9025335 protein-coding Slc16a4 solute carrier family 16 member 4 ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 32 (ortholog); hereditary spastic paraplegia 63 (ortholog) NW_004955435 13865956 13892687 - 102017378 AGCD01033212;GBCB01050157;XM_005388918;XM_005388919;XM_005388920;XM_013516513;XM_013516515;XM_013516516;XM_013516517 XP_005388975;XP_005388976;XP_005388977;XP_013371967;XP_013371969;XP_013371970;XP_013371971 MODEL 8927467 pseudo LOC102015369 DNA endonuclease RBBP8 pseudogene NW_004955405 5020117 5022070 - 102015369 AGCD01004673 MODEL 8887043 ncrna LOC102008873 uncharacterized LOC102008873 NW_004955427 6400197 6403763 + 102008873 AGCD01027028;GBDF01126299;XR_261236 MODEL 10378174 ncrna LOC106150051 uncharacterized LOC106150051 NW_004955462 2601698 2610948 - 106150051 AGCD01049177;XR_001236617 MODEL 39131822 snrna U1 U1 spliceosomal RNA 9060147 protein-coding Tardbp TAR DNA binding protein ENCODES a protein that exhibits DNA binding (ortholog); double-stranded DNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); 3'-UTR-mediated mRNA stabilization (ortholog); amyloid fibril formation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); FOUND IN interchromatin granule (ortholog); intracellular membraneless organelle (ortholog); nuclear speck (ortholog) NW_004955486 2656121 2674808 - 102013088 AGCD01059002;AGCD01059003;GBDI01005512;XM_005404010;XM_005404011;XM_013504182;XR_001231105;XR_001231106 XP_005404067;XP_005404068;XP_013359636 MODEL 9025392 protein-coding Usp33 ubiquitin specific peptidase 33 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); G protein-coupled receptor binding (ortholog); INVOLVED IN axon guidance (ortholog); cell migration (ortholog); cellular response to starvation (ortholog); FOUND IN centrosome (ortholog); focal adhesion (ortholog); Golgi apparatus (ortholog) NW_004955423 15424349 15469344 + 102020025 AGCD01023809;GBCE01024162;XM_013514523;XM_013514524 XP_013369977;XP_013369978 MODEL 10294446 ncrna LOC106146947 uncharacterized LOC106146947 NW_004955506 5255245 5273187 - 106146947 AGCD01065359;AGCD01065360;GBDF01222339;XR_001231598;XR_001231599;XR_001231600;XR_001231601 MODEL 8754996 pseudo LOC102018025 inositol polyphosphate multikinase pseudogene NW_004955537 2739915 2745001 - 102018025 AGCD01070938 MODEL 8920507 pseudo LOC102015374 60S ribosomal protein L4 pseudogene NW_004955406 5796336 5796880 - 102015374 AGCD01005741 MODEL 9001458 protein-coding Spink8 serine peptidase inhibitor Kazal type 8 (putative) ASSOCIATED WITH Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog) NW_004955420 24283223 24298948 + 102007666 AGCD01021288;AGCD01021289;AGCD01021290;GBCB01057695;GBCQ01003584;XM_013513475 XP_013368929 MODEL 39131829 snrna U1 U1 spliceosomal RNA 8895999 pseudo LOC102023761 NEDD4 family-interacting protein 1 pseudogene NW_004955589 318420 319191 + 102023761 AGCD01076165 MODEL 8699530 pseudo LOC102003375 mortality factor 4-like protein 1 pseudogene NW_004955532 142317 143401 + 102003375 AGCD01070101 MODEL 8753664 protein-coding LOC102020489 beta-microseminoprotein-like NW_004955546 2799719 2807328 + 102020489 AGCD01072101;GBDI01016094;XM_005411810;XM_005411811 XP_005411867;XP_005411868 MODEL 8746468 protein-coding LOC102018360 maestro heat-like repeat family member 5 NW_004955454 1331678 1366820 - 102018360 AGCD01044968;GBDI01324363;XM_013520086;XM_013520087;XM_013520088;XM_013520089;XM_013520090 XP_013375540;XP_013375541;XP_013375542;XP_013375543;XP_013375544 MODEL 8937820 ncrna LOC102024089 uncharacterized LOC102024089 NW_004955456 2073926 2095524 - 102024089 AGCD01046246;AGCD01046247;GBDF01286846;XR_262868 MODEL 8716485 protein-coding Ifi16 interferon gamma inducible protein 16 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); identical protein binding (ortholog); transcription coregulator activity (ortholog); INVOLVED IN cellular response to glucose starvation (ortholog); cellular response to interferon-alpha (ortholog); cellular response to interferon-beta (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); Experimental Liver Cirrhosis (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear inclusion body (ortholog) NW_004955468 10828726 10845853 + 102029846 AGCD01052105;GBDI01294199;XM_013522456;XM_013522457;XR_001236915 XP_013377910;XP_013377911 MODEL 8811797 protein-coding LOC102028812 testis-specific protein TSX-like NW_004955591 414675 454117 - 102028812 AGCD01076262;AGCD01076263;AGCD01076264;AGCD01076265;AGCD01076266;GBDF01124586;XM_013509965 XP_013365419 MODEL 9040378 protein-coding Znf48 zinc finger protein 48 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); prostate cancer (ortholog) NW_004955493 7319347 7336416 + 102013095 AGCD01061179;AGCD01061180;AGCD01061181;GBCQ01152743;XM_005405252 XP_005405309 MODEL 8856874 protein-coding Tfb2m transcription factor B2, mitochondrial ENCODES a protein that exhibits mitochondrial transcription factor activity (ortholog); INVOLVED IN mitochondrial transcription (ortholog); transcription initiation at mitochondrial promoter (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955406 9424329 9441212 - 102011173 AGCD01005819;AGCD01005820;GBCB01073815;XM_005374792 XP_005374849 MODEL 8851640 ncrna LOC102012385 uncharacterized LOC102012385 NW_004955592 538916 543806 - 102012385 AGCD01076317;GBDI01163562;XR_265140 MODEL 8868835 protein-coding She Src homology 2 domain containing E ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); dyschromatosis symmetrica hereditaria (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955545 989390 1011100 - 102012248 AGCD01071830;AGCD01071831;GBDF01178649;GBDF01192726;XM_005411520 XP_005411577 MODEL 8712869 pseudo LOC102018362 U2 snRNP-associated SURP motif-containing protein pseudogene NW_004955406 30253163 30256294 - 102018362 AGCD01006363 MODEL 8765741 ncrna LOC102013571 uncharacterized LOC102013571 NW_004955450 15353511 15354490 + 102013571 AGCD01042789;GBCQ01060641;XR_262557 MODEL 9049610 ncrna LOC102009262 uncharacterized LOC102009262 NW_004955411 32414637 32423545 - 102009262 AGCD01012315;AGCD01012316;AGCD01012317;GBCQ01032791;XR_001232824;XR_259951 MODEL 8832840 protein-coding Vps37c VPS37C subunit of ESCRT-I ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN cilium (ortholog); ESCRT I complex (ortholog); Golgi apparatus (ortholog) NW_004955511 5672053 5684660 - 102004409 AGCD01066574;AGCD01066575;GBDK01309810;XM_005408121;XM_005408123;XM_005408124;XM_013506494 XP_005408178;XP_005408180;XP_005408181;XP_013361948 MODEL 8832297 protein-coding Ifi30 IFI30 lysosomal thiol reductase ENCODES a protein that exhibits oxidoreductase activity, acting on a sulfur group of donors (ortholog); INVOLVED IN antigen processing and presentation of exogenous peptide antigen via MHC class I (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); negative regulation of fibroblast proliferation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); allergic contact dermatitis (ortholog); Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); FOUND IN cell junction (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955524 3229024 3230955 - 102010831 AGCD01068868;GBBH01004304;GBCB01022981;XM_013507264 XP_013362718 MODEL 8805165 protein-coding Sash1 SAM and SH3 domain containing 1 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); mitogen-activated protein kinase kinase kinase binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN positive regulation of angiogenesis (ortholog); positive regulation of endothelial cell migration (ortholog); positive regulation of JUN kinase activity (ortholog); ASSOCIATED WITH Cancer, Alopecia, Pigment Dyscrasia, Onychodystrophy, and Keratoderma (ortholog); developmental and epileptic encephalopathy 13 (ortholog); Dyschromatosis Universalis Hereditaria 1 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955439 12551361 12729500 - 102016200 AGCD01035939;AGCD01035940;AGCD01035941;AGCD01035942;AGCD01035943;AGCD01035944;AGCD01035945;GBCE01076514;GBDI01179673;XM_013517361 XP_013372815 MODEL 9029606 pseudo LOC102019594 uncharacterized protein KIAA1143 pseudogene NW_004955475 12157531 12158860 + 102019594 AGCD01055183 MODEL 8789582 protein-coding Ppp2r5d protein phosphatase 2 regulatory subunit B'delta ENCODES a protein that exhibits protein phosphatase activator activity (ortholog); protein phosphatase regulator activity (ortholog); INVOLVED IN negative regulation of peptidyl-threonine phosphorylation (ortholog); PARTICIPATES IN dopamine signaling pathway; interleukin-2 signaling pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 35 (ortholog); brain disease (ortholog); Developmental Disabilities (ortholog); FOUND IN cytosol (ortholog) NW_004955437 8968517 8987680 + 102029443 AGCD01034512;GBCE01097976;GBDF01120912;XM_005389743 XP_005389800 MODEL 9063938 pseudo LOC102018363 60S ribosomal protein L36 pseudogene NW_004955454 3467514 3481312 + 102018363 AGCD01045080;AGCD01045081;AGCD01045082 MODEL 8849079 ncrna LOC102015375 uncharacterized LOC102015375 NW_004955407 23626174 23638539 - 102015375 AGCD01007431;XR_259578 MODEL 8901273 protein-coding Sec16a SEC16 homolog A, endoplasmic reticulum export factor INVOLVED IN endoplasmic reticulum organization (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); Golgi to plasma membrane transport (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955513 4272623 4304314 + 102005288 AGCD01066924;AGCD01066925;GBDK01008049;XM_005408487;XM_005408488;XM_013506686;XM_013506687;XM_013506688;XM_013506689;XM_013506690 XP_005408544;XP_005408545;XP_013362140;XP_013362141;XP_013362142;XP_013362143;XP_013362144 MODEL 8831055 protein-coding Ifi35 interferon induced protein 35 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN macrophage activation involved in immune response (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Human Influenza (ortholog); Spontaneous Abortions (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular space (ortholog) NW_004955451 16790998 16798993 + 102029254 AGCD01043707;GBBH01032363;XM_005394494 XP_005394551 MODEL 8767681 protein-coding LOC102010067 basic proline-rich protein-like NW_004955424 20327818 20328443 - 102010067 AGCD01024848;GBBH01018048;GBDK01212327;XM_013514645 XP_013370099 MODEL 8795038 protein-coding Usp34 ubiquitin specific peptidase 34 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); INVOLVED IN positive regulation of canonical Wnt signaling pathway (ortholog); protein K48-linked deubiquitination (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); chromosome 2p16.1-p15 deletion syndrome (ortholog); peroxisome biogenesis disorder 11A (ortholog) NW_004955424 22434292 22689944 + 102024256 AGCD01024968;AGCD01024969;AGCD01024970;AGCD01024971;AGCD01024972;AGCD01024973;AGCD01024974;AGCD01024975;AGCD01024976;AGCD01024977;AGCD01024978;AGCD01024979;GBDF01051988;XM_005385744;XM_013514602;XM_013514603;XM_013514604 XP_005385801;XP_013370056;XP_013370057;XP_013370058 MODEL 8819945 pseudo LOC102023768 tropomyosin alpha-4 chain pseudogene NW_004955626 97563 106569 + 102023768 AGCD01077466;AGCD01077467;AGCD01077468 MODEL 8859876 protein-coding Gpr87 G protein-coupled receptor 87 ENCODES a protein that exhibits G protein-coupled purinergic nucleotide receptor activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH glycogen storage disease XV (ortholog) NW_004955448 2403188 2424209 - 102029457 AGCD01041282;GBDI01322143;XM_005393022;XM_005393023 XP_005393079;XP_005393080 MODEL 8964548 pseudo LOC102003378 S-phase kinase-associated protein 1 pseudogene NW_004955537 3218460 3219427 - 102003378 AGCD01070953 MODEL 10204507 ncrna LOC106149210 uncharacterized LOC106149210 NW_004955440 15289593 15296663 + 106149210 AGCD01036487;XR_001235226;XR_001235227 MODEL 39132803 snrna U6 U6 spliceosomal RNA 39132949 misc_rna Y_RNA Y RNA 8914700 protein-coding Ppp2r5e protein phosphatase 2 regulatory subunit B'epsilon ASSOCIATED WITH Chromosomal Instability (ortholog); Micronuclei, Chromosome-Defective (ortholog); transient cerebral ischemia (ortholog); FOUND IN cytosol (ortholog) NW_004955466 6263338 6420685 + 102008518 AGCD01050923;AGCD01050924;AGCD01050925;AGCD01050926;AGCD01050927;GBDF01126130;XM_005399153;XM_005399154;XM_013521973 XP_005399210;XP_005399211;XP_013377427 MODEL 8843474 pseudo LOC102024094 coiled-coil domain-containing protein 152 pseudogene NW_004955458 3065969 3066651 + 102024094 AGCD01047269 MODEL 8764911 protein-coding LOC102007719 RNA polymerase II elongation factor ELL2-like NW_004955595 658812 660714 - 102007719 AGCD01076475;GBDF01287937;XM_005414679 XP_005414736 MODEL 8992031 protein-coding Gpr88 G protein-coupled receptor 88 ENCODES a protein that exhibits beta2-adrenergic receptor activity (ortholog); cytoskeletal motor activity (ortholog); INVOLVED IN adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); locomotory behavior (ortholog); ASSOCIATED WITH Childhood-Onset Chorea with Psychomotor Retardation (ortholog); maple syrup urine disease (ortholog); FOUND IN ciliary membrane (ortholog); cilium (ortholog); cytoplasm (ortholog) NW_004955435 5268746 5271237 + 102023189 AGCD01032879;AGCD01032880;GBDI01344475;XM_005389100 XP_005389157 MODEL 39132950 misc_rna Y_RNA Y RNA 8997938 protein-coding Erich5 glutamate rich 5 NW_004955417 13776609 13804241 + 102009607 AGCD01018191;GBDI01354833;XM_005381845;XM_005381846 XP_005381902;XP_005381903 MODEL 9059247 pseudo LOC102009264 mitochondrial import inner membrane translocase subunit Tim9 pseudogene NW_004955412 19546401 19547571 - 102009264 AGCD01012960 MODEL 8717825 protein-coding Mix23 mitochondrial matrix import factor 23 ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN mitochondrion (ortholog) NW_004955427 21639392 21667642 - 102009860 AGCD01027453;GBCQ01066280;XM_005386509;XM_005386510 XP_005386566;XP_005386567 MODEL 8823434 ncrna LOC102018027 uncharacterized LOC102018027 NW_004955437 7912514 7931491 - 102018027 AGCD01034474;AGCD01034475;GBDI01369509;XR_001235114;XR_001235115;XR_001235116 MODEL 8740779 protein-coding Tars1 threonyl-tRNA synthetase 1 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); threonine-tRNA ligase activity (ortholog); INVOLVED IN threonyl-tRNA aminoacylation (ortholog); ASSOCIATED WITH myositis (ortholog); Neurodevelopmental Disorders (ortholog); nonphotosensitive trichothiodystrophy 7 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955426 19086817 19110609 + 102026550 AGCD01026540;GBDF01159910;XM_013514933 XP_013370387 MODEL 8816785 ncrna LOC102019600 uncharacterized LOC102019600 NW_004955484 5180341 5313392 - 102019600 AGCD01058248;AGCD01058249;AGCD01058250;AGCD01058251;AGCD01058252;GBDF01193757;XR_263887;XR_263888 MODEL 9046681 ncrna LOC102009265 uncharacterized LOC102009265 NW_004955412 20503994 20512991 + 102009265 AGCD01013010;GBDF01155155;XR_260005 MODEL 8857148 ncrna LOC102020490 uncharacterized LOC102020490 NW_004955441 9358282 9362331 - 102020490 AGCD01037019;GBDF01209913;XR_262063 MODEL 8819094 protein-coding Neurod6 neuronal differentiation 6 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN dentate gyrus development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955410 32408052 32411273 - 102025096 AGCD01011339;XM_005377515 XP_005377572 MODEL 8866370 pseudo LOC102012388 serine/threonine-protein kinase VRK1-like NW_004955402 55411512 55414352 + 102012388 AGCD01001435 MODEL 9023936 ncrna LOC102003383 uncharacterized LOC102003383 NW_004955440 16475861 16478883 - 102003383 AGCD01036518;GBDF01286061;XR_262033 MODEL 10155494 ncrna LOC106149211 uncharacterized LOC106149211 NW_004955440 3589880 3590606 + 106149211 AGCD01036246;GBDK01033518;XR_001235228 MODEL 8922323 protein-coding Dhrs13 dehydrogenase/reductase 13 NW_004955481 4270948 4276774 + 102019500 AGCD01056933;GBDF01146621;XM_005402708 XP_005402765 MODEL 8726076 protein-coding Kmt2a lysine methyltransferase 2A ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); circadian regulation of gene expression (ortholog); PARTICIPATES IN DNA modification pathway; histone modification pathway; ASSOCIATED WITH Acute Erythroleukemia (ortholog); acute lymphoblastic leukemia (ortholog); acute monocytic leukemia (ortholog); FOUND IN cytosol (ortholog); histone methyltransferase complex (ortholog); MLL1 complex (ortholog) NW_004955412 19586435 19670149 + 102010237 AGCD01012966;AGCD01012967;AGCD01012968;GBBH01208480;GBCE01008536;XM_005378244 XP_005378301 MODEL 8760907 ncrna LOC102027123 uncharacterized LOC102027123 NW_004955446 6423181 6434207 - 102027123 AGCD01040097;GBCE01059194;XR_001235694 MODEL 8765934 protein-coding Ppp3ca protein phosphatase 3 catalytic subunit alpha ENCODES a protein that exhibits ATPase binding (ortholog); calcium-dependent protein serine/threonine phosphatase activity (ortholog); calmodulin binding (ortholog); INVOLVED IN calcineurin-mediated signaling (ortholog); calcineurin-NFAT signaling cascade (ortholog); calcium ion transport (ortholog); PARTICIPATES IN calcineurin signaling pathway; dopamine signaling pathway; interleukin-12 signaling pathway; ASSOCIATED WITH Arthrogryposis, Cleft Palate, Craniosynostosis, and Impaired Intellectual Development (ortholog); autism spectrum disorder (ortholog); beta-mannosidosis (ortholog); FOUND IN calcineurin complex (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955496 6934542 7059745 + 102019410 AGCD01062372;GBCB01004825;GBCQ01066605;XM_013505393 XP_013360847 MODEL 8787602 protein-coding Tnfsf11 TNF superfamily member 11 ENCODES a protein that exhibits cytokine activity (ortholog); identical protein binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); bone development (ortholog); bone resorption (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; ASSOCIATED WITH Alveolar Bone Loss (ortholog); autosomal recessive osteopetrosis 2 (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog) NW_004955518 431401 462063 + 102003574 AGCD01067735;GBCE01044414;XM_005409050;XM_005409053;XM_005409054;XM_005409055;XM_013506972 XP_005409107;XP_005409110;XP_005409111;XP_005409112;XP_013362426 MODEL 8725467 protein-coding LOC102012389 PRAME family member 6-like NW_004955618 32981 36268 - 102012389 AGCD01077283;AGCD01077284;XM_013510147 XP_013365601 MODEL 9045788 protein-coding Bmp4 bone morphogenetic protein 4 ENCODES a protein that exhibits BMP receptor binding (ortholog); chemoattractant activity (ortholog); co-receptor binding (ortholog); INVOLVED IN ameloblast differentiation (ortholog); anatomical structure formation involved in morphogenesis (ortholog); anatomical structure regression (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; glypican signaling pathway; ASSOCIATED WITH ACTH-secreting pituitary adenoma (ortholog); Acute Otitis Media (ortholog); Alzheimer's disease (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog); vesicle (ortholog) NW_004955409 9432835 9439680 + 102005114 AGCD01009440;AGCD01009441;GBCQ01040326;XM_005376769;XM_005376770 XP_005376826;XP_005376827 MODEL 8727921 protein-coding Dhrs3 dehydrogenase/reductase 3 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); all-trans-retinol dehydrogenase (NADP+) activity (ortholog); INVOLVED IN bone morphogenesis (ortholog); cardiac septum morphogenesis (ortholog); negative regulation of retinoic acid receptor signaling pathway (ortholog); PARTICIPATES IN retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Craniosynostosis Syndrome, Autosomal Recessive (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955486 1439179 1473476 + 102024235 AGCD01058955;AGCD01058956;GBCE01028543;XM_005403948 XP_005404005 MODEL 8917527 protein-coding LOC102015378 uncharacterized LOC102015378 NW_004955456 15179606 15184141 + 102015378 AGCD01046663;GBCE01179145;XM_013520598;XR_262907;XR_262908 XP_013376052 MODEL 8806191 protein-coding Erich6 glutamate rich 6 ASSOCIATED WITH glycogen storage disease XV (ortholog); FOUND IN nucleus (ortholog) NW_004955448 1827296 1860699 - 102025958 AGCD01041270;GBDF01054023;XM_005393013;XM_013518579 XP_005393070;XP_013374033 MODEL 8967721 ncrna LOC102024703 uncharacterized LOC102024703 NW_004955424 16916805 16925884 - 102024703 AGCD01024755;GBDF01076538;XR_001234153;XR_001234154;XR_261071 MODEL 10281984 ncrna LOC106150052 uncharacterized LOC106150052 NW_004955462 8680506 8687963 + 106150052 AGCD01049324;GBCE01042961;XR_001236618 MODEL 8817193 protein-coding Lrig1 leucine rich repeats and immunoglobulin like domains 1 INVOLVED IN hair cycle process (ortholog); innervation (ortholog); otolith morphogenesis (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog) NW_004955421 21108609 21219293 + 102006585 AGCD01022104;AGCD01022105;AGCD01022106;GBBH01065474;GBDJ01088361;XM_013513717 XP_013369171 MODEL 8995980 pseudo LOC102019601 N-alpha-acetyltransferase 50 pseudogene NW_004955419 564842 565381 + 102019601 AGCD01019595 MODEL 8738738 ncrna LOC102026093 uncharacterized LOC102026093 NW_004955413 1319222 1323485 - 102026093 AGCD01013519;AGCD01013520;XR_001232933;XR_001232934;XR_260047 MODEL 8910796 protein-coding Sec16b SEC16 homolog B, endoplasmic reticulum export factor INVOLVED IN endoplasmic reticulum organization (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); peroxisome fission (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); Body Weight (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN endoplasmic reticulum exit site (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955406 17458699 17509379 - 102022162 AGCD01006011;GBDK01263428;XM_013520997;XM_013521001;XM_013521007;XM_013521010;XM_013521012;XM_013521014 XP_013376451;XP_013376455;XP_013376461;XP_013376464;XP_013376466;XP_013376468 MODEL 39132804 snrna U6 U6 spliceosomal RNA 8834822 protein-coding Slc16a5 solute carrier family 16 member 5 NW_004955553 1969371 1996170 + 102019441 AGCD01072910;AGCD01072911;GBBH01219043;XM_013508643;XM_013508644;XM_013508645;XM_013508646;XM_013508647 XP_013364097;XP_013364098;XP_013364099;XP_013364100;XP_013364101 MODEL 10214947 protein-coding LOC106146948 translation initiation factor IF-2-like NW_004955407 39250170 39266549 - 106146948 AGCD01007824;GBBH01146789;GBDJ01280374;XM_013506072 XP_013361526 MODEL 8877485 ncrna LOC102023031 uncharacterized LOC102023031 NW_004955417 10305485 10332256 + 102023031 AGCD01018071;GBDF01307283;XR_260471 MODEL 8772446 ncrna LOC102024095 uncharacterized LOC102024095 NW_004955460 10079307 10081202 + 102024095 AGCD01048572;GBDF01161695;XR_263045 MODEL 8766207 ncrna LOC102007380 uncharacterized LOC102007380 NW_004955445 17614758 17619898 - 102007380 AGCD01039895;GBDF01145045;XR_262349 MODEL 8704636 protein-coding Shf Src homology 2 domain containing F PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH AGAT deficiency (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955409 8219295 8227877 + 102021316 AGCD01009387;GBDJ01390482;XM_013510314;XM_013510315 XP_013365768;XP_013365769 MODEL 8818191 protein-coding LOC102019604 7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase ENCODES a protein that exhibits sterol 12-alpha-hydroxylase activity (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); positive regulation of intestinal cholesterol absorption (ortholog); response to cholesterol (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog) NW_004955420 27988067 27990637 + 102019604 AGCD01021466;GBCQ01087698;XM_005383508 XP_005383565 MODEL 9053574 ncrna LOC102017163 uncharacterized LOC102017163 NW_004955439 21098027 21098747 - 102017163 AGCD01036138;GBDF01010452;XR_261998 MODEL 8701367 protein-coding Vps37d VPS37D subunit of ESCRT-I ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); basal cell carcinoma (ortholog); FOUND IN ESCRT I complex (ortholog) NW_004955456 14064197 14067571 - 102025211 AGCD01046632;GBCE01185982;XM_005396773 XP_005396830 MODEL 39132952 misc_rna Y_RNA Y RNA 8809408 pseudo LOC102018364 lysophosphatidic acid receptor 1-like NW_004955454 3717699 3718824 - 102018364 AGCD01045095 MODEL 8703566 pseudo LOC102006253 elongation factor 1-alpha 1-like NW_004955420 25364489 25376572 + 102006253 AGCD01021353;AGCD01021354 MODEL 8975867 pseudo LOC102027126 UMP-CMP kinase pseudogene NW_004955448 1975338 1975960 + 102027126 AGCD01041272;XM_005393014 MODEL 8922304 protein-coding LOC102018034 uncharacterized LOC102018034 NW_004955555 1393477 1423035 + 102018034 AGCD01073077;AGCD01073078;AGCD01073079;AGCD01073080;GBDJ01124619;GBDK01349306;XM_013508755;XM_013508756;XM_013508757 XP_013364209;XP_013364210;XP_013364211 MODEL 8838343 pseudo LOC102017165 small ubiquitin-related modifier 2-like NW_004955547 2270428 2274639 - 102017165 AGCD01072266 MODEL 8878168 protein-coding LOC102019609 sulfotransferase 1A1 NW_004955493 6774927 6778161 - 102019609 AGCD01061137;GBCB01070177;XM_005405179;XM_013504816 XP_005405236;XP_013360270 MODEL 8814636 protein-coding LOC102021406 histone H2A INVOLVED IN mRNA processing (ortholog); nucleosome assembly (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN euchromatin (ortholog); nucleosome (ortholog) NW_004955593 911641 911919 + 102021406 AGCD01076404;GBDF01010904;GBDJ01218416;XM_005414637 XP_005414694 MODEL 39132953 misc_rna Y_RNA Y RNA 8881967 ncrna LOC102010070 uncharacterized LOC102010070 NW_004955500 4830109 4994911 - 102010070 AGCD01063812;AGCD01063813;AGCD01063814;AGCD01063815;AGCD01063816;AGCD01063817;AGCD01063818;AGCD01063819;AGCD01063820;GBBH01147088;XR_001231473;XR_001231474;XR_001231475;XR_001231476;XR_001231477;XR_001231478;XR_001231479;XR_001231480;XR_001231481;XR_001231482;XR_001231483;XR_264227 MODEL 8875293 protein-coding Bmp5 bone morphogenetic protein 5 ENCODES a protein that exhibits BMP receptor binding (ortholog); INVOLVED IN allantois development (ortholog); anterior head development (ortholog); BMP signaling pathway (ortholog); ASSOCIATED WITH Congenital Microtia (ortholog); Meier-Gorlin syndrome (ortholog); FOUND IN extracellular space (ortholog); vesicle (ortholog) NW_004955411 450674 557213 + 102003741 AGCD01011458;AGCD01011459;AGCD01011460;AGCD01011461;GBCE01076623;XM_005377586;XM_013510909 XP_005377643;XP_013366363 MODEL 8956268 protein-coding Erich6b glutamate rich 6B NW_004955518 3279721 3333159 - 102028567 AGCD01067798;AGCD01067799;GBDF01120562;XM_013506952 XP_013362406 MODEL 8742218 protein-coding LOC102013574 probable helicase senataxin NW_004955807 9139 18072 - 102013574 AGCD01078384;AGCD01078385;GBDJ01014667;XM_013510197 XP_013365651 MODEL 8925148 pseudo LOC102021413 40S ribosomal protein S16 pseudogene NW_004955404 19244236 19244674 + 102021413 AGCD01003639 MODEL 9041847 protein-coding Sec22a SEC22 homolog A, vesicle trafficking protein INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Primary Lymphedema with Myelodysplasia (ortholog) NW_004955427 22389552 22456149 + 102014266 AGCD01027466;AGCD01027467;AGCD01027468;GBDF01220231;XM_005386526;XM_013515189;XM_013515190 XP_005386583;XP_013370643;XP_013370644 MODEL 8982958 protein-coding Lrig2 leucine rich repeats and immunoglobulin like domains 2 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN innervation (ortholog); membrane protein ectodomain proteolysis (ortholog); negative regulation of axon regeneration (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Developmental Disabilities (ortholog); hereditary spastic paraplegia 47 (ortholog); FOUND IN growth cone (ortholog); intracellular vesicle (ortholog); membrane (ortholog) NW_004955435 16468300 16522503 + 102010624 AGCD01033332;AGCD01033333;GBCQ01065493;XM_005388976 XP_005389033 MODEL 10230953 ncrna LOC106146949 uncharacterized LOC106146949 NW_004955506 5742968 5745211 - 106146949 AGCD01065386;GBDF01176924;XR_001231602 MODEL 8770686 ncrna LOC102022665 uncharacterized LOC102022665 NW_004955406 12087669 12097907 - 102022665 AGCD01005907;GBDF01251069;XR_001236360;XR_001236361;XR_001236362 MODEL 8868165 ncrna LOC102021414 uncharacterized LOC102021414 NW_004955405 9213975 9218444 + 102021414 AGCD01004765;GBCB01021521;XR_259365 MODEL 8927205 protein-coding Shfl shiftless antiviral inhibitor of ribosomal frameshifting ENCODES a protein that exhibits identical protein binding (ortholog); ribosome binding (ortholog); RNA binding (ortholog); INVOLVED IN defense response to virus (ortholog); negative regulation of translational frameshifting (ortholog); negative regulation of viral genome replication (ortholog); ASSOCIATED WITH hereditary sensory neuropathy type 1E (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955495 1431677 1437035 + 102027994 AGCD01061690;AGCD01061691;GBCE01030619;GBDK01073870;XM_005405581 XP_005405638 MODEL 9058248 protein-coding Slc16a6 solute carrier family 16 member 6 ASSOCIATED WITH endometriosis (ortholog); FOUND IN basolateral plasma membrane (ortholog) NW_004955478 4449362 4467866 + 102027069 AGCD01055851;GBBH01055718;XM_005402118;XM_005402119 XP_005402175;XP_005402176 MODEL 8841427 pseudo LOC102008875 phosducin-like protein 3 pseudogene NW_004955427 21601337 21602111 + 102008875 AGCD01027451 MODEL 39132681 snrna U6 U6 spliceosomal RNA 8706190 protein-coding Kmt2b lysine methyltransferase 2B ENCODES a protein that exhibits histone H3K4 methyltransferase activity (ortholog); unmethylated CpG binding (ortholog); zinc ion binding (ortholog); INVOLVED IN DNA methylation-dependent constitutive heterochromatin formation (ortholog); maternal-to-zygotic transition of gene expression (ortholog); oocyte development (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN histone methyltransferase complex (ortholog); MLL1/2 complex (ortholog); nucleus (ortholog) NW_004955468 2813183 2834326 - 102024207 AGCD01051838;GBCE01008533;GBCE01008553;XM_013522393;XM_013522395 XP_013377847;XP_013377849 MODEL 8761460 protein-coding Ppp3cb protein phosphatase 3 catalytic subunit beta ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein serine/threonine phosphatase activity (ortholog); calmodulin binding (ortholog); INVOLVED IN calcineurin-mediated signaling (ortholog); calcineurin-NFAT signaling cascade (ortholog); calcium-ion regulated exocytosis (ortholog); PARTICIPATES IN calcineurin signaling pathway; dopamine signaling pathway; interleukin-12 signaling pathway; ASSOCIATED WITH aortic valve stenosis (ortholog); focal segmental glomerulosclerosis (ortholog); Left Ventricular Hypertrophy (ortholog); FOUND IN calcineurin complex (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955437 18323852 18377815 + 102016849 AGCD01034789;AGCD01034790;GBCB01006009;XM_005389972;XM_005389973;XM_005389974;XM_005389975;XM_005389976;XM_005389977;XM_013516758;XM_013516760;XM_013516761 XP_005390029;XP_005390030;XP_005390031;XP_005390032;XP_005390033;XP_005390034;XP_013372212;XP_013372214;XP_013372215 MODEL 8948285 protein-coding Ifih1 interferon induced with helicase C domain 1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); double-stranded RNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to exogenous dsRNA (ortholog); defense response to virus (ortholog); ASSOCIATED WITH Abnormal Reflexes (ortholog); Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 7 (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog) NW_004955449 11538869 11596502 + 102016765 AGCD01042091;AGCD01042092;GBDK01395379;XM_005393309 XP_005393366 MODEL 8875015 ncrna LOC102021415 uncharacterized LOC102021415 NW_004955405 29322874 29335910 + 102021415 AGCD01005251;GBDF01017084;XR_259408 MODEL 8773265 pseudo LOC102017166 microtubule-associated protein RP/EB family member 1 pseudogene NW_004955442 13267206 13268206 + 102017166 AGCD01037766;XM_005391316 MODEL 8993695 protein-coding Dhrs7b dehydrogenase/reductase 7B ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN adipose tissue development (ortholog); brown fat cell differentiation (ortholog); ether lipid biosynthetic process (ortholog); FOUND IN membrane (ortholog); nucleus (ortholog); peroxisome (ortholog) NW_004955577 1071904 1122204 + 102022241 AGCD01075435;AGCD01075436;GBDF01008512;XM_005413986;XM_005413987;XM_013509623 XP_005414043;XP_005414044;XP_013365077 MODEL 8880017 ncrna LOC102026094 uncharacterized LOC102026094 NW_004955413 6676261 6678841 + 102026094 AGCD01013768;AGCD01013769;GBDF01046613;XR_001233022 MODEL 39131837 snrna U1 U1 spliceosomal RNA 8722008 protein-coding LOC102019611 zinc finger protein 260-like NW_004955495 925423 929850 - 102019611 AGCD01061661;GBDJ01370795;GBDK01143905;XM_013505071 XP_013360525 MODEL 8860696 protein-coding Ppp3cc protein phosphatase 3 catalytic subunit gamma ENCODES a protein that exhibits calcium-dependent protein serine/threonine phosphatase activity (ortholog); calmodulin-dependent protein phosphatase activity (ortholog); INVOLVED IN calcineurin-NFAT signaling cascade (ortholog); penetration of zona pellucida (ortholog); positive regulation of synaptic vesicle endocytosis (ortholog); PARTICIPATES IN calcineurin signaling pathway; dopamine signaling pathway; ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); Genetic Predisposition to Disease (ortholog); keratoconus (ortholog); FOUND IN calcineurin complex (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955403 45915985 45969350 + 102008283 AGCD01002843;AGCD01002844;AGCD01002845;GBDJ01189557;GBDK01398281;XM_005373663 XP_005373720 MODEL 8776751 pseudo LOC102024097 transcription factor BTF3 homolog 4 pseudogene NW_004955460 13187620 13196978 + 102024097 AGCD01048674 MODEL 10095775 ncrna LOC106149212 uncharacterized LOC106149212 NW_004955440 3595697 3696720 + 106149212 AGCD01036246;AGCD01036247;XR_001235229 MODEL 8904424 protein-coding Erlec1 endoplasmic reticulum lectin 1 ENCODES a protein that exhibits unfolded protein binding (ortholog); INVOLVED IN ERAD pathway (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); Malocclusion, Angle Class III (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog) NW_004955441 19535425 19557960 + 102003697 AGCD01037349;AGCD01037350;AGCD01037351;AGCD01037352;GBBH01065712;GBDJ01003705;XM_013517526 XP_013372980 MODEL 8943228 protein-coding Dhrs7c dehydrogenase/reductase 7C ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); INVOLVED IN D-glucose import (ortholog); intracellular calcium ion homeostasis (ortholog); regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum (ortholog); FOUND IN longitudinal sarcoplasmic reticulum (ortholog); sarcoplasmic reticulum membrane (ortholog) NW_004955467 7330267 7341897 + 102008610 AGCD01051433;GBDI01135172;XM_005399376 XP_005399433 MODEL 9026820 protein-coding LOC102007382 cytochrome P450 3A9-like NW_004955573 1366578 1409840 + 102007382 AGCD01075045;AGCD01075046;AGCD01075047;AGCD01075048;GBDI01323456;XM_005413769;XM_005413770 XP_005413826;XP_005413827 MODEL 8952184 ncrna LOC102012393 uncharacterized LOC102012393 NW_004955403 55119286 55129586 - 102012393 AGCD01003110;GBDF01159103;XR_001234447;XR_259276 MODEL 10332450 protein-coding LOC106146950 uncharacterized LOC106146950 NW_004955407 41197166 41202561 + 106146950 AGCD01007861;XM_013506097 XP_013361551 MODEL 8878070 pseudo LOC102015382 olfactory receptor 12-like NW_004955458 2288891 2292223 + 102015382 AGCD01047223 MODEL 9002617 protein-coding Ppp3r1 protein phosphatase 3 regulatory subunit B, alpha ENCODES a protein that exhibits enzyme binding (ortholog); phosphatase binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN branching involved in blood vessel morphogenesis (ortholog); calcineurin-NFAT signaling cascade (ortholog); epithelial to mesenchymal transition (ortholog); PARTICIPATES IN calcineurin signaling pathway; interleukin-12 signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); autosomal dominant nonsyndromic deafness 58 (ortholog); dilated cardiomyopathy (ortholog); FOUND IN calcineurin complex (ortholog); glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog) NW_004955424 16624214 16690783 + 102022718 AGCD01024746;AGCD01024747;AGCD01024748;GBDF01190278;XM_005385670;XM_005385671;XM_005385672 XP_005385727;XP_005385728;XP_005385729 MODEL 39132682 snrna U6 U6 spliceosomal RNA 8714317 protein-coding Tfcp2 transcription factor CP2 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN mRNA transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955547 1608631 1675331 - 102021920 AGCD01072234;AGCD01072235;AGCD01072236;AGCD01072237;AGCD01072238;AGCD01072239;GBDI01324425;GBDJ01132761;XM_005411895 XP_005411952 MODEL 9005465 protein-coding LOC102008878 olfactory receptor 5AN1-like NW_004955511 3869171 3870109 + 102008878 AGCD01066479;XM_005408266 XP_005408323 MODEL 8854217 ncrna LOC102003132 uncharacterized LOC102003132 NW_004955417 30984825 30997985 + 102003132 AGCD01018637;GBDF01119746;XR_001233438;XR_001233439;XR_001233440;XR_001233441;XR_001233442 MODEL 8910507 protein-coding Sash3 SAM and SH3 domain containing 3 INVOLVED IN B cell homeostasis (ortholog); B cell proliferation (ortholog); CD4-positive, alpha-beta T cell differentiation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Charcot-Marie-Tooth disease type X (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955473 5224635 5237066 - 102012856 AGCD01053973;GBBH01090094;XM_005401258 XP_005401315 MODEL 39132683 snrna U6 U6 spliceosomal RNA 8811918 pseudo LOC102008879 protein kinase C iota type pseudogene NW_004955430 16780162 16781452 + 102008879 AGCD01029645 MODEL 8979519 ncrna LOC102023036 uncharacterized LOC102023036 NW_004955483 8469720 8483504 + 102023036 AGCD01057837;GBDF01162509;XR_001231031;XR_263870 MODEL 8753054 protein-coding Tfcp2l1 transcription factor CP2 like 1 ENCODES a protein that exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell morphogenesis (ortholog); cytoplasm organization (ortholog); determination of adult lifespan (ortholog); ASSOCIATED WITH chronic kidney disease (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); nucleus (ortholog) NW_004955459 8657188 8716878 + 102015292 AGCD01048145;GBCQ01006055;XM_005397647;XM_005397648 XP_005397704;XP_005397705 MODEL 9065764 protein-coding Mixl1 Mix paired-like homeobox ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN cell migration involved in gastrulation (ortholog); digestive tract development (ortholog); endoderm development (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955489 418650 422428 + 102020346 AGCD01059804;GBCE01129938;GBDJ01123185;XM_013504451 XP_013359905 MODEL 8847922 protein-coding LOC102003136 histone H2A type 1-A INVOLVED IN chromatin organization (ortholog); FOUND IN female germ cell nucleus (ortholog) NW_004955483 1358562 1359048 + 102003136 AGCD01057645;GBDF01054005;XM_005403345 XP_005403402 MODEL 9053769 ncrna LOC102025121 uncharacterized LOC102025121 NW_004955418 20489068 20501173 + 102025121 AGCD01019228;GBDF01017286;XR_260574 MODEL 39132684 snrna U6 U6 spliceosomal RNA 8731093 ncrna LOC102018365 uncharacterized LOC102018365 NW_004955455 1202031 1214877 + 102018365 AGCD01045571;GBDK01265078;XR_262808 MODEL 10100650 pseudo LOC102003142 Ig heavy chain V-III region 23-like NW_004955487 14752 15297 - 102003142 AGCD01059204 MODEL 9056902 protein-coding LOC102027131 vomeronasal type-1 receptor 1-like NW_004955584 657373 658290 + 102027131 AGCD01075953;XM_005414415 XP_005414472 MODEL 10204683 ncrna LOC106150053 uncharacterized LOC106150053 NW_004955462 4487429 4569813 + 106150053 AGCD01049228;AGCD01049229;AGCD01049230;AGCD01049231;AGCD01049232;AGCD01049233;XR_001236624 MODEL 8948217 protein-coding Mki67 marker of proliferation Ki-67 ENCODES a protein that exhibits molecular condensate scaffold activity (ortholog); RNA binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); cell population proliferation (ortholog); cellular response to heat (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); adult pineal parenchymal tumor (ortholog); alcohol use disorder (ortholog); FOUND IN chromosome (ortholog); chromosome, centromeric region (ortholog); condensed chromosome (ortholog) NW_004955477 5847288 5875970 - 102016472 AGCD01055598;AGCD01055599;GBCC01049145;XM_013503022 XP_013358476 MODEL 8909393 protein-coding Tfdp1 transcription factor Dp-1 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN anoikis (ortholog); epidermis development (ortholog); negative regulation of fat cell proliferation (ortholog); ASSOCIATED WITH factor X deficiency (ortholog); juvenile rheumatoid arthritis (ortholog); mismatch repair cancer syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955404 371905 408441 - 102030377 AGCD01003199;GBDJ01355231;XM_005373938;XM_013515501 XP_005373995;XP_013370955 MODEL 8888727 protein-coding Shh sonic hedgehog signaling molecule ENCODES a protein that exhibits calcium ion binding (ortholog); cholesterol-protein transferase activity (ortholog); glycosaminoglycan binding (ortholog); INVOLVED IN alpha-beta T cell differentiation (ortholog); alpha-tubulin acetylation (ortholog); anatomical structure formation involved in morphogenesis (ortholog); PARTICIPATES IN altered Hedgehog signaling pathway; forkhead class A signaling pathway; glypican signaling pathway; ASSOCIATED WITH acrocallosal syndrome (ortholog); Anorectal Malformations (ortholog); atrioventricular septal defect (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); dendrite (ortholog) NW_004955491 8647133 8657381 - 102007024 AGCD01060619;AGCD01060620;GBCQ01149994;GBDK01027253;XM_013504572 XP_013360026 MODEL 10110073 protein-coding LOC106146951 uncharacterized LOC106146951 NW_004955407 42207496 42395082 + 106146951 AGCD01007887;AGCD01007888;AGCD01007889;AGCD01007890;AGCD01007891;GBDF01240951;XM_013506114 XP_013361568 MODEL 8706434 protein-coding Ppp3r2 protein phosphatase 3 regulatory subunit B, beta ENCODES a protein that exhibits calcium-dependent protein serine/threonine phosphatase regulator activity (ortholog); INVOLVED IN penetration of zona pellucida (ortholog); PARTICIPATES IN calcineurin signaling pathway; ASSOCIATED WITH fructose-1,6-bisphosphatase deficiency (ortholog); hereditary fructose intolerance syndrome (ortholog); intellectual disability (ortholog); FOUND IN calcineurin complex (ortholog); sperm flagellum (ortholog); sperm midpiece (ortholog) NW_004955419 24252772 24253730 + 102006666 AGCD01020340;GBDF01003998;XM_005382792 XP_005382849 MODEL 39131395 protein-coding VPS37D VPS37D subunit of ESCRT-I 9020528 protein-coding LOC102003148 RNA-binding protein FUS NW_004955493 8027419 8038171 + 102003148 AGCD01061257;GBDJ01020436;GBDK01016818;XM_013504880;XM_013504881 XP_013360334;XP_013360335 MODEL 8962943 protein-coding Mkks MKKS centrosomal shuttling protein ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN artery smooth muscle contraction (ortholog); brain morphogenesis (ortholog); cartilage development (ortholog); ASSOCIATED WITH ALAGILLE SYNDROME 1 (ortholog); Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 1 (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955415 20292311 20315850 - 102024668 AGCD01016487;GBCC01035939;XM_005380873;XM_005380874;XM_013512303;XM_013512304;XM_013512305;XM_013512306;XM_013512308;XR_001233228 XP_005380930;XP_005380931;XP_013367757;XP_013367758;XP_013367759;XP_013367760;XP_013367762 MODEL 8730423 protein-coding Tnfsf13b TNF superfamily member 13b INVOLVED IN B cell costimulation (ortholog); B cell differentiation (ortholog); B cell homeostasis (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Chronic Hepatitis B (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); focal adhesion (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955404 3536041 3573242 - 102023549 AGCD01003277;AGCD01003278;GBCQ01094161;GBDI01254603;XM_005374008 XP_005374065 MODEL 9056963 pseudo LOC102006254 rab11 family-interacting protein 5-like NW_004955421 18213737 18219501 - 102006254 AGCD01022039 MODEL 8992532 protein-coding Lrig3 leucine rich repeats and immunoglobulin like domains 3 INVOLVED IN otolith morphogenesis (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog) NW_004955458 6562167 6601517 - 102014328 AGCD01047563;AGCD01047564;GBCE01053955;GBDK01395878;XM_005397422 XP_005397479 MODEL 8777378 ncrna LOC102003152 uncharacterized LOC102003152 NW_004955495 7582405 7586650 + 102003152 AGCD01062154;XR_264168 MODEL 9032542 protein-coding Vps39 VPS39 subunit of HOPS complex INVOLVED IN autophagosome-lysosome fusion (ortholog); autophagy (ortholog); endocytic recycling (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); Breast Neoplasms (ortholog); cerebellar ataxia (ortholog); FOUND IN AP-3 adaptor complex (ortholog); HOPS complex (ortholog); late endosome (ortholog) NW_004955416 8893249 8936351 - 102018391 AGCD01017071;GBCE01074892;XM_005381326;XM_005381327 XP_005381383;XP_005381384 MODEL 8745785 protein-coding Ppp4c protein phosphatase 4 catalytic subunit ENCODES a protein that exhibits lamin binding (ortholog); phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN cellular response to interleukin-1 (ortholog); dephosphorylation (ortholog); negative regulation of protein phosphorylation (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955493 6894849 6901344 - 102022090 AGCD01061147;GBDF01000385;XM_005405187;XM_005405188 XP_005405244;XP_005405245 MODEL 8953501 protein-coding LOC102007386 vomeronasal type-1 receptor 1-like NW_004955584 327390 329695 + 102007386 AGCD01075939;GBDK01158023;XM_005414355 XP_005414412 MODEL 8972342 protein-coding Kmt2c lysine methyltransferase 2C ENCODES a protein that exhibits histone H3K4 methyltransferase activity (ortholog); histone methyltransferase activity (ortholog); INVOLVED IN eyelid development in camera-type eye (ortholog); multicellular organism growth (ortholog); positive regulation of fibroblast proliferation (ortholog); PARTICIPATES IN DNA modification pathway; histone modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); adenocarcinoma (ortholog); adenoid cystic carcinoma (ortholog); FOUND IN cytosol (ortholog); histone methyltransferase complex (ortholog); MLL3/4 complex (ortholog) NW_004955491 6245408 6420535 - 102012440 AGCD01060523;AGCD01060524;AGCD01060525;AGCD01060526;AGCD01060527;AGCD01060528;GBDI01116876;GBDI01135468;XM_013504577;XM_013504578;XM_013504579 XP_013360031;XP_013360032;XP_013360033 MODEL 8950980 pseudo LOC102021423 acid sphingomyelinase-like phosphodiesterase 3a pseudogene NW_004955408 15529175 15530254 - 102021423 AGCD01008420 MODEL 9019314 pseudo LOC102006259 programmed cell death protein 5 pseudogene NW_004955502 7085665 7086085 - 102006259 AGCD01064429;XM_005406906 MODEL 8998560 protein-coding LOC102003389 vomeronasal type-1 receptor 1-like NW_004955558 668713 669606 + 102003389 AGCD01073385;XM_005412740 XP_005412797 MODEL 8899671 protein-coding LOC102003153 CD70 antigen-like NW_004955495 2876196 2880324 + 102003153 AGCD01061808;GBDF01041568;XM_013505052 XP_013360506 MODEL 10389251 ncrna LOC106150054 uncharacterized LOC106150054 NW_004955462 5847653 5852321 - 106150054 AGCD01049263;XR_001236625 MODEL 8913008 ncrna LOC102027135 uncharacterized LOC102027135 NW_004955737 24525 28671 + 102027135 AGCD01078239;GBDF01052067;XR_265185 MODEL 9009272 ncrna LOC102028814 uncharacterized LOC102028814 NW_004955451 1297594 1300931 + 102028814 AGCD01042965;GBDF01262636;XR_262567 MODEL 8994573 ncrna LOC102026096 uncharacterized LOC102026096 NW_004955413 27267143 27271663 - 102026096 AGCD01014500;GBDF01083501;XR_001232991 MODEL 10256804 ncrna LOC106146952 uncharacterized LOC106146952 NW_004955506 629023 636749 + 106146952 AGCD01065234;GBBH01075961;XR_001231605 MODEL 8981675 protein-coding Tars2 threonyl-tRNA synthetase 2, mitochondrial ENCODES a protein that exhibits aminoacyl-tRNA editing activity (ortholog); protein homodimerization activity (ortholog); threonine-tRNA ligase activity (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 21 (ortholog); Failure to Thrive (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN mitochondrion (ortholog) NW_004955413 300142 314703 - 102012519 AGCD01013457;AGCD01013458;GBDF01087784;XM_005378677 XP_005378734 MODEL 39131843 snrna U1 U1 spliceosomal RNA 8952004 protein-coding Larp1 La ribonucleoprotein 1, translational regulator ENCODES a protein that exhibits eukaryotic initiation factor 4E binding (ortholog); mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to rapamycin (ortholog); mRNA stabilization (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); TORC1 complex (ortholog) NW_004955408 9002443 9080938 + 102004565 AGCD01008230;AGCD01008231;AGCD01008232;GBDF01306301;XM_013508665;XM_013508667;XM_013508668;XM_013508671;XM_013508674 XP_013364119;XP_013364121;XP_013364122;XP_013364125;XP_013364128 MODEL 9014487 ncrna LOC102024098 uncharacterized LOC102024098 NW_004955462 4008169 4011134 - 102024098 AGCD01049214;XR_263093 MODEL 8766112 pseudo LOC102003158 zinc transporter ZIP6 pseudogene NW_004955426 25050512 25052806 + 102003158 AGCD01026701 MODEL 8768360 protein-coding Neurog1 neurogenin 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); E-box binding (ortholog); INVOLVED IN auditory behavior (ortholog); cell fate commitment (ortholog); cochlea development (ortholog); ASSOCIATED WITH CRANIAL DYSINNERVATION DISORDER, CONGENITAL, WITH ABSENT CORNEAL REFLEX AND DEVELOPMENTAL DELAY (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN neuronal cell body (ortholog); perikaryon (ortholog) NW_004955408 30693893 30695453 - 102009580 AGCD01008814;GBDF01152747;XM_005376476 XP_005376533 MODEL 8755782 ncrna LOC102024709 uncharacterized LOC102024709 NW_004955508 5873874 5910430 - 102024709 AGCD01065910;AGCD01065911;GBDF01075758;XR_264396 MODEL 8795893 pseudo LOC102023040 actin-related protein 2/3 complex subunit 1A-like NW_004955420 13377017 13378758 + 102023040 AGCD01020920 MODEL 8992702 protein-coding Erlin1 ER lipid raft associated 1 ENCODES a protein that exhibits cholesterol binding (ortholog); INVOLVED IN ERAD pathway (ortholog); negative regulation of cholesterol biosynthetic process (ortholog); negative regulation of fatty acid biosynthetic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hereditary spastic paraplegia (ortholog); hereditary spastic paraplegia 62 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); protein-containing complex (ortholog) NW_004955507 6029247 6062946 - 102020593 AGCD01065695;GBDF01082079;XM_005407685;XM_005407686 XP_005407742;XP_005407743 MODEL 9039477 ncrna LOC102007724 uncharacterized LOC102007724 NW_004955403 45845767 45849351 - 102007724 AGCD01002838;GBDF01008253;XR_259240 MODEL 8764659 ncrna LOC102024099 uncharacterized LOC102024099 NW_004955463 6815241 6819726 - 102024099 AGCD01049706;GBDJ01170656;XR_001236633 MODEL 8889012 protein-coding Slc16a7 solute carrier family 16 member 7 ENCODES a protein that exhibits identical protein binding (ortholog); lactate transmembrane transporter activity (ortholog); pyruvate transmembrane transporter activity (ortholog); INVOLVED IN lactate transmembrane transport (ortholog); plasma membrane lactate transport (ortholog); pyruvate transmembrane transport (ortholog); ASSOCIATED WITH obesity (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog) NW_004955458 7232886 7352782 + 102014648 AGCD01047582;AGCD01047583;GBDF01156412;XM_005397423;XM_005397424;XM_005397425;XM_005397427 XP_005397480;XP_005397481;XP_005397482;XP_005397484 MODEL 8754620 protein-coding Spint1 serine peptidase inhibitor, Kunitz type 1 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN branching involved in labyrinthine layer morphogenesis (ortholog); cellular response to BMP stimulus (ortholog); embryonic placenta development (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); biliary atresia (ortholog); Bloom syndrome (ortholog); FOUND IN plasma membrane (ortholog) NW_004955416 7715536 7728759 + 102028531 AGCD01017005;AGCD01017006;AGCD01017007;GBDK01070594;XM_005381266;XM_013512623;XM_013512624;XM_013512625 XP_005381323;XP_013368077;XP_013368078;XP_013368079 MODEL 8891245 protein-coding Tnfsf14 TNF superfamily member 14 ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity involved in apoptotic process (ortholog); identical protein binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); positive regulation of myoblast differentiation (ortholog); positive regulation of myoblast fusion (ortholog); ASSOCIATED WITH IgA glomerulonephritis (ortholog); mucolipidosis type IV (ortholog); multiple sclerosis (ortholog) NW_004955495 2829314 2834826 + 102007031 AGCD01061803;GBDI01207122;XM_005405702 XP_005405759 MODEL 8720376 protein-coding LOC102005953 olfactory receptor 5B2-like NW_004955511 3211089 3212036 - 102005953 AGCD01066450;XM_013506385 XP_013361839 MODEL 8792067 protein-coding Yae1 YAE1 maturation factor of ABCE1 INVOLVED IN protein maturation (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955460 3900245 3904430 - 102018809 AGCD01048422;GBDF01046538;XM_005397731;XM_005397732;XM_013521094 XP_005397788;XP_005397789;XP_013376548 MODEL 9045257 protein-coding LOC102013576 janus kinase and microtubule-interacting protein 2-like NW_004956233 10107 11664 - 102013576 AGCD01079290;XM_005415183 XP_005415240 MODEL 8958593 protein-coding LOC102017168 mesothelin-like protein NW_004955442 16429918 16440136 + 102017168 AGCD01037900;GBBH01146203;XM_005391610 XP_005391667 MODEL 9030472 protein-coding Erlin2 ER lipid raft associated 2 ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN ERAD pathway (ortholog); negative regulation of cholesterol biosynthetic process (ortholog); negative regulation of fatty acid biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia (ortholog); hereditary spastic paraplegia 10 (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955463 13445468 13460370 + 102011633 AGCD01049867;GBBH01031754;XM_005398411;XM_013521497;XM_013521498 XP_005398468;XP_013376951;XP_013376952 MODEL 9008246 protein-coding LOC102024103 acrosomal protein SP-10-like NW_004955412 26731649 26733395 + 102024103 AGCD01013211;XM_005378471 XP_005378528 MODEL 9010583 ncrna LOC102021425 uncharacterized LOC102021425 NW_004955409 23740604 23772120 - 102021425 AGCD01010072;AGCD01010073;GBDK01264000;XR_259789 MODEL 8787079 pseudo LOC102009267 60S ribosomal protein L7a pseudogene NW_004955467 9883721 9884522 + 102009267 AGCD01051535 MODEL 8902009 protein-coding LOC102022667 complement factor H NW_004955406 33501759 33581744 + 102022667 AGCD01006478;AGCD01006479;AGCD01006480;AGCD01006481;AGCD01006482;AGCD01006483;GBCQ01035933;XM_005375112;XM_005375113 XP_005375169;XP_005375170 MODEL 8986576 protein-coding LOC102026097 taste receptor type 2 member 31-like NW_004955413 8238228 8239157 - 102026097 AGCD01013858;XM_005379634 XP_005379691 MODEL 10327993 ncrna LOC106146953 uncharacterized LOC106146953 NW_004955506 4640462 4654712 + 106146953 AGCD01065342;GBCB01113559;XR_001231616 MODEL 8717395 protein-coding Larp1b La ribonucleoprotein 1B ASSOCIATED WITH neuronal ceroid lipofuscinosis 7 (ortholog); prostate cancer (ortholog) NW_004955428 13319322 13427932 - 102015871 AGCD01027948;AGCD01027949;AGCD01027950;AGCD01027951;GBDK01309285;XM_013515251 XP_013370705 MODEL 8818837 protein-coding Tars3 threonyl-tRNA synthetase 3 ENCODES a protein that exhibits threonine-tRNA ligase activity (ortholog); INVOLVED IN threonyl-tRNA aminoacylation (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955416 28509229 28554050 - 102020007 AGCD01017630;AGCD01017631;AGCD01017632;GBCE01179632;GBDK01432440;XM_013512618 XP_013368072 MODEL 39132806 snrna U6 U6 spliceosomal RNA 8708001 ncrna LOC102018366 uncharacterized LOC102018366 NW_004955409 33777180 33840794 - 102018366 AGCD01010400;GBDF01249318;XR_259801 MODEL 8876911 pseudo LOC102022668 R3H domain-containing protein 2 pseudogene NW_004955454 3704267 3724341 - 102022668 AGCD01045095 MODEL 8929193 protein-coding Lrit1 leucine rich repeat, Ig-like and transmembrane domains 1 INVOLVED IN phototransduction (ortholog); response to light stimulus (ortholog); synaptic signaling (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); synapse (ortholog); synaptic cleft (ortholog) NW_004955510 3739957 3802081 - 102005493 AGCD01066247;GBDJ01166878;XM_005407886;XM_005407887;XR_001231669 XP_005407943;XP_005407944 MODEL 9002250 protein-coding LOC102007725 ubiquitin carboxyl-terminal hydrolase 16-like NW_004957393 10 1496 + 102007725 AGCD01080789;GBCC01037265;XM_013510251 XP_013365705 MODEL 8838403 protein-coding LOC102018376 apolipoprotein L2-like NW_004955413 22780940 22803083 - 102018376 AGCD01014317;GBDJ01239605;XM_013511518 XP_013366972 MODEL 10124285 ncrna LOC106149213 uncharacterized LOC106149213 NW_004955440 11904579 11923029 - 106149213 AGCD01036418;AGCD01036419;XR_001235231;XR_001235232 MODEL 10338047 pseudo LOC106150055 septin-2 pseudogene NW_004955463 230221 230867 - 106150055 AGCD01049478 MODEL 8768936 pseudo LOC102005954 ZZ-type zinc finger-containing protein 3 pseudogene NW_004955430 8912029 8917478 - 102005954 AGCD01029398 MODEL 8995959 protein-coding Sec22b SEC22 homolog B, vesicle trafficking protein ENCODES a protein that exhibits syntaxin binding (ortholog); INVOLVED IN negative regulation of autophagosome assembly (ortholog); positive regulation of protein catabolic process (ortholog); vesicle-mediated transport (ortholog); FOUND IN COPI-coated vesicle (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955568 1559519 1587782 + 102018869 AGCD01074547;AGCD01074548;AGCD01074549;AGCD01074550;GBDF01160336;XM_005413480 XP_005413537 MODEL 8791391 protein-coding Spint2 serine peptidase inhibitor, Kunitz type 2 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN basement membrane organization (ortholog); cellular response to BMP stimulus (ortholog); epithelial cell morphogenesis involved in placental branching (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); biliary atresia (ortholog); carcinoma (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955468 1142718 1181210 - 102020551 AGCD01051757;AGCD01051758;AGCD01051759;AGCD01051760;GBBH01003770;XM_005399867;XM_005399868;XM_013522432 XP_005399924;XP_005399925;XP_013377886 MODEL 8880759 ncrna LOC102020492 uncharacterized LOC102020492 NW_004955555 478674 504042 - 102020492 AGCD01073033;AGCD01073034;AGCD01073035;GBDF01009942;XR_001232300 MODEL 8954371 protein-coding Znf483 zinc finger protein 483 NW_004955419 15741368 15775100 - 102010487 AGCD01020089;GBDK01179046;XM_005382723;XM_013513204 XP_005382780;XP_013368658 MODEL 8966265 protein-coding Sass6 SAS-6 centriolar assembly protein INVOLVED IN centriole replication (ortholog); centrosome duplication (ortholog); positive regulation of centriole replication (ortholog); ASSOCIATED WITH genetic disease (ortholog); maple syrup urine disease (ortholog); primary autosomal recessive microcephaly 14 (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955435 4832284 4876077 - 102022223 AGCD01032855;AGCD01032856;AGCD01032857;AGCD01032858;AGCD01032859;AGCD01032860;GBDI01383796;GBDK01218416;XM_005389097 XP_005389154 MODEL 8843804 ncrna LOC102010072 uncharacterized LOC102010072 NW_004955426 20756048 20787650 - 102010072 AGCD01026575;GBBH01059919;XR_001234330;XR_001234331;XR_001234332 MODEL 39132685 snrna U6 U6 spliceosomal RNA 8955615 pseudo LOC102003162 cyclin-dependent kinase 11B pseudogene NW_004955428 12919987 12929693 + 102003162 AGCD01027939;XM_005386732 MODEL 39131431 protein-coding SPINT4 serine peptidase inhibitor, Kunitz type 4 8974669 pseudo LOC102007388 pre-mRNA-splicing factor RBM22 pseudogene NW_004955402 42301725 42303062 - 102007388 AGCD01001038 MODEL 8988544 protein-coding LOC102020494 cytochrome c oxidase subunit 7B, mitochondrial INVOLVED IN central nervous system development (ortholog); ASSOCIATED WITH alpha thalassemia-X-linked intellectual disability syndrome (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955557 1341934 1348610 + 102020494 AGCD01073290;GBCB01003743;XM_005412627 XP_005412684 MODEL 8994409 protein-coding LOC102023042 chromosome unknown open reading frame, human C1orf74 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); Van der Woude syndrome (ortholog) NW_004955489 2439927 2462748 + 102023042 AGCD01059871;GBCE01163253;XM_005404534;XM_005404535;XM_005404536;XM_005404537 XP_005404591;XP_005404592;XP_005404593;XP_005404594 MODEL 9016048 pseudo LOC102010073 nef-associated protein 1 pseudogene NW_004955503 3250978 3252092 - 102010073 AGCD01064620 MODEL 8885525 protein-coding LOC102009273 tripartite motif-containing protein 34 NW_004955414 21592178 21600802 + 102009273 AGCD01015423;AGCD01015424;GBDI01215595;XM_005380097;XM_005380098;XM_013512000;XM_013512001 XP_005380154;XP_005380155;XP_013367454;XP_013367455 MODEL 9045287 protein-coding Slc16a8 solute carrier family 16 member 8 ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); COVID-19 (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955413 24400621 24406754 - 102015095 AGCD01014364;AGCD01014365;AGCD01014366;GBBH01069709;GBCE01068470;XM_013511545 XP_013366999 MODEL 8835571 protein-coding Larp4 La ribonucleoprotein 4 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); poly(A) binding (ortholog); INVOLVED IN cytoskeleton organization (ortholog); positive regulation of translation (ortholog); post-transcriptional regulation of gene expression (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN cytoplasmic stress granule (ortholog); cytosol (ortholog); cytosolic small ribosomal subunit (ortholog) NW_004955547 930988 996877 + 102015987 AGCD01072197;AGCD01072198;AGCD01072199;AGCD01072200;GBDF01086402;XM_005411878;XM_005411880;XM_005411881;XM_005411882;XM_013508449;XM_013508450 XP_005411935;XP_005411937;XP_005411938;XP_005411939;XP_013363903;XP_013363904 MODEL 8948670 protein-coding Usp35 ubiquitin specific peptidase 35 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); ASSOCIATED WITH intellectual disability (ortholog) NW_004955414 13755604 13779049 - 102010249 AGCD01015117;AGCD01015118;AGCD01015119;GBCE01100978;GBDI01027115;XM_013512062 XP_013367516 MODEL 9040258 pseudo LOC102010074 mortality factor 4-like protein 1 pseudogene NW_004955427 22903386 22904350 - 102010074 AGCD01027478 MODEL 8771755 protein-coding Spire1 spire type actin nucleation factor 1 INVOLVED IN actin cytoskeleton organization (ortholog); behavioral fear response (ortholog); cleavage furrow formation (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); dystonia (ortholog); intellectual disability (ortholog); FOUND IN cell cortex (ortholog); cleavage furrow (ortholog); cytoplasmic vesicle membrane (ortholog) NW_004955402 920730 1011339 + 102010213 AGCD01000038;AGCD01000039;AGCD01000040;AGCD01000041;AGCD01000042;GBCB01058656;XM_005372557;XM_005372558;XM_005372559;XM_005372560 XP_005372614;XP_005372615;XP_005372616;XP_005372617 MODEL 8843695 protein-coding Tnfsf15 TNF superfamily member 15 INVOLVED IN activation of NF-kappaB-inducing kinase activity (ortholog); ASSOCIATED WITH Crohn's disease (ortholog); Enteritis (ortholog); Inflammation (ortholog); FOUND IN plasma membrane (ortholog) NW_004955419 12863617 12884498 + 102006778 AGCD01019987;GBCQ01154220;XM_005382621 XP_005382678 MODEL 8877065 ncrna LOC102007728 uncharacterized LOC102007728 NW_004955405 808318 848689 - 102007728 AGCD01004585;AGCD01004586;AGCD01004587;AGCD01004588;GBDF01303416;XR_259358 MODEL 9050043 pseudo LOC102025125 golgin subfamily A member 7 pseudogene NW_004955419 5623710 5624828 + 102025125 AGCD01019830 MODEL 8868211 protein-coding LOC102023047 chromosome unknown open reading frame, human C11orf68 ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog) NW_004955422 19409368 19410742 + 102023047 AGCD01023006;GBDF01003352;GBDJ01088971;XM_013514329 XP_013369783 MODEL 10134918 ncrna LOC106150056 uncharacterized LOC106150056 NW_004955406 21861759 21862914 - 106150056 AGCD01006148;GBDJ01302264;XR_001236628 MODEL 9040459 pseudo LOC102015385 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955460 13496374 13531311 - 102015385 AGCD01048692;AGCD01048693;AGCD01048694;AGCD01048695;AGCD01048696;AGCD01048697 MODEL 8788500 protein-coding Slc16a9 solute carrier family 16 member 9 ENCODES a protein that exhibits carnitine transmembrane transporter activity (ortholog); creatine transmembrane transporter activity (ortholog); INVOLVED IN carnitine transmembrane transport (ortholog); creatine transmembrane transport (ortholog); urate metabolic process (ortholog); FOUND IN plasma membrane (ortholog) NW_004955425 13249903 13300705 - 102013521 AGCD01025529;GBCQ01010027;XM_005385930;XM_005385931;XM_005385932;XM_005385933;XM_013514881;XM_013514882 XP_005385987;XP_005385988;XP_005385989;XP_005385990;XP_013370335;XP_013370336 MODEL 8720941 ncrna LOC102005963 uncharacterized LOC102005963 NW_004955526 3269899 3285554 + 102005963 AGCD01069333;AGCD01069334;GBDI01352716;XR_001231967;XR_001231968;XR_264661 MODEL 39131393 protein-coding NEUROG2 neurogenin 2 8852292 ncrna LOC102003164 uncharacterized LOC102003164 NW_004955428 25464176 25472249 + 102003164 AGCD01028284;GBDF01123213;XR_261308 MODEL 8901578 protein-coding LOC102025126 glutathione S-transferase omega-1 NW_004955485 6391364 6403112 - 102025126 AGCD01058618;GBCB01001864;GBDJ01025506;XM_005403783 XP_005403840 MODEL 8947781 protein-coding LOC102023050 zinc finger protein 709-like NW_004955494 8410747 8423126 - 102023050 AGCD01061584;GBDF01210638;XM_005405519;XM_005405520 XP_005405576;XP_005405577 MODEL 8962479 pseudo LOC102003391 pre-mRNA-splicing factor RBM22 pseudogene NW_004955443 7720328 7734609 + 102003391 AGCD01038296;AGCD01038297 MODEL 8775179 ncrna LOC102013584 uncharacterized LOC102013584 NW_004955456 7084779 7090828 + 102013584 AGCD01046384;GBDF01281673;XR_001236335 MODEL 8856806 protein-coding Tas1r1 taste 1 receptor member 1 ENCODES a protein that exhibits taste receptor activity (ortholog); INVOLVED IN sensory perception of umami taste (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955486 6056501 6065038 - 102007774 AGCD01059105;AGCD01059106;GBBH01067179;XM_005404078 XP_005404135 MODEL 9040476 protein-coding LOC102017173 vomeronasal type-2 receptor 116-like NW_004955563 2059415 2099231 - 102017173 AGCD01074170;AGCD01074171;AGCD01074172;AGCD01074173;AGCD01074174;AGCD01074175;AGCD01074176;AGCD01074177;AGCD01074178;AGCD01074179;XM_013509130 XP_013364584 MODEL 8709960 protein-coding Erln endoregulin INVOLVED IN negative regulation of ATPase-coupled calcium transmembrane transporter activity (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955506 6590028 6592474 - 102014927 AGCD01065432;GBDF01040884;XM_005407489 XP_005407546 MODEL 8839501 protein-coding Dhrs9 dehydrogenase/reductase 9 ENCODES a protein that exhibits alcohol dehydrogenase (NAD+) activity (ortholog); all-trans-retinol dehydrogenase (NAD+) activity (ortholog); androstan-3-alpha,17-beta-diol dehydrogenase (NAD+) activity (ortholog); INVOLVED IN 9-cis-retinoic acid biosynthetic process (ortholog); androgen metabolic process (ortholog); progesterone metabolic process (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Birth Weight (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955449 5360486 5380279 - 102030487 AGCD01041929;GBDF01028240;XM_005393265;XM_013518802 XP_005393322;XP_013374256 MODEL 9057989 protein-coding Ifit1 interferon induced protein with tetratricopeptide repeats 1 ENCODES a protein that exhibits enzyme inhibitor activity (ortholog); RNA binding (ortholog); RNA sequestering activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to exogenous dsRNA (ortholog); cellular response to type I interferon (ortholog); ASSOCIATED WITH autoimmune lymphoproliferative syndrome (ortholog); endometriosis (ortholog); Human Influenza (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955425 3581705 3588528 - 102016075 AGCD01025294;GBDJ01403433;XM_005385850 XP_005385907 MODEL 8870365 protein-coding Larp4b La ribonucleoprotein 4B ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); INVOLVED IN positive regulation of 3'-UTR-mediated mRNA stabilization (ortholog); positive regulation of translation (ortholog); ASSOCIATED WITH Familial Prostate Cancer (ortholog); myoepithelioma (ortholog); FOUND IN cytoplasmic stress granule (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955492 113900 197753 + 102011324 AGCD01060628;GBCQ01150926;XM_005404909;XM_005404910;XM_005404912;XM_013504697;XM_013504698;XM_013504699 XP_005404966;XP_005404967;XP_005404969;XP_013360151;XP_013360152;XP_013360153 MODEL 8772249 protein-coding Gpr89a G protein-coupled receptor 89A ENCODES a protein that exhibits voltage-gated monoatomic anion channel activity (ortholog); INVOLVED IN intracellular pH reduction (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); skin development (ortholog); ASSOCIATED WITH cataract 46 juvenile-onset (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN Golgi cisterna membrane (ortholog); Golgi-associated vesicle membrane (ortholog) NW_004955568 436817 493188 - 102009771 AGCD01074514;AGCD01074515;AGCD01074516;AGCD01074517;AGCD01074518;AGCD01074519;AGCD01074520;GBDF01126235;XM_005413448;XM_005413449;XM_005413450 XP_005413505;XP_005413506;XP_005413507 MODEL 9034323 protein-coding Usp36 ubiquitin specific peptidase 36 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); histone H2B deubiquitinase activity (ortholog); K48-linked deubiquitinase activity (ortholog); INVOLVED IN chromatin organization (ortholog); negative regulation of macroautophagy (ortholog); nucleolus organization (ortholog); ASSOCIATED WITH Idiopathic Generalized Epilepsy (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleolus (ortholog) NW_004955506 3824598 3861919 + 102004302 AGCD01065319;AGCD01065320;GBDF01013840;XM_005407366;XM_005407368;XM_005407369;XM_013506110 XP_005407423;XP_005407425;XP_005407426;XP_013361564 MODEL 8974076 protein-coding Znf484 zinc finger protein 484 NW_004955422 23899088 23922351 + 102014459 AGCD01023210;GBDF01073982;XM_005384709;XM_013513986;XM_013513987 XP_005384766;XP_013369440;XP_013369441 MODEL 8904660 protein-coding Tas1r2 taste 1 receptor member 2 ENCODES a protein that exhibits sweet taste receptor activity (ortholog); taste receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of sweet taste (ortholog); positive regulation of cytokinesis (ortholog); sensory perception of sweet taste (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); FOUND IN receptor complex (ortholog); sweet taste receptor complex (ortholog) NW_004955527 377269 392833 + 102018219 AGCD01069383;GBDF01112496;XM_013507373 XP_013362827 MODEL 9055836 protein-coding Bmp6 bone morphogenetic protein 6 ENCODES a protein that exhibits BMP receptor binding (ortholog); growth factor activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); bone development (ortholog); cellular response to BMP stimulus (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH Acute Otitis Media (ortholog); adult T-cell leukemia/lymphoma (ortholog); allergic contact dermatitis (ortholog); FOUND IN enzyme activator complex (ortholog); extracellular space (ortholog); vesicle (ortholog) NW_004955465 6053600 6201254 - 102020895 AGCD01050437;AGCD01050438;GBCE01031404;GBCQ01095928;XM_013521839 XP_013377293 MODEL 8927603 protein-coding Ifit2 interferon induced protein with tetratricopeptide repeats 2 INVOLVED IN antiviral innate immune response (ortholog); cellular response to interferon-alpha (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH autoimmune lymphoproliferative syndrome (ortholog); COVID-19 (ortholog); Human Influenza (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955425 3685626 3692482 - 102016400 AGCD01025295;GBDK01239902;XM_005385851 XP_005385908 MODEL 39132807 snrna U6 U6 spliceosomal RNA 8924748 pseudo LOC102023774 60S ribosomal protein L9 pseudogene NW_004955406 21120653 21145098 + 102023774 AGCD01006119 MODEL 8719759 protein-coding LOC102007390 EKC/KEOPS complex subunit LAGE3-like NW_004955595 891199 900679 + 102007390 AGCD01076488;AGCD01076489;AGCD01076490;GBDK01408734;XM_005414678 XP_005414735 MODEL 9042278 protein-coding Yaf2 YY1 associated factor 2 ENCODES a protein that exhibits transcription coactivator activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amenorrhea (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955500 1531884 1626335 - 102029985 AGCD01063657;AGCD01063658;AGCD01063659;AGCD01063660;AGCD01063661;AGCD01063662;AGCD01063663;AGCD01063664;AGCD01063665;AGCD01063666;AGCD01063667;GBBH01107030;XM_005406575;XR_001231508;XR_001231509;XR_001231510;XR_001231511 XP_005406632 MODEL 8700796 ncrna LOC102027136 uncharacterized LOC102027136 NW_004955403 35908296 35923201 - 102027136 AGCD01002526;GBDF01211604;XR_259227;XR_259228 MODEL 8848976 ncrna LOC102009277 uncharacterized LOC102009277 NW_004955474 12346167 12355317 - 102009277 AGCD01054658;GBDK01287845;XR_001230737;XR_001230738 MODEL 9019001 protein-coding Lrit2 leucine rich repeat, Ig-like and transmembrane domains 2 NW_004955510 3732436 3736557 - 102021154 AGCD01066247;XM_005407931 XP_005407988 MODEL 9029342 protein-coding Bmp7 bone morphogenetic protein 7 ENCODES a protein that exhibits BMP receptor binding (ortholog); growth factor activity (ortholog); heparin binding (ortholog); INVOLVED IN allantois development (ortholog); ameloblast differentiation (ortholog); anatomical structure formation involved in morphogenesis (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH acute kidney tubular necrosis (ortholog); Acute Otitis Media (ortholog); atrial heart septal defect 8 (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular space (ortholog); vesicle (ortholog) NW_004955445 2154057 2235594 + 102006504 AGCD01039351;GBDK01182189;XM_005392260 XP_005392317 MODEL 8870504 protein-coding LOC102018035 sialic acid-binding Ig-like lectin 8 NW_004955558 1238069 1248047 - 102018035 AGCD01073424;GBBH01137499;XM_005412701;XM_013508887;XM_013508888;XM_013508889;XM_013508890;XM_013508891;XM_013508892;XM_013508893;XM_013508894;XR_001232331;XR_001232332 XP_005412758;XP_013364341;XP_013364342;XP_013364343;XP_013364344;XP_013364345;XP_013364346;XP_013364347;XP_013364348 MODEL 8890792 ncrna LOC102018379 uncharacterized LOC102018379 NW_004955470 856113 859567 - 102018379 AGCD01052624;GBDF01054789;XR_263455 MODEL 8923122 ncrna LOC102023779 uncharacterized LOC102023779 NW_004955458 3513180 3516126 + 102023779 AGCD01047313;AGCD01047314;GBDF01187994;XR_262971 MODEL 9005114 ncrna LOC102024710 uncharacterized LOC102024710 NW_004955429 22551477 22563361 - 102024710 AGCD01029030;GBDI01287282;XR_261393 MODEL 8879409 protein-coding LOC102007735 uncharacterized LOC102007735 NW_004955455 3711041 3735232 - 102007735 AGCD01045648;XM_005396209;XR_001236266 XP_005396266 MODEL 8838849 protein-coding Tnfsf18 TNF superfamily member 18 ENCODES a protein that exhibits identical protein binding (ortholog); tumor necrosis factor receptor superfamily binding (ortholog); INVOLVED IN activated CD4-positive, alpha-beta T cell proliferation (ortholog); negative regulation of T-helper 17 cell lineage commitment (ortholog); positive regulation of cell adhesion (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); autoimmune lymphoproliferative syndrome (ortholog); FOUND IN cell surface (ortholog) NW_004955406 13391162 13402479 - 102004670 AGCD01005937;XM_005374865 XP_005374922 MODEL 39132686 snrna U6 U6 spliceosomal RNA 8878591 pseudo LOC102008880 10 kDa heat shock protein, mitochondrial pseudogene NW_004955512 3112785 3135884 - 102008880 AGCD01066696 MODEL 8822182 ncrna LOC102024711 uncharacterized LOC102024711 NW_004955430 7926384 7937421 + 102024711 AGCD01029378;GBDF01306876;XR_261422 MODEL 8703255 protein-coding Gprasp1 G protein-coupled receptor associated sorting protein 1 INVOLVED IN endosome to lysosome transport (ortholog); G protein-coupled receptor catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN cytosol (ortholog) NW_004955548 132373 137817 + 102020290 AGCD01072319;GBDI01177597;XM_005411968 XP_005412025 MODEL 8987458 protein-coding LOC102005965 cytochrome b-c1 complex subunit 1, mitochondrial ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN mitochondrial electron transport, ubiquinol to cytochrome c (ortholog); response to activity (ortholog); response to alkaloid (ortholog); PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); Alzheimer's disease (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex III (ortholog) NW_004955532 685315 691286 - 102005965 AGCD01070144;GBDF01007354;XM_013507657 XP_013363111 MODEL 8951356 protein-coding Usp37 ubiquitin specific peptidase 37 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); protein kinase binding (ortholog); INVOLVED IN G1/S transition of mitotic cell cycle (ortholog); protein deubiquitination (ortholog); protein K11-linked deubiquitination (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); myofibrillar myopathy 1 (ortholog); FOUND IN nucleus (ortholog) NW_004955453 14846044 14931336 + 102009681 AGCD01044875;AGCD01044876;AGCD01044877;GBDF01305373;XM_005395644;XM_013519868;XM_013519869;XM_013519870;XM_013519871 XP_005395701;XP_013375322;XP_013375323;XP_013375324;XP_013375325 MODEL 8912876 protein-coding LOC102015388 cytochrome b5 reductase 4 ENCODES a protein that exhibits cytochrome-b5 reductase activity, acting on NAD(P)H (ortholog); flavin adenine dinucleotide binding (ortholog); heme binding (ortholog); INVOLVED IN cell development (ortholog); glucose homeostasis (ortholog); insulin secretion (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN endoplasmic reticulum (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955411 11424923 11508193 + 102015388 AGCD01011819;AGCD01011820;AGCD01011821;AGCD01011822;GBDI01325383;XM_005377692;XM_013510896 XP_005377749;XP_013366350 MODEL 9007408 protein-coding LOC102025127 somatostatin-like NW_004955420 20082135 20083273 + 102025127 AGCD01021071;XM_005383250 XP_005383307 MODEL 8812282 protein-coding LOC102020495 orphan sodium- and chloride-dependent neurotransmitter transporter NTT5-like NW_004955559 1511172 1525751 + 102020495 AGCD01073647;GBDF01128186;XM_005412896;XM_005412897;XM_005412898 XP_005412953;XP_005412954;XP_005412955 MODEL 10173099 pseudo LOC106149214 ubiquitin carboxyl-terminal hydrolase 1-like NW_004955440 2567486 2570536 - 106149214 AGCD01036213 MODEL 8723030 ncrna LOC102024714 uncharacterized LOC102024714 NW_004955432 8842134 8844999 - 102024714 AGCD01030888;GBDF01208020;XR_261515 MODEL 8846315 pseudo LOC102005969 protein FAM204A pseudogene NW_004955438 15499120 15499834 + 102005969 AGCD01035370 MODEL 10135385 pseudo LOC106146954 CAP-Gly domain-containing linker protein 1 pseudogene NW_004955507 443760 445206 + 106146954 AGCD01065474 MODEL 8839380 protein-coding LOC102026101 olfactory receptor 52E2-like NW_004955414 20567868 20568821 + 102026101 AGCD01015380;XM_005380475 XP_005380532 MODEL 8840724 protein-coding Yap1 Yes1 associated transcriptional regulator ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); proline-rich region binding (ortholog); INVOLVED IN blastocyst development (ortholog); bud elongation involved in lung branching (ortholog); canonical Wnt signaling pathway (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); ataxia telangiectasia (ortholog); Brain Neoplasms (ortholog); FOUND IN cell junction (ortholog); cell-cell junction (ortholog); cytoplasm (ortholog) NW_004955412 5423866 5533728 + 102010882 AGCD01012633;AGCD01012634;GBBH01090880;GBDF01046541;XM_013511126 XP_013366580 MODEL 8860734 pseudo LOC102009279 60S ribosomal protein L34 pseudogene NW_004955477 5072715 5073707 + 102009279 AGCD01055590 MODEL 8786586 protein-coding Vps41 VPS41 subunit of HOPS complex ENCODES a protein that exhibits identical protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN endosomal vesicle fusion (ortholog); endosome to lysosome transport (ortholog); Golgi vesicle transport (ortholog); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 29 (ortholog); genetic disease (ortholog); hyperimmunoglobulinemia D periodic fever syndrome (ortholog); FOUND IN AP-3 adaptor complex (ortholog); clathrin complex (ortholog); clathrin-coated vesicle (ortholog) NW_004955460 4555870 4749154 + 102019892 AGCD01048438;AGCD01048439;AGCD01048440;AGCD01048441;GBCQ01062358;XM_005397734;XM_013521234;XR_001236534;XR_001236535 XP_005397791;XP_013376688 MODEL 8934951 protein-coding Lrit3 leucine rich repeat, Ig-like and transmembrane domains 3 INVOLVED IN gene expression (ortholog); protein localization (ortholog); regulation of fibroblast growth factor receptor signaling pathway (ortholog); ASSOCIATED WITH congenital stationary night blindness (ortholog); congenital stationary night blindness 1F (ortholog); fundus dystrophy (ortholog); FOUND IN cell tip (ortholog); dendrite (ortholog) NW_004955496 434236 456239 - 102024356 AGCD01062227;AGCD01062228;XM_005406184 XP_005406241 MODEL 8956902 protein-coding Shisa2 shisa family member 2 INVOLVED IN negative regulation of fibroblast growth factor receptor signaling pathway (ortholog); negative regulation of Wnt signaling pathway (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955497 5453682 5459680 - 102024702 AGCD01062593;GBCE01134715;GBDK01235162;XM_005406336 XP_005406393 MODEL 10065053 protein-coding LOC106150057 uncharacterized LOC106150057 NW_004955463 13414812 13446351 - 106150057 AGCD01049866;AGCD01049867;XM_013521491 XP_013376945 MODEL 8904982 pseudo LOC102007740 39S ribosomal protein L47, mitochondrial pseudogene NW_004955459 7511838 7512274 + 102007740 AGCD01048113 MODEL 8943135 ncrna LOC102028815 uncharacterized LOC102028815 NW_004955451 10956830 10959261 - 102028815 AGCD01043337;GBCB01089371;XR_262590 MODEL 39132687 snrna U6 U6 spliceosomal RNA 8993599 protein-coding Ifit3 interferon induced protein with tetratricopeptide repeats 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to interferon-beta (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); autoimmune lymphoproliferative syndrome (ortholog); congestive heart failure (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955425 3671303 3692478 - 102016726 AGCD01025295;XM_013514858 XP_013370312 MODEL 8988645 ncrna LOC102023055 uncharacterized LOC102023055 NW_004955426 24038441 24060641 + 102023055 AGCD01026665;GBDF01111157;XR_001234309;XR_261219 MODEL 10209624 ncrna LOC106150058 uncharacterized LOC106150058 NW_004955463 12929242 12935961 - 106150058 AGCD01049860;GBDF01165326;XR_001236629 MODEL 8959704 protein-coding LOC102003392 WAP four-disulfide core domain protein 10A NW_004955445 11634309 11635726 - 102003392 AGCD01039708;GBDF01230954;XM_005392420 XP_005392477 MODEL 8717195 ncrna LOC102008881 uncharacterized LOC102008881 NW_004955520 1038221 1056799 - 102008881 AGCD01068041;AGCD01068042;GBDF01278076;XR_264581 MODEL 8832471 pseudo LOC102017177 protein slowmo homolog 2 pseudogene NW_004955447 18086601 18087624 + 102017177 AGCD01041153 MODEL 8741937 ncrna LOC102027137 uncharacterized LOC102027137 NW_004955452 4042960 4045203 - 102027137 AGCD01043963;GBBH01069461;XR_001236114 MODEL 8726923 pseudo LOC102020496 long-chain-fatty-acid--CoA ligase 4 pseudogene NW_004955567 204423 206599 - 102020496 AGCD01074386 MODEL 8911382 protein-coding Sat1 spermidine/spermine N1-acetyltransferase 1 ENCODES a protein that exhibits diamine N-acetyltransferase activity (ortholog); identical protein binding (ortholog); N-acetyltransferase activity (ortholog); INVOLVED IN angiogenesis (ortholog); polyamine biosynthetic process (ortholog); polyamine catabolic process (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; polyamine metabolic pathway; spermidine metabolic pathway; ASSOCIATED WITH allergic contact dermatitis (ortholog); anxiety disorder (ortholog); autistic disorder (ortholog) NW_004955509 4198876 4202103 + 102015032 AGCD01066057;AGCD01066058;AY533231;GBCE01002359;XM_005407833;XM_013506302 AAS59433;XP_005407890;XP_013361756 MODEL 8965466 ncrna LOC102018040 uncharacterized LOC102018040 NW_004955577 358724 365029 - 102018040 AGCD01075392;GBDF01178865;XR_001232463;XR_265079 MODEL 8954218 pseudo LOC102003393 zinc finger protein 14-like NW_004955569 1162650 1186999 - 102003393 AGCD01074643;XM_005413495 MODEL 10130399 pseudo LOC106149215 zinc finger protein 793-like NW_004955440 2763081 2764352 + 106149215 AGCD01036219 MODEL 8823269 protein-coding Bmpr1a bone morphogenetic protein receptor type 1A ENCODES a protein that exhibits ATP binding (ortholog); BMP binding (ortholog); BMP receptor activity (ortholog); INVOLVED IN angiogenesis (ortholog); anterior/posterior pattern specification (ortholog); atrioventricular node cell development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH B-lymphoblastic leukemia/lymphoma with ETV6-RUNX1 (ortholog); breast cancer (ortholog); chromosome 10q23 deletion syndrome (ortholog); FOUND IN caveola (ortholog); cell surface (ortholog); dendrite (ortholog) NW_004955510 5812571 5936312 + 102011346 AGCD01066293;AGCD01066294;AGCD01066295;AGCD01066296;AGCD01066297;GBBH01207322;GBBH01207324;XM_005407907 XP_005407964 MODEL 8727967 pseudo LOC102027141 dnaJ homolog subfamily A member 1-like NW_004955453 12648342 12650208 + 102027141 AGCD01044835 MODEL 8814366 protein-coding Kmt2d lysine methyltransferase 2D ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); histone H3K4 methyltransferase activity (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN heterochromatin formation (ortholog); in utero embryonic development (ortholog); oocyte growth (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 26 (ortholog); BRANCHIAL ARCH ABNORMALITIES, CHOANAL ATRESIA, ATHELIA, HEARING LOSS, AND HYPOTHYROIDISM SYNDROME (ortholog); FOUND IN MLL3/4 complex (ortholog) NW_004955500 7850782 7891703 - 102012005 AGCD01063954;AGCD01063955;GBBH01197901;GBDI01132691;XM_013505675;XM_013505676;XM_013505677;XM_013505678;XM_013505679 XP_013361129;XP_013361130;XP_013361131;XP_013361132;XP_013361133 MODEL 8748222 protein-coding Larp6 La ribonucleoprotein 6, translational regulator ENCODES a protein that exhibits mRNA 5'-UTR binding (ortholog); myosin binding (ortholog); RNA stem-loop binding (ortholog); INVOLVED IN positive regulation of collagen biosynthetic process (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955450 6050260 6073388 + 102010435 AGCD01042518;GBDJ01313471;XM_005393640;XM_005393641 XP_005393697;XP_005393698 MODEL 8801082 protein-coding LOC102003167 olfactory receptor 5D13-like NW_004955511 533129 545086 + 102003167 AGCD01066333;XM_005408198 XP_005408255 MODEL 8916423 pseudo LOC102024104 mth938 domain-containing protein pseudogene NW_004955466 13831017 13831425 + 102024104 AGCD01051187 MODEL 39131442 protein-coding LRMDA leucine rich melanocyte differentiation associated 8810315 protein-coding Yars1 tyrosyl-tRNA synthetase 1 ENCODES a protein that exhibits small molecule binding (ortholog); tyrosine-tRNA ligase activity (ortholog); INVOLVED IN response to starvation (ortholog); tyrosyl-tRNA aminoacylation (ortholog); PARTICIPATES IN phenylketonuria pathway; tyrosinemia type II pathway; tyrosinemia type III pathway; ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955452 11046047 11078016 - 102029820 AGCD01044322;AGCD01044323;GBDF01118229;XM_005395094 XP_005395151 MODEL 8889216 protein-coding LOC102022087 zinc finger protein OZF-like NW_004955421 22041918 22093237 + 102022087 AGCD01022127;GBBH01210033;XM_013513778;XM_013513779;XM_013513780;XM_013513781 XP_013369232;XP_013369233;XP_013369234;XP_013369235 MODEL 8794623 protein-coding Shisa3 shisa family member 3 INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955443 5367306 5372091 - 102008900 AGCD01038236;GBCQ01012580;XM_005391921;XM_013518028;XM_013518029 XP_005391978;XP_013373482;XP_013373483 MODEL 8965842 protein-coding Mkln1 muskelin 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cell-matrix adhesion (ortholog); neurotransmitter receptor transport postsynaptic membrane to endosome (ortholog); ASSOCIATED WITH acrodermatitis (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cell cortex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955410 36251987 36568537 - 102007975 AGCD01011422;AGCD01011423;AGCD01011424;AGCD01011425;AGCD01011426;AGCD01011427;AGCD01011428;AGCD01011429;AGCD01011430;AGCD01011431;GBCB01023173;XM_005377547;XM_005377548;XM_013510638;XR_259906 XP_005377604;XP_005377605;XP_013366092 MODEL 8804326 protein-coding Kmt2e lysine methyltransferase 2E (inactive) ENCODES a protein that exhibits enzyme binding (ortholog); histone H3 methyltransferase activity (ortholog); histone H3K4me3 reader activity (ortholog); INVOLVED IN epigenetic regulation of gene expression (ortholog); erythrocyte differentiation (ortholog); neutrophil activation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN chromatin (ortholog); euchromatin (ortholog); nuclear body (ortholog) NW_004955410 9714587 9808021 + 102016792 AGCD01010773;AGCD01010774;AGCD01010775;AGCD01010776;GBBH01001089;XM_005377563 XP_005377620 MODEL 39132688 snrna U6 U6 spliceosomal RNA 8787326 protein-coding LOC102025135 epithelial chloride channel protein-like NW_004955423 7433747 7456786 - 102025135 AGCD01023601;AGCD01023602;AGCD01023603;GBDF01286325;XM_005385357 XP_005385414 MODEL 8896606 protein-coding Spire2 spire type actin nucleation factor 2 INVOLVED IN actin cytoskeleton organization (ortholog); cleavage furrow formation (ortholog); establishment of meiotic spindle localization (ortholog); ASSOCIATED WITH autosomal recessive chronic granulomatous disease 4 (ortholog); familial melanoma (ortholog); Fanconi anemia (ortholog); FOUND IN cell cortex (ortholog); cleavage furrow (ortholog); cytoplasmic vesicle membrane (ortholog) NW_004955541 3341705 3359646 + 102017814 AGCD01071442;GBDJ01072643;GBDJ01072649;XM_013507994;XM_013507995;XM_013507997 XP_013363448;XP_013363449;XP_013363451 MODEL 9003403 ncrna LOC102022098 uncharacterized LOC102022098 NW_004955495 5175818 5177703 - 102022098 AGCD01061979;GBDF01120725;XR_001231368 MODEL 8714236 protein-coding LOC102019614 olfactory receptor 10T2-like NW_004955495 8054019 8062946 - 102019614 AGCD01062177;XM_005406177 XP_005406234 MODEL 9015823 pseudo LOC102018380 olfactory receptor 51F1-like NW_004955414 20378324 20379265 - 102018380 AGCD01015371 MODEL 8982673 ncrna LOC102022671 uncharacterized LOC102022671 NW_004955407 26763176 26800372 + 102022671 AGCD01007537;GBDF01013649;XR_259589 MODEL 8708820 protein-coding LOC102025137 melanoma-associated antigen 10-like NW_004955498 4797137 4797895 + 102025137 AGCD01063020;GBDF01246816;XM_005406487 XP_005406544 MODEL 9017060 protein-coding Tnfsf4 TNF superfamily member 4 ENCODES a protein that exhibits tumor necrosis factor receptor binding (ortholog); tumor necrosis factor receptor superfamily binding (ortholog); INVOLVED IN acute inflammatory response (ortholog); CD4-positive, alpha-beta T cell costimulation (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); autoimmune lymphoproliferative syndrome (ortholog); FOUND IN cell surface (ortholog); extracellular space (ortholog) NW_004955406 13477077 13493309 - 102005005 AGCD01005938;XM_005374866 XP_005374923 MODEL 39132809 snrna U6 U6 spliceosomal RNA 8712441 protein-coding Kmt5a lysine methyltransferase 5A ENCODES a protein that exhibits histone H4K20 methyltransferase activity (ortholog); histone methyltransferase activity (ortholog); protein-lysine N-methyltransferase activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of double-strand break repair via homologous recombination (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN histone modification pathway; methionine cycle/metabolic pathway; p53 signaling pathway; ASSOCIATED WITH prostate cancer (ortholog); short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955482 5488151 5500764 - 102027186 AGCD01057337;AGCD01057338;AGCD01057339;GBCQ01093635;GBDI01180644;XM_013503555 XP_013359009 MODEL 8766947 protein-coding LOC102012401 myotubularin-related protein 3-like NW_004955455 4250135 4256614 - 102012401 AGCD01045673;GBDK01132871;XM_005396226;XM_005396227 XP_005396283;XP_005396284 MODEL 8753350 pseudo LOC102003398 ubiquitin domain-containing protein 2 pseudogene NW_004955633 68363 69344 + 102003398 AGCD01077591 MODEL 8794918 protein-coding Vps45 vacuolar protein sorting 45 homolog ASSOCIATED WITH Familial Myelofibrosis (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN endosome membrane (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955413 615510 680564 - 102019584 AGCD01013482;AGCD01013483;AGCD01013484;GBCE01008447;XM_005378700 XP_005378757 MODEL 9054330 pseudo LOC102013585 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4-like NW_004955456 11429523 11430045 + 102013585 AGCD01046551 MODEL 8863564 pseudo LOC102027142 tripartite motif-containing protein 44 pseudogene NW_004955454 5514927 5515885 - 102027142 AGCD01045175 MODEL 8758640 protein-coding Sec22c SEC22 homolog C, vesicle trafficking protein ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog) NW_004955420 28210912 28227015 + 102028198 AGCD01021472;AGCD01021473;GBCQ01013530;XM_005383543;XM_005383544;XM_013513579;XM_013513580 XP_005383600;XP_005383601;XP_013369033;XP_013369034 MODEL 9010649 pseudo LOC102025138 ribosome-recycling factor, mitochondrial pseudogene NW_004955424 15678952 15680946 - 102025138 AGCD01024722 MODEL 8727392 protein-coding LOC102007742 probable C-mannosyltransferase DPY19L2 NW_004955460 7871421 7960495 + 102007742 AGCD01048500;AGCD01048501;AGCD01048502;AGCD01048503;AGCD01048504;AGCD01048505;AGCD01048506;AGCD01048507;AGCD01048508;GBDF01196111;XM_013521290;XM_013521291;XM_013521292 XP_013376744;XP_013376745;XP_013376746 MODEL 39132810 snrna U6 U6 spliceosomal RNA 9044348 protein-coding Usp38 ubiquitin specific peptidase 38 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN negative regulation of innate immune response (ortholog); negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); protein K33-linked deubiquitination (ortholog); FOUND IN cytoplasm (ortholog) NW_004955471 316319 350982 - 102009595 AGCD01052954;GBCB01020102;XM_005400854 XP_005400911 MODEL 9041395 protein-coding LOC102024105 T-cell surface glycoprotein CD1b2-like NW_004955468 10193294 10196217 + 102024105 AGCD01052071;XM_005400146;XM_005400147 XP_005400203;XP_005400204 MODEL 8701050 protein-coding Dhrsx dehydrogenase/reductase X-linked ENCODES a protein that exhibits dolichal reductase [NAD(P)+] activity (ortholog); polyprenol dehydrogenase activity (ortholog); INVOLVED IN dolichol biosynthetic process (ortholog); positive regulation of autophagy (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Congenital disorder of glycosylation, type 1DD (ortholog); FOUND IN extracellular region (ortholog); lipid droplet (ortholog) NW_004955499 1360636 1471141 - 102010069 AGCD01063348;AGCD01063349;AGCD01063350;AGCD01063351;AGCD01063352;AGCD01063353;AGCD01063354;AGCD01063355;GBCB01024741;GBDF01253653;XM_005406518;XM_013505592 XP_005406575;XP_013361046 MODEL 8878040 protein-coding Tfdp2 transcription factor Dp-2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN heart development (ortholog); negative regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH COVID-19 (ortholog); malignant mesothelioma (ortholog); FOUND IN mitotic spindle (ortholog); nucleoplasm (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955508 3722412 3844340 + 102015031 AGCD01065832;AGCD01065833;AGCD01065834;AGCD01065835;AGCD01065836;AGCD01065837;AGCD01065838;AGCD01065839;GBBH01207991;XM_005407749;XM_005407752;XM_013506253;XM_013506254;XM_013506255;XM_013506256;XM_013506257 XP_005407806;XP_005407809;XP_013361707;XP_013361708;XP_013361709;XP_013361710;XP_013361711 MODEL 39132812 snrna U6 U6 spliceosomal RNA 10105215 protein-coding Znf488 zinc finger protein 488 INVOLVED IN negative regulation of DNA-templated transcription (ortholog); oligodendrocyte development (ortholog); positive regulation of myelination (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN nucleus (ortholog) NW_004955556 2227805 2237874 - 106146271 AGCD01073208;GBCQ01087586;XM_005412615 XP_005412672 MODEL 8878228 protein-coding Spmap1 sperm microtubule associated protein 1 NW_004955451 13888362 13891524 - 102020739 AGCD01043512;AGCD01043513;GBDF01000383;XM_005394287 XP_005394344 MODEL 8767974 protein-coding LOC102020497 uncharacterized LOC102020497 NW_004955568 63033 69208 + 102020497 AGCD01074502;XM_013509327 XP_013364781 MODEL 9058790 protein-coding LOC102019616 melanoma-associated antigen 10-like NW_004955498 2708546 2709343 - 102019616 AGCD01062827;XM_005406472 XP_005406529 MODEL 9024400 protein-coding LOC102023780 aromatase ENCODES a protein that exhibits aromatase activity (ortholog); heme binding (ortholog); oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen (ortholog); INVOLVED IN adrenal gland development (ortholog); androgen catabolic process (ortholog); androgen metabolic process (ortholog); PARTICIPATES IN aromatase inhibitor pathway; estradiol biosynthetic pathway; steroid hormone biosynthetic pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Alzheimer's disease (ortholog); amenorrhea (ortholog); FOUND IN axon terminus (ortholog); dendritic spine (ortholog); endoplasmic reticulum (ortholog) NW_004955409 3198622 3313072 + 102023780 AGCD01009236;AGCD01009237;AGCD01009238;AGCD01009239;GBDF01304411;XM_005376647;XM_005376648;XM_005376649;XM_005376650;XM_005376651;XM_005376652 XP_005376704;XP_005376705;XP_005376706;XP_005376707;XP_005376708;XP_005376709 MODEL 9037775 gene LOC102018382 Ig heavy chain V-I region 5-like NW_004955470 467752 468318 - 102018382 AGCD01052614;XM_005400820 MODEL 8934593 pseudo LOC102007392 aldose reductase-related protein 2 pseudogene NW_004955450 13309903 13310837 + 102007392 AGCD01042733 MODEL 8810544 pseudo LOC102015390 40S ribosomal protein S4-like NW_004955465 13917721 13921061 - 102015390 AGCD01050636 MODEL 8869393 protein-coding Tnfsf8 TNF superfamily member 8 INVOLVED IN CD8-positive, alpha-beta T cell differentiation (ortholog); defense response to Gram-positive bacterium (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adult T-cell leukemia/lymphoma (ortholog); autosomal dominant nonsyndromic deafness 56 (ortholog) NW_004955419 12763343 12790044 + 102006461 AGCD01019984;GBDF01227732;XM_005382620 XP_005382677 MODEL 8958546 protein-coding LOC102012404 olfactory receptor 6C74-like NW_004955458 2414762 2415699 - 102012404 AGCD01047233;XM_013520846 XP_013376300 MODEL 9058724 protein-coding Ermap erythroblast membrane associated protein (Scianna blood group) ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); glucose transporter type 1 deficiency syndrome 1 (ortholog); hemolytic disease of the fetus (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955537 2340282 2360925 + 102016848 AGCD01070925;AGCD01070926;AGCD01070927;GBBH01072402;XM_013507744;XM_013507745 XP_013363198;XP_013363199 MODEL 8738993 protein-coding Ifit5 interferon induced protein with tetratricopeptide repeats 5 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); poly(U) RNA binding (ortholog); RNA binding (ortholog); INVOLVED IN defense response to virus (ortholog); negative regulation of viral genome replication (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH autoimmune lymphoproliferative syndrome (ortholog); Human Influenza (ortholog); Wolman disease (ortholog); FOUND IN actin cytoskeleton (ortholog); apical part of cell (ortholog); IkappaB kinase complex (ortholog) NW_004955425 3569448 3575043 - 102015970 AGCD01025292;GBDF01065309;XM_013514766 XP_013370220 MODEL 8749243 pseudo LOC102018383 E3 ubiquitin-protein ligase RNF13 pseudogene NW_004955472 5453123 5454314 + 102018383 AGCD01053579 MODEL 8796371 protein-coding Shisa4 shisa family member 4 ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog) NW_004955406 37959156 37961972 + 102019664 AGCD01006581;GBCB01005287;GBCE01115144;XM_013522274 XP_013377728 MODEL 8900909 protein-coding Mknk1 MAPK interacting serine/threonine kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN extrinsic apoptotic signaling pathway in absence of ligand (ortholog); intracellular signal transduction (ortholog); peptidyl-serine phosphorylation (ortholog); PARTICIPATES IN cyclooxygenase mediated pathway of arachidonic acid metabolism; p38 MAPK signaling pathway; the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955464 11697946 11750258 + 102016359 AGCD01050161;XM_005398664;XM_005398665;XM_005398666;XM_005398667;XM_005398668;XM_005398669;XM_013521634;XM_013521635;XM_013521636 XP_005398721;XP_005398722;XP_005398723;XP_005398724;XP_005398725;XP_005398726;XP_013377088;XP_013377089;XP_013377090 MODEL 8808180 pseudo LOC102012409 5-azacytidine-induced protein 2 pseudogene NW_004955409 26519198 26520981 - 102012409 AGCD01010189 MODEL 8858946 pseudo LOC102026104 nuclease-sensitive element-binding protein 1 pseudogene NW_004955475 6440727 6441856 + 102026104 AGCD01054973 MODEL 8735904 protein-coding LOC102022099 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 NW_004955423 16160378 16174472 - 102022099 AGCD01023824;GBDF01176664;XM_013514557;XM_013514558 XP_013370011;XP_013370012 MODEL 8903862 protein-coding Neurog2 neurogenin 2 ENCODES a protein that exhibits E-box binding (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN axon guidance (ortholog); Cajal-Retzius cell differentiation (ortholog); cell fate commitment (ortholog); ASSOCIATED WITH aniridia (ortholog); Axenfeld-Rieger syndrome type 1 (ortholog); FOUND IN nucleus (ortholog) NW_004955457 14268078 14287050 + 102005999 AGCD01047065;AGCD01047066;AGCD01047067;AGCD01047068;GBDI01318797;XM_013520669 XP_013376123 MODEL 9060254 pseudo LOC102018045 laccase domain-containing protein 1-like NW_004955592 623122 623565 - 102018045 AGCD01076320 MODEL 8990641 protein-coding Dhtkd1 dehydrogenase E1 and transketolase domain containing 1 ENCODES a protein that exhibits 2-oxoadipate dehydrogenase activity (ortholog); INVOLVED IN generation of precursor metabolites and energy (ortholog); hematopoietic progenitor cell differentiation (ortholog); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; glutaric aciduria type I pathway; hyperlysinemia pathway; ASSOCIATED WITH 2-aminoadipic 2-oxoadipic aciduria (ortholog); Charcot-Marie-Tooth disease axonal type 2Q (ortholog); Charcot-Marie-Tooth Disease Type 2A2 (ortholog); FOUND IN mitochondrion (ortholog); oxoadipate dehydrogenase complex (ortholog) NW_004955462 103501 163472 + 102004909 AGCD01049069;AGCD01049070;AGCD01049071;GBBH01075996;XM_005398075;XM_013521370 XP_005398132;XP_013376824 MODEL 8911095 protein-coding Tfe3 transcription factor binding to IGHM enhancer 3 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN humoral immune response (ortholog); lysosome organization (ortholog); negative regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lysosomal membrane (ortholog) NW_004955543 547037 561073 - 102004521 AGCD01071591;GBDK01017184;XM_005411307;XM_005411309;XM_005411310 XP_005411364;XP_005411366;XP_005411367 MODEL 39131305 protein-coding ZNF488 zinc finger protein 488 9061830 protein-coding Gprasp2 G protein-coupled receptor associated sorting protein 2 ENCODES a protein that exhibits amyloid-beta binding (ortholog); G protein-coupled receptor binding (ortholog); INVOLVED IN hematopoietic stem cell homeostasis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955548 172442 202686 + 102020613 AGCD01072322;AGCD01072323;GBDF01252846;XM_013508532;XM_013508533;XM_013508534;XM_013508535;XM_013508536;XR_001232250 XP_013363986;XP_013363987;XP_013363988;XP_013363989;XP_013363990 MODEL 8706866 ncrna LOC102020499 uncharacterized LOC102020499 NW_004955574 228074 230012 + 102020499 AGCD01075093;GBCB01123138;XR_265057;XR_265058 MODEL 8899282 protein-coding Larp7 La ribonucleoprotein 7, transcriptional regulator ENCODES a protein that exhibits 7SK snRNA binding (ortholog); U6 snRNA binding (ortholog); INVOLVED IN box C/D sno(s)RNA 3'-end processing (ortholog); germ cell proliferation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Alazami Syndrome (ortholog); Alazami-Yuan Syndrome (ortholog); aniridia (ortholog); FOUND IN 7SK snRNP (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955457 14178674 14200164 - 102019245 AGCD01047061;AGCD01047062;GBCQ01067465;XM_005397097;XM_005397098 XP_005397154;XP_005397155 MODEL 8998177 pseudo LOC102018046 eukaryotic translation initiation factor 5 pseudogene NW_004955596 640860 643263 + 102018046 AGCD01076525 MODEL 8881560 ncrna LOC102023059 uncharacterized LOC102023059 NW_004955429 15249622 15251278 + 102023059 AGCD01028799;XR_261334 MODEL 10184994 ncrna LOC106150059 uncharacterized LOC106150059 NW_004955463 5329698 5357309 + 106150059 AGCD01049638;GBDF01014914;XR_001236630 MODEL 8878333 protein-coding Lrmda leucine rich melanocyte differentiation associated INVOLVED IN melanocyte differentiation (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); genetic disease (ortholog); Genitopatellar Syndrome (ortholog) NW_004955437 15678397 16173214 - 102024845 AGCD01034694;AGCD01034695;AGCD01034696;AGCD01034697;AGCD01034698;AGCD01034699;AGCD01034700;GBCB01043098;XM_013516966 XP_013372420 MODEL 8786155 protein-coding LOC102006262 60S acidic ribosomal protein P1-like NW_004955506 3889447 3890523 - 102006262 AGCD01065321;XM_005407374;XM_005407375 XP_005407431;XP_005407432 MODEL 8825360 protein-coding Kmt5b lysine methyltransferase 5B ENCODES a protein that exhibits chromatin binding (ortholog); histone H4K20 methyltransferase activity (ortholog); histone methyltransferase activity (ortholog); INVOLVED IN DNA repair (ortholog); positive regulation of double-strand break repair via nonhomologous end joining (ortholog); positive regulation of isotype switching (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 51 (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955422 17626606 17684890 + 102005719 AGCD01022929;AGCD01022930;AGCD01022931;AGCD01022932;GBBH01076410;GBDI01216944;XM_013514163;XM_013514164 XP_013369617;XP_013369618 MODEL 9033992 ncrna LOC102017181 uncharacterized LOC102017181 NW_004955402 45288759 45321351 + 102017181 AGCD01001133;AGCD01001134;AGCD01001135;GBDF01081512;XR_001237047;XR_259087;XR_259088 MODEL 10290905 ncrna LOC106146955 uncharacterized LOC106146955 NW_004955507 3559630 3562063 - 106146955 AGCD01065631;GBDF01238579;XR_001231619 MODEL 8887507 protein-coding LOC102024107 taste receptor type 2 member 140-like NW_004955413 8099439 8100275 - 102024107 AGCD01013846;XM_005379629 XP_005379686 MODEL 8762424 protein-coding LOC102024715 asparagine synthetase [glutamine-hydrolyzing] NW_004955432 14130126 14141315 + 102024715 AGCD01031038;GBDF01001575;GBDF01001576;XM_013516080 XP_013371534 MODEL 9055811 protein-coding Znf496 zinc finger protein 496 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleus (ortholog) NW_004955581 543526 559514 - 102017722 AGCD01075677;AGCD01075678;GBDJ01135290;XM_005414248;XM_013509736 XP_005414305;XP_013365190 MODEL 8884037 protein-coding Ermard ER membrane associated RNA degradation ASSOCIATED WITH periventricular nodular heterotopia (ortholog); Periventricular Nodular Heterotopia 6 (ortholog) NW_004955411 3838125 3866282 - 102018814 AGCD01011556;GBDK01058947;XM_005377629;XM_005377630;XM_005377631;XM_005377632;XM_005377633;XM_005377634;XM_013510740;XM_013510742 XP_005377686;XP_005377687;XP_005377688;XP_005377689;XP_005377690;XP_005377691;XP_013366194;XP_013366196 MODEL 39132813 snrna U6 U6 spliceosomal RNA 9040056 protein-coding LOC102024108 olfactory receptor 51F1-like NW_004955414 20369929 20370864 - 102024108 AGCD01015371;XM_005380471 XP_005380528 MODEL 8774690 protein-coding Mknk2 MAPK interacting serine/threonine kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to arsenic-containing substance (ortholog); extrinsic apoptotic signaling pathway in absence of ligand (ortholog); hemopoiesis (ortholog); PARTICIPATES IN p38 MAPK signaling pathway; the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH cyclic hematopoiesis (ortholog); Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog) NW_004955495 6048346 6061579 + 102021684 AGCD01062048;GBDJ01009214;XM_005405932;XM_005405934 XP_005405989;XP_005405991 MODEL 8727832 ncrna LOC102022100 uncharacterized LOC102022100 NW_004955424 1611798 1616189 + 102022100 AGCD01024240;GBBH01004877;XR_001234200;XR_261023 MODEL 8970209 pseudo LOC102010080 protein MEMO1-like NW_004955429 4415409 4416220 + 102010080 AGCD01028489 MODEL 8865381 protein-coding LOC102028816 zinc finger protein 420-like NW_004955948 376 11495 - 102028816 AGCD01078726;AGCD01078727;GBDF01011141;XM_005415152 XP_005415209 MODEL 8930364 protein-coding Spmap2 sperm microtubule associated protein 2 INVOLVED IN spermatogenesis (ortholog) NW_004955495 7261378 7269390 + 102025595 AGCD01062128;AGCD01062129;GBDF01007138;XM_005406042;XM_005406043;XM_005406044;XM_005406045 XP_005406099;XP_005406100;XP_005406101;XP_005406102 MODEL 9016817 protein-coding Neurog3 neurogenin 3 ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN epithelial cell differentiation (ortholog); forebrain development (ortholog); hindbrain development (ortholog); ASSOCIATED WITH congenital malabsorptive diarrhea 4 (ortholog); Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog) NW_004955437 21577896 21578546 + 102020608 AGCD01034911;XM_005390082 XP_005390139 MODEL 8871366 ncrna LOC102013588 uncharacterized LOC102013588 NW_004955460 8620087 8620963 - 102013588 AGCD01048528;GBBH01206621;XR_001236520 MODEL 8935616 protein-coding LOC102005976 sialic acid-binding Ig-like lectin 10 NW_004955558 999418 1002833 + 102005976 AGCD01073409;AGCD01073410;GBDI01356195;GBDJ01063531;XM_013508839 XP_013364293 MODEL 39132689 snrna U6 U6 spliceosomal RNA 9027013 ncrna LOC102022102 uncharacterized LOC102022102 NW_004955424 22345842 22349200 - 102022102 AGCD01024963;GBDF01279008;XR_261101 MODEL 9064259 protein-coding Vps4a vacuolar protein sorting 4 homolog A ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell division (ortholog); endosomal transport (ortholog); endosomal vesicle fusion (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); CIMDAG SYNDROME (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955484 7368938 7375964 - 102005476 AGCD01058329;GBDF01053420;GBDI01064624;XM_013503932 XP_013359386 MODEL 9064278 pseudo LOC102006264 nucleophosmin pseudogene NW_004955511 3225794 3227751 + 102006264 AGCD01066450 MODEL 39132690 snrna U6 U6 spliceosomal RNA 9057192 protein-coding LOC102017183 C-C motif chemokine 3-like NW_004955451 86252 88039 - 102017183 AGCD01042917;GBDK01356227;XM_013519438 XP_013374892 MODEL 8742383 protein-coding Lrp1 LDL receptor related protein 1 ENCODES a protein that exhibits alpha-2 macroglobulin receptor activity (ortholog); apolipoprotein binding (ortholog); calcium ion binding (ortholog); INVOLVED IN amyloid-beta clearance (ortholog); amyloid-beta clearance by cellular catabolic process (ortholog); amyloid-beta clearance by transcytosis (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); alcohol use disorder (ortholog); alcoholic hepatitis (ortholog); FOUND IN apical part of cell (ortholog); axonal growth cone (ortholog); basolateral plasma membrane (ortholog) NW_004955458 4861431 4941939 + 102021525 AGCD01047443;AGCD01047444;AGCD01047445;GBCE01001876;XM_005397348 XP_005397405 MODEL 8832485 protein-coding LOC102018388 zinc finger protein 791-like NW_004955415 33148948 33168071 - 102018388 AGCD01016753;AGCD01016754;GBDF01124083;XM_005381109;XM_005381111;XM_013512175;XM_013512176 XP_005381166;XP_005381168;XP_013367629;XP_013367630 MODEL 8961638 protein-coding Shisa5 shisa family member 5 ENCODES a protein that exhibits WW domain binding (ortholog); INVOLVED IN intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); FOUND IN endoplasmic reticulum (ortholog); nuclear envelope (ortholog) NW_004955532 535992 544542 - 102027566 AGCD01070130;GBBH01033742;GBCB01120615;XM_013507610;XM_013507611 XP_013363064;XP_013363065 MODEL 8708668 pseudo LOC102019617 serine-rich coiled-coil domain-containing protein 2 pseudogene NW_004955424 3832086 3840893 + 102019617 AGCD01024331 MODEL 8703376 ncrna LOC102026108 uncharacterized LOC102026108 NW_004955416 24569709 24571723 + 102026108 AGCD01017570;GBDF01210261;XR_001233280;XR_001233281 MODEL 39132691 snrna U6 U6 spliceosomal RNA 8984209 protein-coding Znf503 zinc finger protein 503 INVOLVED IN G1 to G0 transition involved in cell differentiation (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH Genitopatellar Syndrome (ortholog) NW_004955437 16724696 16728759 + 102026255 AGCD01034706;AGCD01034707;GBDI01294030;GBDK01059831;XM_005389916 XP_005389973 MODEL 8713719 protein-coding LOC102027143 uncharacterized LOC102027143 NW_004955455 4911109 4927967 - 102027143 AGCD01045705;AGCD01045706;AGCD01045707;GBDF01157410;XM_013520308 XP_013375762 MODEL 8887566 protein-coding Dhx15 DEAH-box helicase 15 ENCODES a protein that exhibits double-stranded RNA binding (ortholog); RNA binding (ortholog); RNA helicase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); defense response to bacterium (ortholog); defense response to virus (ortholog); PARTICIPATES IN ribosome biogenesis pathway; spliceosome pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); basal cell carcinoma (ortholog); epilepsy (ortholog); FOUND IN nuclear speck (ortholog); U12-type spliceosomal complex (ortholog); U2-type post-mRNA release spliceosomal complex (ortholog) NW_004955480 451126 502226 + 102026110 AGCD01056582;GBCQ01039272;XM_005402461 XP_005402518 MODEL 39132693 snrna U6 U6 spliceosomal RNA 8875817 pseudo LOC102019621 BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 pseudogene NW_004955504 420550 422042 - 102019621 AGCD01064819 MODEL 8877546 ncrna LOC102026115 uncharacterized LOC102026115 NW_004955419 4388701 4395368 - 102026115 AGCD01019757;GBDF01162328;XR_001233599 MODEL 8827000 protein-coding Slc17a1 solute carrier family 17 member 1 INVOLVED IN sodium-dependent phosphate transport (ortholog); urate metabolic process (ortholog); urate transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955483 1269153 1296329 + 102029082 AGCD01057645;GBDF01022721;XM_005403339;XM_005403340;XM_005403341;XM_013503757 XP_005403396;XP_005403397;XP_005403398;XP_013359211 MODEL 8900455 protein-coding Usp39 ubiquitin specific peptidase 39 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal complex assembly (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); Experimental Neoplasms (ortholog); hereditary spastic paraplegia 31 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); U4/U6 x U5 tri-snRNP complex (ortholog) NW_004955424 1867910 1893338 - 102026444 AGCD01024249;GBDI01219635;XM_005385418 XP_005385475 MODEL 8996615 protein-coding Lars1 leucyl-tRNA synthetase 1 ENCODES a protein that exhibits aminoacyl-tRNA editing activity (ortholog); glutamine-tRNA ligase activity (ortholog); GTPase activator activity (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to amino acid stimulus (ortholog); cellular response to L-leucine (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); infantile liver failure syndrome 1 (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955415 7923292 7983757 + 102018179 AGCD01016059;AGCD01016060;GBDF01054280;XM_005380680 XP_005380737 MODEL 8788119 protein-coding Nexmif neurite extension and migration factor INVOLVED IN negative regulation of cell adhesion mediated by integrin (ortholog); negative regulation of cell-cell adhesion mediated by cadherin (ortholog); negative regulation of cell-matrix adhesion (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN cytosol (ortholog); midbody (ortholog); nucleoplasm (ortholog) NW_004955562 780172 786049 - 102025052 AGCD01073946;XM_013509113 XP_013364567 MODEL 39132695 snrna U6 U6 spliceosomal RNA 8845134 protein-coding LOC102019623 olfactory receptor 8K5-like NW_004955511 1421949 1422887 + 102019623 AGCD01066366;XM_013506424 XP_013361878 MODEL 8703813 protein-coding Bmpr1b bone morphogenetic protein receptor type 1B ENCODES a protein that exhibits ATP binding (ortholog); BMP binding (ortholog); BMP receptor activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); bone development (ortholog); camera-type eye development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH acromesomelic dysplasia 3 (ortholog); acromesomelic dysplasia, Hunter-Thompson type (ortholog); asthma (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog); plasma membrane (ortholog) NW_004955405 5408171 5784930 + 102013791 AGCD01004682;AGCD01004683;AGCD01004684;AGCD01004685;AGCD01004686;AGCD01004687;GBDI01326385;XM_013517414;XM_013517415;XM_013517416;XM_013517418;XM_013517428;XM_013517431;XM_013517434;XM_013517436;XM_013517437 XP_013372868;XP_013372869;XP_013372870;XP_013372872;XP_013372882;XP_013372885;XP_013372888;XP_013372890;XP_013372891 MODEL 9036934 pseudo LOC102012410 cullin-4B pseudogene NW_004955462 1327574 1331025 - 102012410 AGCD01049112 MODEL 8961579 protein-coding Vps4b vacuolar protein sorting 4 homolog B ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN angiogenesis (ortholog); canonical Wnt signaling pathway (ortholog); central nervous system development (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); multiple congenital anomalies-hypotonia-seizures syndrome 1 (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955402 47154350 47183979 - 102023414 AGCD01001174;AGCD01001175;GBDI01062359;XM_005373028 XP_005373085 MODEL 39132696 snrna U6 U6 spliceosomal RNA 39132815 snrna U6 U6 spliceosomal RNA 8814483 protein-coding LOC102017184 chromosome unknown open reading frame, human C10orf120 ASSOCIATED WITH 2-Methylbutyryl-CoA Dehydrogenase Deficiency (ortholog); craniosynostosis (ortholog) NW_004955841 7610 9412 + 102017184 AGCD01078471;GBDF01079972;XM_005415128 XP_005415185 MODEL 8866356 protein-coding Tnfsf9 TNF superfamily member 9 ENCODES a protein that exhibits signaling receptor binding (ortholog); tumor necrosis factor receptor superfamily binding (ortholog); INVOLVED IN myeloid dendritic cell differentiation (ortholog); positive regulation of activated T cell proliferation (ortholog); positive regulation of cytotoxic T cell differentiation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); B-cell lymphoma (ortholog); colorectal cancer (ortholog); FOUND IN plasma membrane (ortholog) NW_004955495 3101965 3107552 - 102009959 AGCD01061823;AGCD01061824;GBBH01023646;GBDF01260918;XM_013505037 XP_013360491 MODEL 8774020 protein-coding Tfeb transcription factor EB ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN antibacterial innate immune response (ortholog); cellular response to amino acid starvation (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH infantile Refsum disease (ortholog); Nerve Degeneration (ortholog); Zellweger syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lysosomal membrane (ortholog) NW_004955437 8102241 8141001 - 102013864 AGCD01034478;AGCD01034479;GBDF01156776;XM_005389689;XM_005389690 XP_005389746;XP_005389747 MODEL 9023209 ncrna LOC102028818 uncharacterized LOC102028818 NW_004955404 15796916 15846686 + 102028818 AGCD01003549;AGCD01003550;GBDF01250623;XR_259313 MODEL 8996972 protein-coding Lrp10 LDL receptor related protein 10 ENCODES a protein that exhibits low-density lipoprotein particle receptor activity (ortholog); INVOLVED IN inner ear development (ortholog); lipid metabolic process (ortholog); lipid transport (ortholog); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); FOUND IN membrane (ortholog) NW_004955409 37413471 37419485 - 102003098 AGCD01010512;AGCD01010513;GBDF01005600;GBDJ01017379;XM_005377114 XP_005377171 MODEL 39132697 snrna U6 U6 spliceosomal RNA 9012978 pseudo LOC102027149 LYR motif-containing protein 2 pseudogene NW_004955457 8137763 8138031 + 102027149 AGCD01046903 MODEL 10374611 protein-coding LOC106149216 translation initiation factor IF-2-like NW_004955440 14529825 14531345 + 106149216 AGCD01036471;GBBH01163978;GBCE01168201;XM_013517441 XP_013372895 MODEL 8732859 protein-coding Sat2 spermidine/spermine N1-acetyltransferase family member 2 ENCODES a protein that exhibits diamine N-acetyltransferase activity (ortholog); identical protein binding (ortholog); N-acetyltransferase activity (ortholog); INVOLVED IN nor-spermidine metabolic process (ortholog); polyamine biosynthetic process (ortholog); putrescine acetylation (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog) NW_004955467 9306210 9308668 + 102007640 AGCD01051494;GBDK01232568;XM_005399471;XM_013522147 XP_005399528;XP_013377601 MODEL 8823160 protein-coding Dhx16 DEAH-box helicase 16 ENCODES a protein that exhibits molecular adaptor activity (ortholog); pattern recognition receptor activity (ortholog); ubiquitin binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955583 657425 668390 - 102004765 AGCD01075846;AGCD01075847;GBBH01061492;GBCB01038131;XM_013509799 XP_013365253 MODEL 8993850 pseudo LOC102026116 60S ribosomal protein L39 pseudogene NW_004955419 27983511 27984071 + 102026116 AGCD01020452 MODEL 39132698 snrna U6 U6 spliceosomal RNA 9047029 protein-coding Ppp4r1 protein phosphatase 4 regulatory subunit 1 ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); dystonia (ortholog); intellectual disability (ortholog) NW_004955402 2529335 2568621 + 102023309 AGCD01000083;AGCD01000084;GBCE01096633;GBDK01143623;XM_013515377 XP_013370831 MODEL 8784985 protein-coding Usp4 ubiquitin specific peptidase 4 ENCODES a protein that exhibits adenosine receptor binding (ortholog); cysteine-type deubiquitinase activity (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of protein ubiquitination (ortholog); positive regulation of TORC1 signaling (ortholog); protein deubiquitination (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); carnitine-acylcarnitine translocase deficiency (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955532 1247110 1284564 - 102007934 AGCD01070175;GBBH01063072;GBDI01079457;XM_013507642 XP_013363096 MODEL 8966236 ncrna LOC102019625 uncharacterized LOC102019625 NW_004955431 15052267 15054709 + 102019625 AGCD01030345;GBDF01291829;XR_001234581;XR_261475 MODEL 8943506 protein-coding LOC102025141 taste receptor type 2 member 1-like NW_004955504 6888806 6889702 - 102025141 AGCD01064930;XM_005407092 XP_005407149 MODEL 8716753 ncrna LOC102012411 uncharacterized LOC102012411 NW_004955411 2942448 2946613 + 102012411 AGCD01011526;GBCQ01140642;XR_259913 MODEL 8896477 protein-coding Nexn nexilin F-actin binding protein ENCODES a protein that exhibits actin filament binding (ortholog); structural constituent of muscle (ortholog); INVOLVED IN regulation of cell migration (ortholog); regulation of cytoskeleton organization (ortholog); response to bacterium (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); dilated cardiomyopathy (ortholog); dilated cardiomyopathy 1A (ortholog); FOUND IN actin cytoskeleton (ortholog); cell-substrate junction (ortholog); focal adhesion (ortholog) NW_004955423 15278526 15299654 - 102012216 AGCD01023801;AGCD01023802;GBCB01005603;GBDJ01313165;XM_005385190;XM_013514423 XP_005385247;XP_013369877 MODEL 39132518 snrna U6 U6 spliceosomal RNA 9026531 pseudo LOC102015393 olfactory receptor 1468-like NW_004955467 13352514 13353443 - 102015393 AGCD01051671 MODEL 8875416 protein-coding Mkrn1 makorin ring finger protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); protein polyubiquitination (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); RASopathy (ortholog) NW_004955494 2847783 2871095 + 102008327 AGCD01061452;GBDF01011001;XM_013504989;XM_013504990 XP_013360443;XP_013360444 MODEL 8823825 pseudo LOC102004258 protein tyrosine phosphatase type IVA 1 pseudogene NW_004955464 8933302 8933760 - 102004258 AGCD01050099 MODEL 39132816 snrna U6 U6 spliceosomal RNA 8782188 protein-coding LOC102013593 interferon lambda-2 NW_004955468 254857 256530 - 102013593 AGCD01051686;XM_013522285 XP_013377739 MODEL 8959533 protein-coding LOC102023060 olfactory receptor 4A47-like NW_004955511 92806 93715 - 102023060 AGCD01066319;XM_013506408 XP_013361862 MODEL 10328898 ncrna LOC106146956 uncharacterized LOC106146956 NW_004955507 1656776 1667721 + 106146956 AGCD01065569;XR_001231622;XR_001231623 MODEL 8857035 protein-coding LOC102017185 arylamine N-acetyltransferase 2 NW_004955403 42278692 42286695 + 102017185 AGCD01002751;GBDF01111352;XM_005373601;XM_005373602;XM_013513576 XP_005373658;XP_005373659;XP_013369030 MODEL 8760164 protein-coding Kmt5c lysine methyltransferase 5C ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); histone H4K20 methyltransferase activity (ortholog); INVOLVED IN DNA repair (ortholog); positive regulation of double-strand break repair via nonhomologous end joining (ortholog); positive regulation of isotype switching (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); liver benign neoplasm (ortholog); FOUND IN condensed chromosome, centromeric region (ortholog); heterochromatin (ortholog); nucleoplasm (ortholog) NW_004955567 895334 901240 - 102025055 AGCD01074445;AGCD01074446;GBDF01050988;XM_005413333;XM_013509262;XM_013509263;XM_013509264;XM_013509265;XM_013509266;XM_013509267 XP_005413390;XP_013364716;XP_013364717;XP_013364718;XP_013364719;XP_013364720;XP_013364721 MODEL 8734054 ncrna LOC102003168 uncharacterized LOC102003168 NW_004955513 4074732 4078682 + 102003168 AGCD01066914;GBDF01146373;XR_264473 MODEL 8741484 ncrna LOC102008892 uncharacterized LOC102008892 NW_004955439 2679785 2686659 - 102008892 AGCD01035657;GBDF01185074;XR_261968 MODEL 8720094 pseudo LOC102017188 60S acidic ribosomal protein P0-like NW_004955404 6462391 6489586 - 102017188 AGCD01003320;AGCD01003321;AGCD01003322 MODEL 8799190 protein-coding LOC102013596 olfactory receptor 10A3 NW_004955414 23775674 23776654 - 102013596 AGCD01015522;XM_005380207 XP_005380264 MODEL 9019224 pseudo LOC102003174 transcription factor E2F6 pseudogene NW_004955437 13053465 13055563 + 102003174 AGCD01034639 MODEL 8912743 ncrna LOC102007747 uncharacterized LOC102007747 NW_004955462 12097970 12113964 + 102007747 AGCD01049397;GBDF01234407;XR_263131 MODEL 9043964 protein-coding Dhx29 DExH-box helicase 29 ENCODES a protein that exhibits ribonucleoside triphosphate phosphatase activity (ortholog); ribosomal small subunit binding (ortholog); translation activator activity (ortholog); INVOLVED IN formation of translation preinitiation complex (ortholog); ribosome assembly (ortholog); PARTICIPATES IN translation initiation pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); prostate cancer (ortholog); FOUND IN cytosolic small ribosomal subunit (ortholog); eukaryotic 43S preinitiation complex (ortholog) NW_004955446 12362324 12412814 + 102017176 AGCD01040230;GBDF01189845;XM_005392696;XM_005392697 XP_005392753;XP_005392754 MODEL 8855649 protein-coding LOC102018049 vomeronasal type-2 receptor 116-like NW_004955622 20044 44768 - 102018049 AGCD01077381;XM_005415016 XP_005415073 MODEL 8760819 protein-coding Tas1r3 taste 1 receptor member 3 ENCODES a protein that exhibits sweet taste receptor activity (ortholog); taste receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of sweet taste (ortholog); sensory perception of sweet taste (ortholog); sensory perception of umami taste (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN Golgi apparatus (ortholog); plasma membrane (ortholog); sweet taste receptor complex (ortholog) NW_004955486 9469954 9475421 - 102024012 AGCD01059187;GBCQ01086767;XM_005404231;XM_013504184;XM_013504185;XM_013504186;XM_013504188 XP_005404288;XP_013359638;XP_013359639;XP_013359640;XP_013359642 MODEL 8938677 protein-coding Znf507 zinc finger protein 507 NW_004955468 5555576 5589850 - 102004266 AGCD01051972;GBCB01120576;XM_005400091;XM_005400094 XP_005400148;XP_005400151 MODEL 39132520 snrna U6 U6 spliceosomal RNA 8757030 protein-coding LOC102022110 olfactory receptor 8K5-like NW_004955511 5121480 5122424 + 102022110 AGCD01066549;XM_005408086 XP_005408143 MODEL 9022740 protein-coding Nrn1 neuritin 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN nervous system development (ortholog); neuron projection extension (ortholog); presynaptic modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 14 (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); extracellular space (ortholog); glutamatergic synapse (ortholog) NW_004955465 7703301 7711927 + 102007205 AGCD01050465;GBBH01067675;XM_005398874 XP_005398931 MODEL 9052817 protein-coding LOC102012414 cytochrome P450 4B1 ENCODES a protein that exhibits heterocyclic compound binding (ortholog); INVOLVED IN biphenyl metabolic process (ortholog); PARTICIPATES IN phase I biotransformation pathway via cytochrome P450; ASSOCIATED WITH autism spectrum disorder (ortholog); chronic obstructive pulmonary disease (ortholog); urinary bladder cancer (ortholog) NW_004955464 11539467 11556519 - 102012414 AGCD01050155;GBDF01188215;XM_005398649;XM_005398650 XP_005398706;XP_005398707 MODEL 8928191 pseudo LOC102024719 periphilin-1 pseudogene NW_004955529 38139 39596 + 102024719 AGCD01069622;XM_005410091 MODEL 9000101 protein-coding Tfec transcription factor EC ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to heat (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955432 21751697 21813199 - 102009642 AGCD01031233;AGCD01031234;GBCQ01150400;XM_005388113;XM_005388115;XM_013516081;XM_013516082 XP_005388170;XP_005388172;XP_013371535;XP_013371536 MODEL 8902247 protein-coding Lrp11 LDL receptor related protein 11 ENCODES a protein that exhibits phosphoprotein binding (ortholog); INVOLVED IN multicellular organismal response to stress (ortholog); response to cold (ortholog); response to heat (ortholog) NW_004955439 11426283 11475260 + 102006958 AGCD01035908;AGCD01035909;AGCD01035910;GBCE01007076;GBCQ01097167;XM_013517316 XP_013372770 MODEL 39132521 snrna U6 U6 spliceosomal RNA 8872991 protein-coding Ermn ermin ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN actin filament organization (ortholog); morphogenesis of a branching structure (ortholog); regulation of cell projection organization (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN cell cortex (ortholog); cytoplasm (ortholog); filopodium (ortholog) NW_004955449 16056735 16064734 + 102017079 AGCD01042208;GBDK01341423;XM_005393411 XP_005393468 MODEL 8729758 pseudo LOC102018393 U3 small nucleolar RNA-associated protein 15 homolog NW_004955416 25347769 25351583 - 102018393 AGCD01017587 MODEL 8827324 protein-coding Tff1 trefoil factor 1 INVOLVED IN cell differentiation (ortholog); cell population proliferation (ortholog); maintenance of gastrointestinal epithelium (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH Achlorhydria (ortholog); Acute Lung Injury (ortholog); Breast Neoplasms (ortholog); FOUND IN extracellular space (ortholog) NW_004955407 39363693 39365724 + 102014322 AGCD01007824;XM_005375829;XM_013506349 XP_005375886;XP_013361803 MODEL 8792153 protein-coding Gprasp3 G protein-coupled receptor associated sorting protein family member 3 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN learning or memory (ortholog); negative regulation of neuron apoptotic process (ortholog); positive regulation of dendritic spine morphogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog) NW_004955548 230525 236043 + 102021803 AGCD01072324;AGCD01072325;GBDI01177598;XM_013508530 XP_013363984 MODEL 39132522 snrna U6 U6 spliceosomal RNA 8751975 ncrna LOC102025146 uncharacterized LOC102025146 NW_004955429 15336841 15349273 - 102025146 AGCD01028803;AGCD01028804;GBDF01017223;XR_261338 MODEL 8926406 protein-coding LOC102020501 olfactory receptor 12-like NW_004955581 974973 975902 + 102020501 AGCD01075705;XM_005414256 XP_005414313 MODEL 8912663 protein-coding Spmap2l sperm microtubule associated protein 2 like ASSOCIATED WITH congenital disorder of glycosylation type IIk (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955447 14454884 14496320 - 102006511 AGCD01041006;GBDF01000151;XM_013518495;XM_013518496 XP_013373949;XP_013373950 MODEL 39131850 snrna U1 U1 spliceosomal RNA 9044251 protein-coding LOC102005977 interleukin-6-like NW_004955443 14546872 14547379 + 102005977 AGCD01038517;XM_005392049 XP_005392106 MODEL 8949434 protein-coding LOC102017190 intestinal-type alkaline phosphatase NW_004955453 3503226 3506869 - 102017190 AGCD01044662;GBCQ01177257;XM_005395380 XP_005395437 MODEL 8702855 pseudo LOC102004259 phosphoacetylglucosamine mutase pseudogene NW_004955465 13182009 13183562 + 102004259 AGCD01050592 MODEL 8731686 protein-coding Tnik TRAF2 and NCK interacting kinase ENCODES a protein that exhibits protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cytoskeleton organization (ortholog); intracellular signal transduction (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); autosomal recessive intellectual developmental disorder 54 (ortholog); colorectal cancer (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog) NW_004955420 1166340 1542712 - 102022926 AGCD01020569;AGCD01020570;AGCD01020571;AGCD01020572;AGCD01020573;AGCD01020574;GBDI01026985;XM_005382987;XM_005382988;XM_005382989;XM_005382990 XP_005383044;XP_005383045;XP_005383046;XP_005383047 MODEL 9039668 protein-coding Dhx30 DExH-box helicase 30 ENCODES a protein that exhibits chromatin binding (ortholog); double-stranded RNA binding (ortholog); RNA binding (ortholog); INVOLVED IN central nervous system development (ortholog); mitochondrial large ribosomal subunit assembly (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial matrix (ortholog) NW_004955420 24537608 24549771 - 102012330 AGCD01021315;GBCE01115003;GBCQ01129787;XM_013513378 XP_013368832 MODEL 8995484 protein-coding Znf511 zinc finger protein 511 ASSOCIATED WITH distal 10q deletion syndrome (ortholog) NW_004955477 10932833 10941562 + 102030418 AGCD01055709;AGCD01055710;GBDF01153390;XM_013503049;XM_013503050;XR_001230824 XP_013358503;XP_013358504 MODEL 39131856 snrna U1 U1 spliceosomal RNA 8719517 protein-coding LOC102023061 uncharacterized LOC102023061 NW_004955513 3164898 3174163 + 102023061 AGCD01066896;GBDF01158696;XM_005408461 XP_005408518 MODEL 8881076 protein-coding LOC102003401 protein MTO1 homolog, mitochondrial-like NW_004955981 5824 8486 + 102003401 AGCD01078801;AGCD01078802;XM_013510212 XP_013365666 MODEL 8783943 protein-coding LOC102024110 nucleolin-like NW_004955475 4819884 4825301 + 102024110 AGCD01054894;XM_005401704 XP_005401761 MODEL 8879932 pseudo LOC102022112 26S protease regulatory subunit 10B pseudogene NW_004955432 541788 542950 - 102022112 AGCD01030568 MODEL 8967580 protein-coding Kncn kinocilin FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); ciliary basal body (ortholog) NW_004955464 11756803 11759934 + 102018481 AGCD01050161;XM_005398673 XP_005398730 MODEL 8856282 protein-coding Tnip1 TNFAIP3 interacting protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); mitogen-activated protein kinase binding (ortholog); polyubiquitin modification-dependent protein binding (ortholog); INVOLVED IN glycoprotein biosynthetic process (ortholog); leukocyte cell-cell adhesion (ortholog); MyD88-dependent toll-like receptor signaling pathway (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); asthma (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955408 2575324 2621845 + 102018060 AGCD01008014;AGCD01008015;GBCE01023304;XM_005376061;XM_013508185;XM_013508186;XM_013508187;XM_013508191;XM_013508195 XP_005376118;XP_013363639;XP_013363640;XP_013363641;XP_013363645;XP_013363649 MODEL 8723662 protein-coding LOC102023062 lipocalin-15 NW_004955513 4882042 4887684 - 102023062 AGCD01066943;GBBH01057723;XM_005408552;XM_005408553;XM_013506566 XP_005408609;XP_005408610;XP_013362020 MODEL 8707099 protein-coding Znf512 zinc finger protein 512 ASSOCIATED WITH Tatton-Brown-Rahman syndrome (ortholog) NW_004955469 9525501 9571050 + 102004374 AGCD01052505;AGCD01052506;AGCD01052507;AGCD01052508;AGCD01052509;AGCD01052510;GBBH01164970;GBDF01085710;XM_013522661;XM_013522662 XP_013378115;XP_013378116 MODEL 10092336 protein-coding Lrp12 LDL receptor related protein 12 ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN cell adhesion (ortholog); cell migration (ortholog); integrin activation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 28 (ortholog); Cohen syndrome (ortholog); genetic disease (ortholog); FOUND IN plasma membrane (ortholog) NW_004955417 28248620 28299845 - 106148202 AGCD01018576;AGCD01018577;AGCD01018578;GBBH01207935;GBDK01395295;XM_013512743 XP_013368197 MODEL 8917084 ncrna LOC102024112 uncharacterized LOC102024112 NW_004955417 16930439 16936030 - 102024112 AGCD01018277;GBDF01075894;XR_260483 MODEL 9044466 pseudo LOC102013597 prefoldin subunit 4 pseudogene NW_004955471 2445173 2445577 - 102013597 AGCD01053009 MODEL 8896336 pseudo LOC102006265 serine/arginine-rich splicing factor 12 pseudogene NW_004955430 10505467 10561459 + 102006265 AGCD01029436;AGCD01029437;AGCD01029438 MODEL 39132818 snrna U6 U6 spliceosomal RNA 8783419 protein-coding Tnip2 TNFAIP3 interacting protein 2 ENCODES a protein that exhibits polyubiquitin modification-dependent protein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN CD40 signaling pathway (ortholog); cellular response to lipopolysaccharide (ortholog); interleukin-1-mediated signaling pathway (ortholog); ASSOCIATED WITH cherubism (ortholog); Ellis-Van Creveld syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955514 1682641 1687881 - 102005741 AGCD01067059;GBCE01032325;GBCQ01006867;XM_013506803 XP_013362257 MODEL 8896635 protein-coding LOC102018050 arylamine N-acetyltransferase 2-like NW_004955403 42312025 42335918 + 102018050 AGCD01002751;GBDK01432435;XM_005373604;XM_005373605;XM_005373606;XM_005373607;XM_013513595 XP_005373661;XP_005373662;XP_005373663;XP_005373664;XP_013369049 MODEL 9008640 ncrna LOC102005978 uncharacterized LOC102005978 NW_004955445 8848190 8852122 - 102005978 AGCD01039616;GBBH01088001;XR_001235594 MODEL 8892776 ncrna LOC102007395 uncharacterized LOC102007395 NW_004955451 5460378 5468253 + 102007395 AGCD01043168;GBBH01102354;XR_262581 MODEL 9023479 protein-coding Lars2 leucyl-tRNA synthetase 2, mitochondrial ENCODES a protein that exhibits leucine-tRNA ligase activity (ortholog); INVOLVED IN leucyl-tRNA aminoacylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); HYDROPS, LACTIC ACIDOSIS, AND SIDEROBLASTIC ANEMIA (ortholog); mitochondrial myopathy (ortholog); FOUND IN mitochondrion (ortholog) NW_004955420 26342129 26446959 - 102008863 AGCD01021401;AGCD01021402;AGCD01021403;AGCD01021404;GBBH01102481;XM_013513567 XP_013369021 MODEL 8827916 protein-coding Yars2 tyrosyl-tRNA synthetase 2 ENCODES a protein that exhibits L-tyrosine binding (ortholog); protein homodimerization activity (ortholog); tRNA binding (ortholog); INVOLVED IN mitochondrial tyrosyl-tRNA aminoacylation (ortholog); tRNA aminoacylation (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular dysplasia 9 (ortholog); encephalopathy due to defective mitochondrial and peroxisomal fission 1 (ortholog); genetic disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); nuclear body (ortholog) NW_004955505 3004084 3011003 + 102006369 AGCD01065010;GBCB01061117;GBDF01222575;XM_005407111 XP_005407168 MODEL 8700292 protein-coding Bmpr2 bone morphogenetic protein receptor type 2 ENCODES a protein that exhibits activin receptor activity, type II (ortholog); BMP binding (ortholog); BMP receptor activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); aortic valve development (ortholog); artery development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH asthma (ortholog); autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); FOUND IN adherens junction (ortholog); apical plasma membrane (ortholog); axon (ortholog) NW_004955457 12235780 12315680 - 102004042 AGCD01047005;AGCD01047006;GBCB01060551;GBDF01280157;XM_013520738 XP_013376192 MODEL 39132819 snrna U6 U6 spliceosomal RNA 39131863 snrna U1 U1 spliceosomal RNA 8842395 protein-coding LOC102009284 uncharacterized LOC102009284 NW_004955420 26735389 26736424 + 102009284 AGCD01021427;GBDF01043434;XM_005383475 XP_005383532 MODEL 8780245 protein-coding Tnip3 TNFAIP3 interacting protein 3 ENCODES a protein that exhibits polyubiquitin modification-dependent protein binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); MyD88-independent toll-like receptor signaling pathway (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH neurodevelopmental disorder with hearing loss, seizures, and brain abnormalities (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955428 19479633 19511738 + 102020468 AGCD01028092;GBDI01155280;XM_013515238;XM_013515239;XM_013515240;XM_013515241;XM_013515242;XM_013515243 XP_013370692;XP_013370693;XP_013370694;XP_013370695;XP_013370696;XP_013370697 MODEL 8895337 protein-coding Vps50 VPS50 subunit of EARP/GARPII complex ENCODES a protein that exhibits SNARE binding (ortholog); INVOLVED IN endocytic recycling (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, SEIZURES, AND NEONATAL CHOLESTASIS (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN EARP complex (ortholog); membrane (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955432 10134280 10244390 + 102009533 AGCD01030927;AGCD01030928;GBCE01159396;XM_005388036;XM_013516067 XP_005388093;XP_013371521 MODEL 8936924 protein-coding Usp40 ubiquitin specific peptidase 40 ASSOCIATED WITH Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog) NW_004955453 2661233 2739742 + 102009456 AGCD01044635;AGCD01044636;GBDF01086830;XM_013519858;XM_013519859;XM_013519860;XM_013519861;XM_013519862 XP_013375312;XP_013375313;XP_013375314;XP_013375315;XP_013375316 MODEL 8850899 protein-coding Ybey ybeY metalloendoribonuclease ENCODES a protein that exhibits RNA endonuclease activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); cataract 9 multiple types (ortholog); FOUND IN mitochondrion (ortholog); nucleus (ortholog) NW_004955407 42706407 42710962 + 102017954 AGCD01007895;GBCE01160007;XM_005375930;XR_001231523;XR_259644;XR_259645 XP_005375987 MODEL 8859132 protein-coding Las1l LAS1 like ribosome biogenesis factor INVOLVED IN rRNA processing (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN MLL1 complex (ortholog); nucleolus (ortholog) NW_004955475 5143641 5189075 - 102007655 AGCD01054905;AGCD01054906;AGCD01054907;GBCC01045813;XM_005401565;XM_005401569;XM_005401570;XM_013502834;XM_013502835;XM_013502836;XM_013502837;XM_013502838;XM_013502839;XM_013502840;XM_013502841;XM_013502842;XM_013502843;XM_013502844 XP_005401622;XP_005401626;XP_005401627;XP_013358288;XP_013358289;XP_013358290;XP_013358291;XP_013358292;XP_013358293;XP_013358294;XP_013358295;XP_013358296;XP_013358297;XP_013358298 MODEL 8745285 pseudo LOC102028824 transcription initiation factor IIA subunit 2 pseudogene NW_004955455 10171584 10171910 - 102028824 AGCD01045947 MODEL 39132524 snrna U6 U6 spliceosomal RNA 8901604 protein-coding Slc17a2 solute carrier family 17 member 2 ENCODES a protein that exhibits urate transmembrane transporter activity (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); liver cirrhosis (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955483 1185775 1201851 + 102027187 AGCD01057644;XM_005403332;XM_005403333;XM_005403334 XP_005403389;XP_005403390;XP_005403391 MODEL 8963796 protein-coding LOC102027151 uncharacterized LOC102027151 NW_004955409 3663363 3669556 - 102027151 AGCD01009258;GBCB01111656;XM_005376659;XM_013510291 XP_005376716;XP_013365745 MODEL 8899267 protein-coding Mkrn2 makorin ring finger protein 2 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of inflammatory response to antigenic stimulus (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Noonan syndrome 5 (ortholog); Noonan syndrome with multiple lentigines 2 (ortholog); RASopathy (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955429 18049617 18070526 - 102018957 AGCD01028874;GBDJ01234021;XM_005387105;XM_005387106 XP_005387162;XP_005387163 MODEL 8917095 protein-coding LOC102025147 mannose-binding protein A-like NW_004955510 239781 243643 - 102025147 AGCD01066142;GBDF01235188;XM_005407864;XM_005407865;XM_013506332 XP_005407921;XP_005407922;XP_013361786 MODEL 9032024 protein-coding LOC102023781 olfactory receptor 6C2-like NW_004955458 3010329 3011258 + 102023781 AGCD01047266;GBDF01110776;XM_005397507 XP_005397564 MODEL 8912141 protein-coding Nrn1l neuritin 1 like ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN neuron projection extension (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN axon (ortholog); extracellular space (ortholog); membrane (ortholog) NW_004955484 8818768 8820477 - 102020567 AGCD01058398;GBDJ01337690;XM_005403615 XP_005403672 MODEL 8937311 protein-coding LOC102028825 ral guanine nucleotide dissociation stimulator-like NW_004955407 38544835 38547152 + 102028825 AGCD01007808;GBDI01293385;XM_005375779;XM_013506122 XP_005375836;XP_013361576 MODEL 8818449 pseudo LOC102026117 sal-like protein 4 NW_004955419 10256718 10300564 + 102026117 AGCD01019940;AGCD01019941;AGCD01019942;AGCD01019943 MODEL 8875735 protein-coding Sec23a SEC23 homolog A, COPII coat complex component ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN COPII-coated vesicle cargo loading (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); craniolenticulosutural dysplasia (ortholog); osteoarthritis (ortholog); FOUND IN COPII vesicle coat (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); cytosol (ortholog) NW_004955409 22192549 22243090 + 102016984 AGCD01010029;AGCD01010030;AGCD01010031;AGCD01010032;GBCQ01097019;GBDJ01316545;XM_013510357 XP_013365811 MODEL 10312363 ncrna LOC106149652 uncharacterized LOC106149652 NW_004955405 41503337 41508504 + 106149652 AGCD01005554;GBDJ01031652;XR_001235961 MODEL 8785212 protein-coding Mkrn2os MKRN2 opposite strand NW_004955429 18082860 18090776 + 102020271 AGCD01028876;AGCD01028877;GBCQ01126845;XM_005387110 XP_005387167 MODEL 8994308 ncrna LOC102018395 uncharacterized LOC102018395 NW_004955417 9450900 9469286 + 102018395 AGCD01018052;GBDF01211316;XR_001233466;XR_260468 MODEL 8944647 protein-coding Kndc1 kinase non-catalytic C-lobe domain containing 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN cerebellar granule cell differentiation (ortholog); positive regulation of protein phosphorylation (ortholog); regulation of dendrite development (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); distal 10q deletion syndrome (ortholog); invasive ductal carcinoma (ortholog); FOUND IN dendrite (ortholog); guanyl-nucleotide exchange factor complex (ortholog); neuronal cell body (ortholog) NW_004955477 10792066 10850457 + 102014450 AGCD01055707;AGCD01055708;GBBH01116939;GBDF01014888;XM_005402083 XP_005402140 MODEL 8987814 protein-coding Tas2r16 taste 2 receptor member 16 ENCODES a protein that exhibits bitter taste receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum (ortholog); external side of plasma membrane (ortholog); trans-Golgi network (ortholog) NW_004955479 4591015 4591920 - 102021343 AGCD01056326;XM_005402452 XP_005402509 MODEL 9003418 ncrna LOC102023063 uncharacterized LOC102023063 NW_004955432 1324294 1328134 - 102023063 AGCD01030592;GBDF01278395;XR_261499 MODEL 8876997 protein-coding Spmip1 sperm microtubule inner protein 1 NW_004955479 9667771 9670258 + 102005375 AGCD01056486;GBDK01149250;XM_005402397;XM_013503275 XP_005402454;XP_013358729 MODEL 8973315 protein-coding Nf1 neurofibromin 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); microtubule binding (ortholog); phosphatidylcholine binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); adrenal gland development (ortholog); amygdala development (ortholog); PARTICIPATES IN forkhead class A signaling pathway; syndecan signaling pathway; ASSOCIATED WITH acute monocytic leukemia (ortholog); acute myeloid leukemia (ortholog); adenoma (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955481 6145855 6404179 + 102018496 AGCD01057014;AGCD01057015;AGCD01057016;AGCD01057017;AGCD01057018;AGCD01057019;AGCD01057020;AGCD01057021;AGCD01057022;AGCD01057023;AGCD01057024;AGCD01057025;GBDF01224428;XM_005402798;XM_005402799;XM_005402800;XM_013503423;XM_013503424 XP_005402855;XP_005402856;XP_005402857;XP_013358877;XP_013358878 MODEL 10342550 pseudo LOC106146957 selenoprotein W pseudogene NW_004955507 5582627 5583900 + 106146957 AGCD01065679 MODEL 8784459 protein-coding Lrp1b LDL receptor related protein 1B ENCODES a protein that exhibits low-density lipoprotein particle receptor activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); autosomal dominant intellectual developmental disorder 1 (ortholog); cancer (ortholog); FOUND IN membrane (ortholog); receptor complex (ortholog) NW_004955440 7048527 8475566 - 102017063 AGCD01036325;AGCD01036326;AGCD01036327;AGCD01036328;AGCD01036329;AGCD01036330;AGCD01036331;AGCD01036332;AGCD01036333;AGCD01036334;AGCD01036335;AGCD01036336;AGCD01036337;AGCD01036338;AGCD01036339;AGCD01036340;AGCD01036341;AGCD01036342;AGCD01036343;AGCD01036344;AGCD01036345;AGCD01036346;AGCD01036347;AGCD01036348;AGCD01036349;AGCD01036350;AGCD01036351;AGCD01036352;AGCD01036353;AGCD01036354;AGCD01036355;AGCD01036356;AGCD01036357;GBDF01182714;XM_013517439 XP_013372893 MODEL 8849034 pseudo LOC102012421 5-azacytidine-induced protein 2 pseudogene NW_004955414 22550353 22553184 + 102012421 AGCD01015461 MODEL 39132528 snrna U6 U6 spliceosomal RNA 9035788 protein-coding Znf512b zinc finger protein 512B ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of miRNA transcription (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955528 288494 297850 + 102026038 AGCD01069525;GBBH01163395;GBDF01080659;XM_005409917;XM_013507484 XP_005409974;XP_013362938 MODEL 8782956 protein-coding Ybx1 Y-box binding protein 1 ENCODES a protein that exhibits C5-methylcytidine-containing RNA reader activity (ortholog); chromatin binding (ortholog); GTPase binding (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); CRD-mediated mRNA stabilization (ortholog); epidermis development (ortholog); PARTICIPATES IN cisplatin drug pathway; p53 signaling pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); Colonic Neoplasms (ortholog); FOUND IN CRD-mediated mRNA stability complex (ortholog); cytoplasm (ortholog); cytoplasmic stress granule (ortholog) NW_004955537 2234052 2254528 + 102016420 AGCD01070920;AGCD01070921;GBBH01004351;GBCQ01008012;XM_005410716 XP_005410773 MODEL 8796345 protein-coding LOC102018052 uncharacterized LOC102018052 NW_004955451 16436871 16438274 - 102018052 AGCD01043676;XM_013519142 XP_013374596 MODEL 8749769 protein-coding Ifitm10 interferon induced transmembrane protein 10 ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog) NW_004955422 13556968 13572010 - 102013624 AGCD01022835;GBCE01165385;XM_013514315;XM_013514316 XP_013369769;XP_013369770 MODEL 8717156 protein-coding LOC102007397 uncharacterized LOC102007397 NW_004955403 53982569 53983635 + 102007397 AGCD01003083;GBDK01203485;XM_005373841 XP_005373898 MODEL 9032398 ncrna LOC102012422 uncharacterized LOC102012422 NW_004955474 1783853 1789261 + 102012422 AGCD01054268;GBDK01242651;XR_263587 MODEL 8834197 protein-coding Slc17a3 solute carrier family 17 member 3 ENCODES a protein that exhibits efflux transmembrane transporter activity (ortholog); organic anion transmembrane transporter activity (ortholog); toxin transmembrane transporter activity (ortholog); INVOLVED IN organic anion transport (ortholog); urate metabolic process (ortholog); urate transport (ortholog); ASSOCIATED WITH gout (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955483 1235122 1260161 + 102028541 AGCD01057644;GBCQ01036124;XM_005403337;XM_005403338 XP_005403394;XP_005403395 MODEL 39132530 snrna U6 U6 spliceosomal RNA 8834269 protein-coding LOC102003403 formin-like protein 1 NW_004955451 16903163 16906378 - 102003403 AGCD01043711;GBDF01002809;XM_005394500;XM_005394501;XM_013519234 XP_005394557;XP_005394558;XP_013374688 MODEL 8802108 protein-coding Ermp1 endoplasmic reticulum metallopeptidase 1 INVOLVED IN cellular response to oxidative stress (ortholog); endoplasmic reticulum unfolded protein response (ortholog); ovarian follicle development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); chromosome 9p deletion syndrome (ortholog); chronic kidney disease (ortholog) NW_004955434 9772667 9825048 - 102012355 AGCD01032309;AGCD01032310;GBDF01156541;XM_013516296 XP_013371750 MODEL 8916579 pseudo LOC102007751 olfactory receptor 147-like NW_004955412 25290203 25291080 + 102007751 AGCD01013143 MODEL 8774901 ncrna LOC102003180 uncharacterized LOC102003180 NW_004955547 143678 152995 + 102003180 AGCD01072134;GBBH01161629;XR_264896 MODEL 8887320 protein-coding Gprc5a G protein-coupled receptor class C group 5 member A INVOLVED IN negative regulation of epidermal growth factor-activated receptor activity (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); rheumatoid arthritis (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleolus (ortholog); plasma membrane (ortholog) NW_004955413 9765564 9784847 + 102020550 AGCD01013910;AGCD01013911;AGCD01013912;AGCD01013913;GBDK01014848;XM_005378975 XP_005379032 MODEL 8938719 ncrna LOC102007399 uncharacterized LOC102007399 NW_004955405 764142 804289 + 102007399 AGCD01004584;AGCD01004585;GBDF01014030;XR_259356;XR_259357 MODEL 9053481 ncrna LOC102012424 uncharacterized LOC102012424 NW_004955415 32886303 32889353 - 102012424 AGCD01016738;GBDI01281650;XR_260333 MODEL 8858964 protein-coding Ifitm5 interferon induced transmembrane protein 5 INVOLVED IN bone mineralization (ortholog); bone morphogenesis (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); plasma membrane (ortholog) NW_004955476 11745585 11747006 + 102027177 AGCD01055474;GBCE01007175;XM_005401877 XP_005401934 MODEL 39132531 snrna U6 U6 spliceosomal RNA 8746441 protein-coding Vps51 VPS51 subunit of GARP complex INVOLVED IN autophagy (ortholog); brain morphogenesis (ortholog); endocytic recycling (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog); intellectual disability (ortholog); FOUND IN EARP complex (ortholog); GARP complex (ortholog); Golgi apparatus (ortholog) NW_004955422 20091682 20102371 - 102016609 AGCD01023064;GBCQ01035443;XM_005384516 XP_005384573 MODEL 8799737 protein-coding Shisa6 shisa family member 6 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN excitatory chemical synaptic transmission (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); postsynaptic neurotransmitter receptor diffusion trapping (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); asymmetric, glutamatergic, excitatory synapse (ortholog); glutamatergic synapse (ortholog) NW_004955467 5701521 5998910 - 102004368 AGCD01051397;AGCD01051398;AGCD01051399;AGCD01051400;AGCD01051401;GBDF01307813;XM_005399742 XP_005399799 MODEL 8885615 protein-coding Gprc5b G protein-coupled receptor class C group 5 member B ENCODES a protein that exhibits protein kinase activator activity (ortholog); protein kinase binding (ortholog); protein kinase inhibitor activity (ortholog); INVOLVED IN cell volume homeostasis (ortholog); glucose homeostasis (ortholog); locomotory behavior (ortholog); ASSOCIATED WITH Megalencephalic Leukoencephalopathy with Subcortical Cysts 3 (ortholog); FOUND IN cell surface (ortholog); cytosol (ortholog); extracellular exosome (ortholog) NW_004955442 3548478 3571341 - 102011052 AGCD01037507;GBBH01090860;GBCQ01062670;XM_005391116 XP_005391173 MODEL 8725005 protein-coding LOC102025149 olfactory receptor 1013-like NW_004955511 1785957 1786877 + 102025149 AGCD01066380;XM_005408244 XP_005408301 MODEL 8975138 protein-coding Ppp4r2 protein phosphatase 4 regulatory subunit 2 ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); regulation of double-strand break repair (ortholog); regulation of double-strand break repair via homologous recombination (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955421 15165836 15220509 - 102027194 AGCD01021969;AGCD01021970;GBCQ01094246;XM_005383766;XM_013513753 XP_005383823;XP_013369207 MODEL 39133456 misc_rna NRON non-coding repressor of NFAT 8840664 protein-coding Dhx32 DEAH-box helicase 32 (putative) ASSOCIATED WITH distal 10q deletion syndrome (ortholog); Thyroid Neoplasms (ortholog); FOUND IN mitochondrion (ortholog) NW_004955477 3720988 3778424 - 102009496 AGCD01055562;AGCD01055563;AGCD01055564;AGCD01055565;AGCD01055566;GBBH01050486;GBDJ01273219;XM_013503051 XP_013358505 MODEL 8769342 protein-coding LOC102023785 kinesin-like protein KIF19 NW_004955460 12881467 12915982 - 102023785 AGCD01048664;GBBH01028491;XM_005397970 XP_005398027 MODEL 8868489 pseudo LOC102028829 ataxin-3-like NW_004955457 8642531 8660437 - 102028829 AGCD01046914 MODEL 9054982 pseudo LOC102009285 WW domain-containing adapter protein with coiled-coil pseudogene NW_004955487 7895732 7897622 - 102009285 AGCD01059414 MODEL 10074645 protein-coding LOC106149653 keratin-associated protein 1-3-like NW_004955451 15446109 15447042 - 106149653 AGCD01043607;XM_013519177 XP_013374631 MODEL 8866887 protein-coding Slc17a4 solute carrier family 17 member 4 ENCODES a protein that exhibits thyroid hormone transmembrane transporter activity (ortholog); urate transmembrane transporter activity (ortholog); INVOLVED IN sodium-dependent phosphate transport (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog) NW_004955483 1307081 1345962 - 102029969 AGCD01057645;GBCQ01012294;XM_005403342;XM_013503755 XP_005403399;XP_013359209 MODEL 8811386 pseudo LOC102017192 60S ribosomal protein L5 pseudogene NW_004955406 29987004 29987892 - 102017192 AGCD01006355 MODEL 8890113 protein-coding Nrp1 neuropilin 1 ENCODES a protein that exhibits growth factor binding (ortholog); GTPase activator activity (ortholog); protein kinase binding (ortholog); INVOLVED IN angiogenesis (ortholog); angiogenesis involved in coronary vascular morphogenesis (ortholog); artery morphogenesis (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); COVID-19 (ortholog); diabetic retinopathy (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); cytosol (ortholog) NW_004955462 4101997 4241012 + 102024435 AGCD01049216;AGCD01049217;GBDI01070095;XM_005398143;XM_005398144;XM_005398145;XM_005398146;XM_005398147;XM_005398148 XP_005398200;XP_005398201;XP_005398202;XP_005398203;XP_005398204;XP_005398205 MODEL 9065194 ncrna LOC102018396 uncharacterized LOC102018396 NW_004955417 27113467 27122607 + 102018396 AGCD01018533;GBCE01184006;XR_260504 MODEL 8968521 protein-coding Dhx33 DEAH-box helicase 33 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); double-stranded RNA binding (ortholog); mRNA binding (ortholog); INVOLVED IN positive regulation of MAPK cascade (ortholog); positive regulation of NF-kappaB transcription factor activity (ortholog); positive regulation of NLRP3 inflammasome complex assembly (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 25 (ortholog); FOUND IN cytoplasm (ortholog); NLRP3 inflammasome complex (ortholog); nucleolus (ortholog) NW_004955467 10797464 10819083 - 102028397 AGCD01051584;GBCQ01060054;XM_005399647 XP_005399704 MODEL 8974596 pseudo LOC102005982 DCN1-like protein 1 pseudogene NW_004955582 422159 422898 - 102005982 AGCD01075756 MODEL 8845871 protein-coding Spmip10 sperm microtubule inner protein 10 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH adult onset demyelinating leukodystrophy (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN axonemal B tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955521 4444948 4448702 + 102019630 AGCD01068262;GBDF01004269;XM_005409330 XP_005409387 MODEL 9052836 protein-coding LOC102012426 BBSome-interacting protein 1-like NW_004955478 7258776 7259420 - 102012426 AGCD01055956;XM_005402160 XP_005402217 MODEL 10116187 protein-coding LOC106147230 collagen alpha-2(VI) chain-like NW_004955408 34942113 34943742 - 106147230 AGCD01008925;GBDF01085639;XM_013507570 XP_013363024 MODEL 39132532 snrna U6 U6 spliceosomal RNA 8928832 protein-coding LOC102023064 asparagine synthetase [glutamine-hydrolyzing] NW_004955432 14084222 14107610 - 102023064 AGCD01031036;GBBH01144818;GBCC01041400;XM_005388086 XP_005388143 MODEL 8979684 protein-coding Vps52 VPS52 subunit of GARP complex ENCODES a protein that exhibits syntaxin binding (ortholog); INVOLVED IN ectodermal cell differentiation (ortholog); embryonic ectodermal digestive tract development (ortholog); endocytic recycling (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 5 (ortholog); MHC class I deficiency (ortholog); Prostatic Neoplasms (ortholog); FOUND IN EARP complex (ortholog); GARP complex (ortholog); Golgi apparatus (ortholog) NW_004955437 1820355 1833615 - 102029998 AGCD01034238;GBDK01190514;XM_005389481;XM_013516885 XP_005389538;XP_013372339 MODEL 8934940 protein-coding LOC102022673 claudin-3 NW_004955456 13999561 14000545 + 102022673 AGCD01046631;GBDF01144954;GBDJ01020813;XM_005396764 XP_005396821 MODEL 8767616 protein-coding Znf513 zinc finger protein 513 ENCODES a protein that exhibits DNA binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN retina development in camera-type eye (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); optic atrophy (ortholog); retinitis pigmentosa (ortholog); FOUND IN nucleus (ortholog) NW_004955469 9340872 9344593 - 102003859 AGCD01052498;GBCE01099044;XM_005400498 XP_005400555 MODEL 8772336 pseudo LOC102018054 60S ribosomal protein L38 pseudogene NW_004955405 18308689 18309581 + 102018054 AGCD01005015 MODEL 8832805 protein-coding Bms1 BMS1 ribosome biogenesis factor INVOLVED IN ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH ectodermal dysplasia (ortholog); nonsyndromic aplasia cutis congenita (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955546 1054208 1089048 + 102004325 AGCD01072039;AGCD01072040;GBDF01089574;XM_005411758;XM_005411759;XM_005411761 XP_005411815;XP_005411816;XP_005411818 MODEL 8916772 pseudo LOC102018056 deoxycytidine kinase pseudogene NW_004955452 6316449 6326634 - 102018056 AGCD01044102;AGCD01044103;AGCD01044104;AGCD01044105 MODEL 8847908 ncrna LOC102006268 uncharacterized LOC102006268 NW_004955432 9553990 9572917 + 102006268 AGCD01030908;AGCD01030909;GBDF01017350;XR_261521 MODEL 8731168 protein-coding LOC102022676 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 NW_004955408 21612072 21613637 + 102022676 AGCD01008555;AGCD01008556;GBDF01123451;XM_013507629 XP_013363083 MODEL 8705732 protein-coding Tas2r3 taste 2 receptor member 3 ENCODES a protein that exhibits bitter taste receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); ASSOCIATED WITH Hereditary Pancreatitis (ortholog); RASopathy (ortholog); Sengers syndrome (ortholog) NW_004955494 1799438 1800388 - 102006678 AGCD01061424;XM_005405533 XP_005405590 MODEL 9018676 protein-coding Usp43 ubiquitin specific peptidase 43 NW_004955467 7392393 7458852 - 102009163 AGCD01051435;GBDI01309954;GBDK01220490;XM_013522153;XM_013522154 XP_013377607;XP_013377608 MODEL 8806346 protein-coding Kng1 kininogen 1 ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (ortholog); hormone activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN negative regulation of blood coagulation (ortholog); negative regulation of cell adhesion (ortholog); negative regulation of proteolysis (ortholog); PARTICIPATES IN kallikrein-kinin cascade pathway; kinin signaling pathway; syndecan signaling pathway; ASSOCIATED WITH 3MC syndrome 1 (ortholog); acquired angioedema (ortholog); acute kidney failure (ortholog); FOUND IN extracellular space (ortholog) NW_004955420 20989197 21016084 - 102029517 AGCD01021118;AGCD01021119;GBDF01225377;XM_005383265;XM_005383266;XM_013513316 XP_005383322;XP_005383323;XP_013368770 MODEL 9031505 protein-coding LOC102027154 dynein light chain 1, cytoplasmic-like NW_004955410 29349071 29349349 - 102027154 AGCD01011287;XM_005377578 XP_005377635 MODEL 8899036 pseudo LOC102007401 zinc finger MYM-type protein 5-like NW_004955452 14055063 14061537 + 102007401 AGCD01044449 MODEL 8837596 pseudo LOC102018399 heterogeneous nuclear ribonucleoprotein A1-like NW_004955484 1981678 1990275 + 102018399 AGCD01058075;AGCD01058076 MODEL 39132821 snrna U6 U6 spliceosomal RNA 9036522 protein-coding Lrp2 LDL receptor related protein 2 ENCODES a protein that exhibits amyloid-beta binding (ortholog); calcium ion binding (ortholog); cargo receptor activity (ortholog); INVOLVED IN amyloid-beta clearance (ortholog); animal organ regeneration (ortholog); aorta development (ortholog); PARTICIPATES IN altered Hedgehog signaling pathway; Hedgehog signaling pathway; pancreatic cancer pathway; ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); acute kidney failure (ortholog); Albuminuria (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); axon (ortholog) NW_004955449 5155109 5314886 + 102030138 AGCD01041922;AGCD01041923;AGCD01041924;AGCD01041925;AGCD01041926;GBCQ01000856;XM_013518692 XP_013374146 MODEL 9045540 pseudo LOC102026120 eukaryotic translation initiation factor 5B-like NW_004955420 16324540 16326940 + 102026120 AGCD01020989 MODEL 8710547 ncrna LOC102012427 uncharacterized LOC102012427 NW_004955479 4854411 4862694 - 102012427 AGCD01056335;AGCD01056336;GBDF01305284;XR_001230876 MODEL 9026239 pseudo LOC102020502 cell cycle control protein 50A pseudogene NW_004955402 7959763 7962271 - 102020502 AGCD01000188;XM_005372665;XM_005372666 MODEL 8987533 protein-coding Ybx2 Y-box binding protein 2 ENCODES a protein that exhibits chromatin binding (ortholog); lipid binding (ortholog); mRNA 3'-UTR binding (ortholog); INVOLVED IN mRNA stabilization (ortholog); negative regulation of translation (ortholog); oocyte development (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytoplasm (ortholog); ribonucleoprotein complex (ortholog) NW_004955467 9624506 9629904 + 102008613 AGCD01051520;GBDF01004444;XM_013522114;XM_013522115;XM_013522116;XM_013522117;XM_013522118 XP_013377568;XP_013377569;XP_013377570;XP_013377571;XP_013377572 MODEL 8924426 ncrna LOC102003404 uncharacterized LOC102003404 NW_004955404 18428351 18441554 + 102003404 AGCD01003616;GBDF01251601;XR_259317 MODEL 8793401 protein-coding Ppp4r3a protein phosphatase 4 regulatory subunit 3A INVOLVED IN gluconeogenesis (ortholog); positive regulation of gluconeogenesis (ortholog); protein dephosphorylation (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955438 13731900 13769189 - 102019325 AGCD01035303;AGCD01035304;GBDI01127180;XM_005390304;XM_005390305 XP_005390361;XP_005390362 MODEL 8809016 protein-coding Vps53 VPS53 subunit of GARP complex INVOLVED IN endocytic recycling (ortholog); lysosomal transport (ortholog); protein targeting to lysosome (ortholog); ASSOCIATED WITH genetic disease (ortholog); microcephaly (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); EARP complex (ortholog); GARP complex (ortholog) NW_004955481 2130669 2265065 - 102006773 AGCD01056867;AGCD01056868;AGCD01056869;AGCD01056870;AGCD01056871;AGCD01056872;GBBH01193265;GBDJ01318200;XM_013503465 XP_013358919 MODEL 8767981 pseudo LOC102020505 non-histone chromosomal protein HMG-17 pseudogene NW_004955449 288367 289486 - 102020505 AGCD01041762 MODEL 8795440 protein-coding LOC102007756 two pore calcium channel protein 2-like NW_004955470 3199435 3237984 - 102007756 AGCD01052693;GBDK01185352;XM_005400630;XM_005400631;XM_005400632;XM_013522828;XM_013522829 XP_005400687;XP_005400688;XP_005400689;XP_013378282;XP_013378283 MODEL 8959292 pseudo LOC102009287 E3 SUMO-protein ligase PIAS2-like NW_004955421 24211084 24213430 - 102009287 AGCD01022209 MODEL 8979167 pseudo LOC102008893 60S ribosomal protein L17 pseudogene NW_004955439 18545099 18545654 + 102008893 AGCD01036056 MODEL 8930280 protein-coding Slc17a5 solute carrier family 17 member 5 ENCODES a protein that exhibits D-glucuronate transmembrane transporter activity (ortholog); sialic acid transmembrane transporter activity (ortholog); INVOLVED IN neurotransmitter loading into synaptic vesicle (ortholog); response to bacterium (ortholog); sialic acid transport (ortholog); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; sialic acid storage disease pathway; ASSOCIATED WITH enhanced S-cone syndrome (ortholog); focal segmental glomerulosclerosis (ortholog); focal segmental glomerulosclerosis 1 (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955493 8693933 8719250 - 102023049 AGCD01061332;AGCD01061333;AGCD01061334;AGCD01061335;AGCD01061336;GBDJ01130112;GBDK01135048;XM_013504876 XP_013360330 MODEL 8999777 protein-coding Ybx3 Y-box binding protein 3 ENCODES a protein that exhibits DNA binding (ortholog); mRNA 3'-UTR binding (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); apoptotic process (ortholog); cellular hyperosmotic response (ortholog); ASSOCIATED WITH Optic Nerve Injuries (ortholog); FOUND IN bicellular tight junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955413 7090085 7111542 + 102020236 AGCD01013798;AGCD01013799;AGCD01013800;GBBH01032211;GBCE01028229;XM_013511652 XP_013367106 MODEL 39131869 snrna U1 U1 spliceosomal RNA 8951352 ncrna LOC102008894 uncharacterized LOC102008894 NW_004955545 2826658 2829716 + 102008894 AGCD01071923;GBDF01218328;XR_264881 MODEL 10254376 protein-coding Shisa7 shisa family member 7 ENCODES a protein that exhibits GABA receptor binding (ortholog); ionotropic glutamate receptor binding (ortholog); INVOLVED IN gamma-aminobutyric acid receptor clustering (ortholog); gamma-aminobutyric acid signaling pathway (ortholog); memory (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); asymmetric, glutamatergic, excitatory synapse (ortholog); glutamatergic synapse (ortholog) NW_004955567 840193 845093 + 106147486 AGCD01074438;AGCD01074439;GBDJ01371014;GBDJ01371016;XM_013509311 XP_013364765 MODEL 8726489 pseudo LOC102027155 septin-7-like NW_004955463 14303925 14306398 + 102027155 AGCD01049906 MODEL 9002952 pseudo LOC102007410 non-histone chromosomal protein HMG-14 pseudogene NW_004955459 7208563 7208865 + 102007410 AGCD01048098 MODEL 8771708 protein-coding Usp44 ubiquitin specific peptidase 44 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); deubiquitinase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); chromosome segregation (ortholog); negative regulation of mitotic metaphase/anaphase transition (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; FOUND IN nucleus (ortholog) NW_004955405 31977045 32006733 - 102005554 AGCD01005322;AGCD01005323;AGCD01005324;AGCD01005325;AGCD01005326;GBDK01038829;XM_005374485;XM_013518470 XP_005374542;XP_013373924 MODEL 8922294 protein-coding Tff2 trefoil factor 2 ENCODES a protein that exhibits CXCR4 chemokine receptor binding (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); cell population proliferation (ortholog); chemokine-mediated signaling pathway (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); cataract 9 multiple types (ortholog); developmental and epileptic encephalopathy 30 (ortholog); FOUND IN extracellular space (ortholog) NW_004955407 39379669 39382367 + 102014980 AGCD01007825;GBDI01010717;XM_005375830 XP_005375887 MODEL 8974197 protein-coding LOC102018404 death domain-containing membrane protein NRADD-like NW_004955420 25181345 25184190 - 102018404 AGCD01021346;GBBH01164455;XM_013513387;XM_013513388 XP_013368841;XP_013368842 MODEL 8961201 protein-coding Slc17a6 solute carrier family 17 member 6 ENCODES a protein that exhibits chloride channel activity (ortholog); L-glutamate uniporter activity (ortholog); potassium:proton antiporter activity (ortholog); INVOLVED IN hippocampus development (ortholog); hyaloid vascular plexus regression (ortholog); L-glutamate import (ortholog); ASSOCIATED WITH gnathodiaphyseal dysplasia (ortholog); intellectual disability (ortholog); learning disability (ortholog); FOUND IN early endosome (ortholog); excitatory synapse (ortholog); neuron projection (ortholog) NW_004955476 2813368 2854371 + 102009833 AGCD01055235;XM_005401732 XP_005401789 MODEL 8764255 pseudo LOC102008895 60S ribosomal protein L26-like NW_004955441 12522219 12523098 + 102008895 AGCD01037123 MODEL 8819597 protein-coding Znf514 zinc finger protein 514 NW_004955470 3452342 3459974 - 102011195 AGCD01052703;GBDF01188804;XM_013522694 XP_013378148 MODEL 8925446 ncrna LOC102007414 uncharacterized LOC102007414 NW_004955410 36159193 36161406 - 102007414 AGCD01011421;GBDF01176606;XR_259905 MODEL 8909440 protein-coding LOC102004261 beta-galactosidase-1-like protein 2 NW_004955412 35259632 35292661 + 102004261 AGCD01013408;GBDI01106604;XM_005378599;XM_005378600;XM_005378601;XM_005378602;XM_013511245;XM_013511246 XP_005378656;XP_005378657;XP_005378658;XP_005378659;XP_013366699;XP_013366700 MODEL 8721119 ncrna LOC102012428 uncharacterized LOC102012428 NW_004955417 7483800 7490830 + 102012428 AGCD01018005;AGCD01018006;GBDF01137161;XR_260463 MODEL 8760726 protein-coding Usp45 ubiquitin specific peptidase 45 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN cell migration (ortholog); DNA repair (ortholog); photoreceptor cell maintenance (ortholog); ASSOCIATED WITH Dwarfism (ortholog); fundus dystrophy (ortholog); Laterality Defects, Autosomal Dominant (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955411 25315536 25375283 - 102020317 AGCD01012152;AGCD01012153;GBBH01069467;GBDF01307503;XM_013510783 XP_013366237 MODEL 8865865 pseudo LOC102017195 thioredoxin pseudogene NW_004955407 36693641 36693876 - 102017195 AGCD01007774 MODEL 8704500 ncrna LOC102018063 uncharacterized LOC102018063 NW_004955460 12992444 12996471 - 102018063 AGCD01048666;GBDK01027678;XR_001236498;XR_001236499 MODEL 9049061 protein-coding LOC102005985 uncharacterized LOC102005985 NW_004955450 13197296 13199813 + 102005985 AGCD01042729;XM_005393815 XP_005393872 MODEL 9029470 pseudo LOC102012430 39S ribosomal protein L21, mitochondrial pseudogene NW_004955417 9985249 9986014 + 102012430 AGCD01018063 MODEL 8850637 pseudo LOC102007759 rho-related GTP-binding protein RhoG-like NW_004955475 10913053 10914439 + 102007759 AGCD01055126 MODEL 8974085 protein-coding Znf516 zinc finger protein 516 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN adipose tissue development (ortholog); brown fat cell differentiation (ortholog); positive regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH Burn-McKeown syndrome (ortholog); chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN nucleus (ortholog) NW_004955402 59750682 59874987 - 102015469 AGCD01001569;AGCD01001570;AGCD01001571;AGCD01001572;GBDF01154390;XM_005373087;XM_005373088 XP_005373144;XP_005373145 MODEL 9012137 ncrna LOC102024113 uncharacterized LOC102024113 NW_004955418 18836977 18846965 - 102024113 AGCD01019183;GBDF01179969;XR_260571 MODEL 8909085 protein-coding Usp46 ubiquitin specific peptidase 46 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); deubiquitinase activity (ortholog); INVOLVED IN adult feeding behavior (ortholog); behavioral fear response (ortholog); behavioral response to ethanol (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); synapse (ortholog) NW_004955447 17915451 17975149 + 102016650 AGCD01041147;AGCD01041148;GBDJ01373800;XM_005392917;XM_005392918;XR_001235723 XP_005392974;XP_005392975 MODEL 8726565 protein-coding LOC102003182 protamine-2 NW_004955442 7306731 7307449 + 102003182 AGCD01037623;GBDF01007122;XM_005391168 XP_005391225 MODEL 9045840 protein-coding LOC102005986 cytochrome P450 2B6-like NW_004955642 41045 46562 - 102005986 AGCD01077714;AGCD01077715;GBBH01208704;XM_005415047 XP_005415104 MODEL 8782395 protein-coding Ern1 endoplasmic reticulum to nucleus signaling 1 ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); endonuclease activity (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to manganese ion (ortholog); PARTICIPATES IN endoplasmic reticulum stress - the unfolded protein response pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); Acute-On-Chronic Liver Failure (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN AIP1-IRE1 complex (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955478 7720664 7803662 + 102028189 AGCD01055988;AGCD01055989;AGCD01055990;AGCD01055991;GBBH01142310;GBDF01040833;XM_013503183 XP_013358637 MODEL 8886345 pseudo LOC102007760 uncharacterized LOC102007760 NW_004955476 4007426 4119894 - 102007760 AGCD01055264;AGCD01055265;AGCD01055266 MODEL 8729233 protein-coding Lasp1 LIM and SH3 protein 1 ENCODES a protein that exhibits actin filament binding (ortholog); monoatomic ion transmembrane transporter activity (ortholog); INVOLVED IN monoatomic ion transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Endometrial Neoplasms (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cortical actin cytoskeleton (ortholog); cytoplasm (ortholog); focal adhesion (ortholog) NW_004955451 13910891 13932506 + 102021409 AGCD01043514;GBCB01043509;GBDF01119073;XM_005394289 XP_005394346 MODEL 8703794 protein-coding Shisa8 shisa family member 8 ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog) NW_004955413 27328632 27330304 - 102012751 AGCD01014501;AGCD01014502;GBBH01127137;GBDI01328292;XM_013511364 XP_013366818 MODEL 8705710 protein-coding LOC102005997 keratin-associated protein 20-2-like NW_004955407 30123405 30123560 + 102005997 AGCD01007628;XM_005375637 XP_005375694 MODEL 8878470 ncrna LOC102004265 uncharacterized LOC102004265 NW_004955413 25404187 25406406 - 102004265 AGCD01014405;GBDK01344235;XR_260113 MODEL 39131362 protein-coding SPMIP11 sperm microtubule inner protein 11 8758286 protein-coding Ern2 endoplasmic reticulum to nucleus signaling 2 ENCODES a protein that exhibits ATP binding (ortholog); endonuclease activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN apoptotic chromosome condensation (ortholog); intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum quality control compartment (ortholog) NW_004955493 2217187 2233920 - 102014683 AGCD01060935;GBBH01165480;GBBH01165568;XM_013504864 XP_013360318 MODEL 10281950 pseudo LOC106147231 ubiquitin-40S ribosomal protein S27a-like NW_004955408 38987556 39012255 + 106147231 AGCD01009058;AGCD01009059 MODEL 8740372 protein-coding Lat linker for activation of T cells ENCODES a protein that exhibits molecular condensate scaffold activity (ortholog); protein kinase binding (ortholog); signaling adaptor activity (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); gene expression (ortholog); homeostasis of number of cells (ortholog); PARTICIPATES IN Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Brody myopathy (ortholog); chromosome 16p11.2 deletion syndrome, 220-kb (ortholog); FOUND IN cell-cell junction (ortholog); COP9 signalosome (ortholog); Golgi apparatus (ortholog) NW_004955493 6501504 6506089 - 102011210 AGCD01061118;GBBH01031283;XM_005405151;XM_013504841 XP_005405208;XP_013360295 MODEL 8982017 protein-coding Shisa9 shisa family member 9 ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN regulation of AMPA receptor activity (ortholog); regulation of postsynaptic neurotransmitter receptor activity (ortholog); regulation of short-term neuronal synaptic plasticity (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); dendritic spine membrane (ortholog); glutamatergic synapse (ortholog) NW_004955442 5537372 5817076 - 102021804 AGCD01037566;AGCD01037567;AGCD01037568;AGCD01037569;AGCD01037570;GBDF01237808;XM_005391145;XM_005391146 XP_005391202;XP_005391203 MODEL 9036266 ncrna LOC102018066 uncharacterized LOC102018066 NW_004955411 12009836 12011426 - 102018066 AGCD01011835;GBDF01078244;XR_259933 MODEL 10266440 protein-coding Spmip2 sperm microtubule inner protein 2 NW_004955471 12437203 12537997 - 106150313 AGCD01053292;AGCD01053293;AGCD01053294;AGCD01053295;AGCD01053296;GBDF01127768;XM_013522880 XP_013378334 MODEL 9061205 protein-coding LOC102028836 indolethylamine N-methyltransferase-like NW_004955410 31911807 31918851 - 102028836 AGCD01011333;GBDK01159055;XM_013510498 XP_013365952 MODEL 8865108 protein-coding Sec23b SEC23 homolog B, COPII coat complex component ASSOCIATED WITH congenital dyserythropoietic anemia (ortholog); congenital dyserythropoietic anemia type II (ortholog); COVID-19 (ortholog); FOUND IN cytosol (ortholog); endomembrane system (ortholog); endoplasmic reticulum (ortholog) NW_004955415 27044694 27075028 + 102018087 AGCD01016622;GBDF01003507;XM_005380933;XM_013512232 XP_005380990;XP_013367686 MODEL 8738551 protein-coding Znf516-dt ZNF516 divergent transcript ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); pulmonary valve stenosis (ortholog) NW_004955402 59875642 59912201 + 102013990 AGCD01001572;AGCD01001573;GBDJ01042324;XM_013512020 XP_013367474 MODEL 10338215 ncrna LOC106147232 uncharacterized LOC106147232 NW_004955532 3443811 3444217 + 106147232 AGCD01070280;GBDF01094407;XR_001232003 MODEL 9037741 protein-coding Ydjc YdjC chitooligosaccharide deacetylase homolog ASSOCIATED WITH chromosome 22q11.2 deletion syndrome, distal (ortholog); DiGeorge syndrome (ortholog) NW_004955442 17481581 17483858 + 102015669 AGCD01037955;GBDF01253063;XM_005391703 XP_005391760 MODEL 8768711 ncrna LOC102024114 uncharacterized LOC102024114 NW_004955483 8673978 8681030 - 102024114 AGCD01057842;GBDF01306700;XR_001231015;XR_001231016;XR_263875 MODEL 8756103 pseudo LOC102006269 cytochrome b-c1 complex subunit Rieske, mitochondrial-like NW_004955432 23785334 23799271 + 102006269 AGCD01031294;AGCD01031295 MODEL 8945799 protein-coding LOC102018405 uncharacterized protein C2orf78-like NW_004955486 1403402 1408342 - 102018405 AGCD01058952;AGCD01058953;XM_013504140 XP_013359594 MODEL 9062899 pseudo LOC102007765 mitochondrial fission factor-like NW_004955416 10152452 10153091 + 102007765 AGCD01017109 MODEL 10322060 ncrna LOC106147233 uncharacterized LOC106147233 NW_004955532 896775 898357 + 106147233 AGCD01070157;AGCD01070158;GBDF01303532;XR_001232004 MODEL 8801136 protein-coding LOC102007418 olfactory receptor 143-like NW_004955412 25270890 25271828 + 102007418 AGCD01013143;XM_005378419 XP_005378476 MODEL 8757357 ncrna LOC102008896 uncharacterized LOC102008896 NW_004955547 2750784 2754477 + 102008896 AGCD01072294;GBBH01190398;XR_001232234;XR_001232235;XR_264910 MODEL 8887014 protein-coding Ppp4r3b protein phosphatase 4 regulatory subunit 3B INVOLVED IN gluconeogenesis (ortholog); positive regulation of gluconeogenesis (ortholog); protein dephosphorylation (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955424 27461919 27520649 + 102007034 AGCD01025118;GBCB01042305;GBDF01005409;XM_013514663;XM_013514664;XM_013514665;XM_013514666 XP_013370117;XP_013370118;XP_013370119;XP_013370120 MODEL 9025723 protein-coding Vps54 VPS54 subunit of GARP complex INVOLVED IN apoptotic DNA fragmentation (ortholog); astrocyte differentiation (ortholog); cellular response to progesterone stimulus (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Bardet-Biedl syndrome (ortholog); Nerve Degeneration (ortholog); FOUND IN cytoplasm (ortholog); GARP complex (ortholog); Golgi apparatus (ortholog) NW_004955424 20329009 20443652 + 102010283 AGCD01024849;AGCD01024850;AGCD01024851;AGCD01024852;AGCD01024853;AGCD01024854;AGCD01024855;GBDF01305129;GBDI01223376;XM_005385705 XP_005385762 MODEL 8864807 protein-coding Dhx34 DExH-box helicase 34 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); nuclear-transcribed mRNA catabolic process (ortholog); positive regulation of phosphorylation (ortholog); ASSOCIATED WITH Dwarfism (ortholog); epilepsy (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955574 1248058 1267399 + 102009334 AGCD01075171;GBDJ01135621;XM_005413866;XM_013509536;XM_013509537 XP_005413923;XP_013364990;XP_013364991 MODEL 8882356 pseudo LOC102026122 small nuclear ribonucleoprotein Sm D2 pseudogene NW_004955490 632637 633094 + 102026122 AGCD01060078 MODEL 8903297 ncrna LOC102004269 uncharacterized LOC102004269 NW_004955469 7286277 7287635 + 102004269 AGCD01052412;AGCD01052413;GBDF01308355;XR_263434 MODEL 8864746 protein-coding LOC102007770 olfactory receptor 2T27-like NW_004955418 29729166 29730179 + 102007770 AGCD01019481;XM_005382359 XP_005382416 MODEL 8832879 protein-coding LOC102006272 zinc finger protein 474-like NW_004955521 253407 305771 + 102006272 AGCD01068134;GBDJ01215638;XM_005409288;XM_013507095;XM_013507096 XP_005409345;XP_013362549;XP_013362550 MODEL 9035208 pseudo LOC102008897 60S ribosomal protein L36a-like NW_004955550 1877604 1877922 - 102008897 AGCD01072592 MODEL 8980950 ncrna LOC102012432 uncharacterized LOC102012432 NW_004955418 28369715 28371889 + 102012432 AGCD01019436;GBDF01147816;XR_260592 MODEL 8860481 protein-coding Satb1 SATB homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN activated T cell proliferation (ortholog); CD4-positive, alpha-beta T cell differentiation (ortholog); CD8-positive, alpha-beta T cell differentiation (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); Animal Disease Models (ortholog); autism spectrum disorder (ortholog); FOUND IN chromatin (ortholog); heterochromatin (ortholog); nuclear body (ortholog) NW_004955430 10587539 10683887 - 102029889 AGCD01029438;AGCD01029439;AGCD01029440;GBDI01013807;XM_005387457;XM_005387458;XM_013515670;XM_013515671;XM_013515672 XP_005387514;XP_005387515;XP_013371124;XP_013371125;XP_013371126 MODEL 8954008 pseudo LOC102024720 60S ribosomal protein L23 pseudogene NW_004955436 2055161 2055602 - 102024720 AGCD01033601 MODEL 9050315 protein-coding LOC102007420 cytochrome P450 2D16-like NW_004955413 27581708 27585916 - 102007420 AGCD01014517;GBCQ01010821;XM_005379405 XP_005379462 MODEL 9004868 protein-coding Tff3 trefoil factor 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of glucose metabolic process (ortholog); response to peptide hormone (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; interleukin-4 signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Animal Hepatitis (ortholog); cataract 9 multiple types (ortholog); FOUND IN extracellular region (ortholog); secretory granule (ortholog) NW_004955407 39398534 39401085 + 102015285 AGCD01007825;GBDF01114936;XM_005375831 XP_005375888 MODEL 8721741 pseudo LOC102007773 BAG family molecular chaperone regulator 5-like NW_004955484 8703188 8705376 + 102007773 AGCD01058394 MODEL 8771680 protein-coding Tas2r38 taste 2 receptor member 38 ENCODES a protein that exhibits bitter taste receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); Hereditary Pancreatitis (ortholog); RASopathy (ortholog); FOUND IN plasma membrane (ortholog) NW_004955494 1659692 1662712 + 102005055 AGCD01061419;XM_013505004 XP_013360458 MODEL 8877689 pseudo LOC102003185 protein phosphatase inhibitor 2 pseudogene NW_004955562 2132567 2195973 - 102003185 AGCD01074022;AGCD01074023;AGCD01074024;AGCD01074025;AGCD01074026;AGCD01074027;AGCD01074028;XM_005413094 MODEL 9060574 ncrna LOC102028841 uncharacterized LOC102028841 NW_004955465 11698092 11699855 - 102028841 AGCD01050531;GBDK01348327;XR_263270 MODEL 8974771 pseudo LOC102012433 calcyclin-binding protein pseudogene NW_004955419 25409135 25411025 - 102012433 AGCD01020385 MODEL 8799199 protein-coding LOC102015403 olfactory receptor 226-like NW_004955477 11120415 11121371 - 102015403 AGCD01055716;XM_005402086 XP_005402143 MODEL 8748507 ncrna LOC102024721 uncharacterized LOC102024721 NW_004955437 6185154 6187147 - 102024721 AGCD01034421;GBDI01167867;XR_261860 MODEL 8859754 protein-coding Tfg trafficking from ER to golgi regulator ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum exit site (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955427 2328676 2362050 + 102023936 AGCD01026895;AGCD01026896;AGCD01026897;GBBH01060487;GBDF01082468;XM_005386305 XP_005386362 MODEL 8763885 protein-coding Tnk1 tyrosine kinase non receptor 1 ENCODES a protein that exhibits ATP binding (ortholog); non-membrane spanning protein tyrosine kinase activity (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN negative regulation of cell growth (ortholog); negative regulation of Ras protein signal transduction (ortholog); protein autophosphorylation (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 54 (ortholog); common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955467 9539693 9547419 - 102016463 AGCD01051516;GBDK01237114;XM_005399502;XM_013522120;XM_013522121 XP_005399559;XP_013377574;XP_013377575 MODEL 8927680 pseudo LOC102018407 probable C-mannosyltransferase DPY19L2 pseudogene NW_004955493 1188575 1191835 + 102018407 AGCD01060884 MODEL 8849679 ncrna LOC102006000 uncharacterized LOC102006000 NW_004955408 27481149 27486049 + 102006000 AGCD01008679;GBDF01076903;XR_259721 MODEL 39132822 snrna U6 U6 spliceosomal RNA 39131875 snrna U1 U1 spliceosomal RNA 8725555 pseudo LOC102015407 uncharacterized protein C12orf45 homolog pseudogene NW_004955419 3283262 3285627 + 102015407 AGCD01019716 MODEL 9025217 protein-coding Ero1a endoplasmic reticulum oxidoreductase 1 alpha ENCODES a protein that exhibits oxidoreductase activity (ortholog); protein-disulfide reductase activity (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); cell redox homeostasis (ortholog); cellular response to hypoxia (ortholog); ASSOCIATED WITH Brain Hypoxia-Ischemia (ortholog); FOUND IN dendrite (ortholog); endoplasmic reticulum (ortholog); extracellular space (ortholog) NW_004955409 10495892 10533383 + 102009917 AGCD01009474;AGCD01009475;GBCE01145796;XM_005376780 XP_005376837 MODEL 8956245 protein-coding Lrp2bp LRP2 binding protein ASSOCIATED WITH autistic disorder (ortholog); dilated cardiomyopathy (ortholog); Herpes Simplex Encephalitis 1 (ortholog) NW_004955403 23657994 23678042 + 102027369 AGCD01002249;AGCD01002250;GBBH01072551;XM_005373466;XM_005373467;XM_005373468;XR_001233531 XP_005373523;XP_005373524;XP_005373525 MODEL 8783306 ncrna LOC102003405 uncharacterized LOC102003405 NW_004955452 4390516 4398593 - 102003405 AGCD01043981;GBDK01434065;XR_262649 MODEL 8916773 protein-coding LOC102018410 vomeronasal type-2 receptor 116-like NW_004955495 45276 78599 - 102018410 AGCD01061594;AGCD01061595;AGCD01061596;XM_013505040 XP_013360494 MODEL 8949014 protein-coding Shisal1 shisa like 1 ASSOCIATED WITH intellectual disability (ortholog); Phelan-McDermid syndrome (ortholog) NW_004955413 29084441 29185524 - 102023138 AGCD01014576;AGCD01014577;AGCD01014578;GBCQ01175065;XM_005379460;XM_005379461;XM_005379462;XM_005379463 XP_005379517;XP_005379518;XP_005379519;XP_005379520 MODEL 39131880 snrna U1 U1 spliceosomal RNA 8953982 ncrna LOC102022682 uncharacterized LOC102022682 NW_004955411 25085395 25090288 + 102022682 AGCD01012149;GBDK01264939;XR_001232798;XR_259942 MODEL 8847131 protein-coding Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor ENCODES a protein that exhibits beta-catenin binding (ortholog); integrin binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); brain development (ortholog); cell-cell junction organization (ortholog); ASSOCIATED WITH acoustic neuroma (ortholog); breast cancer (ortholog); Breast Cancer, Familial (ortholog); FOUND IN adherens junction (ortholog); apical part of cell (ortholog); cell body (ortholog) NW_004955455 3862804 3950669 + 102009575 AGCD01045659;AGCD01045660;AGCD01045661;GBDI01137619;XM_005396216;XM_005396217;XM_005396218 XP_005396273;XP_005396274;XP_005396275 MODEL 8720386 pseudo LOC102007426 GMP synthase [glutamine-hydrolyzing] pseudogene NW_004955476 3481522 3489789 + 102007426 AGCD01055252 MODEL 8734411 protein-coding Nrp2 neuropilin 2 ENCODES a protein that exhibits identical protein binding (ortholog); semaphorin receptor activity (ortholog); INVOLVED IN axon extension involved in axon guidance (ortholog); axon guidance (ortholog); cellular response to leukemia inhibitory factor (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); genetic disease (ortholog); FOUND IN axon (ortholog); glutamatergic synapse (ortholog); postsynaptic membrane (ortholog) NW_004955457 9197621 9316789 - 102019031 AGCD01046933;AGCD01046934;AGCD01046935;GBBH01033510;XM_005397004;XM_005397005;XM_005397007;XM_005397008;XM_013520730;XM_013520731;XM_013520732;XM_013520733 XP_005397061;XP_005397062;XP_005397064;XP_005397065;XP_013376184;XP_013376185;XP_013376186;XP_013376187 MODEL 8801185 ncrna LOC102009289 uncharacterized LOC102009289 NW_004955422 20690361 20700604 - 102009289 AGCD01023085;AGCD01023086;GBCB01050340;XR_260904 MODEL 8977515 pseudo LOC102007778 WW domain-containing adapter protein with coiled-coil pseudogene NW_004955488 8069378 8071802 - 102007778 AGCD01059700 MODEL 39131885 snrna U1 U1 spliceosomal RNA 8743377 ncrna LOC102003187 uncharacterized LOC102003187 NW_004955574 857172 858868 - 102003187 AGCD01075135;GBBH01101002;XR_265062 MODEL 8985813 protein-coding LOC102023786 cytochrome c, somatic ENCODES a protein that exhibits enzyme binding (ortholog); heme binding (ortholog); INVOLVED IN response to auditory stimulus; apoptotic process (ortholog); glial cell apoptotic process (ortholog); PARTICIPATES IN cardiolipin metabolic pathway; ceramide signaling pathway; electron transport chain pathway; ASSOCIATED WITH brain ischemia (ortholog); Chloracne (ortholog); cholangiocarcinoma (ortholog); FOUND IN apoptosome (ortholog); cytosol (ortholog); mitochondrial intermembrane space (ortholog) NW_004955410 27086405 27089255 - 102023786 AGCD01011208;GBDF01004683;XM_005377428;XM_005377429 XP_005377485;XP_005377486 MODEL 9025653 pseudo LOC102007430 protein archease pseudogene NW_004955481 2490488 2495172 - 102007430 AGCD01056876 MODEL 10323096 ncrna LOC106149654 uncharacterized LOC106149654 NW_004955451 15711631 15723922 + 106149654 AGCD01043634;AGCD01043635;GBDI01085972;XR_001235963;XR_001235964 MODEL 8769442 protein-coding LOC102027158 calreticulin-like NW_004955464 7446068 7511010 + 102027158 AGCD01050060;AGCD01050061;AGCD01050062;AGCD01050063;GBDF01245258;XM_005398776 XP_005398833 MODEL 8764049 pseudo LOC102026123 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform pseudogene NW_004955421 21336327 21339945 + 102026123 AGCD01022107 MODEL 8790648 ncrna LOC102015411 uncharacterized LOC102015411 NW_004955487 2724146 2728644 + 102015411 AGCD01059266;GBDF01277703;XR_263983 MODEL 8866487 protein-coding Tfip11 tuftelin interacting protein 11 INVOLVED IN negative regulation of protein-containing complex assembly (ortholog); spliceosomal complex disassembly (ortholog); ASSOCIATED WITH cataract 23 (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); chromosome, telomeric region (ortholog); extracellular matrix (ortholog) NW_004955455 1083816 1097233 - 102015479 AGCD01045568;GBDK01232399;XM_005396148 XP_005396205 MODEL 8718456 protein-coding Usp47 ubiquitin specific peptidase 47 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); deubiquitinase activity (ortholog); WD40-repeat domain binding (ortholog); INVOLVED IN base-excision repair (ortholog); DNA damage response (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); SCF ubiquitin ligase complex (ortholog) NW_004955414 27357602 27462481 + 102010360 AGCD01015663;GBDK01139174;XM_005380290;XM_005380291;XM_005380292;XM_013511963 XP_005380347;XP_005380348;XP_005380349;XP_013367417 MODEL 8924430 protein-coding LOC102004967 vomeronasal type-2 receptor 116-like NW_004955524 2220139 2229192 + 102004967 AGCD01068802;XM_013507194 XP_013362648 MODEL 8766424 protein-coding Znf518a zinc finger protein 518A ASSOCIATED WITH agammaglobulinemia 4 (ortholog); genetic disease (ortholog) NW_004955507 2350734 2377855 + 102014694 AGCD01065586;GBDF01176646;XM_005407566;XM_005407567;XM_005407568;XM_005407569;XM_013506207;XM_013506208;XM_013506209;XM_013506210 XP_005407623;XP_005407624;XP_005407625;XP_005407626;XP_013361661;XP_013361662;XP_013361663;XP_013361664 MODEL 8755113 protein-coding Knl1 kinetochore scaffold 1 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); chromosome segregation (ortholog); DNA damage response (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); COVID-19 (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); kinetochore (ortholog) NW_004955416 7498983 7561620 + 102024004 AGCD01016984;AGCD01016985;AGCD01016986;AGCD01016987;AGCD01016988;AGCD01016989;AGCD01016990;GBBH01122002;XM_005381250;XM_005381251;XM_005381252 XP_005381307;XP_005381308;XP_005381309 MODEL 39131467 protein-coding MKRN3 makorin ring finger protein 3 9037520 protein-coding Satb2 SATB homeobox 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); histone deacetylase binding (ortholog); INVOLVED IN cartilage development (ortholog); chromatin remodeling (ortholog); embryonic pattern specification (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); cerebellar ataxia (ortholog); cleft palate (ortholog); FOUND IN histone deacetylase complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955403 1663676 1811088 + 102010009 AGCD01001724;AGCD01001725;GBCE01064967;XM_013511972 XP_013367426 MODEL 8893361 protein-coding Lrp3 LDL receptor related protein 3 INVOLVED IN negative regulation of fat cell differentiation (ortholog); negative regulation of gene expression (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); hereditary spastic paraplegia 75 (ortholog) NW_004955468 2957156 2967678 + 102026624 AGCD01051849;GBCE01118149;GBDJ01017389;XM_013522476 XP_013377930 MODEL 8977051 protein-coding LOC102017197 carbonyl reductase [NADPH] 1-like NW_004955407 35239477 35254421 + 102017197 AGCD01007733;AGCD01007734;GBCQ01007846;GBDF01041818;XM_013504561 XP_013360015 MODEL 8843329 protein-coding LOC102018412 gastrokine-3-like NW_004955424 16081754 16088325 - 102018412 AGCD01024737;GBDI01336159;XM_005385655 XP_005385712 MODEL 8829083 pseudo LOC102023072 leucine-rich repeat transmembrane protein FLRT1-like NW_004955436 799748 800600 + 102023072 AGCD01033559 MODEL 8728324 protein-coding Nfam1 NFAT activating protein with ITAM motif 1 ENCODES a protein that exhibits transmembrane signaling receptor activity (ortholog); INVOLVED IN B cell differentiation (ortholog); B cell receptor signaling pathway (ortholog); calcineurin-NFAT signaling cascade (ortholog); ASSOCIATED WITH common variable immunodeficiency 4 (ortholog); Developmental Delay with Variable Intellectual Impairment and Behavioral Abnormalities (ortholog); intellectual disability (ortholog); FOUND IN cell surface (ortholog); membrane (ortholog); membrane raft (ortholog) NW_004955413 27865672 27893793 - 102010890 AGCD01014536;GBCE01185127;XM_005379417;XM_013511660 XP_005379474;XP_013367114 MODEL 10231720 ncrna LOC106147234 uncharacterized LOC106147234 NW_004955408 24557024 24571148 - 106147234 AGCD01008618;XR_001232005 MODEL 10082705 protein-coding Mkrn3 makorin ring finger protein 3 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Angelman syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog) NW_004955416 31052939 31054615 + 106148130 AGCD01017725;XM_013512447 XP_013367901 MODEL 39131889 snrna U1 U1 spliceosomal RNA 8968151 protein-coding LOC102009291 uncharacterized LOC102009291 NW_004955495 1844763 1851588 - 102009291 AGCD01061735;GBBH01140669;XM_005405612;XM_005405613;XM_005405614;XM_013505148 XP_005405669;XP_005405670;XP_005405671;XP_013360602 MODEL 39132823 snrna U6 U6 spliceosomal RNA 8732721 protein-coding LOC102003190 class I histocompatibility antigen, B alpha chain-like NW_004955583 377680 382207 + 102003190 AGCD01075815;AGCD01075816;GBCE01000219;GBDK01001528;XM_013509791 XP_013365245 MODEL 9000346 pseudo LOC102020512 optineurin pseudogene NW_004955623 85965 87245 + 102020512 AGCD01077409 MODEL 8953115 ncrna LOC102023788 uncharacterized LOC102023788 NW_004955464 12103577 12165652 - 102023788 AGCD01050180;AGCD01050181;AGCD01050182;AGCD01050183;GBDF01194451;XR_001236682;XR_001236683;XR_263216 MODEL 39131893 snrna U1 U1 spliceosomal RNA 8968408 protein-coding Ero1b endoplasmic reticulum oxidoreductase 1 beta ENCODES a protein that exhibits disulfide oxidoreductase activity (ortholog); protein-disulfide reductase activity (ortholog); thiol oxidase activity (ortholog); INVOLVED IN cell redox homeostasis (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); extracellular matrix organization (ortholog); ASSOCIATED WITH cataract (ortholog); Chediak-Higashi syndrome (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog); membrane (ortholog) NW_004955492 3845406 3911671 + 102021987 AGCD01060701;AGCD01060702;AGCD01060703;AGCD01060704;AGCD01060705;GBBH01198228;GBDF01009565;XM_013504712 XP_013360166 MODEL 10251153 ncrna LOC106149217 uncharacterized LOC106149217 NW_004955405 5941893 5952376 + 106149217 AGCD01004689;GBDF01208941;XR_001235235;XR_001235241 MODEL 39132534 snrna U6 U6 spliceosomal RNA 8865810 protein-coding Shisal2a shisa like 2A NW_004955464 6520481 6547181 - 102016574 AGCD01050029;AGCD01050030;GBDJ01051237;XM_005398572;XM_005398573 XP_005398629;XP_005398630 MODEL 9068203 pseudo LOC102020513 cytochrome c-like NW_004955403 23033301 23033617 - 102020513 AGCD01002238 MODEL 9062988 protein-coding Lat2 linker for activation of T cells family member 2 ENCODES a protein that exhibits SH2 domain binding (ortholog); INVOLVED IN B cell activation (ortholog); B cell receptor signaling pathway (ortholog); calcium-mediated signaling (ortholog); ASSOCIATED WITH acute promyelocytic leukemia (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN membrane raft (ortholog); plasma membrane (ortholog) NW_004955456 13674190 13688611 - 102012928 AGCD01046610;GBDK01008866;XM_013520622;XM_013520623;XM_013520624 XP_013376076;XP_013376077;XP_013376078 MODEL 39132535 snrna U6 U6 spliceosomal RNA 8905193 pseudo LOC102018416 uncharacterized LOC102018416 NW_004955427 9744289 9780161 - 102018416 AGCD01027104;XR_261251 MODEL 8855045 protein-coding Lrp4 LDL receptor related protein 4 ENCODES a protein that exhibits apolipoprotein binding (ortholog); coreceptor activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN amyloid-beta clearance by cellular catabolic process (ortholog); dendrite morphogenesis (ortholog); dorsal/ventral pattern formation (ortholog); PARTICIPATES IN acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH Cenani-Lenz syndactyly syndrome (ortholog); congenital disorder of glycosylation type IIc (ortholog); congenital myasthenic syndrome (ortholog); FOUND IN cell surface (ortholog); dendrite (ortholog); neuromuscular junction (ortholog) NW_004955422 1191338 1238227 + 102003144 AGCD01022449;AGCD01022450;AGCD01022451;GBDF01290662;GBDJ01313047;XM_013513935 XP_013369389 MODEL 9034945 pseudo LOC102023075 casein kinase II subunit alpha pseudogene NW_004955536 314150 315348 - 102023075 AGCD01070724 MODEL 8753643 protein-coding Ifnar1 interferon alpha and beta receptor subunit 1 ENCODES a protein that exhibits cytokine binding (ortholog); interferon receptor activity (ortholog); JAK pathway signal transduction adaptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (ortholog); cellular response to interferon-alpha (ortholog); cellular response to interferon-beta (ortholog); PARTICIPATES IN type I interferon signaling pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); bacterial pneumonia (ortholog); FOUND IN plasma membrane (ortholog); receptor complex (ortholog) NW_004955407 32730973 32755404 + 102019983 AGCD01007680;GBDK01189202;XM_013504266;XM_013504267;XM_013504269 XP_013359720;XP_013359721;XP_013359723 MODEL 39132536 snrna U6 U6 spliceosomal RNA 8717743 protein-coding Gprc5c G protein-coupled receptor class C group 5 member C FOUND IN centriolar satellite (ortholog); cilium (ortholog); plasma membrane (ortholog) NW_004955553 1303176 1315482 + 102007816 AGCD01072878;GBCB01003226;XM_005412233;XM_013508636 XP_005412290;XP_013364090 MODEL 8738028 ncrna LOC102009292 uncharacterized LOC102009292 NW_004955423 372935 383250 + 102009292 AGCD01023411;GBDI01297765;XR_260937 MODEL 8724998 pseudo LOC102023080 60S ribosomal protein L13 pseudogene NW_004955443 19809334 19809985 - 102023080 AGCD01038635 MODEL 8725556 pseudo LOC102015413 40S ribosomal protein S24 pseudogene NW_004955423 1431836 1432412 + 102015413 AGCD01023434 MODEL 39132541 snrna U6 U6 spliceosomal RNA 9037309 protein-coding LOC102026126 calcium-activated chloride channel regulator 4 NW_004955423 7624926 7652410 - 102026126 AGCD01023609;XM_005385359 XP_005385416 MODEL 8838810 ncrna LOC102003191 uncharacterized LOC102003191 NW_004955402 40910787 40919051 - 102003191 AGCD01001005;GBDF01110513;XR_259082 MODEL 8742346 protein-coding Ifnar2 interferon alpha and beta receptor subunit 2 ENCODES a protein that exhibits cytokine binding (ortholog); protein kinase binding (ortholog); type I interferon binding (ortholog); INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (ortholog); cellular response to interferon-beta (ortholog); defense response to virus (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); COVID-19 (ortholog); FOUND IN extracellular space (ortholog); plasma membrane (ortholog); receptor complex (ortholog) NW_004955407 32601862 32637852 + 102018567 AGCD01007679;GBDI01354641;XM_005375676;XM_005375677;XM_013504240 XP_005375733;XP_005375734;XP_013359694 MODEL 8721457 protein-coding LOC102022684 serpin B9-like NW_004955465 10437606 10476747 - 102022684 AGCD01050510;GBCB01089957;XM_005398917;XM_005398918;XM_005398928;XM_013521824;XM_013521825;XM_013521826;XM_013521827 XP_005398974;XP_005398975;XP_005398985;XP_013377278;XP_013377279;XP_013377280;XP_013377281 MODEL 10224424 protein-coding LOC106149218 cuticle collagen 2C-like NW_004955440 18745120 18746302 - 106149218 AGCD01036617;GBBH01204536;GBDI01110868;XM_013517445 XP_013372899 MODEL 9044936 protein-coding Bmt2 base methyltransferase of 25S rRNA 2 homolog ENCODES a protein that exhibits protein-containing complex binding (ortholog); S-adenosyl-L-methionine binding (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to methionine (ortholog); positive regulation of TORC1 signaling (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955432 19046121 19107178 - 102003997 AGCD01031165;AGCD01031166;AGCD01031167;GBDF01192648;GBDJ01278833;XM_013516035 XP_013371489 MODEL 8995606 protein-coding LOC102007781 cytochrome b-c1 complex subunit 2, mitochondrial ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN response to xenobiotic stimulus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive nonsyndromic deafness 22 (ortholog); chromosome 16p12.1 deletion syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955493 655619 689705 + 102007781 AGCD01060859;GBDF01004785;XM_005405054 XP_005405111 MODEL 8833427 protein-coding Vps72 vacuolar protein sorting 72 homolog ENCODES a protein that exhibits histone binding (ortholog); histone chaperone activity (ortholog); INVOLVED IN positive regulation of double-strand break repair via homologous recombination (ortholog); regulation of cell cycle (ortholog); somatic stem cell population maintenance (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH Dravet syndrome (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nuclear speck (ortholog); nucleosome (ortholog) NW_004955588 537122 550564 - 102027132 AGCD01076115;GBCC01026363;XM_005414503 XP_005414560 MODEL 8897032 protein-coding LOC102004271 olfactory receptor 51G2-like NW_004955414 20963996 20965027 - 102004271 AGCD01015398;XM_005380489 XP_005380546 MODEL 8991736 ncrna LOC102018069 uncharacterized LOC102018069 NW_004955412 17652061 17663017 - 102018069 AGCD01012916;GBDF01083884;XR_001232864 MODEL 8728599 protein-coding LOC102023082 cytochrome c oxidase subunit 6B2 FOUND IN mitochondrial crista (ortholog); mitochondrion (ortholog) NW_004955567 890281 891675 + 102023082 AGCD01074444;AGCD01074445;GBDF01085437;XM_005413321 XP_005413378 MODEL 8992802 protein-coding LOC102022115 uncharacterized LOC102022115 NW_004955524 3165835 3175594 - 102022115 AGCD01068862;AGCD01068863;GBDF01100035;XM_005409568;XM_013507310;XM_013507311;XM_013507312 XP_005409625;XP_013362764;XP_013362765;XP_013362766 MODEL 9002603 protein-coding Shisal2b shisa like 2B ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955446 4268531 4289011 - 102022341 AGCD01040034;GBDI01277575;XM_005392635 XP_005392692 MODEL 9057820 ncrna LOC102007431 uncharacterized LOC102007431 NW_004955482 3993841 3998952 + 102007431 AGCD01057278;GBDI01245685;XR_001231001 MODEL 8815817 protein-coding Sec23ip SEC23 interacting protein INVOLVED IN acrosome assembly (ortholog); single fertilization (ortholog); spermatid development (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum exit site (ortholog); Golgi apparatus (ortholog) NW_004955551 695026 746359 + 102013972 AGCD01072669;AGCD01072670;AGCD01072671;AGCD01072672;AGCD01072673;GBDF01088113;XM_005412171;XM_013508588 XP_005412228;XP_013364042 MODEL 8857221 protein-coding LOC102025154 zinc finger protein 85-like NW_004955432 4681460 4704789 - 102025154 AGCD01030733;AGCD01030734;AGCD01030735;AGCD01030736;AGCD01030737;GBBH01213954;GBCQ01068809;XM_013515932 XP_013371386 MODEL 8781787 protein-coding LOC102027163 zinc finger protein 850-like NW_004955468 1623956 1748535 + 102027163 AGCD01051778;AGCD01051779;AGCD01051780;GBDI01208707;XM_005399890 XP_005399947 MODEL 9062424 ncrna LOC102018076 uncharacterized LOC102018076 NW_004955413 26991201 26996200 + 102018076 AGCD01014489;AGCD01014490;GBCB01118470;XR_260115 MODEL 8955768 protein-coding Bmx BMX non-receptor tyrosine kinase ENCODES a protein that exhibits non-membrane spanning protein tyrosine kinase activity (ortholog); INVOLVED IN protein autophosphorylation (ortholog); signal transduction (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Fanconi anemia (ortholog); multiple congenital anomalies-hypotonia-seizures syndrome 2 (ortholog); FOUND IN nucleoplasm (ortholog); plasma membrane (ortholog); ruffle membrane (ortholog) NW_004955519 2638081 2689601 - 102015230 AGCD01067937;GBDI01107256;XM_005409162;XM_005409163;XM_013507003;XM_013507004 XP_005409219;XP_005409220;XP_013362457;XP_013362458 MODEL 9040848 protein-coding Lrp5 LDL receptor related protein 5 ENCODES a protein that exhibits coreceptor activity (ortholog); toxin transmembrane transporter activity (ortholog); Wnt receptor activity (ortholog); INVOLVED IN adipose tissue development (ortholog); amino acid transport (ortholog); anatomical structure regression (ortholog); PARTICIPATES IN altered Wnt signaling, canonical pathway; N-cadherin signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal dominant osteopetrosis 1 (ortholog); autosomal dominant polycystic kidney disease (ortholog); FOUND IN plasma membrane (ortholog); receptor complex (ortholog) NW_004955422 17394371 17475244 - 102004829 AGCD01022921;AGCD01022922;GBDK01238671;XM_013514225;XM_013514226 XP_013369679;XP_013369680 MODEL 8947281 pseudo LOC102023792 probable E3 ubiquitin-protein ligase HECTD2 pseudogene NW_004955466 13334048 13348086 - 102023792 AGCD01051156 MODEL 8924221 pseudo LOC102025155 prefoldin subunit 4-like NW_004955516 1138625 1139234 - 102025155 AGCD01067413 MODEL 8929757 pseudo LOC102027165 olfactory receptor 10R2-like NW_004955468 10388916 10391324 + 102027165 AGCD01052084 MODEL 8958064 ncrna LOC102015415 uncharacterized LOC102015415 NW_004955496 5673676 5679010 + 102015415 AGCD01062356;GBDI01253638;XR_264177 MODEL 9057611 pseudo LOC102026127 BBSome-interacting protein 1-like NW_004955424 1870763 1872513 - 102026127 AGCD01024249 MODEL 9017909 pseudo LOC102003193 proliferation-associated protein 2G4 pseudogene NW_004955450 4817696 4818898 + 102003193 AGCD01042479;AGCD01042480 MODEL 8947975 protein-coding Ifnb1 interferon beta 1 ENCODES a protein that exhibits chloramphenicol O-acetyltransferase activity (ortholog); cytokine activity (ortholog); cytokine receptor binding (ortholog); INVOLVED IN adaptive immune response (ortholog); B cell activation involved in immune response (ortholog); B cell proliferation (ortholog); ASSOCIATED WITH amelanotic melanoma (ortholog); anus benign neoplasm (ortholog); Aortic Remodeling (ortholog); FOUND IN extracellular space (ortholog) NW_004955434 23301623 23302304 - 102004511 AGCD01032701;XM_005388742 XP_005388799 MODEL 8877881 pseudo LOC102008902 nucleolar protein 58 pseudogene NW_004955446 12111400 12115335 + 102008902 AGCD01040224;AGCD01040225 MODEL 8792325 protein-coding Dhx35 DEAH-box helicase 35 INVOLVED IN in utero embryonic development (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog) NW_004955445 17753975 17827748 - 102007949 AGCD01039896;GBCB01099680;XM_005392524 XP_005392581 MODEL 10196448 ncrna LOC106149219 uncharacterized LOC106149219 NW_004955440 16910790 16912231 - 106149219 AGCD01036543;GBDF01151502;XR_001235247 MODEL 8801385 protein-coding Slc17a7 solute carrier family 17 member 7 ENCODES a protein that exhibits chloride channel activity (ortholog); extracellularly glutamate-gated chloride channel activity (ortholog); L-glutamate transmembrane transporter activity (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); chloride transport (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); learning disability (ortholog); Memory Disorders (ortholog); FOUND IN cerebellar mossy fiber (ortholog); excitatory synapse (ortholog); membrane (ortholog) NW_004955559 1399182 1409074 + 102017170 AGCD01073644;GBDF01145535;XM_005412884 XP_005412941 MODEL 8719443 pseudo LOC102018418 putative ATP-dependent RNA helicase Pl10 NW_004955427 10783970 10784631 + 102018418 AGCD01027157 MODEL 8840427 protein-coding LOC102024116 olfactory receptor 50-like NW_004955419 5579409 5580775 - 102024116 AGCD01019825;XM_005382924;XM_013513121 XP_005382981;XP_013368575 MODEL 8719631 protein-coding Mks1 MKS transition zone complex subunit 1 INVOLVED IN branching morphogenesis of an epithelial tube (ortholog); cardiac septum morphogenesis (ortholog); cilium assembly (ortholog); ASSOCIATED WITH atrioventricular septal defect (ortholog); Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 13 (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955451 4805542 4818233 + 102029139 AGCD01043142;GBDF01248745;XM_005394033 XP_005394090 MODEL 39132824 snrna U6 U6 spliceosomal RNA 8948617 protein-coding Ifne interferon epsilon INVOLVED IN defense response to bacterium (ortholog); defense response to virus (ortholog); natural killer cell activation (ortholog); ASSOCIATED WITH schizophrenia (ortholog) NW_004955472 12795352 12801035 - 102006570 AGCD01053817;XM_005401170 XP_005401227 MODEL 8870227 pseudo LOC102004969 putative protein FAM10A5 NW_004955435 22847866 22848965 + 102004969 AGCD01033522 MODEL 8708410 ncrna LOC102012439 uncharacterized LOC102012439 NW_004955421 24954942 25002542 - 102012439 AGCD01022225;AGCD01022226;AGCD01022227;GBCQ01157706;XR_001233829;XR_260827 MODEL 8758895 protein-coding Znf518b zinc finger protein 518B NW_004955549 2401133 2413925 + 102010311 AGCD01072469;GBDF01190305;XM_005412022 XP_005412079 MODEL 8807450 protein-coding Dhx36 DEAH-box helicase 36 ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); catalytic activity, acting on a nucleic acid (ortholog); DNA helicase activity (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); cellular response to arsenite ion (ortholog); cellular response to heat (ortholog); FOUND IN axon (ortholog); chromosome, telomeric region (ortholog); cytoplasm (ortholog) NW_004955448 5634072 5676272 - 102012706 AGCD01041373;GBDJ01388906;XM_005393058;XM_013518656 XP_005393115;XP_013374110 MODEL 9004183 pseudo LOC102024122 casein kinase I isoform alpha pseudogene NW_004955421 547617 566169 + 102024122 AGCD01021566 MODEL 8812881 protein-coding LOC102018077 WD repeat-containing protein 87-like NW_004955468 2223885 2241409 - 102018077 AGCD01051804;GBBH01142412;XM_013522301;XM_013522302;XM_013522303 XP_013377755;XP_013377756;XP_013377757 MODEL 8744334 protein-coding Nrros negative regulator of reactive oxygen species ENCODES a protein that exhibits receptor ligand inhibitor activity (ortholog); transforming growth factor beta binding (ortholog); INVOLVED IN immune response (ortholog); inflammatory response (ortholog); innate immune response (ortholog); ASSOCIATED WITH autistic disorder (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum (ortholog) NW_004955420 12792173 12798645 + 102014362 AGCD01020893;GBDJ01115309;XM_005383139 XP_005383196 MODEL 9046488 pseudo LOC102004970 dnaJ homolog subfamily C member 10-like NW_004955532 396089 401693 - 102004970 AGCD01070116;AGCD01070117 MODEL 9043343 protein-coding LOC102020515 serine protease 29-like NW_004955690 42889 45014 - 102020515 AGCD01078063;GBBH01115238;XM_005415071 XP_005415128 MODEL 9031590 protein-coding Tnk2 tyrosine kinase non receptor 2 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); identical protein binding (ortholog); protein serine/threonine/tyrosine kinase activity (ortholog); INVOLVED IN phosphorylation (ortholog); positive regulation of peptidyl-tyrosine phosphorylation (ortholog); regulation of clathrin-dependent endocytosis (ortholog); ASSOCIATED WITH Autosomal Recessive Infantile Epilepsy (ortholog); chromosome 3q29 microdeletion syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN axon (ortholog); clathrin-coated pit (ortholog); clathrin-coated vesicle (ortholog) NW_004955420 12302463 12337976 - 102004391 AGCD01020860;GBDF01285573;XM_005383103;XM_005383108;XM_005383112;XM_005383114;XM_005383118;XM_013513540;XM_013513541;XM_013513542;XM_013513543;XM_013513544;XM_013513545;XM_013513546;XM_013513547;XM_013513548;XM_013513549 XP_005383160;XP_005383165;XP_005383169;XP_005383171;XP_005383175;XP_013368994;XP_013368995;XP_013368996;XP_013368997;XP_013368998;XP_013368999;XP_013369000;XP_013369001;XP_013369002;XP_013369003 MODEL 9037512 ncrna LOC102007790 uncharacterized LOC102007790 NW_004955426 20154984 20166755 + 102007790 AGCD01026563;AGCD01026564;GBDF01299083;XR_261208 MODEL 8795020 protein-coding LOC102023795 T-cell surface glycoprotein CD1b2-like NW_004955468 10148815 10152677 + 102023795 AGCD01052067;AGCD01052068;GBDI01000190;XM_005400145 XP_005400202 MODEL 8908625 pseudo LOC102023088 ferritin light chain pseudogene NW_004955446 12914277 12915113 - 102023088 AGCD01040245;XM_005392715 MODEL 9000164 ncrna LOC102013598 uncharacterized LOC102013598 NW_004955414 27677164 27679030 - 102013598 AGCD01015664;XR_260199 MODEL 9064359 protein-coding LOC102008903 prolactin-like NW_004955576 90664 96906 - 102008903 AGCD01075255;XM_005413945 XP_005414002 MODEL 8884705 protein-coding Tfpi tissue factor pathway inhibitor INVOLVED IN cellular response to interleukin-1 (ortholog); cellular response to lipopolysaccharide (ortholog); cellular response to steroid hormone stimulus (ortholog); PARTICIPATES IN coagulation cascade pathway; syndecan signaling pathway; ASSOCIATED WITH Airway Obstruction (ortholog); atrial fibrillation (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); FOUND IN caveola (ortholog); cell surface (ortholog); extracellular space (ortholog) NW_004955403 10925155 11004229 + 102011608 AGCD01001942;AGCD01001943;AGCD01001944;AGCD01001945;GBCQ01095047;XM_005373329 XP_005373386 MODEL 8982307 protein-coding LOC102007793 solute carrier family 22 member 13 NW_004955427 25740144 25743458 + 102007793 AGCD01027551;GBDF01180895;XM_013515058 XP_013370512 MODEL 8939722 protein-coding Tnks tankyrase ENCODES a protein that exhibits histone binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN cellular response to nutrient (ortholog); negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric (ortholog); negative regulation of telomere maintenance via telomere lengthening (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955463 5589194 5770141 + 102020894 AGCD01049641;AGCD01049642;AGCD01049643;AGCD01049644;GBDF01044672;XM_005398362 XP_005398419 MODEL 8989200 protein-coding Ppp4r4 protein phosphatase 4 regulatory subunit 4 ENCODES a protein that exhibits protein phosphatase inhibitor activity (ortholog); protein serine/threonine phosphatase inhibitor activity (ortholog); INVOLVED IN blastocyst hatching (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); DICER1 syndrome (ortholog); pleuropulmonary blastoma (ortholog); FOUND IN ciliary basal body (ortholog); cilium (ortholog); cytoplasm (ortholog) NW_004955438 16237472 16332542 + 102012363 AGCD01035402;AGCD01035403;AGCD01035404;GBBH01226494;GBDI01108160;XM_005390366;XM_005390367;XM_005390368;XM_013517249 XP_005390423;XP_005390424;XP_005390425;XP_013372703 MODEL 8722856 protein-coding LOC102018423 vomeronasal type-1 receptor 90-like NW_004955429 12408891 12409616 + 102018423 AGCD01028715;XM_005387249 XP_005387306 MODEL 8760564 pseudo LOC102012453 heterogeneous nuclear ribonucleoprotein A3-like NW_004955425 6920489 6940923 - 102012453 AGCD01025375;AGCD01025376 MODEL 8840649 ncrna LOC102007794 uncharacterized LOC102007794 NW_004955506 4248624 4261163 - 102007794 AGCD01065330;GBDI01281509;XR_264348 MODEL 9060125 protein-coding Mkx mohawk homeobox ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); collagen fibril organization (ortholog); intratendonous ossification (ortholog); ASSOCIATED WITH Heterotopic Ossification (ortholog) NW_004955462 1564739 1631613 - 102013062 AGCD01049127;AGCD01049128;AGCD01049129;AGCD01049130;AGCD01049131;GBCE01137459;XM_005398100;XM_005398101;XM_005398102;XM_005398103;XM_013521473;XM_013521474;XM_013521475 XP_005398157;XP_005398158;XP_005398159;XP_005398160;XP_013376927;XP_013376928;XP_013376929 MODEL 10227170 ncrna LOC106149655 uncharacterized LOC106149655 NW_004955405 42033279 42035671 - 106149655 AGCD01005576;GBDJ01254658;XR_001235966 MODEL 8871925 protein-coding Lrp6 LDL receptor related protein 6 ENCODES a protein that exhibits apolipoprotein binding (ortholog); coreceptor activity (ortholog); frizzled binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); axis elongation (ortholog); axis elongation involved in somitogenesis (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); autosomal dominant polycystic kidney disease (ortholog); coronary artery disease (ortholog); FOUND IN caveola (ortholog); cell surface (ortholog); cytoplasmic vesicle (ortholog) NW_004955413 9080901 9237644 - 102014436 AGCD01013892;AGCD01013893;AGCD01013894;AGCD01013895;AGCD01013896;AGCD01013897;AGCD01013898;AGCD01013899;AGCD01013900;GBCB01110976;XM_005378957 XP_005379014 MODEL 9052351 ncrna LOC102025165 uncharacterized LOC102025165 NW_004955532 1964848 1970998 + 102025165 AGCD01070208;GBBH01020719;XR_001232022;XR_264720 MODEL 8930748 protein-coding LOC102022685 putative olfactory receptor 10D4 NW_004955412 24755548 24756486 + 102022685 AGCD01013125;XM_013510992 XP_013366446 MODEL 8732623 protein-coding LOC102027167 uncharacterized LOC102027167 NW_004955470 4378118 4379167 - 102027167 AGCD01052730;XM_005400697 XP_005400754 MODEL 8789688 ncrna LOC102004272 uncharacterized LOC102004272 NW_004955415 5517401 5522758 + 102004272 AGCD01015995;GBDK01393200;XR_260271 MODEL 9010498 protein-coding LOC102016193 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase-like NW_004955435 22559143 22594210 + 102016193 AGCD01033513;GBCQ01030451;XM_005389081;XM_005389082;XM_005389083;XM_005389084 XP_005389138;XP_005389139;XP_005389140;XP_005389141 MODEL 8860011 pseudo LOC102007795 zinc finger FYVE domain-containing protein 1 pseudogene NW_004955429 6957166 6968391 + 102007795 AGCD01028571;AGCD01028572 MODEL 8861464 protein-coding Dhx37 DEAH-box helicase 37 ENCODES a protein that exhibits U3 snoRNA binding (ortholog); INVOLVED IN brain development (ortholog); positive regulation of male gonad development (ortholog); ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH Anorchia (ortholog); coloboma of optic nerve (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); nuclear membrane (ortholog); nucleolus (ortholog) NW_004955482 4733720 4754754 + 102008853 AGCD01057307;AGCD01057308;GBCE01154824;XM_005403001 XP_005403058 MODEL 8750188 protein-coding Mlana melan-A ASSOCIATED WITH chromosome 9p deletion syndrome (ortholog); contact dermatitis (ortholog); malignant mesothelioma (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog); melanosome (ortholog) NW_004955434 9877301 9893079 + 102005167 AGCD01032313;GBDJ01242841;XM_005388666 XP_005388723 MODEL 8948531 protein-coding LOC102003196 alanyl-tRNA editing protein Aarsd1-like NW_004955451 16762844 16769585 - 102003196 AGCD01043704;AGCD01043705;GBDJ01008508;XM_013519243 XP_013374697 MODEL 39131897 snrna U1 U1 spliceosomal RNA 8810910 ncrna LOC102022688 uncharacterized LOC102022688 NW_004955413 29141607 29153942 + 102022688 AGCD01014577;AGCD01014578;GBDJ01336894;XR_260122 MODEL 8855738 protein-coding LOC102025166 HLA class II histocompatibility antigen, DO alpha chain ENCODES a protein that exhibits MHC class II protein complex binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); negative regulation of antigen processing and presentation of peptide antigen via MHC class II (ortholog); ASSOCIATED WITH Familial Prostate Cancer (ortholog); liver disease (ortholog); occupational asthma (ortholog); FOUND IN MHC class II protein complex (ortholog) NW_004955437 1603395 1606800 - 102025166 AGCD01034219;GBDI01009349;XM_005389464;XM_005389465;XM_013516976;XM_013516977 XP_005389521;XP_005389522;XP_013372430;XP_013372431 MODEL 8735895 protein-coding Sav1 salvador family WW domain containing protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein serine/threonine kinase activator activity (ortholog); transcription regulator activator activity (ortholog); INVOLVED IN cardiac muscle cell proliferation (ortholog); epithelial cell proliferation (ortholog); hair follicle development (ortholog); ASSOCIATED WITH colonic disease (ortholog); hepatocellular carcinoma (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955409 12200721 12221520 + 102021738 AGCD01009541;GBCE01118906;GBDK01129269;XM_005376820 XP_005376877 MODEL 9040250 ncrna LOC102008904 uncharacterized LOC102008904 NW_004955580 1286792 1287412 - 102008904 AGCD01075652;GBDK01422065;XR_265090 MODEL 39132825 snrna U6 U6 spliceosomal RNA 8823749 protein-coding Bnc1 basonuclin zinc finger protein 1 ENCODES a protein that exhibits DNA-binding transcription activator activity (ortholog); rDNA binding (ortholog); INVOLVED IN chromosome organization (ortholog); epithelial cell proliferation (ortholog); positive regulation of epithelial cell proliferation (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955416 13428760 13440837 + 102003125 AGCD01017223;GBBH01128516;XM_005381464 XP_005381521 MODEL 9021381 protein-coding Dhx38 DEAH-box helicase 38 INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); fundus dystrophy (ortholog); retinitis pigmentosa (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog) NW_004955484 4752834 4770843 + 102018097 AGCD01058232;GBDF01223379;XM_005403530 XP_005403587 MODEL 10358230 ncrna LOC106147235 uncharacterized LOC106147235 NW_004955408 4964270 5029134 - 106147235 AGCD01008121;AGCD01008122;GBDF01306366;XR_001232006 MODEL 8903338 pseudo LOC102006273 methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial pseudogene NW_004955522 3958620 3960291 + 102006273 AGCD01068410 MODEL 8781804 protein-coding Ifng interferon gamma ENCODES a protein that exhibits cytokine activity (ortholog); INVOLVED IN adaptive immune response (ortholog); antigen processing and presentation (ortholog); apoptotic process (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-2 signaling pathway; interleukin-23 signaling pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); acquired immunodeficiency syndrome (ortholog); acute disseminated encephalomyelitis (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular region (ortholog); extracellular space (ortholog) NW_004955458 14643333 14648020 - 102028383 AGCD01047841;GBDJ01404961;XM_005397466 XP_005397523 MODEL 9008357 protein-coding Nfasc neurofascin ENCODES a protein that exhibits protein binding involved in heterotypic cell-cell adhesion (ortholog); protein domain specific binding (ortholog); INVOLVED IN axon guidance (ortholog); clustering of voltage-gated sodium channels (ortholog); myelination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); dendrite (ortholog) NW_004955406 40632971 40814930 + 102027485 AGCD01006665;AGCD01006666;AGCD01006667;GBBH01130303;XM_005375320;XM_005375321;XM_005375322;XM_005375323;XM_005375324;XM_005375325;XM_005375326;XM_005375329;XM_005375330;XM_005375331;XM_005375332;XM_005375333;XM_005375334;XM_005375335;XM_005375336;XM_005375337;XM_005375338;XM_005375339;XM_013522836;XM_013522870;XM_013522871 XP_005375377;XP_005375378;XP_005375379;XP_005375380;XP_005375381;XP_005375382;XP_005375383;XP_005375386;XP_005375387;XP_005375388;XP_005375389;XP_005375390;XP_005375391;XP_005375392;XP_005375393;XP_005375394;XP_005375395;XP_005375396;XP_013378290;XP_013378324;XP_013378325 MODEL 8708805 ncrna LOC102024125 uncharacterized LOC102024125 NW_004955422 26926363 26963457 - 102024125 AGCD01023305;AGCD01023306;AGCD01023307;GBDF01036002;XR_260925 MODEL 8768395 ncrna LOC102012454 uncharacterized LOC102012454 NW_004955426 21276896 21279599 - 102012454 AGCD01026583;GBDF01235356;XR_261214 MODEL 8742682 protein-coding Yeats2 YEATS domain containing 2 ENCODES a protein that exhibits histone binding (ortholog); histone reader activity (ortholog); modification-dependent protein binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of cell cycle (ortholog); regulation of cell division (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); breast ductal carcinoma (ortholog); congenital disorder of glycosylation Id (ortholog); FOUND IN ATAC complex (ortholog); mitotic spindle (ortholog); nucleus (ortholog) NW_004955420 23590636 23666689 - 102029974 AGCD01021249;AGCD01021250;AGCD01021251;GBDJ01062988;XM_005383359;XM_005383360;XM_005383361 XP_005383416;XP_005383417;XP_005383418 MODEL 9032813 protein-coding LOC102003410 DNA fragmentation factor subunit alpha-like NW_004955454 12312169 12320100 + 102003410 AGCD01045408;GBDF01264302;XM_005396061 XP_005396118 MODEL 9029306 ncrna LOC102004973 uncharacterized LOC102004973 NW_004955438 10817523 10828435 - 102004973 AGCD01035218;GBDF01251958;XR_261926 MODEL 8989280 protein-coding Vps8 VPS8 subunit of CORVET complex INVOLVED IN endosomal vesicle fusion (ortholog); ASSOCIATED WITH Contracture (ortholog); Currarino syndrome (ortholog); FOUND IN CORVET complex (ortholog); early endosome (ortholog) NW_004955420 22504076 22715094 - 102014904 AGCD01021203;AGCD01021204;AGCD01021205;AGCD01021206;AGCD01021207;AGCD01021208;AGCD01021209;AGCD01021210;GBDF01081001;XM_005383304;XM_013513539 XP_005383361;XP_013368993 MODEL 8941333 protein-coding LOC102028842 olfactory receptor 8D4 ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog) NW_004955412 24557873 24558811 + 102028842 AGCD01013117;XM_005378404 XP_005378461 MODEL 9032439 protein-coding Dhx40 DEAH-box helicase 40 ASSOCIATED WITH Joubert syndrome 1 (ortholog) NW_004955451 3456993 3500310 - 102014728 AGCD01043054;AGCD01043055;AGCD01043056;GBDK01430829;XM_005393985 XP_005394042 MODEL 9003116 pseudo LOC102016195 heterogeneous nuclear ribonucleoprotein C pseudogene NW_004955532 2895443 2896483 + 102016195 AGCD01070258 MODEL 8928005 protein-coding Knop1 lysine rich nucleolar protein 1 NW_004955442 3416904 3428274 - 102011700 AGCD01037506;GBDI01219490;XM_005391118;XM_005391119;XM_005391120 XP_005391175;XP_005391176;XP_005391177 MODEL 9026784 pseudo LOC102004974 ras-related protein Rab-5A pseudogene NW_004955438 15450726 15451498 + 102004974 AGCD01035367 MODEL 8755060 pseudo LOC102023090 protein N-terminal glutamine amidohydrolase pseudogene NW_004955449 3894076 3895493 + 102023090 AGCD01041870 MODEL 8823540 pseudo LOC102022691 protein kinase C iota type-like NW_004955471 4564598 4595032 + 102022691 AGCD01053080;AGCD01053081;AGCD01053082;AGCD01053083 MODEL 8710288 ncrna LOC102028843 uncharacterized LOC102028843 NW_004955466 11746935 11749866 - 102028843 AGCD01051100;GBDF01160432;XR_263313 MODEL 8812200 pseudo LOC102018424 interferon-related developmental regulator 1 pseudogene NW_004955431 7302705 7305140 - 102018424 AGCD01030084;XR_261460 MODEL 8835349 protein-coding Lats1 large tumor suppressor kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); nuclear estrogen receptor binding (ortholog); INVOLVED IN G2/M transition of mitotic cell cycle (ortholog); hippo signaling (ortholog); hormone-mediated signaling pathway (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Glandular and Epithelial Neoplasms (ortholog); high grade glioma (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); microtubule organizing center (ortholog) NW_004955439 11559655 11611287 + 102009881 AGCD01035913;AGCD01035914;AGCD01035915;AGCD01035916;GBDF01220461;XM_005390598;XM_005390599 XP_005390655;XP_005390656 MODEL 8896155 protein-coding Znf521 zinc finger protein 521 ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN neuron fate commitment (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); schizophrenia (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955402 13299670 13570188 - 102011924 AGCD01000407;AGCD01000408;AGCD01000409;AGCD01000410;GBDJ01238446;XM_005372725 XP_005372782 MODEL 8990784 pseudo LOC102008909 lupus La protein homolog pseudogene NW_004955402 62999061 63000015 - 102008909 AGCD01001651 MODEL 8930747 pseudo LOC102021766 ribosome biogenesis protein BRX1 homolog NW_004955418 2267162 2269572 + 102021766 AGCD01018753 MODEL 8768279 ncrna LOC102006276 uncharacterized LOC102006276 NW_004955435 16129063 16131676 + 102006276 AGCD01033295;GBCB01093390;XR_001234853;XR_261702 MODEL 8857547 pseudo LOC102008915 R-spondin-3 pseudogene NW_004955406 6122483 6124674 - 102008915 AGCD01005744 MODEL 9006878 protein-coding Erp27 endoplasmic reticulum protein 27 ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog) NW_004955413 11650920 11670127 - 102004050 AGCD01013966;GBCE01143801;XM_005379014;XM_013511584;XM_013511585 XP_005379071;XP_013367038;XP_013367039 MODEL 8856160 pseudo LOC102012457 charged multivesicular body protein 5-like NW_004955509 3240394 3241053 + 102012457 AGCD01066019 MODEL 8783313 protein-coding Usp48 ubiquitin specific peptidase 48 ENCODES a protein that exhibits deubiquitinase activity (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); amphetamine abuse (ortholog); autosomal dominant nonsyndromic deafness 85 (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955452 1959396 2031829 - 102003720 AGCD01043871;AGCD01043872;AGCD01043873;GBDK01141743;XM_013519602;XM_013519603 XP_013375056;XP_013375057 MODEL 8946181 protein-coding LOC102027168 olfactory receptor 51V1-like NW_004955414 21065698 21066642 - 102027168 AGCD01015405;XM_005380073 XP_005380130 MODEL 39131901 snrna U1 U1 spliceosomal RNA 8950179 protein-coding LOC102017199 olfactory receptor 6C4-like NW_004955458 3059124 3060059 + 102017199 AGCD01047269;XM_005397249 XP_005397306 MODEL 9068247 pseudo LOC102025167 THUMP domain-containing protein 3 pseudogene NW_004955534 1630167 1631771 - 102025167 AGCD01070504 MODEL 8934673 protein-coding Dhx57 DExH-box helicase 57 ASSOCIATED WITH Lynch syndrome (ortholog); Neurodevelopmental Disorders (ortholog); RASopathy (ortholog) NW_004955441 6479107 6541281 - 102013552 AGCD01036924;AGCD01036925;AGCD01036926;AGCD01036927;AGCD01036928;AGCD01036929;GBDF01113897;XM_005390897 XP_005390954 MODEL 39131922 snrna U1 U1 spliceosomal RNA 9014038 protein-coding Usp49 ubiquitin specific peptidase 49 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); histone binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); protein deubiquitination (ortholog); ASSOCIATED WITH infantile Refsum disease (ortholog); Zellweger syndrome (ortholog) NW_004955437 8187118 8237910 - 102017813 AGCD01034480;AGCD01034481;AGCD01034482;GBBH01045762;GBBH01067080;XM_013516779 XP_013372233 MODEL 8949712 pseudo LOC102026130 regulation of nuclear pre-mRNA domain-containing protein 1A-like NW_004955424 15797111 15823772 - 102026130 AGCD01024729;AGCD01024730 MODEL 8849935 protein-coding Nrsn1 neurensin 1 INVOLVED IN nervous system development (ortholog); ASSOCIATED WITH urinary bladder cancer (ortholog); FOUND IN cytoplasmic vesicle (ortholog); growth cone (ortholog); neuron projection (ortholog) NW_004955483 2795319 2812860 - 102012967 AGCD01057690;GBDI01085364;XM_005403376;XM_005403377 XP_005403433;XP_005403434 MODEL 8877474 protein-coding LOC102022692 natural cytotoxicity triggering receptor 3 ligand 1-like NW_004955414 32112006 32121958 + 102022692 AGCD01015773;AGCD01015774;GBDF01277677;XM_013512028 XP_013367482 MODEL 8995111 pseudo LOC102018426 coiled-coil domain-containing protein 152-like NW_004955432 5609953 5610904 + 102018426 AGCD01030791 MODEL 8891437 protein-coding Shkbp1 SH3KBP1 binding protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of epidermal growth factor receptor signaling pathway (ortholog); ASSOCIATED WITH Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog) NW_004955578 716818 730593 - 102011711 AGCD01075493;GBDK01090513;XM_005414043 XP_005414100 MODEL 39131923 snrna U1 U1 spliceosomal RNA 8794472 protein-coding LOC102026132 taste receptor type 2 member 1-like NW_004955504 6925464 6926360 - 102026132 AGCD01064931;XM_005407095 XP_005407152 MODEL 8977769 protein-coding Sec24a SEC24 homolog A, COPII coat complex component ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); COPII-coated vesicle cargo loading (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN COPII vesicle coat (ortholog) NW_004955408 5803438 5850879 + 102017201 AGCD01008156;AGCD01008157;AGCD01008158;GBBH01206501;GBCQ01127382;XM_013508549 XP_013364003 MODEL 8811858 ncrna LOC102003197 uncharacterized LOC102003197 NW_004955404 43067814 43068635 - 102003197 AGCD01004373;GBDF01288559;XR_259335 MODEL 39131924 snrna U1 U1 spliceosomal RNA 8976692 protein-coding Usp5 ubiquitin specific peptidase 5 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); deubiquitinase activity (ortholog); ubiquitin binding (ortholog); INVOLVED IN negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); negative regulation of T cell mediated immune response to tumor cell (ortholog); negative regulation of ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); developmental and epileptic encephalopathy 21 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955413 4451530 4466832 + 102004588 AGCD01013615;AGCD01013616;AGCD01013617;GBDF01004586;XM_005378833;XM_005378834;XM_005378836 XP_005378890;XP_005378891;XP_005378893 MODEL 8860731 protein-coding LOC102008917 keratin-associated protein 20-2-like NW_004955407 30198704 30198859 + 102008917 AGCD01007628;XM_005375646 XP_005375703 MODEL 8948804 pseudo LOC102016196 ras GTPase-activating protein-binding protein 1 pseudogene NW_004955437 18354771 18356910 - 102016196 AGCD01034790;XR_261892 MODEL 8846021 protein-coding Ropn1 rhophilin associated tail protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cilium organization (ortholog); flagellated sperm motility (ortholog); protein localization to cilium (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Familial Thoracic Aortic Aneurysm 7 (ortholog); FOUND IN cytoplasm (ortholog); sperm cytoplasmic droplet (ortholog); sperm principal piece (ortholog) NW_004955427 23104178 23140559 - 102025602 AGCD01027480;AGCD01027481;GBDF01008345;XM_013515030 XP_013370484 MODEL 8781628 protein-coding Knstrn kinetochore localized astrin (SPAG5) binding protein ENCODES a protein that exhibits microtubule plus-end binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cell migration (ortholog); cellular response to epidermal growth factor stimulus (ortholog); chromosome segregation (ortholog); ASSOCIATED WITH actinic keratosis (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN centriolar satellite (ortholog); kinetochore (ortholog); microtubule organizing center (ortholog) NW_004955416 7311483 7322272 + 102020443 AGCD01016973;GBDF01008449;XM_013512611;XM_013512612 XP_013368065;XP_013368066 MODEL 8728036 pseudo LOC102003198 methylmalonic aciduria and homocystinuria type D protein, mitochondrial pseudogene NW_004955404 48607830 48609942 - 102003198 AGCD01004506 MODEL 8807761 protein-coding LOC102022116 trace amine-associated receptor 7b-like NW_004955436 13096534 13097565 - 102022116 AGCD01033854;XM_005389211 XP_005389268 MODEL 8795904 protein-coding Saxo1 stabilizer of axonemal microtubules 1 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN cellular response to cold (ortholog); cold acclimation (ortholog); positive regulation of cilium assembly (ortholog); FOUND IN axonemal microtubule (ortholog); centriole (ortholog); ciliary basal body (ortholog) NW_004955434 21414937 21454901 - 102024607 AGCD01032628;GBDF01003678;XM_005388724;XM_013516288 XP_005388781;XP_013371742 MODEL 39131415 protein-coding TAS2R38 taste 2 receptor member 38 8990403 protein-coding LOC102024723 isoaspartyl peptidase/L-asparaginase-like NW_004955545 2666859 2668211 - 102024723 AGCD01071915;XM_013508201 XP_013363655 MODEL 8744946 ncrna LOC102016201 uncharacterized LOC102016201 NW_004955441 13879512 13884570 - 102016201 AGCD01037163;GBCB01091731;XR_262077 MODEL 9012915 protein-coding Lrp8 LDL receptor related protein 8 ENCODES a protein that exhibits amyloid-beta binding (ortholog); apolipoprotein binding (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN ammon gyrus development (ortholog); cellular response to cholesterol (ortholog); cellular response to growth factor stimulus (ortholog); PARTICIPATES IN altered Reelin signaling pathway; Reelin signaling pathway; ASSOCIATED WITH dementia (ortholog); myocardial infarction (ortholog); Nerve Degeneration (ortholog); FOUND IN axon (ortholog); caveola (ortholog); cell surface (ortholog) NW_004955464 5837002 5912178 + 102025556 AGCD01050015;GBDF01193162;GBDI01325997;XM_013521674;XM_013521675;XM_013521676;XM_013521677;XM_013521678;XM_013521679;XM_013521680;XM_013521681;XM_013521682;XM_013521683;XM_013521684;XM_013521685;XM_013521686 XP_013377128;XP_013377129;XP_013377130;XP_013377131;XP_013377132;XP_013377133;XP_013377134;XP_013377135;XP_013377136;XP_013377137;XP_013377138;XP_013377139;XP_013377140 MODEL 9019225 ncrna LOC102003199 uncharacterized LOC102003199 NW_004955405 11281717 11443213 - 102003199 AGCD01004830;AGCD01004831;AGCD01004832;AGCD01004833;GBDJ01324103;XR_001235325;XR_001235327;XR_001235329 MODEL 8732875 ncrna LOC102007798 uncharacterized LOC102007798 NW_004955430 5482042 5492358 + 102007798 AGCD01029262;XR_261417 MODEL 8756996 protein-coding Slc17a8 solute carrier family 17 member 8 ENCODES a protein that exhibits chloride channel activity (ortholog); L-glutamate uniporter activity (ortholog); sodium:phosphate symporter activity (ortholog); INVOLVED IN cochlea development (ortholog); L-glutamate import (ortholog); L-glutamate transmembrane transport (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness 25 (ortholog); autosomal recessive nonsyndromic deafness 9 (ortholog); cochlear disease (ortholog); FOUND IN apical dendrite (ortholog); axon terminus (ortholog); basal dendrite (ortholog) NW_004955405 36063688 36115312 + 102021302 AGCD01005409;XM_005374531;XM_005374532 XP_005374588;XP_005374589 MODEL 39132542 snrna U6 U6 spliceosomal RNA 8869105 pseudo LOC102022694 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955415 31723190 31724087 + 102022694 AGCD01016692;XR_260340 MODEL 9010434 pseudo LOC102012837 glycerophosphocholine phosphodiesterase GPCPD1 pseudogene NW_004955410 7980036 7985561 - 102012837 AGCD01010730 MODEL 8738572 protein-coding Vps9d1 VPS9 domain containing 1 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH autosomal recessive chronic granulomatous disease 4 (ortholog); Fanconi anemia (ortholog); Fanconi anemia complementation group A (ortholog) NW_004955541 3248384 3258856 - 102016199 AGCD01071440;GBCE01153510;XM_005411059 XP_005411116 MODEL 8984416 protein-coding LOC102006285 vegetative cell wall protein gp1-like NW_004955546 1258104 1261505 - 102006285 AGCD01072044;GBDF01260251;XM_005411765;XM_005411766 XP_005411822;XP_005411823 MODEL 8720069 pseudo LOC102016205 chondroitin sulfate N-acetylgalactosaminyltransferase 2-like NW_004955442 17178781 17201854 - 102016205 AGCD01037944;AGCD01037945;AGCD01037946 MODEL 9023746 ncrna LOC102023093 uncharacterized LOC102023093 NW_004955402 46979980 47001260 + 102023093 AGCD01001170;GBDF01162629;XR_259095;XR_259096 MODEL 8833181 pseudo LOC102017200 17-beta-hydroxysteroid dehydrogenase type 6-like NW_004955458 4635072 4639694 - 102017200 AGCD01047423 MODEL 8779096 pseudo LOC102007433 olfactory receptor 2T10-like NW_004955418 29702702 29708070 - 102007433 AGCD01019480 MODEL 8980668 pseudo LOC102006293 protein kinase C iota type pseudogene NW_004955443 17422253 17426023 + 102006293 AGCD01038579 MODEL 10079561 ncrna LOC106147236 uncharacterized LOC106147236 NW_004955408 13354539 13370120 + 106147236 AGCD01008354;AGCD01008355;GBDF01290466;XR_001232011 MODEL 9020238 ncrna LOC102021768 uncharacterized LOC102021768 NW_004955484 9693663 9696787 + 102021768 AGCD01058425;GBDF01223320;XR_263900 MODEL 8989824 protein-coding LOC102004273 translation initiation factor IF-2 NW_004955474 427580 429704 + 102004273 AGCD01054218;GBBH01209537;XM_005401303 XP_005401360 MODEL 8767658 pseudo LOC102007434 eukaryotic translation initiation factor 1 pseudogene NW_004955419 15211183 15211577 - 102007434 AGCD01020066 MODEL 8864262 protein-coding Gprc5d G protein-coupled receptor class C group 5 member D ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955413 9805848 9815616 - 102020899 AGCD01013913;XM_005378976;XM_005378977 XP_005379033;XP_005379034 MODEL 8986140 protein-coding Dhx58 DExH-box helicase 58 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); double-stranded RNA binding (ortholog); RNA helicase activity (ortholog); INVOLVED IN cytoplasmic pattern recognition receptor signaling pathway (ortholog); negative regulation of innate immune response (ortholog); negative regulation of MDA-5 signaling pathway (ortholog); FOUND IN cytoplasm (ortholog) NW_004955451 16186263 16191928 - 102012597 AGCD01043658;GBBH01137215;XM_013519384;XM_013519386;XM_013519387 XP_013374838;XP_013374840;XP_013374841 MODEL 8796675 protein-coding Spmip3 sperm microtubule inner protein 3 ASSOCIATED WITH developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog); Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 2 (ortholog) NW_004955406 7651785 7682027 + 102005664 AGCD01005774;GBDF01049394;XM_005374774;XM_013520358 XP_005374831;XP_013375812 MODEL 8893254 protein-coding Nrsn2 neurensin 2 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasmic vesicle (ortholog); neuronal cell body (ortholog); plasma membrane (ortholog) NW_004955597 236247 241754 + 102020861 AGCD01076548;GBDF01128357;XM_005414719 XP_005414776 MODEL 8739809 protein-coding Tnks1bp1 tankyrase 1 binding protein 1 ENCODES a protein that exhibits ankyrin repeat binding (ortholog); enzyme binding (ortholog); protein serine/threonine kinase activator activity (ortholog); INVOLVED IN cellular response to ionizing radiation (ortholog); double-strand break repair (ortholog); ASSOCIATED WITH intellectual disability (ortholog); myoepithelioma (ortholog); FOUND IN adherens junction (ortholog); CCR4-NOT complex (ortholog); cytoplasm (ortholog) NW_004955511 2359581 2378389 - 102029427 AGCD01066399;AGCD01066400;GBCE01031282;XM_013506472;XM_013506473 XP_013361926;XP_013361927 MODEL 8750803 protein-coding Saxo2 stabilizer of axonemal microtubules 2 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN nucleus (ortholog) NW_004955416 12789683 12811159 + 102027637 AGCD01017212;AGCD01017213;GBDF01086244;XM_005381455;XM_005381456;XM_005381457;XM_005381458 XP_005381512;XP_005381513;XP_005381514;XP_005381515 MODEL 8737995 pseudo LOC102007436 eukaryotic peptide chain release factor subunit 1 pseudogene NW_004955484 8653605 8660088 + 102007436 AGCD01058393 MODEL 8824931 ncrna LOC102020517 uncharacterized LOC102020517 NW_004955403 47004641 47045570 + 102020517 AGCD01002873;AGCD01002874;GBDJ01189358;XR_001233928;XR_001233929;XR_001233930 MODEL 39131925 snrna U1 U1 spliceosomal RNA 39132827 snrna U6 U6 spliceosomal RNA 8756539 protein-coding Spmip4 sperm microtubule inner protein 4 ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN centrosome (ortholog) NW_004955410 27105104 27138654 - 102024536 AGCD01011209;GBCQ01155117;XM_005377430;XM_005377431 XP_005377487;XP_005377488 MODEL 9035046 protein-coding Sec24b SEC24 homolog B, COPII coat complex component ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN aorta morphogenesis (ortholog); auditory receptor cell morphogenesis (ortholog); auditory receptor cell stereocilium organization (ortholog); FOUND IN COPII vesicle coat (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); cytosol (ortholog) NW_004955496 666728 732829 - 102026885 AGCD01062237;AGCD01062238;AGCD01062239;AGCD01062240;AGCD01062241;GBBH01127061;GBCE01024521;XM_013505418 XP_013360872 MODEL 8985971 protein-coding LOC102028845 formin-like protein 6 NW_004955467 74598 87270 - 102028845 AGCD01051208;GBDF01221170;XM_013522044;XM_013522045 XP_013377498;XP_013377499 MODEL 39131926 snrna U1 U1 spliceosomal RNA 8710322 pseudo LOC102003411 nuclease-sensitive element-binding protein 1 pseudogene NW_004955454 11898396 11903297 + 102003411 AGCD01045401;AGCD01045402;XR_262803 MODEL 8959710 protein-coding Ropn1l rhophilin associated tail protein 1 like ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cilium movement (ortholog); flagellated sperm motility (ortholog); regulation of protein phosphorylation (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955426 285053 296913 + 102004501 AGCD01025999;GBDF01008841;XM_005386118 XP_005386175 MODEL 8915003 pseudo LOC102017203 granzyme H-like NW_004955409 35681707 35731439 + 102017203 AGCD01010428;AGCD01010429;AGCD01010430;AGCD01010431;AGCD01010432 MODEL 9007953 protein-coding Mlc1 modulator of VRAC current 1 ENCODES a protein that exhibits identical protein binding (ortholog); monoatomic ion channel activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN caveolin-mediated endocytosis (ortholog); cellular response to cholesterol (ortholog); monoatomic ion transmembrane transport (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); autism spectrum disorder (ortholog); cerebellar ataxia (ortholog); FOUND IN apical plasma membrane (ortholog); astrocyte end-foot (ortholog); basolateral plasma membrane (ortholog) NW_004955413 33120426 33142149 - 102019260 AGCD01014656;GBDK01200764;XM_005379535;XM_005379537;XM_013511674;XM_013511675 XP_005379592;XP_005379594;XP_013367128;XP_013367129 MODEL 8946061 protein-coding Spmip5 sperm microtubule inner protein 5 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH substance-related disorder (ortholog); syndromic microphthalmia 11 (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955431 21454858 21463068 - 102024150 AGCD01030496;GBDF01044869;XM_005387855;XM_013515844 XP_005387912;XP_013371298 MODEL 8776768 ncrna LOC102024724 uncharacterized LOC102024724 NW_004955444 6874976 6878006 + 102024724 AGCD01038876;GBDF01121326;XR_262248 MODEL 8860735 protein-coding Tfpi2 tissue factor pathway inhibitor 2 INVOLVED IN cellular response to fluid shear stress (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Breast Neoplasms (ortholog); Carotid Artery Injuries (ortholog) NW_004955432 10635626 10641345 - 102010188 AGCD01030936;GBDK01006832;XM_005415328;XM_013516032 XP_005415385;XP_013371486 MODEL 39132543 snrna U6 U6 spliceosomal RNA 9054170 protein-coding Erp29 endoplasmic reticulum protein 29 ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN negative regulation of gene expression (ortholog); negative regulation of protein secretion (ortholog); positive regulation of gene expression (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH hepatocellular carcinoma (ortholog); lung adenocarcinoma (ortholog); Neoplasm Metastasis (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum (ortholog); smooth endoplasmic reticulum (ortholog) NW_004955482 8572227 8579589 + 102006663 AGCD01057536;AGCD01057537;GBDF01045015;XM_005403185;XM_005403186 XP_005403242;XP_005403243 MODEL 8737996 ncrna LOC102007799 uncharacterized LOC102007799 NW_004955431 12189719 12210492 + 102007799 AGCD01030254;GBDF01124095;XR_261466;XR_261467 MODEL 9041553 ncrna LOC102003205 uncharacterized LOC102003205 NW_004955454 12305249 12309122 - 102003205 AGCD01045408;XR_262790 MODEL 8798141 protein-coding Dhx8 DEAH-box helicase 8 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH CAKUT (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955451 16941422 16963690 + 102004549 AGCD01043713;AGCD01043714;GBDF01047527;XM_005394503 XP_005394560 MODEL 9065210 protein-coding Slc17a9 solute carrier family 17 member 9 ENCODES a protein that exhibits ADP transmembrane transporter activity (ortholog); ATP transmembrane transporter activity (ortholog); guanine nucleotide transmembrane transporter activity (ortholog); INVOLVED IN ADP transport (ortholog); ATP export (ortholog); ATP transport (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN chromaffin granule membrane (ortholog); lysosomal membrane (ortholog); mucin granule (ortholog) NW_004955528 1124430 1139476 - 102019730 AGCD01069552;GBDK01265855;XM_005409998;XM_005410000;XM_005410001 XP_005410055;XP_005410057;XP_005410058 MODEL 8971750 pseudo LOC102012841 LYR motif-containing protein 1 pseudogene NW_004955466 2598628 2602417 - 102012841 AGCD01050748 MODEL 8847120 ncrna LOC102008918 uncharacterized LOC102008918 NW_004955408 4765453 4769584 - 102008918 AGCD01008118;GBDF01188494;XR_259660 MODEL 8887112 protein-coding Saxo4 stabilizer of axonemal microtubules 4 ENCODES a protein that exhibits phosphatase binding (ortholog); INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH Hereditary Paraganglioma-Pheochromocytoma Syndromes (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955511 6105063 6116809 - 102012460 AGCD01066597;GBDK01219508;XM_005408146;XM_013506470 XP_005408203;XP_013361924 MODEL 8737186 ncrna LOC102007802 uncharacterized LOC102007802 NW_004955433 6683298 6685871 - 102007802 AGCD01031546;GBDF01076212;XR_261563 MODEL 8813799 pseudo LOC102020519 histidine triad nucleotide-binding protein 2, mitochondrial pseudogene NW_004955403 42797974 42798458 + 102020519 AGCD01002761 MODEL 8714944 ncrna LOC102023797 uncharacterized LOC102023797 NW_004955471 5896019 5897182 + 102023797 AGCD01053115;GBDF01054811;XR_263526 MODEL 8843888 pseudo LOC102012843 T-complex protein 1 subunit alpha pseudogene NW_004955466 3144704 3150696 - 102012843 AGCD01050787 MODEL 8903459 protein-coding Lats2 large tumor suppressor kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); G1/S transition of mitotic cell cycle (ortholog); hippo signaling (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); malignant astrocytoma (ortholog); peritoneal mesothelioma (ortholog); FOUND IN centriolar satellite (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955497 1711882 1768177 - 102010282 AGCD01062469;AGCD01062470;AGCD01062471;AGCD01062472;GBCE01135541;GBCE01135542;XM_013505466 XP_013360920 MODEL 8808458 protein-coding Dhx9 DExH-box helicase 9 ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); 3'-5' DNA/RNA helicase activity (ortholog); 3'-5' RNA helicase activity (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); cellular response to exogenous dsRNA (ortholog); cellular response to heat (ortholog); PARTICIPATES IN aldosterone signaling pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autosomal dominant intellectual developmental disorder 75 (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); FOUND IN actin cytoskeleton (ortholog); centrosome (ortholog); CRD-mediated mRNA stability complex (ortholog) NW_004955406 21697813 21743551 + 102021089 AGCD01006141;AGCD01006142;GBDK01082941;XM_005375015;XM_005375016 XP_005375072;XP_005375073 MODEL 8928878 protein-coding Slc18a1 solute carrier family 18 member A1 ENCODES a protein that exhibits enzyme binding (ortholog); monoamine:proton antiporter activity (ortholog); serotonin:sodium:chloride symporter activity (ortholog); INVOLVED IN cellular response to lithium ion (ortholog); dopamine uptake (ortholog); negative regulation of serotonin uptake (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); hereditary spastic paraplegia 53 (ortholog); schizophrenia (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); secretory granule membrane (ortholog); synapse (ortholog) NW_004955403 43821978 43848403 - 102024521 AGCD01002789;GBDJ01219652;XM_005373626;XM_013513636;XM_013513637 XP_005373683;XP_013369090;XP_013369091 MODEL 8878475 ncrna LOC102004276 uncharacterized LOC102004276 NW_004955476 10952695 10958599 + 102004276 AGCD01055432;AGCD01055433;GBDF01093785;XR_001230793;XR_263644 MODEL 9006711 pseudo LOC102027169 mitogen-activated protein kinase 6 pseudogene NW_004955470 5185407 5190353 + 102027169 AGCD01052747 MODEL 9024939 protein-coding LOC102012844 polycystic kidney disease protein 1-like 2 NW_004955413 408570 412526 + 102012844 AGCD01013464;GBDJ01203527;XM_005378678;XM_013511472 XP_005378735;XP_013366926 MODEL 9046476 protein-coding Lrpap1 LDL receptor related protein associated protein 1 ENCODES a protein that exhibits lipase binding (ortholog); low-density lipoprotein particle receptor binding (ortholog); receptor antagonist activity (ortholog); INVOLVED IN amyloid-beta clearance by transcytosis (ortholog); negative regulation of amyloid-beta clearance (ortholog); negative regulation of receptor internalization (ortholog); PARTICIPATES IN Hedgehog signaling pathway; Reelin signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); dementia (ortholog); Ellis-Van Creveld syndrome (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955514 2195228 2208258 - 102004961 AGCD01067075;GBCE01007107;XM_005408765 XP_005408822 MODEL 8946101 ncrna LOC102025169 uncharacterized LOC102025169 NW_004955537 234120 234410 + 102025169 AGCD01070855;GBDI01045663;XR_264769 MODEL 8834957 protein-coding Bnc2 basonuclin zinc finger protein 2 ENCODES a protein that exhibits DNA binding (ortholog); rDNA binding (ortholog); INVOLVED IN endochondral bone growth (ortholog); mesenchyme development (ortholog); regulation of apoptotic process (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); basal cell carcinoma (ortholog); cleft palate (ortholog); FOUND IN chromatin (ortholog); fibrillar center (ortholog); nuclear body (ortholog) NW_004955434 19156746 19568983 - 102021793 AGCD01032583;AGCD01032584;AGCD01032585;AGCD01032586;AGCD01032587;AGCD01032588;AGCD01032589;GBDJ01273240;XM_005388715;XM_005388716;XM_005388717;XM_005388718;XM_005388719;XM_013516364;XM_013516365 XP_005388772;XP_005388773;XP_005388774;XP_005388775;XP_005388776;XP_013371818;XP_013371819 MODEL 8724043 protein-coding LOC102016208 vomeronasal type-1 receptor 4-like NW_004955569 1032355 1033407 + 102016208 AGCD01074632;XM_005413517 XP_005413574 MODEL 39132544 snrna U6 U6 spliceosomal RNA 10386008 ncrna LOC106149220 uncharacterized LOC106149220 NW_004955440 11150592 11168661 + 106149220 AGCD01036403;XR_001235249 MODEL 9023046 pseudo LOC102023096 zinc finger CCCH domain-containing protein 15 pseudogene NW_004955402 18254821 18256134 - 102023096 AGCD01000528 MODEL 8929971 pseudo LOC102009294 volume-regulated anion channel subunit LRRC8D-like NW_004955497 504156 510636 - 102009294 AGCD01062420;AGCD01062421 MODEL 8779191 protein-coding Znf524 zinc finger protein 524 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog) NW_004955567 742641 743712 - 102011597 AGCD01074429;GBCQ01094946;XM_005413285 XP_005413342 MODEL 8810339 pseudo LOC102003206 cysteine and histidine-rich domain-containing protein 1-like NW_004955407 13581947 13582930 - 102003206 AGCD01007151 MODEL 8843480 protein-coding Yeats4 YEATS domain containing 4 ENCODES a protein that exhibits histone H3K18ac reader activity (ortholog); histone H3K27ac reader activity (ortholog); INVOLVED IN positive regulation of double-strand break repair via homologous recombination (ortholog); regulation of cell cycle (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH high grade glioma (ortholog); liposarcoma (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955405 9677701 9706541 + 102024641 AGCD01004787;AGCD01004788;AGCD01004789;AGCD01004790;GBDI01290622;XM_005374299 XP_005374356 MODEL 8871437 ncrna LOC102018430 uncharacterized LOC102018430 NW_004955434 6923205 7013018 - 102018430 AGCD01032221;AGCD01032222;AGCD01032223;GBBH01025474;XR_001234808;XR_261613;XR_261615 MODEL 8742749 protein-coding LOC102006296 zinc finger protein 709-like NW_004955569 1353747 1371972 - 102006296 AGCD01074650;AGCD01074651;GBCE01006118;XM_005413500 XP_005413557 MODEL 8957270 protein-coding Sec24c SEC24 homolog C, COPII coat complex component ENCODES a protein that exhibits SNARE binding (ortholog); zinc ion binding (ortholog); INVOLVED IN COPII-coated vesicle cargo loading (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH microcephaly (ortholog); FOUND IN COPII vesicle coat (ortholog); cytosol (ortholog) NW_004955437 18132969 18161167 - 102013540 AGCD01034777;GBCE01076831;XM_005389963;XM_005389964;XM_005389965 XP_005390020;XP_005390021;XP_005390022 MODEL 8845801 pseudo LOC102017213 ubiquitin-conjugating enzyme E2 L3-like NW_004955413 9498850 9499337 + 102017213 AGCD01013907 MODEL 8771331 ncrna LOC102003412 uncharacterized LOC102003412 NW_004955407 34652125 34732104 - 102003412 AGCD01007724;AGCD01007725;GBDF01014151;XR_001231192;XR_259607 MODEL 8896070 pseudo LOC102026133 electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like NW_004955505 2313143 2314323 + 102026133 AGCD01064992 MODEL 8943440 protein-coding LOC102023098 vomeronasal type-1 receptor 2-like NW_004955604 464901 465824 + 102023098 AGCD01076908;XM_005414885 XP_005414942 MODEL 8915617 pseudo LOC102018433 60S ribosomal protein L23a pseudogene NW_004955527 2330626 2331113 + 102018433 AGCD01069431 MODEL 9050708 protein-coding Usp50 ubiquitin specific peptidase 50 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); ubiquitin-like protein peptidase activity (ortholog); INVOLVED IN nuclear speck organization (ortholog); positive regulation of interleukin-1 beta production (ortholog); positive regulation of interleukin-18 production (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); hereditary spastic paraplegia (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955409 3788723 3838077 + 102023444 AGCD01009261;AGCD01009262;AGCD01009263;GBDF01009996;XM_005377144 XP_005377201 MODEL 8938054 protein-coding Mlec malectin ENCODES a protein that exhibits enzyme binding (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN oligosaccharyltransferase complex (ortholog) NW_004955455 10969859 10983977 - 102006980 AGCD01045971;AGCD01045972;GBCE01052538;XM_005396493;XM_013520361 XP_005396550;XP_013375815 MODEL 8960134 protein-coding Ifngr1 interferon gamma receptor 1 ENCODES a protein that exhibits type II interferon receptor activity (ortholog); INVOLVED IN astrocyte activation (ortholog); defense response to virus (ortholog); microglial cell activation (ortholog); PARTICIPATES IN type II interferon signaling pathway; ASSOCIATED WITH arteriosclerosis (ortholog); asthma (ortholog); Eczema (ortholog); FOUND IN dendrite (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955436 22183318 22199013 + 102019637 AGCD01034087;GBCE01075143;XM_005389280 XP_005389337 MODEL 8831512 protein-coding LOC102017219 ankyrin repeat domain-containing protein 49 NW_004955414 98384 104654 - 102017219 AGCD01014701;GBDK01229818;XM_005379677 XP_005379734 MODEL 8994313 pseudo LOC102018434 60S ribosomal protein L9 pseudogene NW_004955436 21412782 21413746 + 102018434 AGCD01034053 MODEL 9040632 pseudo LOC102022120 THAP domain-containing protein 5-like NW_004955536 1401488 1402761 + 102022120 AGCD01070756 MODEL 8986160 protein-coding LOC102012845 NACHT, LRR and PYD domains-containing protein 1-like NW_004955467 10861527 10905757 - 102012845 AGCD01051587;GBCE01022349;XM_013522159;XM_013522160 XP_013377613;XP_013377614 MODEL 8816217 protein-coding Kntc1 kinetochore associated 1 INVOLVED IN mitotic spindle assembly checkpoint signaling (ortholog); ASSOCIATED WITH prostate cancer (ortholog); short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN actin cytoskeleton (ortholog); cytosol (ortholog); kinetochore microtubule (ortholog) NW_004955482 6040964 6119814 - 102030079 AGCD01057370;AGCD01057371;AGCD01057372;AGCD01057373;AGCD01057374;GBDF01123416;XM_005403078;XM_005403079;XM_013503705 XP_005403135;XP_005403136;XP_013359159 MODEL 8826481 protein-coding Tas2r4 taste 2 receptor member 4 ENCODES a protein that exhibits bitter taste receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); respiratory gaseous exchange by respiratory system (ortholog); ASSOCIATED WITH Hereditary Pancreatitis (ortholog); RASopathy (ortholog); Sengers syndrome (ortholog) NW_004955494 1790395 1791294 - 102006361 AGCD01061423;XM_005405532 XP_005405589 MODEL 8989104 ncrna LOC102008922 uncharacterized LOC102008922 NW_004955460 11145349 11152507 + 102008922 AGCD01048629;AGCD01048630;GBCQ01032294;XR_001236540 MODEL 8787493 protein-coding Bnip1 BCL2 interacting protein 1 ENCODES a protein that exhibits calcium-induced calcium release activity (ortholog); SNAP receptor activity (ortholog); INVOLVED IN apoptotic process (ortholog); apoptotic process in response to mitochondrial fragmentation (ortholog); endoplasmic reticulum membrane fusion (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; ASSOCIATED WITH atrial heart septal defect 7 (ortholog); Atrial Septal Defect with Atrioventricular Conduction Defects (ortholog); Down syndrome (ortholog); FOUND IN COPI-coated vesicle (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955408 25774305 25788802 + 102029267 AGCD01008652;GBDF01126859;XM_005376349 XP_005376406 MODEL 8749075 ncrna LOC102016210 uncharacterized LOC102016210 NW_004955402 1193524 1194521 + 102016210 AGCD01000051;GBBH01053054;XR_001234142 MODEL 39131927 snrna U1 U1 spliceosomal RNA 8975013 ncrna LOC102022697 uncharacterized LOC102022697 NW_004955416 22742238 22782976 - 102022697 AGCD01017535;AGCD01017536;GBDF01075292;XR_260411 MODEL 8924326 protein-coding Znf526 zinc finger protein 526 ASSOCIATED WITH Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog) NW_004955555 678735 682967 - 102028473 AGCD01073043;GBDK01395167;XM_013508753 XP_013364207 MODEL 8820705 protein-coding Ppp5c protein phosphatase 5 catalytic subunit ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); G-protein alpha-subunit binding (ortholog); INVOLVED IN cellular response to cadmium ion (ortholog); cellular response to hydrogen peroxide (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; Rho/Rac/Cdc42 mediated signaling pathway; ASSOCIATED WITH Left Ventricular Hypertrophy (ortholog); FOUND IN cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); neuronal cell body (ortholog) NW_004955574 523044 545461 + 102025062 AGCD01075110;GBDI01083137;XM_005413826 XP_005413883 MODEL 8963997 protein-coding Gprc6a G protein-coupled receptor class C group 6 member A ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); positive regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); regulation of testosterone biosynthetic process (ortholog); ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); disorder of sexual development (ortholog); FOUND IN plasma membrane (ortholog) NW_004955436 137809 159481 - 102006948 AGCD01033535;XM_005389118 XP_005389175 MODEL 8757869 protein-coding Nrxn1 neurexin 1 ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); calcium channel regulator activity (ortholog); calcium ion binding (ortholog); INVOLVED IN adult behavior (ortholog); AMPA selective glutamate receptor signaling pathway (ortholog); calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); CHROMOSOME 2p16.3 DELETION SYNDROME (ortholog); FOUND IN axonal growth cone (ortholog); cell surface (ortholog); endocytic vesicle (ortholog) NW_004955441 16230977 17178003 - 102026572 AGCD01037268;AGCD01037269;AGCD01037270;AGCD01037271;AGCD01037272;AGCD01037273;AGCD01037274;AGCD01037275;AGCD01037276;AGCD01037277;AGCD01037278;AGCD01037279;AGCD01037280;AGCD01037281;AGCD01037282;AGCD01037283;GBDK01379530;XM_005391011;XM_005391018;XM_013517618;XM_013517619;XM_013517620;XM_013517621;XM_013517622;XM_013517623 XP_005391068;XP_005391075;XP_013373072;XP_013373073;XP_013373074;XP_013373075;XP_013373076;XP_013373077 MODEL 8931181 protein-coding Lax1 lymphocyte transmembrane adaptor 1 ENCODES a protein that exhibits protein kinase binding (ortholog); SH2 domain binding (ortholog); INVOLVED IN antigen receptor-mediated signaling pathway (ortholog); B cell activation (ortholog); immune response (ortholog); ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); membrane (ortholog) NW_004955406 39656549 39667448 + 102013795 AGCD01006632;GBDI01290363;XM_005375271;XM_005375272;XM_005375273;XM_005375274;XM_005375275;XM_013522643 XP_005375328;XP_005375329;XP_005375330;XP_005375331;XP_005375332;XP_013378097 MODEL 10290049 protein-coding LOC106149656 uncharacterized LOC106149656 NW_004955451 4444766 4446048 + 106149656 AGCD01043119;GBDF01010566;GBDF01010567;XM_013519226 XP_013374680 MODEL 8988673 protein-coding LOC102024728 leukocyte immunoglobulin-like receptor subfamily A member 6 NW_004955567 1241159 1251299 - 102024728 AGCD01074465;XM_013509226 XP_013364680 MODEL 8981366 protein-coding Spmip6 sperm microtubule inner protein 6 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); INVOLVED IN flagellated sperm motility (ortholog); protein-containing complex assembly (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); distal arthrogryposis type 1A (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955472 1718474 1733980 + 102028955 AGCD01053409;AGCD01053410;GBDF01007585;XM_005401076;XM_005401077;XM_005401078;XM_005401079;XM_005401080;XM_013522971 XP_005401133;XP_005401134;XP_005401135;XP_005401136;XP_005401137;XP_013378425 MODEL 8877928 protein-coding Bnip2 BCL2 interacting protein 2 INVOLVED IN blastocyst development (ortholog); centrosome cycle (ortholog); positive regulation of MAPK cascade (ortholog); PARTICIPATES IN p38 MAPK signaling pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN centriole (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955450 15157411 15180069 + 102011383 AGCD01042782;AGCD01042783;GBDF01002691;XM_005393826;XM_005393827 XP_005393883;XP_005393884 MODEL 8812330 pseudo LOC102023099 olfactory receptor 7A17-like NW_004955626 111700 112600 + 102023099 AGCD01077468 MODEL 39132830 snrna U6 U6 spliceosomal RNA 8806302 protein-coding Lrpprc leucine rich pentatricopeptide repeat containing ENCODES a protein that exhibits actin filament binding (ortholog); beta-tubulin binding (ortholog); RNA binding (ortholog); INVOLVED IN mitochondrial RNA catabolic process (ortholog); negative regulation of mitochondrial RNA catabolic process (ortholog); regulation of mitochondrial translation (ortholog); PARTICIPATES IN CRM1 export pathway; ASSOCIATED WITH epilepsy (ortholog); French Canadian Leigh disease (ortholog); genetic disease (ortholog); FOUND IN condensed nuclear chromosome (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog) NW_004955441 11012910 11116965 - 102029009 AGCD01037100;GBCB01022369;XM_013517542 XP_013372996 MODEL 8725807 pseudo LOC102025172 vasculin pseudogene NW_004955540 1909030 1917626 + 102025172 AGCD01071308;XR_264822 MODEL 8731175 protein-coding Bnip3 BCL2 interacting protein 3 ENCODES a protein that exhibits endoplasmic reticulum-autophagosome adaptor activity (ortholog); GTPase binding (ortholog); identical protein binding (ortholog); INVOLVED IN autophagic cell death (ortholog); brown fat cell differentiation (ortholog); cardiac muscle cell apoptotic process (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; intrinsic apoptotic pathway; mitochondrial autophagy pathway; ASSOCIATED WITH Chronic Intermittent Hypoxia (ortholog); chronic obstructive pulmonary disease (ortholog); congestive heart failure (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955477 9621812 9630406 - 102022813 AGCD01055677;GBCQ01005103;GBDI01001865;XM_005402035 XP_005402092 MODEL 8736686 protein-coding Spmip7 sperm microtubule inner protein 7 INVOLVED IN spermatogenesis (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog) NW_004955456 3845875 3885908 - 102005226 AGCD01046285;AGCD01046286;GBDK01163453;XM_005396622;XM_005396623 XP_005396679;XP_005396680 MODEL 8904022 protein-coding Shld1 shieldin complex subunit 1 INVOLVED IN negative regulation of double-strand break repair via homologous recombination (ortholog); positive regulation of double-strand break repair via nonhomologous end joining (ortholog); positive regulation of isotype switching (ortholog); ASSOCIATED WITH Huntington's disease-like 1 (ortholog); Inosine Triphosphatase Deficiency (ortholog); pantothenate kinase-associated neurodegeneration (ortholog); FOUND IN chromosome (ortholog); site of double-strand break (ortholog) NW_004955415 16180074 16282937 + 102013928 AGCD01016375;AGCD01016376;GBDJ01222624;XM_005380839;XM_005380840;XM_005380841;XM_005380842 XP_005380896;XP_005380897;XP_005380898;XP_005380899 MODEL 39132832 snrna U6 U6 spliceosomal RNA 8822316 protein-coding LOC102028847 olfactory receptor 6N2 ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955468 10647981 10648934 - 102028847 AGCD01052093;XM_005400318 XP_005400375 MODEL 8818746 protein-coding Kplce KPRP N-terminal and LCE C-terminal like protein ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog) NW_004955592 680843 682874 - 102014726 AGCD01076320;GBCC01015742;XM_005414624 XP_005414681 MODEL 39132833 snrna U6 U6 spliceosomal RNA 9004184 protein-coding Vrk1 VRK serine/threonine kinase 1 ENCODES a protein that exhibits histone binding (ortholog); histone H2AX kinase activity (ortholog); histone H3S10 kinase activity (ortholog); INVOLVED IN Cajal body organization (ortholog); chromatin remodeling (ortholog); DNA damage response (ortholog); ASSOCIATED WITH autosomal recessive distal hereditary motor neuronopathy 10 (ortholog); genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN Cajal body (ortholog); chromatin (ortholog); cytosol (ortholog) NW_004955438 18508915 18595104 + 102025176 AGCD01035473;AGCD01035474;AGCD01035475;AGCD01035476;AGCD01035477;AGCD01035478;GBBH01126465;XM_005390407;XM_005390408;XM_013517272 XP_005390464;XP_005390465;XP_013372726 MODEL 8934707 protein-coding Shld2 shieldin complex subunit 2 INVOLVED IN negative regulation of double-strand break repair via homologous recombination (ortholog); positive regulation of double-strand break repair via nonhomologous end joining (ortholog); positive regulation of isotype switching (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); familial hyperinsulinemic hypoglycemia 6 (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); chromosome (ortholog); nucleoplasm (ortholog) NW_004955510 6021477 6114745 + 102013637 AGCD01066299;AGCD01066300;AGCD01066301;GBDF01147026;XM_005407911;XM_005407912;XM_005407913;XM_013506312;XR_001231666 XP_005407968;XP_005407969;XP_005407970;XP_013361766 MODEL 9054832 ncrna LOC102004278 uncharacterized LOC102004278 NW_004955480 4530020 4536073 + 102004278 AGCD01056642;GBDF01146524;XR_263743 MODEL 8855067 pseudo LOC102003415 keratinocyte-associated protein 2-like NW_004955457 11849410 11853825 + 102003415 AGCD01046988 MODEL 8749384 protein-coding Sec24d SEC24 homolog D, COPII coat complex component ENCODES a protein that exhibits SNARE binding (ortholog); zinc ion binding (ortholog); INVOLVED IN COPII-coated vesicle cargo loading (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Cole-Carpenter syndrome (ortholog); Cole-Carpenter Syndrome 2 (ortholog); epilepsy (ortholog); FOUND IN COPII vesicle coat (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955428 21381809 21475329 + 102024827 AGCD01028137;AGCD01028138;GBDI01076509;XM_013515264;XM_013515265 XP_013370718;XP_013370719 MODEL 8886008 protein-coding Nfat5 nuclear factor of activated T cells 5 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cellular response to cytokine stimulus (ortholog); DNA damage response (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH autoimmune disease of gastrointestinal tract (ortholog); autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955484 7034799 7142883 - 102024341 AGCD01058306;AGCD01058307;GBDI01292195;XM_005403544;XM_005403545;XM_005403546;XM_005403548;XM_005403549;XM_005403550;XM_005403552;XM_013503964;XM_013503965;XM_013503966;XM_013503967;XM_013503968 XP_005403601;XP_005403602;XP_005403603;XP_005403605;XP_005403606;XP_005403607;XP_005403609;XP_013359418;XP_013359419;XP_013359420;XP_013359421;XP_013359422 MODEL 8831437 protein-coding Erp44 endoplasmic reticulum protein 44 ENCODES a protein that exhibits protein disulfide isomerase activity (ortholog); INVOLVED IN glycoprotein metabolic process (ortholog); protein folding (ortholog); response to endoplasmic reticulum stress (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type II (ortholog); congenital myasthenic syndrome 14 (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum lumen (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955419 25584404 25665590 + 102013936 AGCD01020388;AGCD01020389;GBCQ01063714;XM_005382816 XP_005382873 MODEL 10362850 ncrna LOC106147237 uncharacterized LOC106147237 NW_004955408 9261729 9335080 + 106147237 AGCD01008241;AGCD01008242;AGCD01008243;AGCD01008244;AGCD01008245;AGCD01008246;AGCD01008247;GBDF01045366;XR_001232012;XR_001232014;XR_001232015;XR_001232016 MODEL 8949266 ncrna LOC102004280 uncharacterized LOC102004280 NW_004955482 1521498 1525666 - 102004280 AGCD01057219;GBBH01079736;XR_263818 MODEL 39132545 snrna U6 U6 spliceosomal RNA 8883817 ncrna LOC102009295 uncharacterized LOC102009295 NW_004955424 20161293 20182303 - 102009295 AGCD01024845;GBDF01236664;XR_261089 MODEL 9025431 protein-coding LOC102021770 arylacetamide deacetylase-like 4 NW_004955486 1044485 1053799 + 102021770 AGCD01058918;GBCC01033407;XM_005403942;XM_005403943 XP_005403999;XP_005404000 MODEL 8724820 protein-coding Saxo5 stabilizer of axonemal microtubules 5 ASSOCIATED WITH hereditary spastic paraplegia 39 (ortholog); mucolipidosis type IV (ortholog) NW_004955563 1723768 1729831 - 102016531 AGCD01074159;AGCD01074160;GBDF01087755;GBDF01087757;XM_013509149 XP_013364603 MODEL 8857598 protein-coding LOC102012851 late histone H2B.L4-like NW_004955413 862577 885893 - 102012851 AGCD01013492;AGCD01013493;GBDI01162044;XM_013511494 XP_013366948 MODEL 8819228 protein-coding Lrr1 leucine rich repeat protein 1 ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); primary ciliary dyskinesia (ortholog) NW_004955409 13039029 13048038 - 102003097 AGCD01009587;GBDF01305385;XM_005376844;XM_005376845;XM_005376846 XP_005376901;XP_005376902;XP_005376903 MODEL 10298693 ncrna LOC106147239 uncharacterized LOC106147239 NW_004955532 2933323 2961085 - 106147239 AGCD01070262;GBCE01007307;XR_001232017;XR_001232018 MODEL 8781093 protein-coding Tas2r40 taste 2 receptor member 40 ENCODES a protein that exhibits bitter taste receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog) NW_004955494 415607 416569 - 102025474 AGCD01061376;XM_005405364 XP_005405421 MODEL 8865462 protein-coding Ror1 receptor tyrosine kinase like orphan receptor 1 ENCODES a protein that exhibits signaling receptor activity (ortholog); Wnt receptor activity (ortholog); Wnt-protein binding (ortholog); INVOLVED IN astrocyte development (ortholog); cell population proliferation (ortholog); inner ear development (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 108 (ortholog); Breast Neoplasms (ortholog); congenital disorder of glycosylation It (ortholog); FOUND IN axon terminus (ortholog); cell surface (ortholog); plasma membrane (ortholog) NW_004955423 26029122 26274668 - 102030439 AGCD01024090;AGCD01024091;AGCD01024092;AGCD01024093;GBDJ01348699;XM_005385320;XM_013514429;XM_013514431;XM_013514432 XP_005385377;XP_013369883;XP_013369885;XP_013369886 MODEL 8792406 pseudo LOC102009303 39S ribosomal protein L28, mitochondrial pseudogene NW_004955428 16029765 16030480 - 102009303 AGCD01028014 MODEL 8715733 protein-coding Yes1 YES proto-oncogene 1, Src family tyrosine kinase ENCODES a protein that exhibits enzyme binding (ortholog); epidermal growth factor receptor binding (ortholog); phosphotyrosine residue binding (ortholog); INVOLVED IN cellular response to platelet-derived growth factor stimulus (ortholog); cellular response to retinoic acid (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; glypican signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); double outlet right ventricle (ortholog); FOUND IN actin filament (ortholog); cell junction (ortholog); cytoplasm (ortholog) NW_004955402 9199704 9255183 + 102021819 AGCD01000209;AGCD01000210;AGCD01000211;GBDF01249763;XM_005372669 XP_005372726 MODEL 8969866 pseudo LOC102028851 cyclin-dependent kinase 1 pseudogene NW_004955414 7272154 7278058 - 102028851 AGCD01014953 MODEL 39131928 snrna U1 U1 spliceosomal RNA 9065461 pseudo LOC102027170 ethylmalonyl-CoA decarboxylase pseudogene NW_004955414 31475895 31477571 - 102027170 AGCD01015751 MODEL 9064075 protein-coding LOC102024127 secretory carrier-associated membrane protein 4 NW_004955495 6123148 6142488 - 102024127 AGCD01062051;AGCD01062052;GBCB01076724;XM_005405943;XM_013505268;XM_013505269;XM_013505270;XM_013505271;XM_013505272 XP_005406000;XP_013360722;XP_013360723;XP_013360724;XP_013360725;XP_013360726 MODEL 8886494 protein-coding Layn layilin ENCODES a protein that exhibits hyaluronic acid binding (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); Carney-Stratakis syndrome (ortholog) NW_004955412 13282871 13298214 + 102015617 AGCD01012831;GBCE01024195;XM_013511017 XP_013366471 MODEL 8943343 protein-coding Yif1a Yip1 interacting factor homolog A, membrane trafficking protein ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955422 19028871 19032850 + 102016065 AGCD01022972;GBDF01046174;XM_005384420;XM_005384421 XP_005384477;XP_005384478 MODEL 8904289 protein-coding Mlf1 myeloid leukemia factor 1 ENCODES a protein that exhibits DNA binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN DNA-templated transcription (ortholog); myeloid progenitor cell differentiation (ortholog); regulation of cell cycle G1/S phase transition (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Stomach Neoplasms (ortholog); FOUND IN ciliary basal body (ortholog); ciliary base (ortholog); cilium (ortholog) NW_004955448 9345303 9383366 + 102025959 AGCD01041470;AGCD01041471;AGCD01041472;GBDF01006239;XM_005393098;XM_005393099;XM_005393101;XM_013518626 XP_005393155;XP_005393156;XP_005393158;XP_013374080 MODEL 8900569 protein-coding Vrk2 VRK serine/threonine kinase 2 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein kinase binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); protein autophosphorylation (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH Fanconi anemia (ortholog); Fanconi anemia complementation group A (ortholog); Fanconi anemia complementation group L (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955424 25307221 25397900 - 102030549 AGCD01025040;AGCD01025041;GBDI01356535;GBDJ01354912;XM_013514668 XP_013370122 MODEL 8773572 ncrna LOC102017220 uncharacterized LOC102017220 NW_004955469 8942157 8947968 - 102017220 AGCD01052483;AGCD01052484;GBDF01078798;XR_001236992;XR_263441 MODEL 8919493 pseudo LOC102004978 DNA-directed RNA polymerases I, II, and III subunit RPABC4 pseudogene NW_004955547 2461150 2462490 - 102004978 AGCD01072282 MODEL 9031384 pseudo LOC102020523 ubiquitin carboxyl-terminal hydrolase isozyme L3 pseudogene NW_004955405 14169274 14176291 + 102020523 AGCD01004919 MODEL 8728162 protein-coding Sec31a SEC31 homolog A, COPII coat complex component ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); INVOLVED IN COPII-coated vesicle cargo loading (ortholog); response to calcium ion (ortholog); ASSOCIATED WITH chromosome 4q21 deletion syndrome (ortholog); diffuse large B-cell lymphoma (ortholog); Halperin-Birk syndrome (ortholog); FOUND IN COPII vesicle coat (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); cytoplasm (ortholog) NW_004955433 6830732 6891259 - 102008447 AGCD01031549;AGCD01031550;AGCD01031551;AGCD01031552;GBCQ01007447;XM_005388248;XM_005388249;XM_005388250;XM_005388251;XM_005388252;XM_005388253;XM_005388256;XM_013516167;XM_013516168;XM_013516169;XM_013516170;XM_013516171;XM_013516172 XP_005388305;XP_005388306;XP_005388307;XP_005388308;XP_005388309;XP_005388310;XP_005388313;XP_013371621;XP_013371622;XP_013371623;XP_013371624;XP_013371625;XP_013371626 MODEL 8817913 pseudo LOC102006298 heat shock factor-binding protein 1 pseudogene NW_004955582 64495 67098 - 102006298 AGCD01075739;AGCD01075740 MODEL 9066884 pseudo LOC102004979 survival of motor neuron-related-splicing factor 30 pseudogene NW_004955548 1417585 1418300 - 102004979 AGCD01072375 MODEL 8854830 protein-coding Tfpt TCF3 fusion partner ENCODES a protein that exhibits DNA binding (ortholog); protein kinase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN apoptotic process (ortholog); apoptotic signaling pathway (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH fundus dystrophy (ortholog); retinitis pigmentosa (ortholog); FOUND IN actin filament (ortholog); cytoplasm (ortholog); Ino80 complex (ortholog) NW_004955604 136357 139799 + 102020864 AGCD01076864;AGCD01076865;GBBH01188177;XM_013510092 XP_013365546 MODEL 8986239 protein-coding Saysd1 SAYSVFN motif domain containing 1 ENCODES a protein that exhibits UFM1-modified protein reader activity (ortholog); INVOLVED IN protein quality control for misfolded or incompletely synthesized proteins (ortholog); rescue of stalled ribosome (ortholog); FOUND IN endoplasmic reticulum (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955437 4369140 4375405 + 102013002 AGCD01034364;GBDF01005767;XM_005389604 XP_005389661 MODEL 8726520 protein-coding Mlf2 myeloid leukemia factor 2 ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); peroxisome biogenesis disorder 2B (ortholog); FOUND IN glutamatergic synapse (ortholog); nucleus (ortholog); synapse (ortholog) NW_004955413 4359936 4364284 - 102028519 AGCD01013610;GBDJ01003878;XM_005378824 XP_005378881 MODEL 9054468 protein-coding Vrk3 VRK serine/threonine kinase 3 ENCODES a protein that exhibits protein phosphatase binding (ortholog); INVOLVED IN negative regulation of ERK1 and ERK2 cascade (ortholog); skeletal muscle tissue development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955559 933053 967998 + 102022865 AGCD01073621;AGCD01073622;GBDF01001629;XM_005412796;XM_005412797;XM_005412798;XM_005412799 XP_005412853;XP_005412854;XP_005412855;XP_005412856 MODEL 8934086 protein-coding LOC102012852 olfactory receptor 52K1-like NW_004955414 19929257 19930261 - 102012852 AGCD01015343;XM_005380042 XP_005380099 MODEL 8714356 protein-coding LOC102022699 60S ribosomal protein L39 NW_004955416 31552058 31553403 + 102022699 AGCD01017761;AGCD01017762;XM_005381677 XP_005381734 MODEL 39132834 snrna U6 U6 spliceosomal RNA 8888423 pseudo LOC102024730 60S ribosomal protein L27a pseudogene NW_004955445 6676924 6677366 + 102024730 AGCD01039497 MODEL 39132291 snrna U12 U12 minor spliceosomal RNA 8777359 pseudo LOC102028853 nuclease-sensitive element-binding protein 1 pseudogene NW_004955474 2144201 2159913 + 102028853 AGCD01054280;AGCD01054281 MODEL 9068207 protein-coding Usp53 ubiquitin specific peptidase 53 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); deubiquitinase activity (ortholog); K63-linked deubiquitinase activity (ortholog); INVOLVED IN action potential (ortholog); epithelial cell apoptotic process (ortholog); neuron apoptotic process (ortholog); ASSOCIATED WITH cholestasis (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN bicellular tight junction (ortholog); cell-cell junction (ortholog) NW_004955428 20957807 21023380 - 102023057 AGCD01028128;AGCD01028129;AGCD01028130;AGCD01028131;GBDK01358376;XM_013515269;XM_013515270;XM_013515271 XP_013370723;XP_013370724;XP_013370725 MODEL 8792509 pseudo LOC102018445 heparan sulfate 2-O-sulfotransferase 1 pseudogene NW_004955569 1146936 1151749 + 102018445 AGCD01074643 MODEL 8884960 protein-coding Shmt1 serine hydroxymethyltransferase 1 ENCODES a protein that exhibits aldehyde-lyase activity (ortholog); amino acid binding (ortholog); glycine hydroxymethyltransferase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); cellular response to tetrahydrofolate (ortholog); dTMP biosynthetic process (ortholog); PARTICIPATES IN carnitine biosynthetic pathway; dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; ASSOCIATED WITH Animal Disease Models (ortholog); autistic disorder (ortholog); breast cancer (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955478 10972791 11001535 + 102019598 AGCD01056156;AGCD01056157;GBDJ01273556;XM_005402276;XM_005402277;XM_013503178 XP_005402333;XP_005402334;XP_013358632 MODEL 8777958 protein-coding LOC102025174 chromosome unknown open reading frame, human C16orf95 ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); KBG syndrome (ortholog); persistent fetal circulation syndrome (ortholog) NW_004955541 1795301 1807870 - 102025174 AGCD01071388;GBDF01003427;XM_005410998;XM_005410999;XM_005411000 XP_005411055;XP_005411056;XP_005411057 MODEL 8978363 protein-coding Sbds SBDS ribosome maturation factor ENCODES a protein that exhibits microtubule binding (ortholog); ribosome binding (ortholog); rRNA binding (ortholog); INVOLVED IN bone marrow development (ortholog); bone mineralization (ortholog); cytosolic ribosome assembly (ortholog); ASSOCIATED WITH Anodontia of Permanent Dentition (ortholog); aplastic anemia (ortholog); argininosuccinic aciduria (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955456 8773917 8782427 - 102010127 AGCD01046502;GBDF01186593;XM_005396725;XM_013520572 XP_005396782;XP_013376026 MODEL 8864632 protein-coding LOC102004282 histone H2B.v1-like NW_004955483 833570 838166 + 102004282 AGCD01057632;AGCD01057633;GBDI01063041;XM_005403424 XP_005403481 MODEL 39132547 snrna U6 U6 spliceosomal RNA 9045366 ncrna LOC102018451 uncharacterized LOC102018451 NW_004955402 60136650 60151376 + 102018451 AGCD01001579;AGCD01001580;XR_259112 MODEL 8786018 protein-coding LOC102025178 uncharacterized LOC102025178 NW_004955546 1105712 1113339 + 102025178 AGCD01072041;GBDI01248776;XM_013508411;XM_013508412;XR_001232206 XP_013363865;XP_013363866 MODEL 8831882 protein-coding Slc18a2 solute carrier family 18 member A2 ENCODES a protein that exhibits amine transmembrane transporter activity (ortholog); enzyme binding (ortholog); heat shock protein binding (ortholog); INVOLVED IN aminergic neurotransmitter loading into synaptic vesicle (ortholog); cellular response to ammonium ion (ortholog); cellular response to xenobiotic stimulus (ortholog); PARTICIPATES IN dopamine biosynthetic pathway; epinephrine biosynthetic pathway; norepinephrine biosynthetic pathway; ASSOCIATED WITH depressive disorder (ortholog); genetic disease (ortholog); infantile parkinsonism-dystonia 2 (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cell body (ortholog) NW_004955431 21949553 21979679 + 102028670 AGCD01030506;AGCD01030507;GBBH01203229;XM_005387871;XM_005387872;XM_013515846 XP_005387928;XP_005387929;XP_013371300 MODEL 10128916 ncrna LOC106147240 uncharacterized LOC106147240 NW_004955532 1138418 1149244 - 106147240 AGCD01070166;GBDF01199196;XR_001232019;XR_001232020 MODEL 8815472 protein-coding Sbf1 SET binding factor 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); phosphatase activity (ortholog); INVOLVED IN spermatid development (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog) NW_004955413 33427283 33450581 - 102028950 AGCD01014669;GBCE01096125;GBDF01046406;XM_013511400;XM_013511401;XM_013511402 XP_013366854;XP_013366855;XP_013366856 MODEL 39132551 snrna U6 U6 spliceosomal RNA 8879320 ncrna LOC102003417 uncharacterized LOC102003417 NW_004955409 3940674 3968535 + 102003417 AGCD01009268;AGCD01009269;GBDF01016673;XR_259752 MODEL 8882298 ncrna LOC102024130 uncharacterized LOC102024130 NW_004955424 13576197 13580849 - 102024130 AGCD01024636;GBDF01251114;XR_261063 MODEL 8995804 protein-coding Ifngr2 interferon gamma receptor 2 ENCODES a protein that exhibits type II interferon receptor activity (ortholog); INVOLVED IN defense response to virus (ortholog); microglial cell activation (ortholog); positive regulation of glutamate receptor signaling pathway (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); COVID-19 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955407 32846927 32863155 + 102015925 AGCD01007685;GBCB01022004;GBDK01022293;XM_013504273 XP_013359727 MODEL 8996258 ncrna LOC102003208 uncharacterized LOC102003208 NW_004955407 34429774 34446403 + 102003208 AGCD01007721;AGCD01007722;GBDF01176950;XR_259606 MODEL 39132553 snrna U6 U6 spliceosomal RNA 8700742 protein-coding LOC102023101 uncharacterized LOC102023101 NW_004955403 1477883 1487353 + 102023101 AGCD01001723;GBDJ01318496;XM_013514706 XP_013370160 MODEL 39133577 snrna U2 U2 spliceosomal RNA 8788569 protein-coding Yif1b Yip1 interacting factor homolog B, membrane trafficking protein INVOLVED IN cilium assembly (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); protein targeting to membrane (ortholog); ASSOCIATED WITH genetic disease (ortholog); Kaya-Barakat-Masson Syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog) NW_004955468 1123924 1133292 + 102017215 AGCD01051757;GBDF01002958;XM_005399857;XM_005399858;XM_005399859;XM_005399860;XM_005399861;XM_005399862;XM_005399864;XM_005399865 XP_005399914;XP_005399915;XP_005399916;XP_005399917;XP_005399918;XP_005399919;XP_005399921;XP_005399922 MODEL 8740163 pseudo LOC102020526 elongation factor 1-beta pseudogene NW_004955406 13063771 13075531 + 102020526 AGCD01005932 MODEL 8716851 protein-coding Usp54 ubiquitin specific peptidase 54 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); K63-linked deubiquitinase activity (ortholog) NW_004955437 18240303 18322197 + 102015888 AGCD01034787;AGCD01034788;AGCD01034789;GBDF01086628;XM_013516768 XP_013372222 MODEL 39132554 snrna U6 U6 spliceosomal RNA 9024338 protein-coding LOC102021771 vomeronasal type-1 receptor 4-like NW_004955421 22001278 22002312 + 102021771 AGCD01022127;XM_005383835 XP_005383892 MODEL 8932104 protein-coding LOC102026135 probable low-specificity L-threonine aldolase 1 NW_004955506 4320402 4325508 + 102026135 AGCD01065332;GBDI01170187;XM_005407510 XP_005407567 MODEL 8736075 protein-coding Znf529 zinc finger protein 529 NW_004955468 2261198 2278594 - 102028400 AGCD01051806;GBDJ01044533;XM_013522320 XP_013377774 MODEL 8941533 protein-coding Tas2r5 taste 2 receptor member 5 ENCODES a protein that exhibits bitter taste receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); ASSOCIATED WITH Hereditary Pancreatitis (ortholog); RASopathy (ortholog); Sengers syndrome (ortholog) NW_004955494 1775222 1776226 - 102006041 AGCD01061422;XM_005405531 XP_005405588 MODEL 8707739 pseudo LOC102006300 60S ribosomal protein L30-like NW_004955402 43644927 43645275 + 102006300 AGCD01001075 MODEL 9009521 protein-coding Sec31b SEC31 homolog B, COPII coat complex component FOUND IN vesicle coat (ortholog) NW_004955485 9615879 9655826 + 102008860 AGCD01058775;AGCD01058776;AGCD01058777;GBDI01185507;XM_005403906;XM_005403908;XM_005403909;XM_005403910;XM_005403911;XM_013504055;XM_013504057;XM_013504058;XM_013504059;XM_013504060 XP_005403963;XP_005403965;XP_005403966;XP_005403967;XP_005403968;XP_013359509;XP_013359511;XP_013359512;XP_013359513;XP_013359514 MODEL 10309719 ncrna LOC106149221 uncharacterized LOC106149221 NW_004955440 12617681 12624364 - 106149221 AGCD01036432;AGCD01036433;GBDF01078250;XR_001235250 MODEL 8741908 protein-coding Tas2r60 taste 2 receptor member 60 ENCODES a protein that exhibits bitter taste receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); ASSOCIATED WITH melanoma (ortholog); FOUND IN membrane (ortholog) NW_004955494 220847 221851 - 102024923 AGCD01061370;XM_005405523 XP_005405580 MODEL 8956832 pseudo LOC102022700 60S ribosomal protein L17 pseudogene NW_004955417 29886975 29891557 - 102022700 AGCD01018611 MODEL 9024976 protein-coding Usp6nl USP6 N-terminal like ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN Golgi organization (ortholog); plasma membrane to endosome transport (ortholog); positive regulation of GTPase activity (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); melanoma (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog) NW_004955421 27469652 27593771 - 102017671 AGCD01022285;AGCD01022286;GBDI01290844;XM_005383896;XM_005383897;XM_005383898 XP_005383953;XP_005383954;XP_005383955 MODEL 8917228 protein-coding Slc18a3 solute carrier family 18 member A3 ENCODES a protein that exhibits acetylcholine transmembrane transporter activity (ortholog); acetylcholine:proton antiporter activity (ortholog); monoamine:proton antiporter activity (ortholog); INVOLVED IN acetylcholine transport (ortholog); acetylcholine uptake (ortholog); neurotransmitter loading into synaptic vesicle (ortholog); PARTICIPATES IN acetylcholine signaling pathway via muscarinic acetylcholine receptor; acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH Alzheimer's disease (ortholog); asthma (ortholog); Binge Drinking (ortholog); FOUND IN perikaryon; AP-1 adaptor complex (ortholog); AP-2 adaptor complex (ortholog) NW_004955556 696779 698869 - 102029334 AGCD01073179;XM_005412568 XP_005412625 MODEL 8878592 ncrna LOC102008924 uncharacterized LOC102008924 NW_004955410 24913016 24966433 + 102008924 AGCD01011136;GBDK01310034;XR_259862 MODEL 8746622 ncrna LOC102024735 uncharacterized LOC102024735 NW_004955447 14382532 14388650 - 102024735 AGCD01041003;GBDF01149302;XR_001235731;XR_001235732;XR_001235733;XR_001235734;XR_001235735;XR_001235736;XR_001235737;XR_001235738 MODEL 8795800 protein-coding Sbf2 SET binding factor 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); identical protein binding (ortholog); phosphatase binding (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); Charcot-Marie-Tooth disease type 4B2 (ortholog); FOUND IN membrane (ortholog); vacuolar membrane (ortholog) NW_004955414 25463962 25845368 - 102020439 AGCD01015607;AGCD01015608;AGCD01015609;AGCD01015610;AGCD01015611;AGCD01015612;AGCD01015613;AGCD01015614;AGCD01015615;AGCD01015616;AGCD01015617;AGCD01015618;AGCD01015619;AGCD01015620;AGCD01015621;AGCD01015622;AGCD01015623;AGCD01015624;AGCD01015625;GBDF01128046;XM_013511938 XP_013367392 MODEL 8994890 ncrna LOC102007447 uncharacterized LOC102007447 NW_004955496 3205929 3212240 - 102007447 AGCD01062284;GBCQ01088384;XR_264174 MODEL 9052577 protein-coding Tnks2 tankyrase 2 ENCODES a protein that exhibits enzyme binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN multicellular organism growth (ortholog); negative regulation of telomere maintenance via telomere lengthening (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; FOUND IN cytoplasm (ortholog); nuclear envelope (ortholog); nucleus (ortholog) NW_004955425 1419013 1492267 - 102007572 AGCD01025230;AGCD01025231;GBCB01057193;XM_005385828;XM_013514874 XP_005385885;XP_013370328 MODEL 8875335 ncrna LOC102004284 uncharacterized LOC102004284 NW_004955420 3065393 3096845 + 102004284 AGCD01020612;GBDF01113022;XR_260679;XR_260680 MODEL 8771462 protein-coding Tasl TLR adaptor interacting with endolysosomal SLC15A4 INVOLVED IN positive regulation of innate immune response (ortholog); positive regulation of toll-like receptor 7 signaling pathway (ortholog); positive regulation of toll-like receptor 8 signaling pathway (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Duchenne muscular dystrophy (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); endolysosome membrane (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955531 207614 293127 + 102017498 AGCD01069977;AGCD01069978;AGCD01069979;AGCD01069980;AGCD01069981;AGCD01069982;AGCD01069983;AGCD01069984;AGCD01069985;AGCD01069986;AGCD01069987;GBCQ01146366;XM_005410129;XM_013507559 XP_005410186;XP_013363013 MODEL 8775227 protein-coding Usp7 ubiquitin specific peptidase 7 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); deubiquitinase activity (ortholog); INVOLVED IN DNA alkylation repair (ortholog); monoubiquitinated protein deubiquitination (ortholog); negative regulation of gene expression via chromosomal CpG island methylation (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 1C (ortholog); GABA aminotransferase deficiency (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955442 9316022 9355751 + 102014292 AGCD01037677;AGCD01037678;GBCB01021613;XM_005391205;XM_005391206;XM_005391207;XM_013517899 XP_005391262;XP_005391263;XP_005391264;XP_013373353 MODEL 9054227 protein-coding LOC102009305 olfactory receptor 1030-like NW_004955511 1711783 1712721 + 102009305 AGCD01066377;XM_005407973 XP_005408030 MODEL 8760612 protein-coding LOC102018453 protocadherin alpha-11 NW_004955611 320712 330219 - 102018453 AGCD01077161;AGCD01077162;AGCD01077163;XM_005414947 XP_005415004 MODEL 8800239 pseudo LOC102004286 prickle-like protein 1 pseudogene NW_004955420 23753712 23754662 - 102004286 AGCD01021255 MODEL 8997577 pseudo LOC102022132 geranylgeranyl transferase type-1 subunit beta pseudogene NW_004955561 354024 359834 + 102022132 AGCD01073821 MODEL 8992209 protein-coding Mlh1 mutL homolog 1 ENCODES a protein that exhibits chromatin binding (ortholog); enzyme activator activity (ortholog); enzyme binding (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); double-strand break repair via nonhomologous end joining (ortholog); PARTICIPATES IN altered mismatch repair pathway; colorectal cancer pathway; endometrial cancer pathway; ASSOCIATED WITH bile duct cancer (ortholog); breast cancer (ortholog); Breast Cancer, Familial (ortholog); FOUND IN chiasma (ortholog); chromosome (ortholog); condensed chromosome (ortholog) NW_004955421 3890291 3936892 + 102003246 AGCD01021672;AGCD01021673;GBCB01073688;XM_005383684;XM_005383685;XM_005383686;XM_005383688 XP_005383741;XP_005383742;XP_005383743;XP_005383745 MODEL 8952945 protein-coding Vrtn vertebrae development associated INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN nucleus (ortholog) NW_004955523 1125800 1136991 - 102019631 AGCD01068499;GBDF01042943;XM_005409396 XP_005409453 MODEL 8815560 protein-coding Tasor transcription activation suppressor ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN anterior/posterior axis specification, embryo (ortholog); constitutive heterochromatin formation (ortholog); mesodermal to mesenchymal transition involved in gastrulation (ortholog); ASSOCIATED WITH high grade glioma (ortholog); FOUND IN heterochromatin (ortholog); nucleoplasm (ortholog) NW_004955430 6440655 6480956 - 102004306 AGCD01029292;AGCD01029293;AGCD01029294;AGCD01029295;AGCD01029296;GBBH01227717;GBDI01138171;XM_013515613;XM_013515614 XP_013371067;XP_013371068 MODEL 10241858 ncrna LOC106149222 uncharacterized LOC106149222 NW_004955440 16710879 16729299 - 106149222 AGCD01036527;XR_001235251 MODEL 8803654 protein-coding LOC102016211 potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like NW_004955581 335182 336350 - 102016211 AGCD01075667;XM_013509744 XP_013365198 MODEL 8957973 protein-coding Znf532 zinc finger protein 532 ASSOCIATED WITH autistic disorder (ortholog); diastolic heart failure (ortholog); immunodeficiency 12 (ortholog) NW_004955402 43075262 43191656 + 102011491 AGCD01001062;AGCD01001063;AGCD01001064;AGCD01001065;AGCD01001066;GBDF01253904;XM_005372990;XM_005372991;XM_005372992;XM_005372994;XM_005372995;XM_013511055;XM_013511060 XP_005373047;XP_005373048;XP_005373049;XP_005373051;XP_005373052;XP_013366509;XP_013366514 MODEL 8955205 protein-coding Spmip8 sperm microtubule inner protein 8 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955433 15551435 15558054 + 102009097 AGCD01031758;GBDF01082073;XM_005388429 XP_005388486 MODEL 8960935 protein-coding Ifnk interferon kappa ENCODES a protein that exhibits type I interferon receptor binding (ortholog); INVOLVED IN cytokine-mediated signaling pathway (ortholog); regulation of DNA-templated transcription (ortholog); response to virus (ortholog) NW_004955472 7359453 7360055 - 102023465 AGCD01053621;XM_005415249 XP_005415306 MODEL 8767340 ncrna LOC102022133 uncharacterized LOC102022133 NW_004955563 1392184 1393331 + 102022133 AGCD01074145;GBDF01189491;XR_265016 MODEL 8757906 protein-coding Sec61a1 SEC61 translocon subunit alpha 1 ENCODES a protein that exhibits calcium channel activity (ortholog); ribosome binding (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN cotranslational protein targeting to membrane (ortholog); endoplasmic reticulum organization (ortholog); post-translational protein targeting to endoplasmic reticulum membrane (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); Autosomal Dominant Tubulointerstitial Kidney Disease 5 (ortholog); autosomal recessive Alport syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); membrane (ortholog); Sec61 translocon complex (ortholog) NW_004955429 15637461 15652556 - 102026894 AGCD01028811;GBDF01084562;XM_005387046 XP_005387103 MODEL 8751917 protein-coding LOC102024131 phospholipid-transporting ATPase IB NW_004955497 4990555 5444957 + 102024131 AGCD01062590;AGCD01062591;AGCD01062592;AGCD01062593;GBCE01063645;GBDF01004666;XM_005406335;XM_013505503;XM_013505504;XM_013505505 XP_005406392;XP_013360957;XP_013360958;XP_013360959 MODEL 10233300 ncrna LOC106149223 uncharacterized LOC106149223 NW_004955440 13172323 13189586 - 106149223 AGCD01036442;XR_001235252 MODEL 8791447 ncrna LOC102023102 uncharacterized LOC102023102 NW_004955404 2801452 2805235 - 102023102 AGCD01003265;GBDF01287830;XR_259294 MODEL 8856226 ncrna LOC102016212 uncharacterized LOC102016212 NW_004955402 7391497 7396480 - 102016212 AGCD01000173;GBDK01265607;XR_001235803;XR_001235805;XR_259042 MODEL 39131501 protein-coding SBK1 SH3 domain binding kinase 1 8972827 ncrna LOC102026136 uncharacterized LOC102026136 NW_004955429 1663661 1673828 + 102026136 AGCD01028404;GBDF01115959;XR_001234483;XR_261311 MODEL 8803489 protein-coding LOC102007803 liver carboxylesterase 1-like NW_004955433 13305854 13329280 - 102007803 AGCD01031684;GBBH01002391;XM_005388326;XM_005388327 XP_005388383;XP_005388384 MODEL 10092742 ncrna LOC106149224 uncharacterized LOC106149224 NW_004955440 15676324 15677876 + 106149224 AGCD01036496;GBDJ01383023;XR_001235254 MODEL 8903871 ncrna LOC102006301 uncharacterized LOC102006301 NW_004955450 13203566 13210711 - 102006301 AGCD01042729;GBDF01222682;XR_001235845;XR_001235847;XR_001235848 MODEL 8986693 pseudo LOC102003418 neuroplastin pseudogene NW_004955409 8959472 8960507 + 102003418 AGCD01009426 MODEL 8771752 protein-coding LOC102009306 olfactory receptor 10AG1-like NW_004955511 845267 846223 - 102009306 AGCD01066345;XM_005408213 XP_005408270 MODEL 8861628 protein-coding Sbk1 SH3 domain binding kinase 1 ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN peptidyl-serine phosphorylation (ortholog); peptidyl-threonine phosphorylation (ortholog); ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog) NW_004955493 6383626 6394919 + 102016610 AGCD01061100;GBBH01021962;GBCB01041743;XM_013504891;XM_013504892;XM_013504893 XP_013360345;XP_013360346;XP_013360347 MODEL 10299661 ncrna LOC106149225 uncharacterized LOC106149225 NW_004955440 14007611 14190374 + 106149225 AGCD01036457;AGCD01036458;AGCD01036459;AGCD01036460;AGCD01036461;AGCD01036462;AGCD01036463;GBDF01040542;XR_001235257;XR_001235258 MODEL 8926583 protein-coding LOC102006303 basic salivary proline-rich protein 4-like NW_004955451 12633382 12651062 - 102006303 AGCD01043417;GBCQ01011558;XM_005394240;XR_001235989 XP_005394297 MODEL 8909570 ncrna LOC102009308 uncharacterized LOC102009308 NW_004955431 13033825 13037782 - 102009308 AGCD01030276;GBDF01225489;XR_001234590 MODEL 8829807 protein-coding Kpna1 karyopherin subunit alpha 1 ENCODES a protein that exhibits nuclear import signal receptor activity (ortholog); nuclear localization sequence binding (ortholog); INVOLVED IN NLS-bearing protein import into nucleus (ortholog); postsynapse to nucleus signaling pathway (ortholog); regulation of apoptotic process (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN cytosol (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955427 21705407 21764913 - 102010714 AGCD01027454;AGCD01027455;AGCD01027456;AGCD01027457;AGCD01027458;GBCB01002472;XM_005386512 XP_005386569 MODEL 8707548 pseudo LOC102027172 tripartite motif-containing protein 52-like NW_004955473 7795328 7799661 - 102027172 AGCD01054040 MODEL 39132555 snrna U6 U6 spliceosomal RNA 8993240 protein-coding LOC102004982 uncharacterized LOC102004982 NW_004955558 812403 851364 - 102004982 AGCD01073392;AGCD01073393;AGCD01073394;GBDF01050328;XM_013508873;XM_013508874;XM_013508875;XM_013508876;XM_013508877;XM_013508878;XM_013508879;XM_013508880;XR_001232320;XR_001232321;XR_001232322;XR_001232323 XP_013364327;XP_013364328;XP_013364329;XP_013364330;XP_013364331;XP_013364332;XP_013364333;XP_013364334 MODEL 8925478 protein-coding Yipf1 Yip1 domain family member 1 FOUND IN Golgi apparatus (ortholog); Golgi medial cisterna (ortholog); Golgi trans cisterna (ortholog) NW_004955464 5369690 5408470 + 102009700 AGCD01050006;GBDF01051315;XM_005398553;XM_005398554;XM_005398555 XP_005398610;XP_005398611;XP_005398612 MODEL 8889748 pseudo LOC102009309 ubiquitin-40S ribosomal protein S27a pseudogene NW_004955514 3732965 3733577 - 102009309 AGCD01067111 MODEL 8752635 ncrna LOC102023798 uncharacterized LOC102023798 NW_004955414 29735573 29763795 - 102023798 AGCD01015714;AGCD01015715;GBDK01325459;XR_001233139;XR_260213;XR_260214 MODEL 8767245 protein-coding Lbh LBH regulator of WNT signaling pathway INVOLVED IN mammary gland development (ortholog); mammary gland epithelial cell differentiation (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955469 12054727 12078796 + 102020650 AGCD01052576;GBDI01078372;XM_005400551 XP_005400608 MODEL 8729546 protein-coding Kpna2 karyopherin subunit alpha 2 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); histone deacetylase binding (ortholog); nuclear import signal receptor activity (ortholog); INVOLVED IN entry of viral genome into host nucleus through nuclear pore complex via importin (ortholog); NLS-bearing protein import into nucleus (ortholog); positive regulation of type I interferon production (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955478 7121432 7134327 + 102012092 AGCD01055945;AGCD01055946;AGCD01055947;GBDF01005307;XM_005402159 XP_005402216 MODEL 8778525 protein-coding LOC102018455 actin-related protein T1-like NW_004955670 38169 39593 - 102018455 AGCD01077935;GBDF01251846;XM_005415068 XP_005415125 MODEL 8785512 protein-coding Bnip3l BCL2 interacting protein 3 like ENCODES a protein that exhibits identical protein binding (ortholog); lamin binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); defense response to virus (ortholog); mitochondrial protein catabolic process (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; mitochondrial autophagy pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Cerebral Hemorrhage (ortholog); Chronic Cerebral Hypoperfusion (ortholog); FOUND IN endoplasmic reticulum (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955403 49122408 49144162 + 102027479 AGCD01002935;GBDF01047886;XM_005373726 XP_005373783 MODEL 9055942 protein-coding LOC102026137 olfactory receptor 1013-like NW_004955511 1851605 1852540 - 102026137 AGCD01066381;XM_005408246 XP_005408303 MODEL 8891762 pseudo LOC102022703 cyclin-dependent kinase 4 pseudogene NW_004955418 20687185 20701319 - 102022703 AGCD01019241 MODEL 8849967 protein-coding Vsig1 V-set and immunoglobulin domain containing 1 INVOLVED IN epithelial cell morphogenesis (ortholog); maintenance of gastrointestinal epithelium (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Charcot-Marie-Tooth disease type X (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955490 7837846 7871540 - 102015208 AGCD01060265;GBDJ01145763;XM_005404682 XP_005404739 MODEL 39133579 snrna U2 U2 spliceosomal RNA 8701375 protein-coding Tasor2 transcription activation suppressor family member 2 ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); schizophrenia (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955421 22381295 22448115 + 102025253 AGCD01022134;AGCD01022135;AGCD01022136;GBDF01085789;XM_005383842;XM_005383843;XM_005383844;XM_005383845;XM_005383846;XM_005383847;XM_013513662;XM_013513663;XM_013513664 XP_005383899;XP_005383900;XP_005383901;XP_005383902;XP_005383903;XP_005383904;XP_013369116;XP_013369117;XP_013369118 MODEL 8947875 protein-coding Slc18b1 solute carrier family 18 member B1 ENCODES a protein that exhibits monoamine:proton antiporter activity (ortholog); polyamine:proton antiporter activity (ortholog); INVOLVED IN serotonin uptake (ortholog); spermidine transport (ortholog); spermine transport (ortholog); FOUND IN secretory granule membrane (ortholog); synaptic vesicle membrane (ortholog) NW_004955436 13286811 13316037 - 102025390 AGCD01033856;GBDK01322576;XM_005389219;XM_013516687;XM_013516688 XP_005389276;XP_013372141;XP_013372142 MODEL 9022939 ncrna LOC102018460 uncharacterized LOC102018460 NW_004955452 939105 985800 - 102018460 AGCD01043828;GBDI01241145;XR_262631 MODEL 8731900 ncrna LOC102026142 uncharacterized LOC102026142 NW_004955514 5277373 5284290 + 102026142 AGCD01067150;GBDF01086629;XR_264514 MODEL 9068205 pseudo LOC102022135 olfactory receptor 5V1-like NW_004955568 1014704 1015512 - 102022135 AGCD01074537 MODEL 8965331 ncrna LOC102012854 uncharacterized LOC102012854 NW_004955471 10905684 10911425 - 102012854 AGCD01053235;GBDF01112987;XR_263533 MODEL 39132019 snrna U2 U2 spliceosomal RNA 8846743 protein-coding LOC102027628 olfactory receptor 8D2-like NW_004955412 25090768 25091718 + 102027628 AGCD01013134;XM_005378646 XP_005378703 MODEL 8748525 ncrna LOC102026150 uncharacterized LOC102026150 NW_004955528 1471337 1477346 - 102026150 AGCD01069564;GBCB01001641;XR_001231979;XR_264689 MODEL 39132837 snrna U6 U6 spliceosomal RNA 9040228 protein-coding Diablo diablo IAP-binding mitochondrial protein INVOLVED IN apoptotic signaling pathway (ortholog); intrinsic apoptotic signaling pathway in response to oxidative stress (ortholog); neuron apoptotic process (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 64 (ortholog); brain ischemia (ortholog); FOUND IN CD40 receptor complex (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955482 6354502 6364424 + 102007662 AGCD01057387;GBCE01031683;GBDK01080617;XM_005403097 XP_005403154 MODEL 8898569 protein-coding Nfatc1 nuclear factor of activated T cells 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN aortic valve development (ortholog); aortic valve morphogenesis (ortholog); B-1a B cell differentiation (ortholog); ASSOCIATED WITH aortic valve stenosis (ortholog); Burn-McKeown syndrome (ortholog); chromosome 18q deletion syndrome (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nuclear body (ortholog) NW_004955402 62558392 62674347 + 102023764 AGCD01001644;AGCD01001645;AGCD01001646;AGCD01001647;GBDF01221921;XM_005373108;XM_005373109;XM_005373110;XM_005373112;XM_005373113;XM_013511612;XM_013511624 XP_005373165;XP_005373166;XP_005373167;XP_005373169;XP_005373170;XP_013367066;XP_013367078 MODEL 39131957 snrna U2 U2 spliceosomal RNA 8771072 pseudo LOC102009311 mitochondrial fission factor pseudogene NW_004955516 2393052 2393940 - 102009311 AGCD01067455 MODEL 10205725 ncrna LOC106149658 uncharacterized LOC106149658 NW_004955405 43058424 43091546 - 106149658 AGCD01005598;AGCD01005599;GBBH01083490;XR_001235970;XR_001235971 MODEL 8889673 protein-coding Lrrc1 leucine rich repeat containing 1 ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN cytosol (ortholog) NW_004955411 2189882 2259733 - 102008608 AGCD01011499;AGCD01011500;AGCD01011501;AGCD01011502;AGCD01011503;GBBH01116719;GBCE01115160;XM_013510755 XP_013366209 MODEL 39133583 snrna U2 U2 spliceosomal RNA 8861163 pseudo LOC102021775 cell division cycle 5-like protein NW_004955493 8532315 8537845 + 102021775 AGCD01061309 MODEL 8913288 protein-coding Znf536 zinc finger protein 536 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); retinoic acid-responsive element binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of neuron differentiation (ortholog); negative regulation of retinoic acid receptor signaling pathway (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH High Myopia (ortholog); Neurodevelopmental Disorders (ortholog); renal cell carcinoma (ortholog) NW_004955468 7049301 7488706 - 102007535 AGCD01051994;AGCD01051995;AGCD01051996;AGCD01051997;AGCD01051998;AGCD01051999;AGCD01052000;AGCD01052001;AGCD01052002;GBDF01016003;XM_005400096;XM_005400097;XM_005400098;XM_005400099;XM_005400100;XM_005400101;XM_005400102;XM_013522536;XM_013522537;XM_013522538 XP_005400153;XP_005400154;XP_005400155;XP_005400156;XP_005400157;XP_005400158;XP_005400159;XP_013377990;XP_013377991;XP_013377992 MODEL 9066488 protein-coding Sec61a2 SEC61 translocon subunit alpha 2 ENCODES a protein that exhibits ribosome binding (ortholog); ASSOCIATED WITH hypoparathyroidism-deafness-renal disease syndrome (ortholog); polycystic liver disease (ortholog); polycystic liver disease 1 (ortholog) NW_004955462 166423 189592 + 102005235 AGCD01049071;GBDK01237240;XM_005398076 XP_005398133 MODEL 39133585 snrna U2 U2 spliceosomal RNA 8836628 protein-coding Errfi1 ERBB receptor feedback inhibitor 1 ENCODES a protein that exhibits kinase binding (ortholog); protein kinase binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN apoptotic process (ortholog); bile acid biosynthetic process (ortholog); cartilage development (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); chromosome 1p36 deletion syndrome (ortholog); Diabetic Nephropathies (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955486 4941143 4955693 + 102030200 AGCD01059072;AGCD01059073;GBCE01052630;XM_005404060 XP_005404117 MODEL 8782346 protein-coding Lrrc10 leucine rich repeat containing 10 ENCODES a protein that exhibits actin binding (ortholog); alpha-actinin binding (ortholog); INVOLVED IN cardiac muscle cell development (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); congestive heart failure (ortholog); dilated cardiomyopathy (ortholog); FOUND IN cytoskeleton (ortholog); mitochondrion (ortholog); myofibril (ortholog) NW_004955405 9908866 9910375 - 102025649 AGCD01004799;XM_005374302 XP_005374359 MODEL 8819305 pseudo LOC102004287 S-phase kinase-associated protein 1 pseudogene NW_004955421 10942295 10942798 - 102004287 AGCD01021885 MODEL 39132556 snrna U6 U6 spliceosomal RNA 39133587 snrna U2 U2 spliceosomal RNA 8830914 protein-coding LOC102023799 olfactory receptor 51F1-like NW_004955414 20361879 20362832 - 102023799 AGCD01015369;XM_013511768 XP_013367222 MODEL 8898897 pseudo LOC102003422 40S ribosomal protein S6 pseudogene NW_004955411 36312248 36313022 - 102003422 AGCD01012470 MODEL 9063431 pseudo LOC102026154 FYN-binding protein pseudogene NW_004955534 2796216 2798595 + 102026154 AGCD01070550 MODEL 8810238 protein-coding Esco1 establishment of sister chromatid cohesion N-acetyltransferase 1 ENCODES a protein that exhibits acetyltransferase activity (ortholog); identical protein binding (ortholog); N-acetyltransferase activity (ortholog); INVOLVED IN peptidyl-lysine acetylation (ortholog); post-translational protein acetylation (ortholog); regulation of DNA replication (ortholog); ASSOCIATED WITH intellectual disability (ortholog); Niemann-Pick disease type C1 (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog) NW_004955402 10207621 10257363 - 102027027 AGCD01000252;AGCD01000253;AGCD01000254;GBCQ01174846;XM_013520167;XM_013520204;XM_013520246;XR_001236265;XR_001236273;XR_001236282 XP_013375621;XP_013375658;XP_013375700 MODEL 9022994 ncrna LOC102020530 uncharacterized LOC102020530 NW_004955408 34283024 34285978 + 102020530 AGCD01008899;AGCD01008900;GBCB01005470;XR_259730 MODEL 8872143 protein-coding Ror2 receptor tyrosine kinase like orphan receptor 2 ENCODES a protein that exhibits frizzled binding (ortholog); mitogen-activated protein kinase kinase kinase binding (ortholog); Wnt-protein binding (ortholog); INVOLVED IN astrocyte development (ortholog); BMP signaling pathway (ortholog); bone mineralization (ortholog); PARTICIPATES IN Wnt signaling, non-canonical pathway; ASSOCIATED WITH 3-methylglutaconic aciduria type 1 (ortholog); autosomal dominant Robinow syndrome 1 (ortholog); autosomal recessive Robinow syndrome (ortholog); FOUND IN cell surface (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955515 313612 554751 + 102012231 AGCD01067197;AGCD01067198;AGCD01067199;AGCD01067200;AGCD01067201;AGCD01067202;AGCD01067203;GBCE01034116;XM_005408865;XM_005408866 XP_005408922;XP_005408923 MODEL 8842784 protein-coding Kpna3 karyopherin subunit alpha 3 ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 88 (ortholog); FOUND IN cytosol (ortholog); NLS-dependent protein nuclear import complex (ortholog); nucleoplasm (ortholog) NW_004955431 3147679 3176577 - 102027326 AGCD01029950;AGCD01029951;AGCD01029952;GBCB01006645;GBCQ01127481;XM_005387599 XP_005387656 MODEL 10357886 ncrna LOC106149517 uncharacterized LOC106149517 NW_004955448 8139101 8155028 - 106149517 AGCD01041437;XR_001235759;XR_001235760;XR_001235761 MODEL 8954999 protein-coding Ifnlr1 interferon lambda receptor 1 INVOLVED IN defense response to virus (ortholog); mucosal immune response (ortholog); positive regulation of cellular respiration (ortholog); ASSOCIATED WITH 3-hydroxy-3-methylglutaryl-CoA lyase deficiency (ortholog); Diamond-Blackfan anemia (ortholog); psoriasis (ortholog); FOUND IN interleukin-28 receptor complex (ortholog) NW_004955452 4002389 4028193 - 102026180 AGCD01043962;AGCD01043963;GBCE01169046;XM_013519716;XM_013519717 XP_013375170;XP_013375171 MODEL 8838624 ncrna LOC102023806 uncharacterized LOC102023806 NW_004955481 1913676 1918044 + 102023806 AGCD01056856;GBDJ01400449;XR_263764;XR_263765 MODEL 8819299 pseudo LOC102003423 eukaryotic translation initiation factor 2 subunit 2 pseudogene NW_004955464 11721827 11722678 - 102003423 AGCD01050161 MODEL 10120759 ncrna LOC106149226 uncharacterized LOC106149226 NW_004955440 10878821 10881310 + 106149226 AGCD01036400;GBDK01095329;XR_001235259;XR_001235260;XR_001235261 MODEL 8816092 protein-coding LOC102027173 uncharacterized LOC102027173 NW_004955415 11313707 11489288 - 102027173 AGCD01016156;AGCD01016157;AGCD01016158;AGCD01016159;AGCD01016160;AGCD01016161;AGCD01016162;AGCD01016163;XM_013512123 XP_013367577 MODEL 9015323 protein-coding LOC102018462 sperm-tail PG-rich repeat-containing protein 2 NW_004955405 7862288 8221282 - 102018462 AGCD01004722;AGCD01004723;AGCD01004724;AGCD01004725;AGCD01004726;AGCD01004727;AGCD01004728;AGCD01004729;AGCD01004730;AGCD01004731;AGCD01004732;AGCD01004733;AGCD01004734;AGCD01004735;GBDF01276672;XM_013517444 XP_013372898 MODEL 8735148 ncrna LOC102016214 uncharacterized LOC102016214 NW_004955449 11070441 11094994 - 102016214 AGCD01042083;GBDF01178339;XR_262498 MODEL 8849623 protein-coding Tasp1 taspase 1 ENCODES a protein that exhibits identical protein binding (ortholog); threonine-type endopeptidase activity (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); proteolysis (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); Multiple Abnormalities (ortholog) NW_004955415 22856382 23091732 - 102030625 AGCD01016545;AGCD01016546;AGCD01016547;AGCD01016548;AGCD01016549;AGCD01016550;GBDF01223881;XM_005380885;XR_001233252 XP_005380942 MODEL 10109524 ncrna LOC106149518 uncharacterized LOC106149518 NW_004955448 1783756 1786187 - 106149518 AGCD01041268;GBDK01419199;XR_001235766 MODEL 8729828 ncrna LOC102021779 uncharacterized LOC102021779 NW_004955495 5177777 5182165 + 102021779 AGCD01061979;AGCD01061980;GBDF01046728;XR_264151;XR_264152 MODEL 8745286 pseudo LOC102003213 chromobox protein homolog 3 pseudogene NW_004955408 30983925 30997950 + 102003213 AGCD01008818;AGCD01008819 MODEL 9005586 protein-coding Rora RAR related orphan receptor A ENCODES a protein that exhibits beta-catenin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to hypoxia (ortholog); cellular response to interleukin-1 (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955450 14262199 14434611 + 102012265 AGCD01042742;AGCD01042743;AGCD01042744;GBBH01203002;XM_013518925;XM_013518926;XM_013518928 XP_013374379;XP_013374380;XP_013374382 MODEL 8867158 protein-coding Sec61b SEC61 translocon subunit beta ENCODES a protein that exhibits epidermal growth factor binding (ortholog); ribosome binding (ortholog); INVOLVED IN ERAD pathway (ortholog); retrograde protein transport, ER to cytosol (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type II (ortholog); congenital myasthenic syndrome 14 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum quality control compartment (ortholog) NW_004955419 26414891 26423260 - 102008858 AGCD01020408;GBCQ01000947;XM_005382941 XP_005382998 MODEL 8997578 protein-coding Shmt2 serine hydroxymethyltransferase 2 ENCODES a protein that exhibits amino acid binding (ortholog); chromatin binding (ortholog); glycine hydroxymethyltransferase activity (ortholog); INVOLVED IN formate biosynthetic process (ortholog); glycine biosynthetic process (ortholog); glycine biosynthetic process from serine (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; folate cycle metabolic pathway; ASSOCIATED WITH cataract 15 multiple types (ortholog); Charcot-Marie-Tooth disease axonal type 2U (ortholog); familial melanoma (ortholog); FOUND IN BRISC complex (ortholog); cytoplasm (ortholog); microtubule cytoskeleton (ortholog) NW_004955458 4957614 4962691 + 102022166 AGCD01047446;GBCQ01036093;XM_005397350 XP_005397407 MODEL 8786728 pseudo LOC102024737 40S ribosomal protein S17 pseudogene NW_004955447 5024803 5026104 - 102024737 AGCD01040736 MODEL 8897290 protein-coding Ppp6c protein phosphatase 6 catalytic subunit ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN negative regulation of cGAS/STING signaling pathway (ortholog); protein dephosphorylation (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); melanoma (ortholog); FOUND IN cytosol (ortholog) NW_004955419 3096882 3133590 + 102015845 AGCD01019705;AGCD01019706;AGCD01019707;GBDF01005066;XM_005382467;XM_005382468 XP_005382524;XP_005382525 MODEL 39131388 protein-coding LBHD2 LBH domain containing 2 8880337 ncrna LOC102004288 uncharacterized LOC102004288 NW_004955422 13815996 13839961 + 102004288 AGCD01022838;AGCD01022839;GBDI01205369;XR_001233902;XR_260874;XR_260875 MODEL 8741357 protein-coding Nrxn2 neurexin 2 ENCODES a protein that exhibits calcium channel regulator activity (ortholog); cell adhesion molecule binding (ortholog); neuroligin family protein binding (ortholog); INVOLVED IN adult behavior (ortholog); chemical synaptic transmission (ortholog); gephyrin clustering involved in postsynaptic density assembly (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); FOUND IN glutamatergic synapse (ortholog); protein-containing complex (ortholog) NW_004955422 20444109 20551870 + 102004395 AGCD01023081;AGCD01023082;AGCD01023083;GBCB01086466;XM_005384572;XM_005384573;XM_005384574;XM_005384575;XM_005384576;XM_005384577;XM_005384578;XM_005384579;XM_005384580;XM_005384581;XM_005384582;XM_005384583;XM_005384584;XM_005384585;XM_013514283;XM_013514285;XM_013514286;XM_013514287;XM_013514288 XP_005384629;XP_005384630;XP_005384631;XP_005384632;XP_005384633;XP_005384634;XP_005384635;XP_005384636;XP_005384637;XP_005384638;XP_005384639;XP_005384640;XP_005384641;XP_005384642;XP_013369737;XP_013369739;XP_013369740;XP_013369741;XP_013369742 MODEL 9012459 protein-coding Bnip5 BCL2 interacting protein 5 ASSOCIATED WITH prostate cancer (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog) NW_004955437 4049113 4067150 - 102009216 AGCD01034359;GBCQ01139589;XM_005389589;XM_005389590;XM_005389591 XP_005389646;XP_005389647;XP_005389648 MODEL 8703074 protein-coding Spmip9 sperm microtubule inner protein 9 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); cytoplasm (ortholog); sperm flagellum (ortholog) NW_004955424 296514 305141 - 102011332 AGCD01024170;AGCD01024171;GBDF01007131;XM_005385378;XM_005385379;XM_013514595;XM_013514596 XP_005385435;XP_005385436;XP_013370049;XP_013370050 MODEL 9028411 protein-coding LOC102021781 tubulin alpha-1C chain-like NW_004955499 225128 255221 - 102021781 AGCD01063201;AGCD01063202;AGCD01063203;AGCD01063204;AGCD01063205;AGCD01063206;GBCQ01114400;XM_013505551 XP_013361005 MODEL 8837606 protein-coding Tnmd tenomodulin INVOLVED IN cellular response to BMP stimulus (ortholog); endothelial cell morphogenesis (ortholog); negative regulation of angiogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); developmental and epileptic encephalopathy 9 (ortholog) NW_004955503 6732791 6750693 + 102020142 AGCD01064767;AGCD01064768;GBBH01218483;XM_005406931 XP_005406988 MODEL 8834993 ncrna LOC102025180 uncharacterized LOC102025180 NW_004955441 15926164 15928611 + 102025180 AGCD01037262;GBDF01043836;XR_262089;XR_262090 MODEL 9041267 protein-coding Tfr2 transferrin receptor 2 ENCODES a protein that exhibits co-receptor binding (ortholog); transferrin receptor activity (ortholog); INVOLVED IN acute-phase response (ortholog); cellular response to iron ion (ortholog); endocytic iron import into cell (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); beta thalassemia (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic vesicle (ortholog); external side of plasma membrane (ortholog); HFE-transferrin receptor complex (ortholog) NW_004955573 272315 289227 + 102017520 AGCD01074972;AGCD01074973;GBDF01155965;XM_005413705;XM_005413706;XM_005413707;XM_005413708 XP_005413762;XP_005413763;XP_005413764;XP_005413765 MODEL 8968973 protein-coding Sbk2 SH3 domain binding kinase family member 2 NW_004955567 778971 783363 + 102019860 AGCD01074432;GBCB01000069;XM_005413309;XM_005413310 XP_005413366;XP_005413367 MODEL 8965816 ncrna LOC102006305 uncharacterized LOC102006305 NW_004955404 24896406 24991834 - 102006305 AGCD01003836;AGCD01003837;AGCD01003838;AGCD01003839;AGCD01003840;GBDF01084048;XR_001235103;XR_001235104 MODEL 8816921 ncrna LOC102022139 uncharacterized LOC102022139 NW_004955448 1024522 1030655 - 102022139 AGCD01041248;GBDK01123674;XR_001235762;XR_001235763;XR_262452 MODEL 8831522 ncrna LOC102017222 uncharacterized LOC102017222 NW_004955470 3874997 3878837 - 102017222 AGCD01052712;GBDF01015388;XR_263469 MODEL 8826828 protein-coding Nrxn3 neurexin 3 ENCODES a protein that exhibits calcium channel regulator activity (ortholog); INVOLVED IN adult behavior (ortholog); chemical synaptic transmission (ortholog); learning (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); presynaptic active zone membrane (ortholog) NW_004955438 2023863 3583671 + 102022230 AGCD01034999;AGCD01035000;AGCD01035001;AGCD01035002;AGCD01035003;AGCD01035004;AGCD01035005;AGCD01035006;AGCD01035007;AGCD01035008;AGCD01035009;AGCD01035010;AGCD01035011;AGCD01035012;AGCD01035013;AGCD01035014;AGCD01035015;AGCD01035016;AGCD01035017;AGCD01035018;AGCD01035019;AGCD01035020;AGCD01035021;AGCD01035022;AGCD01035023;AGCD01035024;GBDK01063802;XM_005390226;XM_005390227;XM_005390228;XM_005390229;XM_013517252;XM_013517253;XM_013517254;XM_013517255;XM_013517256;XM_013517257;XM_013517258;XM_013517259;XM_013517260;XM_013517261;XM_013517262;XM_013517263;XM_013517265;XM_013517266;XM_013517267;XM_013517269;XR_001235159;XR_001235160;XR_001235161 XP_005390283;XP_005390284;XP_005390285;XP_005390286;XP_013372706;XP_013372707;XP_013372708;XP_013372709;XP_013372710;XP_013372711;XP_013372712;XP_013372713;XP_013372714;XP_013372715;XP_013372716;XP_013372717;XP_013372719;XP_013372720;XP_013372721;XP_013372723 MODEL 8753538 protein-coding Znf541 zinc finger protein 541 INVOLVED IN male meiotic nuclear division (ortholog); negative regulation of DNA-templated transcription (ortholog); positive regulation of DNA-templated transcription (ortholog); FOUND IN histone deacetylase complex (ortholog); nucleus (ortholog) NW_004955574 1357610 1406371 - 102013884 AGCD01075174;AGCD01075175;AGCD01075176;AGCD01075177;GBDF01008887;XM_013509544 XP_013364998 MODEL 9009924 protein-coding Lrrc10b leucine rich repeat containing 10B ASSOCIATED WITH Hereditary Paraganglioma-Pheochromocytoma Syndromes (ortholog); intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog) NW_004955511 6096626 6098344 - 102021157 AGCD01066596;GBBH01032881;XM_013506504 XP_013361958 MODEL 9046294 protein-coding LOC102022141 histone H2A type 1-D ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN nucleosome disassembly (ortholog); UV-damage excision repair (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleosome (ortholog) NW_004955581 93494 100249 + 102022141 AGCD01075657;GBDF01114770;XM_013509722 XP_013365176 MODEL 8976170 protein-coding Mlh3 mutL homolog 3 ENCODES a protein that exhibits centromeric DNA binding (ortholog); chromatin binding (ortholog); INVOLVED IN DNA damage response (ortholog); female meiosis I (ortholog); male meiotic nuclear division (ortholog); PARTICIPATES IN mismatch repair pathway; ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); breast carcinoma (ortholog); FOUND IN chiasma (ortholog); condensed chromosome (ortholog); condensed nuclear chromosome (ortholog) NW_004955523 515409 547257 + 102012996 AGCD01068462;AGCD01068463;AGCD01068464;GBCE01163247;XM_005409373;XM_005409374;XM_005409376;XM_013507148 XP_005409430;XP_005409431;XP_005409433;XP_013362602 MODEL 8875762 pseudo LOC102017225 polypeptide N-acetylgalactosaminyltransferase 1-like NW_004955471 2742094 2743946 + 102017225 AGCD01053044 MODEL 8889702 protein-coding LOC102008930 cytospin-B NW_004955467 1024739 1302878 + 102008930 AGCD01051247;AGCD01051248;AGCD01051249;AGCD01051250;AGCD01051251;AGCD01051252;AGCD01051253;AGCD01051254;AGCD01051255;AGCD01051256;GBBH01086340;XM_005399302;XM_005399304;XM_013522196;XM_013522197;XM_013522198;XM_013522199;XM_013522200;XM_013522201;XM_013522202;XM_013522203;XM_013522204;XM_013522205 XP_005399359;XP_005399361;XP_013377650;XP_013377651;XP_013377652;XP_013377653;XP_013377654;XP_013377655;XP_013377656;XP_013377657;XP_013377658;XP_013377659 MODEL 9005430 protein-coding Diaph1 diaphanous related formin 1 ENCODES a protein that exhibits actin binding (ortholog); identical protein binding (ortholog); profilin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament polymerization (ortholog); actin nucleation (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); autosomal dominant nonsyndromic deafness 1 (ortholog); autosomal recessive nonsyndromic deafness 9 (ortholog); FOUND IN brush border (ortholog); cytoplasm (ortholog); microtubule cytoskeleton (ortholog) NW_004955415 12156152 12272961 + 102007112 AGCD01016185;AGCD01016186;AGCD01016187;GBCQ01066059;XM_005380730;XM_005380731;XM_013512217;XM_013512218 XP_005380787;XP_005380788;XP_013367671;XP_013367672 MODEL 9052302 pseudo LOC102022146 uncharacterized LOC102022146 NW_004955402 16988675 17054385 - 102022146 AGCD01000491;AGCD01000492;AGCD01000493 MODEL 10349367 ncrna LOC106147242 uncharacterized LOC106147242 NW_004955408 40083152 40084268 + 106147242 AGCD01009118;GBDF01023751;XR_001232024 MODEL 8988463 pseudo LOC102017228 olfactory receptor 502-like NW_004955414 23588227 23604671 - 102017228 AGCD01015502;AGCD01015503;AGCD01015504;AGCD01015505 MODEL 8757043 ncrna LOC102023105 uncharacterized LOC102023105 NW_004955405 9650121 9655145 - 102023105 AGCD01004786;GBDF01146714;XR_001235294 MODEL 8766837 protein-coding Rorb RAR related orphan receptor B ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); cellular response to retinoic acid (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH Childhood Absence Epilepsy 1 (ortholog); endometriosis (ortholog); epilepsy (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955512 4362287 4541432 - 102007143 AGCD01066741;AGCD01066742;AGCD01066743;GBDF01302225;XM_005408324 XP_005408381 MODEL 9042372 pseudo LOC102004984 60S ribosomal protein L7 pseudogene NW_004955443 10336436 10337202 - 102004984 AGCD01038376 MODEL 8749893 ncrna LOC102022149 uncharacterized LOC102022149 NW_004955451 4480697 4489701 + 102022149 AGCD01043126;GBDF01048873;XR_001235968;XR_262573;XR_262574 MODEL 10307979 protein-coding LOC106147243 translation initiation factor IF-2-like NW_004955532 3273862 3277308 - 106147243 AGCD01070275;GBBH01082318;GBDI01190508;XM_013507641 XP_013363095 MODEL 8889934 ncrna LOC102017232 uncharacterized LOC102017232 NW_004955477 6456388 6467350 + 102017232 AGCD01055610;GBDF01235237;XR_263661 MODEL 39132557 snrna U6 U6 spliceosomal RNA 8999253 protein-coding LOC102027630 histone H4 ENCODES a protein that exhibits structural constituent of chromatin (ortholog); INVOLVED IN negative regulation of megakaryocyte differentiation (ortholog); nucleosome assembly (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); FOUND IN CENP-A containing nucleosome (ortholog); nucleosome (ortholog); nucleus (ortholog) NW_004955413 11517229 11517609 - 102027630 AGCD01013964;GBDI01154113;XM_013511443 XP_013366897 MODEL 8943116 protein-coding LOC102027175 uncharacterized LOC102027175 NW_004955474 299527 301870 + 102027175 AGCD01054213;GBBH01141050;XM_005401456;XM_013502792 XP_005401513;XP_013358246 MODEL 8841343 protein-coding LOC102006309 UDP-glucuronosyltransferase 1-8 NW_004955453 2386649 2547914 - 102006309 AGCD01044625;AGCD01044626;AGCD01044627;AGCD01044628;AGCD01044629;AGCD01044630;AGCD01044631;GBDI01068255;XM_005395338;XM_005395339;XM_005395340;XM_005395341;XM_013519894;XM_013519895;XM_013519897;XM_013519898 XP_005395395;XP_005395396;XP_005395397;XP_005395398;XP_013375348;XP_013375349;XP_013375351;XP_013375352 MODEL 8913888 protein-coding Nol4l nucleolar protein 4 like ASSOCIATED WITH immunodeficiency-centromeric instability-facial anomalies syndrome 1 (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955422 28575749 28658983 + 102004724 AGCD01023363;AGCD01023364;GBCE01024026;XM_013513842 XP_013369296 MODEL 9029747 pseudo LOC102003214 graves disease carrier protein pseudogene NW_004955459 10102037 10104221 + 102003214 AGCD01048180 MODEL 8985278 protein-coding Nsa2 NSA2 ribosome biogenesis factor ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); primary biliary cholangitis (ortholog); Sandhoff disease (ortholog) NW_004955425 25896849 25903869 - 102003156 AGCD01025939;GBDI01066288;XM_005386065 XP_005386122 MODEL 8984208 pseudo LOC102026157 actin-related protein 2/3 complex subunit 1A pseudogene NW_004955437 21870961 21871695 + 102026157 AGCD01034924 MODEL 153211018 protein-coding ZNF548 zinc finger protein 548 8971570 protein-coding Shoc1 shortage in chiasmata 1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN reciprocal meiotic recombination (ortholog); resolution of meiotic recombination intermediates (ortholog); synaptonemal complex assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); male infertility (ortholog); spermatogenic failure 75 (ortholog); FOUND IN chromosome (ortholog); condensed nuclear chromosome (ortholog) NW_004955419 15563949 15644502 + 102008317 AGCD01020083;AGCD01020084;GBDF01052150;XM_005382715;XM_005382716;XM_005382717 XP_005382772;XP_005382773;XP_005382774 MODEL 8792584 protein-coding Vsig10 V-set and immunoglobulin domain containing 10 NW_004955455 13270110 13304223 + 102019888 AGCD01046066;AGCD01046067;AGCD01046068;GBCE01024196;GBDJ01353478;XM_005396536 XP_005396593 MODEL 8701850 pseudo LOC102020532 olfactory receptor 6C74-like NW_004955458 2708299 2716739 + 102020532 AGCD01047240 MODEL 8924801 ncrna LOC102028860 uncharacterized LOC102028860 NW_004955482 996337 997740 - 102028860 AGCD01057197;GBDF01144568;XR_263815 MODEL 8732812 protein-coding Lbr lamin B receptor ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); chromo shadow domain binding (ortholog); Delta14-sterol reductase activity (ortholog); INVOLVED IN cholesterol biosynthetic process (ortholog); neutrophil differentiation (ortholog); random inactivation of X chromosome (ortholog); PARTICIPATES IN cholesterol biosynthetic pathway; histone modification pathway; ASSOCIATED WITH Anadysplasia-Like, Spontaneously Remitting Spondylometaphyseal Dysplasia (ortholog); asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog); fibrillar center (ortholog) NW_004955520 401733 418279 + 102006067 AGCD01068016;GBDF01125131;GBDF01125132;XM_013507049 XP_013362503 MODEL 8846884 protein-coding Usp8 ubiquitin specific peptidase 8 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); K48-linked deubiquitinase activity (ortholog); K63-linked deubiquitinase activity (ortholog); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); cellular response to nerve growth factor stimulus (ortholog); endosome organization (ortholog); PARTICIPATES IN mitochondrial autophagy pathway; ASSOCIATED WITH ACTH-secreting pituitary adenoma (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN acrosomal membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955409 3839308 3903595 - 102029712 AGCD01009263;AGCD01009264;AGCD01009265;GBDJ01188680;XM_005376668;XM_013510292 XP_005376725;XP_013365746 MODEL 8929032 ncrna LOC102026159 uncharacterized LOC102026159 NW_004955438 14506996 14509726 + 102026159 AGCD01035346;GBDF01194797;XR_261932 MODEL 8817817 pseudo LOC102003428 40S ribosomal protein S2 pseudogene NW_004955467 3259017 3259823 - 102003428 AGCD01051332 MODEL 8788461 protein-coding LOC102012855 vomeronasal type-1 receptor 90-like NW_004955414 15022049 15022963 - 102012855 AGCD01015170;XM_005380442 XP_005380499 MODEL 8989535 protein-coding Sbk3 SH3 domain binding kinase family member 3 NW_004955567 774343 778097 + 102019542 AGCD01074432;GBDI01036146;XM_005413308 XP_005413365 MODEL 8979781 protein-coding Znf548 zinc finger protein 548 NW_004955584 192161 216751 + 102008794 AGCD01075926;GBCQ01177115;XM_005414359;XM_013509861;XM_013509862;XM_013509863;XM_013509864 XP_005414416;XP_013365315;XP_013365316;XP_013365317;XP_013365318 MODEL 39132838 snrna U6 U6 spliceosomal RNA 8797367 pseudo LOC102003430 olfactory receptor 10J5-like NW_004955468 11314436 11315226 - 102003430 AGCD01052125 MODEL 8946650 ncrna LOC102022705 uncharacterized LOC102022705 NW_004955419 18376765 18384837 - 102022705 AGCD01020172;GBCE01062454;XR_001233557;XR_260642 MODEL 8915488 ncrna LOC102012860 uncharacterized LOC102012860 NW_004955418 16415786 16489113 - 102012860 AGCD01019124;GBDF01307770;XR_001233536;XR_260562;XR_260563 MODEL 10151725 ncrna LOC106149659 uncharacterized LOC106149659 NW_004955451 14406117 14407371 - 106149659 AGCD01043552;GBDK01125709;XR_001235972 MODEL 8918642 protein-coding LOC102024739 olfactory receptor 15-like NW_004955581 678582 685104 - 102024739 AGCD01075689;XM_013509728 XP_013365182 MODEL 39132840 snrna U6 U6 spliceosomal RNA 8757182 pseudo LOC102027176 DCN1-like protein 1 pseudogene NW_004955475 10519833 10520596 + 102027176 AGCD01055099 MODEL 8857503 protein-coding Mlip muscular LMNA interacting protein ENCODES a protein that exhibits lamin binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of cardiac muscle hypertrophy (ortholog); negative regulation of cardiac muscle hypertrophy in response to stress (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 64 (ortholog); genetic disease (ortholog); Myopathy with Myalgia, increased Serum Creatine Kinase, and with or without Episodic Rhabdomyolysis 1 (ortholog); FOUND IN nuclear envelope (ortholog); nuclear lumen (ortholog); nucleus (ortholog) NW_004955411 1852895 2100617 - 102006434 AGCD01011491;AGCD01011492;AGCD01011493;AGCD01011494;AGCD01011495;AGCD01011496;AGCD01011497;AGCD01011498;GBCB01001997;XM_005377591;XM_005377592;XM_005377593;XM_005377594;XM_005377595;XM_005377596;XM_005377597;XM_005377598;XM_005377599;XM_013510878;XM_013510879;XM_013510880;XM_013510882;XM_013510883 XP_005377648;XP_005377649;XP_005377650;XP_005377651;XP_005377652;XP_005377653;XP_005377654;XP_005377655;XP_005377656;XP_013366332;XP_013366333;XP_013366334;XP_013366336;XP_013366337 MODEL 9012822 pseudo LOC102021782 protein numb homolog pseudogene NW_004955425 17697019 17721168 + 102021782 AGCD01025645;AGCD01025646;AGCD01025647;AGCD01025648 MODEL 9005123 protein-coding LOC102024740 xin actin-binding repeat-containing protein 2-like NW_004955449 7054636 7060470 - 102024740 AGCD01041972;XM_005393430 XP_005393487 MODEL 39132841 snrna U6 U6 spliceosomal RNA 8971402 pseudo LOC102028862 heat shock 70 kDa protein 14 pseudogene NW_004955482 5978526 5979743 + 102028862 AGCD01057360 MODEL 10214215 ncrna LOC106147244 uncharacterized LOC106147244 NW_004955532 3692432 3695316 - 106147244 AGCD01070295;GBCB01111364;XR_001232027 MODEL 8994607 pseudo LOC102026160 dual specificity mitogen-activated protein kinase kinase 4 pseudogene NW_004955546 82780 83955 + 102026160 AGCD01071948 MODEL 9058231 ncrna LOC102024743 uncharacterized LOC102024743 NW_004955594 567771 572432 + 102024743 AGCD01076434;XR_265142 MODEL 8878290 protein-coding LOC102022150 olfactory receptor 19 NW_004955626 1451 5132 - 102022150 AGCD01077461;XM_005415023 XP_005415080 MODEL 8706521 protein-coding Lrrc14 leucine rich repeat containing 14 ENCODES a protein that exhibits kinase binding (ortholog); INVOLVED IN negative regulation of NF-kappaB transcription factor activity (ortholog); negative regulation of toll-like receptor signaling pathway (ortholog); ASSOCIATED WITH Baller-Gerold syndrome (ortholog); Recombinant Chromosome 8 Syndrome (ortholog); FOUND IN cytoplasm (ortholog) NW_004955454 3142621 3146470 + 102010226 AGCD01045057;GBDI01115994;XM_005395903;XM_005395907;XM_013520075;XM_013520076;XM_013520077;XM_013520078;XM_013520079;XM_013520080;XM_013520081;XM_013520082;XM_013520083 XP_005395960;XP_005395964;XP_013375529;XP_013375530;XP_013375531;XP_013375532;XP_013375533;XP_013375534;XP_013375535;XP_013375536;XP_013375537 MODEL 10164062 protein-coding LOC106147245 keratinocyte proline-rich protein-like NW_004955533 815951 820958 + 106147245 AGCD01070332;GBBH01177723;XM_013507669 XP_013363123 MODEL 8873584 pseudo LOC102006312 uncharacterized LOC102006312 NW_004955454 13491911 13530089 - 102006312 AGCD01045438;AGCD01045439;AGCD01045440;AGCD01045441;AGCD01045442;AGCD01045443;AGCD01045444 MODEL 8828174 protein-coding Slc19a1 solute carrier family 19 member 1 ENCODES a protein that exhibits 2',3'-cyclic GMP-AMP binding (ortholog); antiporter activity (ortholog); cyclic-GMP-AMP transmembrane transporter activity (ortholog); INVOLVED IN cyclic-GMP-AMP transmembrane import across plasma membrane (ortholog); female pregnancy (ortholog); folate import across plasma membrane (ortholog); PARTICIPATES IN folate cycle metabolic pathway; folate metabolic pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); acute lymphoblastic leukemia (ortholog); adenoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog) NW_004955407 42132216 42154252 - 102013801 AGCD01007885;GBBH01088077;XM_005375919;XM_005375920;XM_013505554;XM_013505559;XM_013505567;XM_013505573;XM_013505575;XM_013505579;XM_013505583;XM_013505590;XM_013505595;XM_013505600;XM_013505606;XM_013505612;XM_013505619;XM_013505628;XM_013505630;XM_013505636;XM_013505639;XM_013505642 XP_005375976;XP_005375977;XP_013361008;XP_013361013;XP_013361021;XP_013361027;XP_013361029;XP_013361033;XP_013361037;XP_013361044;XP_013361049;XP_013361054;XP_013361060;XP_013361066;XP_013361073;XP_013361082;XP_013361084;XP_013361090;XP_013361093;XP_013361096 MODEL 9053258 ncrna LOC102024747 uncharacterized LOC102024747 NW_004955403 33506635 33553903 + 102024747 AGCD01002456;GBDF01239295;XR_001233645;XR_001233646;XR_001233647;XR_001233648;XR_259223 MODEL 8872437 protein-coding Kpna4 karyopherin subunit alpha 4 ENCODES a protein that exhibits nuclear import signal receptor activity (ortholog); nuclear localization sequence binding (ortholog); INVOLVED IN dopamine secretion (ortholog); gene expression (ortholog); NLS-bearing protein import into nucleus (ortholog); FOUND IN cytoplasm (ortholog); male germ cell nucleus (ortholog); NLS-dependent protein nuclear import complex (ortholog) NW_004955448 11025095 11094053 - 102022982 AGCD01041510;AGCD01041511;AGCD01041512;AGCD01041513;GBBH01164753;GBCB01006548;XM_013518601 XP_013374055 MODEL 8736914 protein-coding Diaph2 diaphanous related formin 2 ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN actin filament polymerization (ortholog); axon midline choice point recognition (ortholog); ephrin receptor signaling pathway (ortholog); ASSOCIATED WITH amenorrhea (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN endoplasmic reticulum (ortholog); intracellular membrane-bounded organelle (ortholog); nucleolus (ortholog) NW_004955503 2324934 3132466 + 102018747 AGCD01064606;AGCD01064607;AGCD01064608;AGCD01064609;AGCD01064610;AGCD01064611;AGCD01064612;AGCD01064613;AGCD01064614;AGCD01064615;AGCD01064616;AGCD01064617;AGCD01064618;GBDI01105959;XM_013505853;XM_013505854 XP_013361307;XP_013361308 MODEL 8902060 ncrna LOC102027178 uncharacterized LOC102027178 NW_004955477 1342988 1354966 + 102027178 AGCD01055504;GBDF01113134;XR_263651 MODEL 8968225 protein-coding LOC102012862 2'-5'-oligoadenylate synthase 1-like NW_004955482 9327058 9336478 + 102012862 AGCD01057565;AGCD01081652;GBDI01244959;XM_005403208 XP_005403265 MODEL 8916717 protein-coding Ifrd1 interferon related developmental regulator 1 ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN adipose tissue development (ortholog); fat cell differentiation (ortholog); glial cell proliferation (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Charcot-Marie-Tooth disease (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); sarcoplasm (ortholog) NW_004955410 16176431 16222006 + 102015613 AGCD01010950;AGCD01010951;GBDK01098501;XM_005377320;XM_013510565;XM_013510566;XM_013510567 XP_005377377;XP_013366019;XP_013366020;XP_013366021 MODEL 9051791 protein-coding LOC102006314 keratin-associated protein 20-2-like NW_004955407 30126888 30127076 + 102006314 AGCD01007628;XM_005375638 XP_005375695 MODEL 10279165 protein-coding LOC106147246 leucine-rich repeat extensin-like protein 5 NW_004955533 3012041 3036020 + 106147246 AGCD01070404;AGCD01070405;GBDF01118847;XM_013507670;XM_013507671;XM_013507672;XM_013507673;XM_013507674;XM_013507675;XR_001232030 XP_013363124;XP_013363125;XP_013363126;XP_013363127;XP_013363128;XP_013363129 MODEL 8733200 pseudo LOC102024755 ribosomal L1 domain-containing protein 1 pseudogene NW_004955405 20401414 20402711 - 102024755 AGCD01005055 MODEL 9008811 protein-coding Rorc RAR related orphan receptor C ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN adipose tissue development (ortholog); alpha-beta T cell differentiation (ortholog); cell differentiation (ortholog); ASSOCIATED WITH advanced sleep phase syndrome (ortholog); Animal Toxoplasmosis (ortholog); bacterial pneumonia (ortholog); FOUND IN external side of plasma membrane (ortholog); nuclear body (ortholog); nucleus (ortholog) NW_004955589 590653 616784 + 102013889 AGCD01076177;AGCD01076178;AGCD01076179;GBDF01226139;GBDK01137332;XM_005414548 XP_005414605 MODEL 10134247 ncrna LOC106149519 uncharacterized LOC106149519 NW_004955448 8443021 8506502 + 106149519 AGCD01041445;AGCD01041446;GBCE01155952;XR_001235767 MODEL 8837384 protein-coding LOC102004985 olfactory receptor 7G2-like NW_004955563 363283 413390 - 102004985 AGCD01074063;AGCD01074064;AGCD01074065;AGCD01074066;XM_013509126 XP_013364580 MODEL 39133590 snrna U2 U2 spliceosomal RNA 8800992 protein-coding Lbx1 ladybird homeobox 1 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); INVOLVED IN cell population proliferation (ortholog); glutamatergic neuron differentiation (ortholog); heart looping (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Congenital Central Hypoventilation Syndrome 3 (ortholog); split hand-foot malformation (ortholog); FOUND IN transcription regulator complex (ortholog) NW_004955485 9003329 9005987 + 102028421 AGCD01058739;GBCB01021735;GBCQ01007298;XM_005403879 XP_005403936 MODEL 8848533 protein-coding Sec61g SEC61 translocon subunit gamma ENCODES a protein that exhibits phospholipid binding (ortholog); protein transmembrane transporter activity (ortholog); ribosome binding (ortholog); INVOLVED IN membrane docking (ortholog); protein targeting to ER (ortholog); ASSOCIATED WITH autistic disorder (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN membrane (ortholog); Sec61 translocon complex (ortholog) NW_004955456 645607 651764 + 102022883 AGCD01046211;AGCD01046212;GBDF01002701;XM_005396594 XP_005396651 MODEL 8975006 protein-coding Znf550 zinc finger protein 550 NW_004955584 283256 292723 + 102021927 AGCD01075932;AGCD01075933;GBCE01159856;GBCQ01152777;XM_013509876 XP_013365330 MODEL 8911090 ncrna LOC102004289 uncharacterized LOC102004289 NW_004955492 6522268 6526985 - 102004289 AGCD01060768;GBDF01157405;XR_264058 MODEL 10236020 protein-coding LOC106149520 galectin-3-like NW_004955448 2214227 2223090 - 106149520 AGCD01041280;GBDF01144457;XM_013518591 XP_013374045 MODEL 8807163 pseudo LOC102003433 heterogeneous nuclear ribonucleoprotein A1-like NW_004955469 9146985 9148365 + 102003433 AGCD01052493 MODEL 8931119 protein-coding Spn sialophorin ENCODES a protein that exhibits heat shock protein binding (ortholog); Hsp70 protein binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); cell surface receptor signaling pathway (ortholog); chronic inflammatory response (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); cleavage furrow (ortholog) NW_004955493 7256505 7258607 - 102010498 AGCD01061171;AGCD01061172;GBBH01003419;GBCE01185294;XM_013504779 XP_013360233 MODEL 8989724 protein-coding LOC102026164 zinc finger protein 83-like NW_004955558 143977 162063 - 102026164 AGCD01073345;GBCB01027560;XM_013508864;XM_013508865 XP_013364318;XP_013364319 MODEL 39133592 snrna U2 U2 spliceosomal RNA 8730256 protein-coding Yipf2 Yip1 domain family member 2 ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog); FOUND IN Golgi medial cisterna (ortholog); Golgi trans cisterna (ortholog); trans-Golgi network (ortholog) NW_004955495 2001458 2005880 - 102015214 AGCD01061744;GBCB01059650;XM_005405636;XM_013505171;XM_013505172;XM_013505173 XP_005405693;XP_013360625;XP_013360626;XP_013360627 MODEL 8728818 pseudo LOC102007808 T-complex protein 1 subunit delta pseudogene NW_004955434 3956987 3963609 + 102007808 AGCD01032151;AGCD01032152;XR_261648 MODEL 8964990 protein-coding LOC102022151 olfactory receptor 8B12-like NW_004956494 2419 3366 - 102022151 AGCD01079688;XM_005415202 XP_005415259 MODEL 8701279 protein-coding Sec62 SEC62 homolog, preprotein translocation factor INVOLVED IN post-translational protein targeting to endoplasmic reticulum membrane (ortholog); post-translational protein targeting to membrane, translocation (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 1 (ortholog); Fanconi-Bickel syndrome (ortholog); FOUND IN membrane (ortholog) NW_004955420 219909 247471 + 102015850 AGCD01020538;AGCD01020539;GBDI01002283;XM_005382962 XP_005383019 MODEL 10341839 ncrna LOC106149227 uncharacterized LOC106149227 NW_004955440 10523880 10538941 + 106149227 AGCD01036392;AGCD01036393;GBCQ01004775;XR_001235262 MODEL 8947028 protein-coding Gprin1 G protein regulated inducer of neurite outgrowth 1 ENCODES a protein that exhibits phosphoprotein binding (ortholog); INVOLVED IN neuron projection development (ortholog); ASSOCIATED WITH Chromosome 5, Trisomy 5q (ortholog); Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN plasma membrane (ortholog) NW_004955408 28871379 28884961 - 102014645 AGCD01008733;GBDF01067460;XM_005376391;XM_005376392;XM_005376393 XP_005376448;XP_005376449;XP_005376450 MODEL 8743130 ncrna LOC102020533 uncharacterized LOC102020533 NW_004955460 4920865 4924481 - 102020533 AGCD01048444;GBDF01304791;XR_263030 MODEL 8818974 ncrna LOC102021786 uncharacterized LOC102021786 NW_004955429 22132995 22153413 + 102021786 AGCD01029018;AGCD01029019;AGCD01029020;GBDI01041468;XR_001234463;XR_001234464;XR_001234465 MODEL 9008796 pseudo LOC102012863 FH1/FH2 domain-containing protein 1 pseudogene NW_004955485 3175160 3181031 - 102012863 AGCD01058533 MODEL 8875561 protein-coding Yipf3 Yip1 domain family member 3 ASSOCIATED WITH infantile Refsum disease (ortholog); renal cell carcinoma (ortholog); Zellweger syndrome (ortholog); FOUND IN Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog); transport vesicle (ortholog) NW_004955437 9342030 9346315 - 102010835 AGCD01034527;GBCE01029764;XM_005389778 XP_005389835 MODEL 8811268 protein-coding Spns1 SPNS lysolipid transporter 1, lysophospholipid INVOLVED IN lysophospholipid transport (ortholog); phospholipid efflux (ortholog); regulation of lysosomal lumen pH (ortholog); ASSOCIATED WITH Brody myopathy (ortholog); chromosome 16p11.2 deletion syndrome, 220-kb (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN lysosome (ortholog) NW_004955493 6506449 6514308 - 102011672 AGCD01061118;GBDF01086563;XM_005405152;XM_005405153 XP_005405209;XP_005405210 MODEL 8798018 ncrna LOC102027633 uncharacterized LOC102027633 NW_004955414 24978302 25056177 - 102027633 AGCD01015566;AGCD01015567;AGCD01015568;AGCD01015569;GBDF01013351;XR_001233119;XR_001233120;XR_001233121;XR_001233122;XR_001233123;XR_001233124;XR_001233125 MODEL 8786955 ncrna LOC102006319 uncharacterized LOC102006319 NW_004955460 7406510 7414067 - 102006319 AGCD01048481;XR_263037 MODEL 8962214 protein-coding LOC102021787 olfactory receptor 8K3-like NW_004955511 5111091 5112029 + 102021787 AGCD01066549;XM_013506405 XP_013361859 MODEL 8837464 protein-coding Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 ENCODES a protein that exhibits acetyltransferase activity (ortholog); L-lysine N-acetyltransferase activity, acting on acetyl phosphate as donor (ortholog); INVOLVED IN chromosome segregation (ortholog); double-strand break repair (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); genetic disease (ortholog); FOUND IN cell junction (ortholog); chromatin (ortholog); chromocenter (ortholog) NW_004955403 50306726 50328015 + 102008172 AGCD01002964;AGCD01002965;GBDF01190888;XM_005373754;XM_013514290 XP_005373811;XP_013369744 MODEL 8932876 ncrna LOC102022706 uncharacterized LOC102022706 NW_004955420 19784334 19808399 - 102022706 AGCD01021067;GBDI01299026;XR_260728 MODEL 39131296 protein-coding ZNF550 zinc finger protein 550 8967120 pseudo LOC102027634 integral membrane protein GPR137 pseudogene NW_004955471 12337303 12340251 + 102027634 AGCD01053288 MODEL 8723332 protein-coding Tfrc transferrin receptor ENCODES a protein that exhibits double-stranded RNA binding (ortholog); Hsp70 protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN acute-phase response (ortholog); cell surface receptor signaling pathway (ortholog); cellular response to leukemia inhibitory factor (ortholog); PARTICIPATES IN forkhead class A signaling pathway; hypoxia inducible factor pathway; iron uptake pathway; ASSOCIATED WITH Acute-Phase Reaction (ortholog); Arenaviridae infectious disease (ortholog); autism spectrum disorder (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); clathrin-coated pit (ortholog) NW_004955420 12348392 12372714 - 102008628 AGCD01020861;GBCB01056114;GBCQ01039332;XM_005383119 XP_005383176 MODEL 8937180 protein-coding LOC102023807 E3 ubiquitin-protein ligase TRIM38-like NW_004955483 1076890 1091510 + 102023807 AGCD01057639;AGCD01057640;GBCQ01174866;XM_013503772;XM_013503773 XP_013359226;XP_013359227 MODEL 8797368 protein-coding LOC102003434 olfactory receptor 51M1-like NW_004955414 21278585 21279689 + 102003434 AGCD01015411;XM_013511772 XP_013367226 MODEL 8726864 protein-coding Nfatc2 nuclear factor of activated T cells 2 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); calcineurin-NFAT signaling cascade (ortholog); cartilage development (ortholog); PARTICIPATES IN calcineurin signaling pathway; nuclear factor of activated T-cells signaling pathway; Wnt signaling, non-canonical pathway; ASSOCIATED WITH dilated cardiomyopathy 1A (ortholog); JOINT CONTRACTURES, OSTEOCHONDROMAS, AND B-CELL LYMPHOMA (ortholog); nervous system disease (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955445 7035876 7153199 + 102018867 AGCD01039533;AGCD01039534;GBCB01092874;GBDF01234651;XM_005392294 XP_005392351 MODEL 8768147 protein-coding Mlkl mixed lineage kinase domain like pseudokinase ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); protein kinase activity (ortholog); INVOLVED IN defense response to virus (ortholog); execution phase of necroptosis (ortholog); necroptotic process (ortholog); ASSOCIATED WITH biotinidase deficiency (ortholog); chronic recurrent multifocal osteomyelitis (ortholog); maturity-onset diabetes of the young (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955484 2793092 2819481 + 102029298 AGCD01058134;AGCD01058135;AGCD01058136;GBBH01076605;GBDJ01125607;XM_013503862 XP_013359316 MODEL 10337105 ncrna LOC106149228 uncharacterized LOC106149228 NW_004955440 10700753 10750432 + 106149228 AGCD01036396;AGCD01036397;GBCQ01131134;XR_001235263 MODEL 8951168 protein-coding Znf558 zinc finger protein 558 ASSOCIATED WITH autistic disorder (ortholog) NW_004955563 595546 619170 + 102005643 AGCD01074071;GBDF01254025;XM_005413105;XM_005413107;XM_013509185;XM_013509186;XM_013509187;XM_013509188;XM_013509189;XM_013509190;XM_013509191;XM_013509192;XM_013509193 XP_005413162;XP_005413164;XP_013364639;XP_013364640;XP_013364641;XP_013364642;XP_013364643;XP_013364644;XP_013364645;XP_013364646;XP_013364647 MODEL 8826876 pseudo LOC102023809 olfactory receptor 50-like NW_004955419 5546209 5547141 - 102023809 AGCD01019823;XM_005382923 MODEL 39132563 snrna U6 U6 spliceosomal RNA 8883599 protein-coding Usp9x ubiquitin specific peptidase 9 X-linked ENCODES a protein that exhibits co-SMAD binding (ortholog); cysteine-type deubiquitinase activity (ortholog); cysteine-type endopeptidase activity (ortholog); INVOLVED IN axon extension (ortholog); BMP signaling pathway (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Developmental Disabilities (ortholog); Developmental Disease (ortholog); FOUND IN apical part of cell (ortholog); centrosome (ortholog); cilium (ortholog) NW_004955565 1479040 1602070 - 102003704 AGCD01074324;AGCD01074325;AGCD01074326;AGCD01074327;AGCD01074328;GBDJ01278963;XM_005413264;XM_005413265;XM_005413266;XM_013509210 XP_005413321;XP_005413322;XP_005413323;XP_013364664 MODEL 9020125 protein-coding Sbno1 strawberry notch homolog 1 INVOLVED IN negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of MAPK cascade (ortholog); negative regulation of neuroinflammatory response (ortholog); ASSOCIATED WITH Knee Osteoarthritis (ortholog); prostate cancer (ortholog); schizophrenia (ortholog); FOUND IN nucleus (ortholog) NW_004955482 5519165 5571416 + 102018729 AGCD01057341;AGCD01057342;GBBH01177306;XM_005403039;XM_005403043;XM_005403045;XM_005403047;XM_013503552;XM_013503553;XM_013503554 XP_005403096;XP_005403100;XP_005403102;XP_005403104;XP_013359006;XP_013359007;XP_013359008 MODEL 8944536 protein-coding Sec63 SEC63 homolog, protein translocation regulator INVOLVED IN liver development (ortholog); nitrogen cycle metabolic process (ortholog); post-translational protein targeting to endoplasmic reticulum membrane (ortholog); ASSOCIATED WITH Autosomal Dominant Tubulointerstitial Kidney Disease 2 (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); membrane (ortholog) NW_004955411 33063056 33126325 - 102010137 AGCD01012343;AGCD01012344;GBDF01083376;XM_005377841 XP_005377898 MODEL 9020565 ncrna LOC102004986 uncharacterized LOC102004986 NW_004955445 2051400 2053337 + 102004986 AGCD01039349;GBDF01234218;XR_262295 MODEL 8794510 ncrna LOC102003217 uncharacterized LOC102003217 NW_004955410 22917245 22920183 + 102003217 AGCD01011087;GBDF01124788;XR_259857 MODEL 8981791 protein-coding Tnn tenascin N ENCODES a protein that exhibits identical protein binding (ortholog); integrin binding (ortholog); INVOLVED IN axonogenesis (ortholog); cell-matrix adhesion (ortholog); dendrite self-avoidance (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN CA3 pyramidal cell dendrite (ortholog); cell surface (ortholog); collagen-containing extracellular matrix (ortholog) NW_004955406 14882414 14950572 + 102015073 AGCD01005975;GBDI01261146;XM_005374897;XM_005374898;XM_013520939 XP_005374954;XP_005374955;XP_013376393 MODEL 8842992 protein-coding Nol6 nucleolar protein 6 INVOLVED IN ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ortholog); FOUND IN condensed nuclear chromosome (ortholog); mitochondrion (ortholog); nucleolus (ortholog) NW_004955472 2210490 2225275 + 102007542 AGCD01053444;AGCD01053445;GBCE01134698;GBCQ01070304;XM_013522948 XP_013378402 MODEL 8860125 protein-coding Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate ENCODES a protein that exhibits sphingolipid transporter activity (ortholog); INVOLVED IN B cell homeostasis (ortholog); bone development (ortholog); lipid transport (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 115 (ortholog); Hearing Loss (ortholog); sensorineural hearing loss (ortholog) NW_004955467 12405172 12441490 - 102012082 AGCD01051633;AGCD01051634;AGCD01051635;GBBH01187584;GBCQ01033750;XM_005399685;XM_013522148;XM_013522149 XP_005399742;XP_013377602;XP_013377603 MODEL 8728120 ncrna LOC102007448 uncharacterized LOC102007448 NW_004955426 3095664 3103993 - 102007448 AGCD01026065;GBDI01311716;XR_261183 MODEL 8754840 protein-coding Esd esterase D ENCODES a protein that exhibits hydrolase activity, acting on ester bonds (ortholog); identical protein binding (ortholog); ASSOCIATED WITH Hypoxia (ortholog); osteoarthritis (ortholog) NW_004955431 524491 551871 - 102010084 AGCD01029869;AGCD01029870;GBBH01065118;GBCB01022499;XM_013515897 XP_013371351 MODEL 8902778 protein-coding Vsig10l V-set and immunoglobulin domain containing 10 like ASSOCIATED WITH COVID-19 (ortholog); multiple acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955558 1049394 1058632 + 102006291 AGCD01073412;AGCD01073413;GBCC01019138;XM_005412745 XP_005412802 MODEL 8716878 pseudo LOC102016215 60S ribosomal protein L39 pseudogene NW_004955402 44397823 44398005 - 102016215 AGCD01001113;XM_005373008 MODEL 8855559 protein-coding Sbno2 strawberry notch homolog 2 INVOLVED IN bone mineralization (ortholog); bone trabecula morphogenesis (ortholog); cellular response to interleukin-11 (ortholog); ASSOCIATED WITH cerebral creatine deficiency syndrome (ortholog); cyclic hematopoiesis (ortholog); Peutz-Jeghers syndrome (ortholog) NW_004955495 6709190 6770816 + 102015737 AGCD01062089;AGCD01062090;AGCD01062091;GBDF01137090;GBDK01144604;XM_013505095 XP_013360549 MODEL 8844157 protein-coding LOC102017244 zinc finger protein 878-like NW_004955487 192974 209169 - 102017244 AGCD01059214;GBBH01045988;XM_013504335 XP_013359789 MODEL 8821926 protein-coding Slc19a2 solute carrier family 19 member 2 ENCODES a protein that exhibits thiamine transmembrane transporter activity (ortholog); INVOLVED IN pyridoxine transport (ortholog); spermatogenesis (ortholog); thiamine diphosphate biosynthetic process (ortholog); PARTICIPATES IN thiamine metabolic pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); chronic kidney disease (ortholog); Deafness (ortholog); FOUND IN plasma membrane (ortholog) NW_004955462 7786920 7804828 + 102012933 AGCD01049309;GBDF01308169;XM_005398189 XP_005398246 MODEL 39132843 snrna U6 U6 spliceosomal RNA 8877151 protein-coding Tat tyrosine aminotransferase ENCODES a protein that exhibits amino acid binding (ortholog); identical protein binding (ortholog); L-tyrosine-2-oxoglutarate transaminase activity (ortholog); INVOLVED IN 2-oxoglutarate metabolic process (ortholog); amino acid metabolic process (ortholog); cellular response to insulin stimulus (ortholog); PARTICIPATES IN alkaptonuria pathway; disulfiram pharmacodynamics pathway; dopamine beta-hydroxylase deficiency pathway; ASSOCIATED WITH alcohol withdrawal syndrome (ortholog); autosomal dominant dyskeratosis congenita 6 (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog) NW_004955484 4278083 4287535 - 102011994 AGCD01058206;GBDF01020940;XM_005403508;XM_005403509 XP_005403565;XP_005403566 MODEL 8793843 protein-coding LOC102007810 glutathione S-transferase Mu 2 NW_004955435 13099385 13175462 + 102007810 AGCD01033184;AGCD01033185;AGCD01033186;AGCD01033187;AGCD01033188;AGCD01033189;AGCD01033190;AGCD01033191;AGCD01033192;AGCD01033193;GBCE01002116;GBDI01010302;XM_005388888 XP_005388945 MODEL 8805472 protein-coding LOC102028868 uncharacterized LOC102028868 NW_004955491 4979280 4981120 - 102028868 AGCD01060466;GBDF01075831;XM_005404892 XP_005404949 MODEL 8804596 protein-coding LOC102024757 cytochrome P450 11B1, mitochondrial-like NW_004955454 1700541 1707716 + 102024757 AGCD01044978;GBDF01252880;XM_013520063 XP_013375517 MODEL 8991392 protein-coding Esf1 ESF1 nucleolar pre-rRNA processing protein homolog NW_004955415 23156521 23221027 - 102003229 AGCD01016551;AGCD01016552;GBCQ01150807;XM_005380886 XP_005380943 MODEL 39132844 snrna U6 U6 spliceosomal RNA 8903019 pseudo LOC102017245 sentrin-specific protease 6-like NW_004955422 15139959 15144979 - 102017245 AGCD01022876 MODEL 8926409 protein-coding Bnipl BCL2 interacting protein like ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN apoptotic process (ortholog); negative regulation of cell population proliferation (ortholog); regulation of growth rate (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955588 409509 417825 + 102021295 AGCD01076109;GBCC01012774;XM_005414480;XM_005414481;XM_005414482;XR_001232525 XP_005414537;XP_005414538;XP_005414539 MODEL 8980422 protein-coding Lbx2 ladybird homeobox 2 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); Methylmalonyl-CoA Epimerase Deficiency (ortholog) NW_004955424 11288897 11292143 + 102024928 AGCD01024561;GBDF01177258;XM_005385495 XP_005385552 MODEL 8730448 pseudo LOC102025184 vacuolar protein sorting-associated protein 45 pseudogene NW_004955443 208496 220334 + 102025184 AGCD01038092;AGCD01038093;AGCD01038094 MODEL 8798281 protein-coding Slc19a3 solute carrier family 19 member 3 ENCODES a protein that exhibits thiamine transmembrane transporter activity (ortholog); INVOLVED IN pyridoxine transport (ortholog); thiamine diphosphate biosynthetic process (ortholog); thiamine transmembrane transport (ortholog); ASSOCIATED WITH basal ganglia disease (ortholog); biotin-responsive basal ganglia disease (ortholog); chronic kidney disease (ortholog); FOUND IN plasma membrane (ortholog) NW_004955453 6935372 6957808 + 102007731 AGCD01044734;GBDF01196023;XM_005395442;XM_013519971;XM_013519972;XM_013519973;XM_013519974;XM_013519975;XM_013519976;XM_013519977;XM_013519978 XP_005395499;XP_013375425;XP_013375426;XP_013375427;XP_013375428;XP_013375429;XP_013375430;XP_013375431;XP_013375432 MODEL 8858898 pseudo LOC102023107 corepressor interacting with RBPJ 1 pseudogene NW_004955405 17684218 17787002 - 102023107 AGCD01005002;AGCD01005003;AGCD01005004;AGCD01005005;AGCD01005006;AGCD01005007;AGCD01005008 MODEL 8869370 protein-coding LOC102006320 TERF1-interacting nuclear factor 2 NW_004955409 36120339 36165515 + 102006320 AGCD01010445;AGCD01010446;AGCD01010447;AGCD01010448;AGCD01010449;AGCD01010450;GBDF01003589;XM_005377026;XM_005377027;XM_013510401 XP_005377083;XP_005377084;XP_013365855 MODEL 10379234 protein-coding Znf565 zinc finger protein 565 ASSOCIATED WITH schizophrenia (ortholog) NW_004955468 2409858 2428153 + 106146323 AGCD01051815;AGCD01051816;GBDK01414755;XM_013522321;XM_013522322 XP_013377775;XP_013377776 MODEL 8861544 protein-coding Shoc2 SHOC2 leucine rich repeat scaffold protein ENCODES a protein that exhibits protein phosphatase 1 binding (ortholog); protein phosphatase binding (ortholog); INVOLVED IN cellular response to growth hormone stimulus (ortholog); negative regulation of neural precursor cell proliferation (ortholog); negative regulation of neuron differentiation (ortholog); ASSOCIATED WITH atopic dermatitis (ortholog); combined immunodeficiency (ortholog); combined T cell and B cell immunodeficiency (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955485 430493 517767 - 102012201 AGCD01058447;AGCD01058448;AGCD01058449;AGCD01058450;AGCD01058451;GBDJ01177936;XM_005403740;XM_005403743;XM_005403744;XM_013504084;XM_013504085 XP_005403797;XP_005403800;XP_005403801;XP_013359538;XP_013359539 MODEL 8932235 protein-coding Kpna5 karyopherin subunit alpha 5 ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog) NW_004955436 48880 102447 + 102006606 AGCD01033530;AGCD01033531;GBDF01100155;XM_005389117;XM_013516686 XP_005389174;XP_013372140 MODEL 8710272 protein-coding Ifrd2 interferon related developmental regulator 2 ENCODES a protein that exhibits ribosome binding (ortholog); translation repressor activity (ortholog); INVOLVED IN adipose tissue development (ortholog); fat cell differentiation (ortholog); negative regulation of translation (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog) NW_004955532 2101202 2106779 - 102028796 AGCD01070216;AGCD01070217;GBCB01001546;XM_005410255 XP_005410312 MODEL 8778371 protein-coding Spns3 SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative) NW_004955467 12447232 12496874 - 102013403 AGCD01051636;GBDJ01304343;XM_005399690;XM_013522150;XM_013522151 XP_005399747;XP_013377604;XP_013377605 MODEL 8730101 ncrna LOC102007453 uncharacterized LOC102007453 NW_004955510 4663031 4720789 - 102007453 AGCD01066268;AGCD01066269;AGCD01066270;GBDF01122818;XR_001231663;XR_001231664;XR_264408 MODEL 8935052 protein-coding LOC102027180 angiotensin-converting enzyme-like NW_004955478 8264799 8276647 - 102027180 AGCD01056017;GBDF01043240;XM_005402212;XM_005402214;XM_013503170;XM_013503171 XP_005402269;XP_005402271;XP_013358624;XP_013358625 MODEL 8994900 ncrna LOC102008932 uncharacterized LOC102008932 NW_004955468 2457664 2458509 + 102008932 AGCD01051818;GBDK01424972;XR_263377 MODEL 8975448 protein-coding LOC102012865 olfactory receptor 4C12-like NW_004955422 140434 143718 - 102012865 AGCD01022395;XM_005383937 XP_005383994 MODEL 8790965 pseudo LOC102028870 uncharacterized protein C11orf57 pseudogene NW_004955422 26235914 26236773 - 102028870 AGCD01023283 MODEL 8776986 protein-coding Yipf4 Yip1 domain family member 4 ASSOCIATED WITH hereditary spastic paraplegia 4 (ortholog); paraplegia (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955441 622401 655035 + 102009322 AGCD01036718;AGCD01036719;AGCD01036720;AGCD01036721;GBCB01040630;GBCE01055763;XM_013517616 XP_013373070 MODEL 8727424 protein-coding Tatdn1 TatD DNase domain containing 1 ASSOCIATED WITH hepatocellular carcinoma (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955540 3154273 3198140 - 102008147 AGCD01071335;AGCD01071336;GBBH01177239;XM_013507914;XM_013507915;XM_013507917;XR_001232123;XR_001232124;XR_001232125;XR_001232126 XP_013363368;XP_013363369;XP_013363371 MODEL 8950384 pseudo LOC102023810 cell growth-regulating nucleolar protein pseudogene NW_004955485 8393270 8394886 - 102023810 AGCD01058712 MODEL 8723073 ncrna LOC102027181 uncharacterized LOC102027181 NW_004955416 25520733 25572764 - 102027181 AGCD01017588;AGCD01017589;GBDF01075796;XR_001233375;XR_001233376;XR_260422 MODEL 8776538 protein-coding Lrrc14b leucine rich repeat containing 14B NW_004955504 9559 13238 + 102016826 AGCD01064813;GBDF01145974;XM_005406982 XP_005407039 MODEL 8848356 protein-coding Secisbp2 SECIS binding protein 2 ENCODES a protein that exhibits DNA binding (ortholog); mRNA 3'-UTR binding (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN forebrain neuron development (ortholog); mRNA stabilization (ortholog); negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); ASSOCIATED WITH Abnormal Thyroid Hormone Metabolism 1 (ortholog); amino acid metabolic disorder (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog); ribonucleoprotein complex (ortholog) NW_004955515 2697370 2729425 - 102017046 AGCD01067259;AGCD01067260;GBDF01079974;XM_005408879;XM_013506887;XM_013506888 XP_005408936;XP_013362341;XP_013362342 MODEL 8826804 protein-coding Uspl1 ubiquitin specific peptidase like 1 ENCODES a protein that exhibits deSUMOylase activity (ortholog); SUMO binding (ortholog); ubiquitin binding (ortholog); INVOLVED IN blastocyst formation (ortholog); Cajal body organization (ortholog); cell population proliferation (ortholog); FOUND IN Cajal body (ortholog) NW_004955431 15173448 15212443 - 102020476 AGCD01030347;AGCD01030348;GBBH01036768;XM_005387742;XM_013515876;XM_013515877 XP_005387799;XP_013371330;XP_013371331 MODEL 8794738 pseudo LOC102012868 ubiquitin-like modifier-activating enzyme 1 pseudogene NW_004955494 8277150 8278221 - 102012868 AGCD01061582 MODEL 8720711 pseudo LOC102026166 T-complex protein 1 subunit alpha-like NW_004955443 18350075 18354651 + 102026166 AGCD01038597 MODEL 8781192 protein-coding LOC102004988 boophilin-H2-like NW_004955445 11800937 11812508 - 102004988 AGCD01039717;GBCE01062671;XM_005392424 XP_005392481 MODEL 8758065 protein-coding Diaph3 diaphanous related formin 3 ENCODES a protein that exhibits actin binding (ortholog); cytoskeletal protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN actin crosslink formation (ortholog); actin cytoskeleton organization (ortholog); actin filament bundle assembly (ortholog); ASSOCIATED WITH autosomal dominant auditory neuropathy 1 (ortholog); chromosome 13q14 deletion syndrome (ortholog); congenital dyserythropoietic anemia (ortholog); FOUND IN actin filament bundle (ortholog); cleavage furrow (ortholog); cytoplasm (ortholog) NW_004955404 44653308 45106943 + 102005884 AGCD01004425;AGCD01004426;AGCD01004427;AGCD01004428;AGCD01004429;AGCD01004430;AGCD01004431;AGCD01004432;AGCD01004433;AGCD01004434;AGCD01004435;AGCD01004436;AGCD01004437;GBDF01248888;XM_005374208 XP_005374265 MODEL 8710200 protein-coding LOC102025187 zinc finger protein 709-like NW_004955569 27899 63427 + 102025187 AGCD01074557;AGCD01074558;GBCE01006195;XM_005413488 XP_005413545 MODEL 8927285 ncrna LOC102006322 uncharacterized LOC102006322 NW_004955463 8147644 8156564 - 102006322 AGCD01049756;GBDF01286788;XR_263161 MODEL 8938883 protein-coding Gprin2 G protein regulated inducer of neurite outgrowth 2 ASSOCIATED WITH schizophrenia (ortholog) NW_004955510 6141516 6155372 + 102014592 AGCD01066302;AGCD01066303;GBCE01107160;XM_005407914;XM_005407915;XM_005407916;XM_005407917;XM_013506342;XM_013506343;XM_013506344 XP_005407971;XP_005407972;XP_005407973;XP_005407974;XP_013361796;XP_013361797;XP_013361798 MODEL 8981871 protein-coding LOC102016216 late cornified envelope protein 3B-like NW_004955592 850418 870805 + 102016216 AGCD01076331;AGCD01076332;AGCD01076333;GBDI01000487;XM_005414627;XM_013509980 XP_005414684;XP_013365434 MODEL 8954226 pseudo LOC102003435 olfactory receptor 2AG2-like NW_004955414 22564831 22565788 - 102003435 AGCD01015463 MODEL 10336153 protein-coding Vsig10l2 V-set and immunoglobulin domain containing 10 like 2 ASSOCIATED WITH schizophrenia (ortholog) NW_004955412 26994888 27002917 + 106147861 AGCD01013225;GBDF01029840;XM_013510982 XP_013366436 MODEL 8933351 protein-coding Sbsn suprabasin ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955468 4746856 4751722 - 102020791 AGCD01051919;AGCD01051920;AGCD01051921;GBCC01000141;XM_013522549;XM_013522550 XP_013378003;XP_013378004 MODEL 8829544 protein-coding Ppp6r1 protein phosphatase 6 regulatory subunit 1 ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); small GTPase binding (ortholog); ASSOCIATED WITH hypertrophic cardiomyopathy (ortholog); nemaline myopathy 5A (ortholog); FOUND IN cytosol (ortholog) NW_004955567 966483 985692 + 102030486 AGCD01074450;GBCQ01065625;XM_013509240;XM_013509241;XM_013509242 XP_013364694;XP_013364695;XP_013364696 MODEL 10322096 ncrna LOC106149660 uncharacterized LOC106149660 NW_004955451 16761318 16763170 + 106149660 AGCD01043704;GBDF01023497;XR_001235974 MODEL 8940048 ncrna LOC102004290 uncharacterized LOC102004290 NW_004955493 4019353 4020906 - 102004290 AGCD01061023;GBDF01277572;XR_264081 MODEL 8799146 protein-coding Ift122 intraflagellar transport 122 INVOLVED IN camera-type eye morphogenesis (ortholog); cilium assembly (ortholog); dorsal/ventral pattern formation (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); Cardiac Edema (ortholog); Ciliary Motility Disorders (ortholog); FOUND IN ciliary basal body (ortholog); ciliary base (ortholog); cilium (ortholog) NW_004955429 17795757 17858609 - 102013526 AGCD01028867;AGCD01028868;GBDF01044513;XM_005387088;XM_005387089;XM_005387090 XP_005387145;XP_005387146;XP_005387147 MODEL 39132846 snrna U6 U6 spliceosomal RNA 39133594 snrna U2 U2 spliceosomal RNA 8957589 protein-coding LOC102022711 cardiotrophin-2 NW_004955493 7741380 7747696 - 102022711 AGCD01061223;GBDI01041162;XM_005405279 XP_005405336 MODEL 8985945 ncrna LOC102027640 uncharacterized LOC102027640 NW_004955417 20938383 20988002 - 102027640 AGCD01018388;GBDI01368402;XR_001233472;XR_260486 MODEL 9001101 protein-coding Esm1 endothelial cell specific molecule 1 ENCODES a protein that exhibits hepatocyte growth factor receptor binding (ortholog); integrin binding (ortholog); INVOLVED IN angiogenesis (ortholog); positive regulation of cell population proliferation (ortholog); positive regulation of hepatocyte growth factor receptor signaling pathway (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Liver Neoplasms (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955446 12644220 12665351 + 102021812 AGCD01040239;GBBH01086228;XM_005392712 XP_005392769 MODEL 8858850 protein-coding LOC102022152 keratin-associated protein 9-3-like NW_004955451 15443373 15444392 - 102022152 AGCD01043607;XM_005394381 XP_005394438 MODEL 10237280 ncrna LOC106149661 uncharacterized LOC106149661 NW_004955451 5281160 5295524 + 106149661 AGCD01043166;GBDF01234536;XR_001235975 MODEL 8996803 protein-coding LOC102023812 isopentenyl-diphosphate Delta-isomerase 1 NW_004955421 30172959 30177180 + 102023812 AGCD01022383;GBCQ01067273;GBDF01051865;XM_005383912 XP_005383969 MODEL 9027402 protein-coding Tnnc1 troponin C1, slow skeletal and cardiac type ENCODES a protein that exhibits actin filament binding (ortholog); calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN cardiac muscle contraction (ortholog); diaphragm contraction (ortholog); regulation of ATP-dependent activity (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH cardiomyopathy (ortholog); congenital disorder of glycosylation In (ortholog); dilated cardiomyopathy (ortholog); FOUND IN cardiac Troponin complex (ortholog); contractile muscle fiber (ortholog); troponin complex (ortholog) NW_004955430 2438644 2441596 - 102017148 AGCD01029166;GBDJ01349702;XM_005387319 XP_005387376 MODEL 39132847 snrna U6 U6 spliceosomal RNA 8960992 protein-coding Lrrc15 leucine rich repeat containing 15 ENCODES a protein that exhibits collagen binding (ortholog); fibronectin binding (ortholog); laminin binding (ortholog); INVOLVED IN host-mediated suppression of symbiont invasion (ortholog); negative regulation of protein localization to plasma membrane (ortholog); positive regulation of cell migration (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); collagen-containing extracellular matrix (ortholog) NW_004955420 14401080 14410277 + 102030318 AGCD01020944;GBDJ01246683;XM_005383195;XM_005383196 XP_005383252;XP_005383253 MODEL 8881627 protein-coding LOC102027182 solute carrier family 7 member 13-like NW_004955417 2901641 2937371 + 102027182 AGCD01017896;AGCD01017897;GBCQ01002365;XM_005381728;XM_005381729;XM_005381730;XM_005381732;XM_013512794;XM_013512795 XP_005381785;XP_005381786;XP_005381787;XP_005381789;XP_013368248;XP_013368249 MODEL 8807031 pseudo LOC102026168 40S ribosomal protein S8 pseudogene NW_004955444 16578183 16578870 - 102026168 AGCD01039178 MODEL 10288267 protein-coding LOC106149229 uncharacterized LOC106149229 NW_004955440 16825196 16836806 - 106149229 AGCD01036533;GBDJ01220631;XM_013517493 XP_013372947 MODEL 8747472 protein-coding LOC102006323 testis-specific Y-encoded-like protein 1 NW_004955464 13241650 13244996 - 102006323 AGCD01050265;XM_013521580 XP_013377034 MODEL 8815650 pseudo LOC102007454 60 kDa heat shock protein, mitochondrial pseudogene NW_004955429 3122832 3124566 - 102007454 AGCD01028458 MODEL 8850929 protein-coding Dicer1 dicer 1, ribonuclease III ENCODES a protein that exhibits double-stranded RNA binding (ortholog); miRNA binding (ortholog); pre-miRNA binding (ortholog); INVOLVED IN angiogenesis (ortholog); branching morphogenesis of an epithelial tube (ortholog); cardiac muscle cell development (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH breast cancer (ortholog); Breast Neoplasms (ortholog); childhood kidney cell carcinoma (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955438 17374899 17431599 + 102018859 AGCD01035441;GBCQ01012900;XM_013517206 XP_013372660 MODEL 8740818 pseudo LOC102003437 probable asparagine--tRNA ligase, mitochondrial pseudogene NW_004955414 18585477 18586305 + 102003437 AGCD01015285 MODEL 8947406 protein-coding Spo11 SPO11 initiator of meiotic double strand breaks INVOLVED IN double-strand break repair involved in meiotic recombination (ortholog); homologous chromosome pairing at meiosis (ortholog); male meiosis I (ortholog); ASSOCIATED WITH spermatogenic failure 3 (ortholog); FOUND IN chromosome, telomeric region (ortholog) NW_004955445 2088144 2103385 - 102005521 AGCD01039350;GBDF01277074;XM_005392256;XM_005392257;XM_005392258;XM_005392259;XM_013518307;XM_013518308 XP_005392313;XP_005392314;XP_005392315;XP_005392316;XP_013373761;XP_013373762 MODEL 8892193 protein-coding Sbspon somatomedin B and thrombospondin type 1 domain containing ASSOCIATED WITH Hepatomegaly (ortholog) NW_004955444 7068906 7094583 + 102011369 AGCD01038889;AGCD01038890;GBCQ01098259;XM_013518221 XP_013373675 MODEL 8935516 protein-coding LOC102028871 zinc finger protein 709-like NW_004955495 2451976 2461016 - 102028871 AGCD01061776;GBCE01185389;XM_005405680 XP_005405737 MODEL 8727541 protein-coding Vsig2 V-set and immunoglobulin domain containing 2 ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); holoprosencephaly 11 (ortholog) NW_004955412 25818501 25823393 - 102013400 AGCD01013174;GBBH01046285;XM_005378438;XM_005378441 XP_005378495;XP_005378498 MODEL 8720662 protein-coding Yipf5 Yip1 domain family member 5 INVOLVED IN Golgi organization (ortholog); insulin processing (ortholog); regulation of ER to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Microcephaly, Epilepsy, and Diabetes Syndrome 2 (ortholog); FOUND IN COPII-coated ER to Golgi transport vesicle (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955415 9795214 9809871 + 102021548 AGCD01016110;GBDF01085610;XM_005380690 XP_005380747 MODEL 8851310 ncrna LOC102003439 uncharacterized LOC102003439 NW_004955415 12033874 12040445 - 102003439 AGCD01016183;GBDF01015290;XR_001233199 MODEL 8892558 protein-coding Slc1a1 solute carrier family 1 member 1 ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); cysteine transmembrane transporter activity (ortholog); D-aspartate transmembrane transporter activity (ortholog); INVOLVED IN activation of protein kinase B activity (ortholog); adult behavior (ortholog); behavioral fear response (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH Atrophy (ortholog); autism spectrum disorder (ortholog); brain disease (ortholog); FOUND IN apical dendrite (ortholog); apical plasma membrane (ortholog); asymmetric synapse (ortholog) NW_004955434 8790685 8879757 + 102024270 AGCD01032276;AGCD01032277;AGCD01032278;GBCE01069636;XM_005388636 XP_005388693 MODEL 8994134 protein-coding Tg thyroglobulin ENCODES a protein that exhibits anion binding (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cellular response to genistein (ortholog); iodide transport (ortholog); regulation of myelination (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH alcoholic liver cirrhosis (ortholog); Animal Disease Models (ortholog); anxiety disorder (ortholog); FOUND IN extracellular space (ortholog); perinuclear region of cytoplasm (ortholog); protein-containing complex (ortholog) NW_004955461 7487268 7703458 + 102014754 AGCD01048919;AGCD01048920;AGCD01048921;GBDI01018076;XM_005398023 XP_005398080 MODEL 8887921 ncrna LOC102004989 uncharacterized LOC102004989 NW_004955445 15824960 15826502 + 102004989 AGCD01039857;GBDF01080622;XR_262340 MODEL 8900043 protein-coding Nfatc2ip nuclear factor of activated T cells 2 interacting protein INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Brody myopathy (ortholog); chromosome 16p11.2 deletion syndrome, 220-kb (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog) NW_004955493 6522604 6527999 - 102012444 AGCD01061118;GBDF01119405;GBDF01119407;XM_005405155 XP_005405212 MODEL 8855730 ncrna LOC102024761 uncharacterized LOC102024761 NW_004955407 5348784 5427121 + 102024761 AGCD01006913;AGCD01006914;GBBH01027179;XR_001230977;XR_001230981;XR_001230983;XR_259551 MODEL 8857905 protein-coding Nsd1 nuclear receptor binding SET domain protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); histone H3K36 methyltransferase activity (ortholog); histone H4K20 methyltransferase activity (ortholog); INVOLVED IN gastrulation with mouth forming second (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); adenoid cystic carcinoma (ortholog); autistic disorder (ortholog); FOUND IN nucleus (ortholog) NW_004955408 29416393 29547444 + 102021209 AGCD01008756;AGCD01008757;AGCD01008758;AGCD01008759;AGCD01008760;AGCD01008761;AGCD01008762;GBCE01136761;XM_013509737;XM_013509739 XP_013365191;XP_013365193 MODEL 8979945 protein-coding Yipf6 Yip1 domain family member 6 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN intestinal epithelial cell development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN cis-Golgi network (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); endoplasmic reticulum (ortholog) NW_004955475 8085017 8101624 + 102013714 AGCD01055030;GBDF01158849;XM_005401586;XM_013502880 XP_005401643;XP_013358334 MODEL 9005158 ncrna LOC102027183 uncharacterized LOC102027183 NW_004955480 1028040 1061650 - 102027183 AGCD01056590;XR_263741 MODEL 8891591 protein-coding Mllt1 MLLT1 super elongation complex subunit INVOLVED IN negative regulation of protein kinase activity (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH Hypertelorism (ortholog); nephroblastoma (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955495 3289644 3336455 + 102016170 AGCD01061847;AGCD01061848;GBBH01064983;GBCB01043133;XM_013505340 XP_013360794 MODEL 8713997 protein-coding Slc1a2 solute carrier family 1 member 2 ENCODES a protein that exhibits cysteine transmembrane transporter activity (ortholog); glutamate:sodium symporter activity (ortholog); high-affinity L-glutamate transmembrane transporter activity (ortholog); INVOLVED IN adult behavior (ortholog); cellular response to cocaine (ortholog); D-aspartate import across plasma membrane (ortholog); PARTICIPATES IN amyotrophic lateral sclerosis pathway; ASSOCIATED WITH alcohol use disorder (ortholog); Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN astrocyte projection (ortholog); axolemma (ortholog); axon (ortholog) NW_004955422 10929987 11082220 + 102009619 AGCD01022749;GBDK01332009;XM_005384124;XM_005384125;XM_013514335 XP_005384181;XP_005384182;XP_013369789 MODEL 8760570 protein-coding Lrrc17 leucine rich repeat containing 17 INVOLVED IN bone marrow development (ortholog); negative regulation of osteoclast differentiation (ortholog); osteoblast differentiation (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN extracellular space (ortholog) NW_004955410 8093621 8128623 + 102013149 AGCD01010733;GBCE01096496;XM_005377215;XM_013510520 XP_005377272;XP_013365974 MODEL 8815670 protein-coding Lca5 lebercilin LCA5 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN intraciliary transport (ortholog); photoreceptor cell maintenance (ortholog); ASSOCIATED WITH blindness (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN axoneme (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955502 7325650 7373641 - 102008241 AGCD01064440;AGCD01064441;GBDI01325151;XM_013505843 XP_013361297 MODEL 8835262 ncrna LOC102007455 uncharacterized LOC102007455 NW_004955512 5582577 5590157 - 102007455 AGCD01066771;GBDF01177427;XR_264450 MODEL 8873941 pseudo LOC102020535 ribonucleoside-diphosphate reductase subunit M2-like NW_004955460 10653679 10657934 - 102020535 AGCD01048599 MODEL 10095753 ncrna LOC106147247 uncharacterized LOC106147247 NW_004955533 1054741 1057560 - 106147247 AGCD01070337;GBDF01162316;XR_001232033 MODEL 39133595 snrna U2 U2 spliceosomal RNA 8736183 ncrna LOC102028872 uncharacterized LOC102028872 NW_004955495 3905711 3913792 + 102028872 AGCD01061887;GBDF01222743;XR_264147;XR_264148 MODEL 9021449 protein-coding Lca5l lebercilin LCA5 like ASSOCIATED WITH autistic disorder (ortholog) NW_004955407 38176533 38220781 - 102020088 AGCD01007798;AGCD01007799;GBBH01037007;GBDF01048282;XM_013504856;XM_013504861;XM_013504865 XP_013360310;XP_013360315;XP_013360319 MODEL 8796034 protein-coding Shox SHOX homeobox ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); connective tissue disease (ortholog); Langer Mesomelic Dysplasia (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955499 716476 725455 + 102005614 AGCD01063271;GBCB01029721;XM_005406505 XP_005406562 MODEL 8930294 ncrna LOC102023813 uncharacterized LOC102023813 NW_004955494 3319129 3324144 + 102023813 AGCD01061470;GBCQ01014948;XR_264109 MODEL 8919803 protein-coding Kpna6 karyopherin subunit alpha 6 ENCODES a protein that exhibits nuclear import signal receptor activity (ortholog); INVOLVED IN entry of viral genome into host nucleus through nuclear pore complex via importin (ortholog); maternal process involved in female pregnancy (ortholog); positive regulation of cytokine production involved in inflammatory response (ortholog); FOUND IN NLS-dependent protein nuclear import complex (ortholog) NW_004955452 10493025 10542898 + 102015171 AGCD01044277;AGCD01044278;AGCD01044279;GBBH01203191;XM_005395041;XM_005395042 XP_005395098;XP_005395099 MODEL 8729461 protein-coding LOC102008935 tripartite motif-containing protein 5-like NW_004955414 21565273 21579442 - 102008935 AGCD01015423;GBDI01215630;XM_013512005;XM_013512006 XP_013367459;XP_013367460 MODEL 8827423 protein-coding LOC102021788 major urinary protein-like NW_004955513 4818849 4823574 - 102021788 AGCD01066940;GBDK01223614;XM_005408549 XP_005408606 MODEL 9040196 protein-coding LOC102004990 zinc finger protein 14-like NW_004955569 1305100 1342506 - 102004990 AGCD01074646;AGCD01074647;AGCD01074648;AGCD01074649;GBDI01011400;XM_013509371 XP_013364825 MODEL 8821664 protein-coding LOC102026169 ice-structuring glycoprotein-like NW_004955447 2567337 2575035 - 102026169 AGCD01040547;AGCD01040548;GBBH01107260;XM_005392788 XP_005392845 MODEL 10180643 ncrna LOC106149230 uncharacterized LOC106149230 NW_004955440 19802918 19817629 - 106149230 AGCD01036645;GBBH01210632;XR_001235275 MODEL 8973290 pseudo LOC102017246 protein slowmo homolog 2-like NW_004955492 8620255 8620892 - 102017246 AGCD01060822 MODEL 8704490 protein-coding Lcat lecithin-cholesterol acyltransferase ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); apolipoprotein A-I binding (ortholog); phosphatidylcholine-sterol O-acyltransferase activity (ortholog); INVOLVED IN aflatoxin metabolic process (ortholog); cholesterol homeostasis (ortholog); cholesterol metabolic process (ortholog); PARTICIPATES IN reverse cholesterol transport pathway; ASSOCIATED WITH arteriosclerosis (ortholog); autosomal dominant dyskeratosis congenita 6 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN extracellular space (ortholog); high-density lipoprotein particle (ortholog) NW_004955484 8772692 8776122 + 102017239 AGCD01058396;GBDF01235122;XM_005403602;XM_013503882 XP_005403659;XP_013359336 MODEL 8924399 protein-coding Boc BOC cell adhesion associated, oncogene regulated INVOLVED IN axon guidance (ortholog); cell projection organization (ortholog); positive regulation of myoblast differentiation (ortholog); PARTICIPATES IN altered Hedgehog signaling pathway; Hedgehog signaling pathway; pancreatic cancer pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); gastrointestinal stromal tumor (ortholog); holoprosencephaly (ortholog); FOUND IN axon (ortholog); axonal growth cone (ortholog); growth cone (ortholog) NW_004955427 13424478 13492527 + 102003160 AGCD01027249;AGCD01027250;AGCD01027251;GBDJ01189062;XM_005386397;XM_005386398;XM_013515110;XM_013515111;XM_013515112 XP_005386454;XP_005386455;XP_013370564;XP_013370565;XP_013370566 MODEL 8806214 protein-coding Ppp6r2 protein phosphatase 6 regulatory subunit 2 ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Charcot-Marie-Tooth disease type 4B3 (ortholog); chromosome 22q13 duplication syndrome (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); cytosol (ortholog) NW_004955413 33362879 33425361 + 102026310 AGCD01014666;AGCD01014667;AGCD01014668;AGCD01014669;GBCB01002220;XM_005379557;XM_005379558;XM_005379559;XM_005379560;XM_005379561;XM_013511403;XM_013511404;XM_013511405;XM_013511406;XM_013511407 XP_005379614;XP_005379615;XP_005379616;XP_005379617;XP_005379618;XP_013366857;XP_013366858;XP_013366859;XP_013366860;XP_013366861 MODEL 8806961 ncrna LOC102023108 uncharacterized LOC102023108 NW_004955453 16715278 16718568 + 102023108 AGCD01044910;GBDF01285863;XR_262757 MODEL 39131517 protein-coding ZNF566 zinc finger protein 566 8887386 protein-coding Spocd1 SPOC domain containing 1 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN gene silencing by piRNA-directed DNA methylation (ortholog); spermatogenesis (ortholog); transposable element silencing by piRNA-mediated DNA methylation (ortholog); ASSOCIATED WITH spermatogenic failure 57 (ortholog); FOUND IN nucleus (ortholog) NW_004955452 10192076 10214914 - 102020976 AGCD01044270;AGCD01044271;GBDF01184512;XM_013519461 XP_013374915 MODEL 8809794 protein-coding Secisbp2l SECIS binding protein 2 like ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Lung Neoplasms (ortholog) NW_004955409 4926330 4974889 + 102010034 AGCD01009302;AGCD01009303;GBBH01141525;GBDF01160475;XM_013510300 XP_013365754 MODEL 8741834 protein-coding LOC102022719 zinc finger protein 14-like NW_004955499 360968 399537 - 102022719 AGCD01063222;AGCD01063223;AGCD01063224;AGCD01063225;AGCD01063226;AGCD01063227;AGCD01063228;GBDF01234193;XM_013505549 XP_013361003 MODEL 9015931 protein-coding LOC102027643 oocyte-specific histone RNA stem-loop-binding protein 2-like NW_004955418 2115451 2125827 - 102027643 AGCD01018741;GBDF01040030;XM_005382104;XM_005382106;XM_005382110;XM_013513030;XM_013513032;XM_013513033 XP_005382161;XP_005382163;XP_005382167;XP_013368484;XP_013368486;XP_013368487 MODEL 8850638 ncrna LOC102007811 uncharacterized LOC102007811 NW_004955436 506358 507779 - 102007811 AGCD01033545;GBCB01129963;XR_261734 MODEL 10344701 ncrna LOC106149662 uncharacterized LOC106149662 NW_004955451 16654698 16656969 - 106149662 AGCD01043697;XR_001235976 MODEL 8855855 pseudo LOC102003440 ankyrin repeat domain-containing protein 27 pseudogene NW_004955474 5254195 5258861 - 102003440 AGCD01054402 MODEL 39132848 snrna U6 U6 spliceosomal RNA 39132699 snrna U6 U6 spliceosomal RNA 9006297 protein-coding Nfatc3 nuclear factor of activated T cells 3 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN blood vessel remodeling (ortholog); branching involved in blood vessel morphogenesis (ortholog); calcineurin-NFAT signaling cascade (ortholog); PARTICIPATES IN calcineurin signaling pathway; endothelin signaling pathway; nuclear factor of activated T-cells signaling pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); keratoconus (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955484 8433765 8558005 - 102011871 AGCD01058383;AGCD01058384;AGCD01058385;AGCD01058386;AGCD01058387;AGCD01058388;AGCD01058389;AGCD01058390;AGCD01058391;AGCD01058392;AGCD01058393;GBDI01261190;XM_005403589;XM_005403590 XP_005403646;XP_005403647 MODEL 8748109 protein-coding LOC102003218 dimethylaniline monooxygenase [N-oxide-forming] 5-like NW_004955462 10184547 10214181 - 102003218 AGCD01049355;AGCD01049356;AGCD01049357;XM_005398324 XP_005398381 MODEL 8904983 protein-coding LOC102007821 N-formyl peptide receptor 2 NW_004955558 780076 787914 - 102007821 AGCD01073389;AGCD01073390;GBDI01325712;XM_005412670;XM_013508870;XM_013508871 XP_005412727;XP_013364324;XP_013364325 MODEL 8993256 protein-coding Kpna7 karyopherin subunit alpha 7 INVOLVED IN blastocyst development (ortholog); epigenetic regulation of gene expression (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH intellectual disability (ortholog); Oocyte/Zygote/Embryo Maturation Arrest 17 (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN female germ cell nucleus (ortholog); NLS-dependent protein nuclear import complex (ortholog); nucleus (ortholog) NW_004955460 14901350 14931209 - 102006431 AGCD01048764;AGCD01048765;GBDI01140623;XM_005397932 XP_005397989 MODEL 8953426 protein-coding Ift140 intraflagellar transport 140 INVOLVED IN cilium assembly (ortholog); determination of left/right symmetry (ortholog); embryonic brain development (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); autosomal dominant polycystic kidney disease (ortholog); FOUND IN axoneme (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955442 15625429 15719006 + 102004648 AGCD01037877;AGCD01037878;GBDJ01108332;XM_005391568;XM_013517666;XM_013517667;XM_013517668 XP_005391625;XP_013373120;XP_013373121;XP_013373122 MODEL 8746502 protein-coding Dido1 death inducer-obliterator 1 INVOLVED IN apoptotic signaling pathway (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN nucleus (ortholog) NW_004955528 1153181 1207346 + 102021701 AGCD01069552;AGCD01069553;GBDF01176165;XM_005410006;XM_005410007;XM_005410008;XM_005410010;XM_005410011;XM_013507449;XM_013507450 XP_005410063;XP_005410064;XP_005410065;XP_005410067;XP_005410068;XP_013362903;XP_013362904 MODEL 8964224 ncrna LOC102017253 uncharacterized LOC102017253 NW_004955500 6569965 6573259 - 102017253 AGCD01063886;GBDI01149250;XR_264234 MODEL 8899166 protein-coding Slc1a3 solute carrier family 1 member 3 ENCODES a protein that exhibits acidic amino acid transmembrane transporter activity (ortholog); amino acid binding (ortholog); glutamate binding (ortholog); INVOLVED IN auditory behavior (ortholog); cell morphogenesis involved in neuron differentiation (ortholog); cellular response to cocaine (ortholog); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); Cornelia de Lange syndrome 1 (ortholog); COVID-19 (ortholog); FOUND IN basal plasma membrane (ortholog); basolateral plasma membrane (ortholog); cell periphery (ortholog) NW_004955426 21371985 21450749 + 102012877 AGCD01026587;GBDI01024508;XM_005386210;XM_013514995 XP_005386267;XP_013370449 MODEL 8708722 protein-coding LOC102022153 uncharacterized LOC102022153 NW_004955403 379285 396291 - 102022153 AGCD01001691;GBDI01039089;XM_013511757 XP_013367211 MODEL 10266430 protein-coding Znf567 zinc finger protein 567 NW_004955468 2283693 2360053 + 106150210 AGCD01051806;AGCD01051807;AGCD01051808;AGCD01051809;AGCD01051810;GBCE01016691;XM_013522319 XP_013377773 MODEL 8847161 protein-coding Vsig4 V-set and immunoglobulin domain containing 4 ENCODES a protein that exhibits complement component C3b binding (ortholog); INVOLVED IN negative regulation of complement activation, alternative pathway (ortholog); negative regulation of interleukin-2 production (ortholog); negative regulation of T cell proliferation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955475 5461512 5481552 - 102009939 AGCD01054919;GBCE01030376;XM_013502886;XM_013502887;XM_013502888 XP_013358340;XP_013358341;XP_013358342 MODEL 39133598 snrna U2 U2 spliceosomal RNA 8988138 ncrna LOC102004602 uncharacterized LOC102004602 NW_004955418 11360846 11376911 + 102004602 AGCD01019002;GBDF01041709;XR_260555 MODEL 8704237 protein-coding Gprin3 GPRIN family member 3 INVOLVED IN cell morphogenesis involved in neuron differentiation (ortholog); excitatory chemical synaptic transmission (ortholog); locomotory behavior (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog) NW_004955405 253917 265309 - 102005103 AGCD01004555;GBDF01115743;XM_013517274 XP_013372728 MODEL 8820137 protein-coding Spock1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 ENCODES a protein that exhibits calcium ion binding (ortholog); cysteine-type endopeptidase inhibitor activity (ortholog); metalloendopeptidase inhibitor activity (ortholog); INVOLVED IN central nervous system neuron differentiation (ortholog); negative regulation of cell-substrate adhesion (ortholog); negative regulation of neuron projection development (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog); neuromuscular junction (ortholog) NW_004955408 31954622 32465463 - 102003518 AGCD01008837;AGCD01008838;AGCD01008839;AGCD01008840;AGCD01008841;AGCD01008842;GBCB01121360;GBCE01057421;XM_005376592 XP_005376649 MODEL 39133600 snrna U2 U2 spliceosomal RNA 8926564 protein-coding Slc1a4 solute carrier family 1 member 4 ENCODES a protein that exhibits chloride channel activity (ortholog); L-alanine transmembrane transporter activity (ortholog); L-aspartate transmembrane transporter activity (ortholog); INVOLVED IN cognition (ortholog); hydroxyproline transport (ortholog); L-alanine import across plasma membrane (ortholog); PARTICIPATES IN argininosuccinic aciduria pathway; carbamoyl phosphate synthetase I deficiency pathway; citrullinemia pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); microcephaly (ortholog); FOUND IN centrosome (ortholog); dendrite (ortholog); intermediate filament (ortholog) NW_004955424 19474082 19499592 - 102005394 AGCD01024827;GBBH01089723;XM_005385695 XP_005385752 MODEL 39131453 protein-coding ZNF567 zinc finger protein 567 9048828 pseudo LOC102021796 ras-related protein Ral-A pseudogene NW_004955436 344054 347031 - 102021796 AGCD01033541 MODEL 8764256 pseudo LOC102008936 glycoprotein endo-alpha-1,2-mannosidase pseudogene NW_004955414 9246135 9247353 + 102008936 AGCD01015014 MODEL 39133552 snrna U2 U2 spliceosomal RNA 8769513 pseudo LOC102004991 UDP-glucuronosyltransferase 2B4-like NW_004955447 3992156 4014487 + 102004991 AGCD01040695;AGCD01040696;AGCD01040697;XM_005392810 MODEL 8748778 pseudo LOC102007822 60S ribosomal protein L27a pseudogene NW_004955442 13747235 13747833 + 102007822 AGCD01037787 MODEL 39132564 snrna U6 U6 spliceosomal RNA 153211021 protein-coding LCE7A late cornified envelope 7A 8701934 pseudo LOC102025191 60S ribosomal protein L23a pseudogene NW_004955578 358817 360090 + 102025191 AGCD01075477 MODEL 39133553 snrna U2 U2 spliceosomal RNA 8946911 protein-coding LOC102007826 zinc finger protein 14-like NW_004955569 1580699 1628988 + 102007826 AGCD01074671;AGCD01074672;AGCD01074673;GBDI01333117;XM_005413504 XP_005413561 MODEL 8915836 protein-coding Dimt1 DIM1 rRNA methyltransferase and ribosome maturation factor ENCODES a protein that exhibits 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity (ortholog); rRNA (adenine-N6,N6-)-dimethyltransferase activity (ortholog); INVOLVED IN positive regulation of rRNA processing (ortholog); ribosomal small subunit biogenesis (ortholog); rRNA methylation (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955446 6235004 6244422 + 102025522 AGCD01040090;GBDF01225076;XM_005392642;XM_013518423 XP_005392699;XP_013373877 MODEL 9059103 protein-coding Ift172 intraflagellar transport 172 ENCODES a protein that exhibits transcription factor binding (ortholog); INVOLVED IN bone development (ortholog); brain development (ortholog); cilium assembly (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); atrioventricular septal defect (ortholog); FOUND IN cilium (ortholog); intraciliary transport particle B (ortholog); sperm cytoplasmic droplet (ortholog) NW_004955469 9418599 9455026 - 102004921 AGCD01052503;GBDJ01229225;XM_005400503;XM_013522663 XP_005400560;XP_013378117 MODEL 8897662 protein-coding Ppp6r3 protein phosphatase 6 regulatory subunit 3 ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); immunodeficiency 90 (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955422 17247133 17387870 - 102030325 AGCD01022917;AGCD01022918;AGCD01022919;AGCD01022920;AGCD01022921;GBCE01096047;XM_005384268;XM_005384269;XM_005384270;XM_005384271;XM_005384272;XM_005384273;XM_005384275;XM_005384276;XM_005384277;XM_013514098;XM_013514100;XM_013514101 XP_005384325;XP_005384326;XP_005384327;XP_005384328;XP_005384329;XP_005384330;XP_005384332;XP_005384333;XP_005384334;XP_013369552;XP_013369554;XP_013369555 MODEL 8987617 protein-coding Seh1l SEH1 like nucleoporin INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); cellular response to amino acid starvation (ortholog); cellular response to nutrient levels (ortholog); PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); intellectual disability (ortholog); tooth agenesis (ortholog); FOUND IN GATOR2 complex (ortholog); kinetochore (ortholog); lysosomal membrane (ortholog) NW_004955402 679109 698624 - 102010537 AGCD01000028;AGCD01000029;GBBH01139869;GBCB01023252;XM_013512934 XP_013368388 MODEL 39132565 snrna U6 U6 spliceosomal RNA 8936609 ncrna LOC102023815 uncharacterized LOC102023815 NW_004955423 8397379 8400657 + 102023815 AGCD01023629;GBDF01226423;XR_260960 MODEL 8741352 pseudo LOC102003443 mitochondrial fission factor pseudogene NW_004955416 13475518 13476401 - 102003443 AGCD01017224;XM_005381465 MODEL 8910885 protein-coding Shox2 SHOX homeobox 2 ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); INVOLVED IN cardiac atrium morphogenesis (ortholog); cardiac pacemaker cell differentiation (ortholog); cardiac right atrium morphogenesis (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); cleft palate (ortholog); Leri-Weill dyschondrosteosis (ortholog) NW_004955448 8937656 8947890 - 102024863 AGCD01041456;GBBH01225102;XM_005393094;XM_005393095 XP_005393151;XP_005393152 MODEL 39132567 snrna U6 U6 spliceosomal RNA 8730504 protein-coding LOC102026172 vomeronasal type-1 receptor 1-like NW_004955584 608520 613650 - 102026172 AGCD01075950;XM_005414413 XP_005414470 MODEL 8712208 protein-coding Nsd2 nuclear receptor binding SET domain protein 2 ENCODES a protein that exhibits chromatin binding (ortholog); histone H3K36 methyltransferase activity (ortholog); histone H3K36 trimethyltransferase activity (ortholog); INVOLVED IN atrial septum primum morphogenesis (ortholog); atrial septum secundum morphogenesis (ortholog); bone development (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); anemia (ortholog); Breast Neoplasms (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955514 1084522 1162624 + 102020695 AGCD01067037;GBDF01040595;XM_005408719;XM_005408720 XP_005408776;XP_005408777 MODEL 8846916 protein-coding Spock2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 ENCODES a protein that exhibits calcium ion binding (ortholog); extracellular matrix binding (ortholog); glycosaminoglycan binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); extracellular matrix organization (ortholog); positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH combined saposin deficiency (ortholog) NW_004955437 19494102 19519218 + 102003282 AGCD01034856;GBDK01021743;XM_005390019 XP_005390076 MODEL 8796263 protein-coding Sc5d sterol-C5-desaturase ENCODES a protein that exhibits C-5 sterol desaturase activity (ortholog); delta7-sterol 5(6)-desaturase activity (ortholog); INVOLVED IN cholesterol biosynthetic process (ortholog); cholesterol biosynthetic process via lathosterol (ortholog); negative regulation of ferroptosis (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955412 22274131 22288870 + 102014758 AGCD01013044;GBDK01146982;XM_005378360;XM_005378361;XM_005378362;XM_005378363 XP_005378417;XP_005378418;XP_005378419;XP_005378420 MODEL 8725080 protein-coding Nfatc4 nuclear factor of activated T cells 4 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN brain-derived neurotrophic factor receptor signaling pathway (ortholog); branching involved in blood vessel morphogenesis (ortholog); calcineurin-NFAT signaling cascade (ortholog); PARTICIPATES IN calcineurin signaling pathway; nuclear factor of activated T-cells signaling pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Chemical and Drug Induced Liver Injury (ortholog); dilated cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955409 35931208 35941555 - 102027821 AGCD01010436;AGCD01010437;GBDK01061586;XM_005377004;XM_005377005 XP_005377061;XP_005377062 MODEL 8805844 protein-coding Ust uronyl 2-sulfotransferase ENCODES a protein that exhibits 3'-phosphoadenosine 5'-phosphosulfate binding (ortholog); chondroitin 2-sulfotransferase activity (ortholog); dermatan 2-sulfotransferase activity (ortholog); INVOLVED IN dermatan sulfate proteoglycan biosynthetic process (ortholog); establishment of cell polarity (ortholog); regulation of axonogenesis (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); attention deficit hyperactivity disorder (ortholog); basal cell carcinoma (ortholog) NW_004955439 12122935 12406368 - 102015893 AGCD01035934;AGCD01035935;AGCD01035936;AGCD01035937;GBDK01360469;XM_005390617 XP_005390674 MODEL 10240832 pseudo LOC106147248 40S ribosomal protein S2 pseudogene NW_004955533 3739821 3740916 - 106147248 AGCD01070429 MODEL 39132568 snrna U6 U6 spliceosomal RNA 8832675 protein-coding LOC102026179 keratin-associated protein 9-2-like NW_004955451 15654523 15662965 + 102026179 AGCD01043630;AGCD01043631;GBBH01047683;XM_013519181;XM_013519182 XP_013374635;XP_013374636 MODEL 10256219 pseudo LOC106147249 nucleoside diphosphate kinase 3 pseudogene NW_004955533 717210 720154 + 106147249 AGCD01070326 MODEL 39132571 snrna U6 U6 spliceosomal RNA 39133555 snrna U2 U2 spliceosomal RNA 8879516 protein-coding Nol7 nucleolar protein 7 INVOLVED IN maturation of SSU-rRNA (ortholog); ribosomal small subunit biogenesis (ortholog); FOUND IN chromosome (ortholog); mitochondrion (ortholog); nucleolus (ortholog) NW_004955465 1123455 1127529 - 102010462 AGCD01050331;GBDK01090195;XM_005398796 XP_005398853 MODEL 8949894 protein-coding LOC102006328 zinc finger protein 792-like NW_004955468 4283745 4310889 + 102006328 AGCD01051904;AGCD01051905;GBDK01043079;XM_005400008;XM_005400009;XM_005400010;XM_005400011;XM_013522364;XM_013522365 XP_005400065;XP_005400066;XP_005400067;XP_005400068;XP_013377818;XP_013377819 MODEL 8940072 protein-coding Yipf7 Yip1 domain family member 7 INVOLVED IN Golgi organization (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955443 3405515 3427774 + 102006292 AGCD01038192;GBCB01001162;XM_013518067;XM_013518068 XP_013373521;XP_013373522 MODEL 8717042 protein-coding LOC102027184 olfactory receptor 3A1 NW_004955481 180252 181211 + 102027184 AGCD01056783;XM_013503360 XP_013358814 MODEL 8922411 pseudo LOC102003219 calcyclin-binding protein pseudogene NW_004955411 30807769 30808487 + 102003219 AGCD01012264 MODEL 8762735 protein-coding Lrrc18 leucine rich repeat containing 18 ASSOCIATED WITH Cockayne syndrome B (ortholog); megacolon (ortholog); schizophrenia (ortholog) NW_004955556 1213871 1237281 + 102005975 AGCD01073187;AGCD01073188;AGCD01073189;AGCD01073190;GBDF01010139;XM_005412580;XM_005412581;XM_005412582;XM_005412583;XM_005412584;XM_005412586 XP_005412637;XP_005412638;XP_005412639;XP_005412640;XP_005412641;XP_005412643 MODEL 9066078 protein-coding Bod1 biorientation of chromosomes in cell division 1 ENCODES a protein that exhibits protein phosphatase 2A binding (ortholog); protein phosphatase inhibitor activity (ortholog); INVOLVED IN mitotic metaphase chromosome alignment (ortholog); mitotic sister chromatid biorientation (ortholog); mitotic sister chromatid cohesion, centromeric (ortholog); FOUND IN centrosome (ortholog); outer kinetochore (ortholog); Set1C/COMPASS complex (ortholog) NW_004955408 26235229 26242576 - 102025658 AGCD01008665;GBDF01008932;XM_005376586 XP_005376643 MODEL 8941197 ncrna LOC102027188 uncharacterized LOC102027188 NW_004955419 7287434 7303006 - 102027188 AGCD01019877;GBDJ01398831;XR_001233606;XR_001233607;XR_001233608;XR_260617;XR_260619 MODEL 9024608 protein-coding Nol8 nucleolar protein 8 INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); protein localization to nucleolus (ortholog); rRNA processing (ortholog); ASSOCIATED WITH hereditary sensory and autonomic neuropathy type 1 (ortholog); hereditary sensory neuropathy (ortholog); Prostatic Neoplasms (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog) NW_004955515 5448530 5473278 + 102029653 AGCD01067353;GBDF01251604;XM_005408915;XM_005408916;XM_013506866;XM_013506867 XP_005408972;XP_005408973;XP_013362320;XP_013362321 MODEL 8754321 protein-coding Shpk sedoheptulokinase ENCODES a protein that exhibits sedoheptulokinase activity (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); cellular response to interleukin-13 (ortholog); cellular response to interleukin-4 (ortholog); ASSOCIATED WITH Abderhalden-Kaufmann-Lignac Syndrome (ortholog); Canavan disease (ortholog); cystinosis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955467 13169072 13209585 + 102020549 AGCD01051667;AGCD01051668;GBCQ01123966;XM_005399716;XM_005399717 XP_005399773;XP_005399774 MODEL 9009240 protein-coding Tgds TDP-glucose 4,6-dehydratase ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Catel Manzke syndrome (ortholog); Congenital Microcoria (ortholog) NW_004955404 15279956 15298295 + 102027604 AGCD01003541;GBCE01123205;XM_005374111;XM_005374112;XM_005374113;XM_013516287 XP_005374168;XP_005374169;XP_005374170;XP_013371741 MODEL 10150975 protein-coding LOC106149664 myosin IC heavy chain-like NW_004955451 17368428 17368680 - 106149664 AGCD01043745;GBCQ01144666;XM_013519263 XP_013374717 MODEL 8940493 ncrna LOC102022154 uncharacterized LOC102022154 NW_004955404 2424413 2428084 + 102022154 AGCD01003258;GBDJ01337735;XR_001234589;XR_259290 MODEL 8742870 protein-coding Spock3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 ENCODES a protein that exhibits glycosaminoglycan binding (ortholog); metalloendopeptidase inhibitor activity (ortholog); INVOLVED IN negative regulation of endopeptidase activity (ortholog); FOUND IN extracellular matrix (ortholog); extracellular space (ortholog) NW_004955403 38476251 38870760 + 102009674 AGCD01002591;AGCD01002592;AGCD01002593;AGCD01002594;AGCD01002595;AGCD01002596;AGCD01002597;AGCD01002598;AGCD01002599;AGCD01002600;AGCD01002601;AGCD01002602;AGCD01002603;AGCD01002604;AGCD01002605;AGCD01002606;AGCD01002607;AGCD01002608;AGCD01002609;GBCE01084916;XM_005373579;XM_005373580;XM_005373581 XP_005373636;XP_005373637;XP_005373638 MODEL 8810979 protein-coding LOC102028874 cytochrome P450 2U1 ENCODES a protein that exhibits arachidonate omega-hydroxylase activity (ortholog); INVOLVED IN omega-hydroxylase P450 pathway (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH 3-Hydroxyacyl-CoA Dehydrogenase Deficiency (ortholog); autism spectrum disorder (ortholog); Developmental Disabilities (ortholog) NW_004955496 1873031 1887840 - 102028874 AGCD01062260;GBCE01114123;GBDJ01264560;XM_005406282 XP_005406339 MODEL 8846078 pseudo LOC102027196 40S ribosomal protein S21 pseudogene NW_004955492 8910613 8910919 - 102027196 AGCD01060832 MODEL 39132700 snrna U6 U6 spliceosomal RNA 8788368 protein-coding Dio1 iodothyronine deiodinase 1 ENCODES a protein that exhibits selenium binding (ortholog); thyroxine 5'-deiodinase activity (ortholog); thyroxine 5-deiodinase activity (ortholog); INVOLVED IN amino acid metabolic process (ortholog); thyroid hormone catabolic process (ortholog); thyroid hormone metabolic process (ortholog); ASSOCIATED WITH Abnormal Thyroid Hormone Metabolism 2 (ortholog); Experimental Liver Cirrhosis (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955464 5340219 5355182 - 102007314 AGCD01050004;GBDI01002388;XM_013521716 XP_013377170 MODEL 8796185 protein-coding Mllt10 MLLT10 histone lysine methyltransferase DOT1L cofactor ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); nucleosome binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acute monocytic leukemia (ortholog); acute myeloid leukemia (ortholog); melanoma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955429 6999333 7163988 - 102013319 AGCD01028575;AGCD01028576;AGCD01028577;AGCD01028578;AGCD01028579;AGCD01028580;AGCD01028581;GBCB01058018;GBDI01176543;XM_013515398;XM_013515399;XM_013515400;XM_013515401;XM_013515402 XP_013370852;XP_013370853;XP_013370854;XP_013370855;XP_013370856 MODEL 8892908 protein-coding Tgfa transforming growth factor alpha ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); growth factor activity (ortholog); receptor ligand activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell surface receptor signaling pathway (ortholog); epidermal growth factor receptor signaling pathway (ortholog); PARTICIPATES IN altered epidermal growth factor/neuregulin signaling pathway; epidermal growth factor/neuregulin signaling pathway; pancreatic cancer pathway; ASSOCIATED WITH acute kidney failure (ortholog); Animal Mammary Neoplasms (ortholog); Experimental Liver Neoplasms (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); cytoplasmic vesicle (ortholog) NW_004955424 14616390 14709723 + 102005158 AGCD01024659;GBBH01221968;XM_005385613;XM_005385614 XP_005385670;XP_005385671 MODEL 39133557 snrna U2 U2 spliceosomal RNA 8963814 protein-coding LOC102028877 desert hedgehog protein NW_004955500 7916583 7920075 - 102028877 AGCD01063959;AGCD01063960;GBCQ01087657;GBDK01383445;XM_013505717 XP_013361171 MODEL 8730380 protein-coding Spon1 spondin 1 ENCODES a protein that exhibits LBD domain binding (ortholog); INVOLVED IN negative regulation of amyloid-beta formation (ortholog); positive regulation of amyloid precursor protein catabolic process (ortholog); positive regulation of protein processing (ortholog); ASSOCIATED WITH COVID-19 (ortholog); intellectual disability (ortholog) NW_004955414 29180246 29475547 + 102022490 AGCD01015700;AGCD01015701;AGCD01015702;AGCD01015703;AGCD01015704;AGCD01015705;GBCE01077278;XM_005380330 XP_005380387 MODEL 9014614 protein-coding LOC102006333 olfactory receptor 52D1 NW_004955414 21395818 21396783 + 102006333 AGCD01015418;XM_005380089 XP_005380146 MODEL 39132701 snrna U6 U6 spliceosomal RNA 10364987 protein-coding Scaf1 SR-related CTD associated factor 1 ENCODES a protein that exhibits protein domain specific binding (ortholog); RNA polymerase II C-terminal domain binding (ortholog); INVOLVED IN mRNA processing (ortholog); transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 12 (ortholog); end stage renal disease (ortholog) NW_004955559 1229479 1234563 - 106147437 AGCD01073637;GBCQ01037858;GBDK01019238;XM_013508979 XP_013364433 MODEL 8830537 pseudo LOC102004994 U2 small nuclear ribonucleoprotein A' pseudogene NW_004955402 7571597 7573482 - 102004994 AGCD01000179;XR_259128 MODEL 39133560 snrna U2 U2 spliceosomal RNA 8952633 pseudo LOC102006337 peptidyl-prolyl cis-trans isomerase G pseudogene NW_004955414 2350960 2358590 - 102006337 AGCD01014790;AGCD01014791;AGCD01014792 MODEL 8767373 protein-coding Nsd3 nuclear receptor binding SET domain protein 3 ENCODES a protein that exhibits histone H3K27 dimethyltransferase activity (ortholog); histone H3K27 methyltransferase activity (ortholog); histone H3K27 trimethyltransferase activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH hereditary spastic paraplegia 54 (ortholog); hypogonadotropic hypogonadism 2 with or without anosmia (ortholog); myeloid leukemia (ortholog); FOUND IN nucleus (ortholog) NW_004955463 13864294 13985995 - 102022371 AGCD01049892;AGCD01049893;AGCD01049894;AGCD01049895;AGCD01049896;GBCE01186815;GBDI01131067;XM_005398440 XP_005398497 MODEL 8832511 protein-coding Lck LCK proto-oncogene, Src family tyrosine kinase ENCODES a protein that exhibits antigen binding (ortholog); ATPase binding (ortholog); CD4 receptor binding (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); CD27 signaling pathway (ortholog); cell surface receptor signaling pathway (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; glypican signaling pathway; ASSOCIATED WITH allergic conjunctivitis (ortholog); dilated cardiomyopathy (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); endocytic vesicle (ortholog) NW_004955452 10608317 10632310 + 102019766 AGCD01044281;AGCD01044282;AGCD01044283;GBDJ01388405;XM_005395058;XM_005395059 XP_005395115;XP_005395116 MODEL 8756065 protein-coding Vsir V-set immunoregulatory receptor ENCODES a protein that exhibits endopeptidase activator activity (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN BMP signaling pathway (ortholog); negative regulation of CD4-positive, alpha-beta T cell proliferation (ortholog); negative regulation of CD8-positive, alpha-beta T cell proliferation (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 12 (ortholog); combined saposin deficiency (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955437 19716466 19743428 + 102005300 AGCD01034865;GBDI01132421;XM_005390027;XM_013516838 XP_005390084;XP_013372292 MODEL 8930079 protein-coding Spon2 spondin 2 ENCODES a protein that exhibits antigen binding (ortholog); lipopolysaccharide binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN cell adhesion (ortholog); cellular response to lipopolysaccharide (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Carotid Artery Injuries (ortholog); cherubism (ortholog); FOUND IN extracellular matrix (ortholog); extracellular space (ortholog) NW_004955514 598840 603390 - 102012117 AGCD01067016;GBCB01123188;XM_005408688 XP_005408745 MODEL 8976725 ncrna LOC102004995 uncharacterized LOC102004995 NW_004955403 8923034 8930408 - 102004995 AGCD01001897;AGCD01001898;GBDF01159890;XR_259164 MODEL 8856542 ncrna LOC102026188 uncharacterized LOC102026188 NW_004955408 6634902 6691460 - 102026188 AGCD01008180;GBDF01127988;XR_001232044;XR_001232045 MODEL 8858507 protein-coding Ift20 intraflagellar transport 20 ENCODES a protein that exhibits opsin binding (ortholog); small GTPase binding (ortholog); INVOLVED IN cardiac muscle cell differentiation (ortholog); centrosome localization (ortholog); cilium assembly (ortholog); FOUND IN acrosomal vesicle (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955481 4799548 4807751 + 102007225 AGCD01056953;GBDF01089063;XM_005402762;XM_005402763;XM_005402764;XM_005402766;XM_005402767 XP_005402819;XP_005402820;XP_005402821;XP_005402823;XP_005402824 MODEL 8951103 pseudo LOC102023816 mortality factor 4-like protein 1 NW_004955423 5415622 5416748 + 102023816 AGCD01023560 MODEL 8832931 protein-coding Scaf11 SR-related CTD associated factor 11 INVOLVED IN RNA splicing (ortholog); RNA splicing, via transesterification reactions (ortholog); spliceosomal complex assembly (ortholog); FOUND IN nuclear body (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955500 5187112 5229929 - 102010602 AGCD01063825;GBBH01092529;XM_005406594;XM_005406595;XM_013505704 XP_005406651;XP_005406652;XP_013361158 MODEL 8841928 protein-coding Slc1a5 solute carrier family 1 member 5 ENCODES a protein that exhibits antiporter activity (ortholog); L-aspartate transmembrane transporter activity (ortholog); L-glutamine transmembrane transporter activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); glutamine secretion (ortholog); glutamine transport (ortholog); PARTICIPATES IN argininosuccinic aciduria pathway; carbamoyl phosphate synthetase I deficiency pathway; citrullinemia pathway; ASSOCIATED WITH COVID-19 (ortholog); esophagus squamous cell carcinoma (ortholog); hereditary spastic paraplegia (ortholog); FOUND IN basal plasma membrane (ortholog); centriolar satellite (ortholog); ciliary basal body (ortholog) NW_004955574 798004 806631 - 102030015 AGCD01075130;GBDF01209889;XM_013509576 XP_013365030 MODEL 8861756 ncrna LOC102020537 uncharacterized LOC102020537 NW_004955410 17663904 17685639 + 102020537 AGCD01010991;GBCQ01087275;XR_259847 MODEL 8919417 protein-coding Tnnc2 troponin C2, fast skeletal type ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN regulation of muscle contraction (ortholog); skeletal muscle contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH adenosine deaminase deficiency (ortholog); congenital myopathy 15 (ortholog); focal epilepsy (ortholog); FOUND IN troponin complex (ortholog) NW_004955445 11466579 11469123 + 102028244 AGCD01039695;GBDJ01423779;XM_005392409 XP_005392466 MODEL 8755692 protein-coding Kpnb1 karyopherin subunit beta 1 ENCODES a protein that exhibits enzyme binding (ortholog); Hsp90 protein binding (ortholog); importin-alpha family protein binding (ortholog); INVOLVED IN astral microtubule organization (ortholog); establishment of mitotic spindle localization (ortholog); mitotic chromosome movement towards spindle pole (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); human immunodeficiency virus infectious disease (ortholog); ovarian carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955451 13365881 13398491 - 102016121 AGCD01043472;AGCD01043473;AGCD01043474;GBCB01004358;XM_005394271 XP_005394328 MODEL 8963168 protein-coding Znf568 zinc finger protein 568 NW_004955468 2031119 2088171 + 102004918 AGCD01051793;AGCD01051794;GBDF01279312;XM_005399905;XM_005399906;XM_013522316 XP_005399962;XP_005399963;XP_013377770 MODEL 8861185 protein-coding LOC102023109 cytochrome c1, heme protein, mitochondrial INVOLVED IN response to glucagon (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); holoprosencephaly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex III (ortholog) NW_004955454 2758935 2760569 + 102023109 AGCD01045033;GBCQ01008022;GBDF01045160;XM_013520268 XP_013375722 MODEL 8974162 pseudo LOC102017256 DCC-interacting protein 13-alpha pseudogene NW_004955425 5308856 5312153 - 102017256 AGCD01025339;AGCD01025340 MODEL 8774805 protein-coding Spop speckle type BTB/POZ protein ENCODES a protein that exhibits identical protein binding (ortholog); molecular function inhibitor activity (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN glucose homeostasis (ortholog); intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); negative regulation of DNA-binding transcription factor activity (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH colorectal cancer (ortholog); Ductal Carcinoma (ortholog); Endometrial Neoplasms (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955451 11897642 11970269 + 102023968 AGCD01043369;AGCD01043370;GBDI01079176;XM_005394208 XP_005394265 MODEL 8893979 protein-coding LOC102020539 cytohesin-3-like NW_004955463 5346764 5348878 - 102020539 AGCD01049638;XM_013521492 XP_013376946 MODEL 8743135 protein-coding Ift22 intraflagellar transport 22 ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN centrosome (ortholog); cilium (ortholog); intraciliary transport particle B (ortholog) NW_004955456 15980412 15987573 + 102020763 AGCD01046681;GBDF01088462;XM_005396853;XM_005396854;XR_262912 XP_005396910;XP_005396911 MODEL 39131419 protein-coding NFE2 nuclear factor, erythroid 2 8757240 protein-coding Utf1 undifferentiated embryonic cell transcription factor 1 ENCODES a protein that exhibits HMG box domain binding (ortholog); TBP-class protein binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN male gonad development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); FOUND IN nucleus (ortholog) NW_004955477 10855471 10857044 + 102029179 AGCD01055708;GBDF01121200;XM_005402053;XM_005402054 XP_005402110;XP_005402111 MODEL 8754511 protein-coding Nol9 nucleolar protein 9 ENCODES a protein that exhibits ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity (ortholog); INVOLVED IN maturation of 5.8S rRNA (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN intermediate filament cytoskeleton (ortholog); nucleolus (ortholog) NW_004955486 6066093 6079756 + 102025251 AGCD01059106;AGCD01059107;GBBH01209733;GBDI01256868;XM_013504255 XP_013359709 MODEL 8762401 ncrna LOC102023113 uncharacterized LOC102023113 NW_004955407 27659467 27670297 + 102023113 AGCD01007555;GBCQ01144581;XR_259591 MODEL 10323362 pseudo LOC106149665 histone H3.3-like NW_004955405 36637687 36638249 - 106149665 AGCD01005422 MODEL 10326771 ncrna LOC106149231 uncharacterized LOC106149231 NW_004955440 19846244 19855130 - 106149231 AGCD01036646;GBDK01126024;XR_001235276 MODEL 9048590 protein-coding LOC102012872 olfactory receptor 1I1 NW_004955495 8171204 8172145 - 102012872 AGCD01062187;XM_005406096 XP_005406153 MODEL 8743316 ncrna LOC102027197 uncharacterized LOC102027197 NW_004955422 18355100 18371061 + 102027197 AGCD01022946;GBCE01047391;XR_001234002;XR_001234003;XR_001234004;XR_001234005;XR_001234006;XR_260893 MODEL 9051425 protein-coding Espl1 extra spindle pole bodies like 1, separase ENCODES a protein that exhibits cysteine-type peptidase activity (ortholog); peptidase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); homologous chromosome segregation (ortholog); meiosis I (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); breast cancer (ortholog); COVID-19 (ortholog); FOUND IN centrosome (ortholog) NW_004955458 530269 553919 + 102017308 AGCD01047132;AGCD01047133;GBDF01082490;XM_005397164;XM_005397165;XM_005397166;XM_005397167 XP_005397221;XP_005397222;XP_005397223;XP_005397224 MODEL 8759089 protein-coding Uba3 ubiquitin like modifier activating enzyme 3 ENCODES a protein that exhibits identical protein binding (ortholog); NEDD8 activating enzyme activity (ortholog); nuclear receptor binding (ortholog); INVOLVED IN endomitotic cell cycle (ortholog); mitotic cell cycle (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN neddylation pathway; proteasome degradation pathway involving cullin-dependent ubiquitin ligases; FOUND IN nucleus (ortholog); protein-containing complex (ortholog) NW_004955421 18781015 18801266 + 102012764 AGCD01022056;GBCB01042753;GBCQ01070793;XM_013513797 XP_013369251 MODEL 10153369 protein-coding LOC106149521 translation initiation factor IF-2-like NW_004955448 18814385 18815128 + 106149521 AGCD01041753;GBBH01183804;XM_013518594 XP_013374048 MODEL 8804190 pseudo LOC102012875 uncharacterized LOC102012875 NW_004955497 3366221 3391937 + 102012875 AGCD01062536;AGCD01062537;AGCD01062538;AGCD01062539 MODEL 8964180 protein-coding Kprp keratinocyte proline rich protein INVOLVED IN desmosome organization (ortholog); epidermis development (ortholog); establishment of skin barrier (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog) NW_004955592 642559 647030 - 102014099 AGCD01076320;GBCC01008189;XM_005414622 XP_005414679 MODEL 8773525 protein-coding Tgfb1 transforming growth factor beta 1 ENCODES a protein that exhibits cytokine activity (ortholog); deubiquitinase activator activity (ortholog); enzyme binding (ortholog); INVOLVED IN adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains (ortholog); animal organ regeneration (ortholog); aortic valve morphogenesis (ortholog); PARTICIPATES IN altered transforming growth factor-beta Smad dependent signaling pathway; colorectal cancer pathway; glypican signaling pathway; ASSOCIATED WITH acromicric dysplasia (ortholog); actinic keratosis (ortholog); acute kidney failure (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); collagen-containing extracellular matrix (ortholog) NW_004955555 274405 288441 - 102014951 AGCD01073024;GBDF01304069;XM_005412338 XP_005412395 MODEL 39131500 protein-coding ZNF568 zinc finger protein 568 8888469 protein-coding Espn espin ENCODES a protein that exhibits actin filament binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); locomotory behavior (ortholog); microvillar actin bundle assembly (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 36 (ortholog); chromosome 1p36 deletion syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); brush border (ortholog); cytoplasm (ortholog) NW_004955486 6130190 6156859 - 102025585 AGCD01059108;AGCD01059109;GBDF01000176;GBDF01000177;XM_013504283 XP_013359737 MODEL 39132702 snrna U6 U6 spliceosomal RNA 408395152 protein-coding SLC1A5 solute carrier family 1 member 5 8866504 protein-coding Tnni1 troponin I1, slow skeletal type INVOLVED IN transition between fast and slow fiber (ortholog); ventricular cardiac muscle tissue morphogenesis (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN troponin complex (ortholog) NW_004955406 37535397 37554868 - 102015690 AGCD01006576;GBCB01024722;XM_013522223;XM_013522227 XP_013377677;XP_013377681 MODEL 39132575 snrna U6 U6 spliceosomal RNA 39132703 snrna U6 U6 spliceosomal RNA 39131468 protein-coding ZNF569 zinc finger protein 569 8933579 protein-coding Nsdhl NAD(P) dependent steroid dehydrogenase-like INVOLVED IN cholesterol metabolic process (ortholog); hair follicle development (ortholog); labyrinthine layer blood vessel development (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN endoplasmic reticulum (ortholog); lipid droplet (ortholog) NW_004955498 8135897 8161775 + 102011559 AGCD01063167;AGCD01063168;GBBH01050653;XM_005406453;XM_005406454 XP_005406510;XP_005406511 MODEL 8903132 protein-coding LOC102021800 disintegrin and metalloproteinase domain-containing protein 18-like NW_004955536 3675217 3758163 + 102021800 AGCD01070831;AGCD01070832;AGCD01070833;AGCD01070834;GBDF01001976;XM_005410550;XM_013507715;XM_013507716 XP_005410607;XP_013363169;XP_013363170 MODEL 8834285 protein-coding Yjefn3 YjeF N-terminal domain containing 3 ASSOCIATED WITH urinary bladder cancer (ortholog) NW_004955524 2421350 2426509 - 102005628 AGCD01068817;GBDJ01273409;XM_013507296 XP_013362750 MODEL 8707690 ncrna LOC102004996 uncharacterized LOC102004996 NW_004955451 5008763 5013506 + 102004996 AGCD01043159;GBDF01208277;XR_001235984;XR_262579 MODEL 10313147 ncrna LOC106149666 uncharacterized LOC106149666 NW_004955451 18040027 18042949 + 106149666 AGCD01043790;GBDK01022281;XR_001235977 MODEL 8728610 protein-coding Dio2 iodothyronine deiodinase 2 ENCODES a protein that exhibits thyroxine 5'-deiodinase activity (ortholog); thyroxine 5-deiodinase activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); lipid metabolic process (ortholog); positive regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); basal cell carcinoma (ortholog); endometriosis (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955438 3946830 3961049 - 102023633 AGCD01035034;GBCE01029600;XM_005390230;XM_013517246 XP_005390287;XP_013372700 MODEL 8899569 protein-coding LOC102024766 olfactory receptor 9-like NW_004955458 3192160 3193098 - 102024766 AGCD01047278;XM_013520802 XP_013376256 MODEL 8931408 ncrna LOC102003223 uncharacterized LOC102003223 NW_004955467 6583158 6595059 - 102003223 AGCD01051417;GBDI01181558;XR_001236858;XR_263342;XR_263343;XR_263344 MODEL 39131476 protein-coding ZNF570 zinc finger protein 570 8947792 protein-coding Mllt11 MLLT11 transcription factor 7 cofactor INVOLVED IN extrinsic apoptotic signaling pathway (ortholog); intrinsic apoptotic signaling pathway (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH Burkitt lymphoma (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955588 427102 438578 + 102023091 AGCD01076109;AGCD01076110;GBDF01003825;XM_005414488;XM_005414489;XM_013509904;XM_013509905 XP_005414545;XP_005414546;XP_013365358;XP_013365359 MODEL 8997992 protein-coding Yju2 YJU2 splicing factor homolog ASSOCIATED WITH amenorrhea (ortholog); FOUND IN U2-type catalytic step 1 spliceosome (ortholog) NW_004955495 4591242 4605403 - 102011131 AGCD01061935;AGCD01061936;GBDF01187806;XM_005405805;XM_005405806 XP_005405862;XP_005405863 MODEL 8833270 protein-coding LOC102021806 kallikrein-13 NW_004955558 1399746 1434873 + 102021806 AGCD01073442;AGCD01073443;AGCD01073444;GBCQ01148135;XM_005412713;XM_005412715;XM_013508921;XM_013508922;XM_013508923 XP_005412770;XP_005412772;XP_013364375;XP_013364376;XP_013364377 MODEL 8710019 pseudo LOC102017257 60S acidic ribosomal protein P2 pseudogene NW_004955501 1411347 1416378 - 102017257 AGCD01064052 MODEL 39133563 snrna U2 U2 spliceosomal RNA 9006315 pseudo LOC102012878 mitochondrial import inner membrane translocase subunit TIM14 pseudogene NW_004955426 25828943 25829298 - 102012878 AGCD01026728 MODEL 8984449 protein-coding Ros1 ROS proto-oncogene 1, receptor tyrosine kinase ENCODES a protein that exhibits protein phosphatase binding (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN cell differentiation (ortholog); columnar/cuboidal epithelial cell development (ortholog); gene expression (ortholog); ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); Dwarfism (ortholog); FOUND IN cell surface (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955436 528038 636194 - 102008025 AGCD01033549;AGCD01033550;GBDK01234891;XM_005389121;XM_013516700;XM_013516701 XP_005389178;XP_013372154;XP_013372155 MODEL 9021137 pseudo LOC102003444 vesicle transport through interaction with t-SNAREs homolog 1B pseudogene NW_004955478 11045244 11049588 + 102003444 AGCD01056157 MODEL 8859792 protein-coding Znf572 zinc finger protein 572 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH trichorhinophalangeal syndrome type I (ortholog); FOUND IN nucleus (ortholog) NW_004955461 39616 96197 + 102026838 AGCD01048788;AGCD01048789;AGCD01048790;GBCE01111363;XM_005397976;XM_005397977;XM_005397978;XM_005397979;XM_005397980 XP_005398033;XP_005398034;XP_005398035;XP_005398036;XP_005398037 MODEL 8728227 protein-coding LOC102008939 probable E3 ubiquitin-protein ligase HERC6 NW_004955474 12079119 12140769 - 102008939 AGCD01054648;AGCD01054649;AGCD01054650;GBDK01319254;XM_013502713 XP_013358167 MODEL 8747479 protein-coding Ift25 intraflagellar transport 25 INVOLVED IN cilium assembly (ortholog); heart development (ortholog); kidney development (ortholog); ASSOCIATED WITH renal agenesis (ortholog); FOUND IN centrosome (ortholog); cilium (ortholog); intraciliary transport particle B (ortholog) NW_004955464 5299206 5324136 + 102007636 AGCD01050004;GBDF01224459;XM_005398544;XM_005398545;XM_005398546;XM_005398547;XM_005398549;XM_005398550;XM_013521718;XM_013521719 XP_005398601;XP_005398602;XP_005398603;XP_005398604;XP_005398606;XP_005398607;XP_013377172;XP_013377173 MODEL 8748015 protein-coding Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase INVOLVED IN ERAD pathway (ortholog); protein secretion (ortholog); response to endoplasmic reticulum stress (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); pancreatic cancer (ortholog); FOUND IN Derlin-1 retrotranslocation complex (ortholog); endoplasmic reticulum (ortholog); Hrd1p ubiquitin ligase complex (ortholog) NW_004955438 5030915 5082015 - 102027339 AGCD01035057;GBCC01026837;XM_005390240 XP_005390297 MODEL 8962121 protein-coding Utp11 UTP11 small subunit processome component INVOLVED IN nervous system development (ortholog); positive regulation of apoptotic process (ortholog); ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular space (ortholog) NW_004955452 15733479 15743545 + 102017189 AGCD01044497;GBDF01122920;XM_005395227 XP_005395284 MODEL 9007383 protein-coding LOC102021810 olfactory receptor 1052-like NW_004955568 988414 994736 - 102021810 AGCD01074533;AGCD01074534;XM_005413486 XP_005413543 MODEL 8934859 protein-coding Lclat1 lysocardiolipin acyltransferase 1 ENCODES a protein that exhibits 1-acylglycerol-3-phosphate O-acyltransferase activity (ortholog); acyltransferase activity (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955469 12234689 12431951 + 102020999 AGCD01052580;AGCD01052581;GBDK01177327;XM_005400553;XM_005400554;XM_005400555;XM_005400556;XM_013522665;XM_013522666;XM_013522667;XM_013522668 XP_005400610;XP_005400611;XP_005400612;XP_005400613;XP_013378119;XP_013378120;XP_013378121;XP_013378122 MODEL 8876553 ncrna LOC102012879 uncharacterized LOC102012879 NW_004955504 2373902 2394467 + 102012879 AGCD01064857;AGCD01064858;GBCB01109961;XR_001231540;XR_264288 MODEL 8721613 ncrna LOC102003450 uncharacterized LOC102003450 NW_004955485 6812985 6814556 - 102003450 AGCD01058629;GBDF01041975;XR_263914 MODEL 8919416 protein-coding LOC102027201 spermatogenesis-associated protein 31A3-like NW_004955422 24179300 24183284 + 102027201 AGCD01023216;GBDF01188194;XM_013513837 XP_013369291 MODEL 9011618 protein-coding LOC102004603 disintegrin and metalloproteinase domain-containing protein 1a-like NW_004955482 8437339 8442885 + 102004603 AGCD01057520;GBDK01219783;XM_005403177 XP_005403234 MODEL 8818506 protein-coding LOC102028880 cytochrome P450 2C5-like NW_004955507 1348115 1370194 + 102028880 AGCD01065547;AGCD01065548;AGCD01065549;AGCD01065550;AGCD01065551;AGCD01065552;GBDI01308866;GBDK01216134;XM_013506233 XP_013361687 MODEL 10349642 ncrna LOC106149522 uncharacterized LOC106149522 NW_004955448 3400362 3413353 + 106149522 AGCD01041335;GBDF01119039;XR_001235768 MODEL 8795352 protein-coding Uba5 ubiquitin like modifier activating enzyme 5 ENCODES a protein that exhibits protein homodimerization activity (ortholog); UFM1 activating enzyme activity (ortholog); zinc ion binding (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); megakaryocyte differentiation (ortholog); neuromuscular process (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); autosomal recessive spinocerebellar ataxia 24 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955501 5841516 5864304 - 102004500 AGCD01064170;AGCD01064171;AGCD01064172;GBBH01186472;XM_005406827 XP_005406884 MODEL 8845906 protein-coding LOC102022156 cytochrome c-like NW_004955405 15750007 15750318 - 102022156 AGCD01004951;XM_005374685 XP_005374742 MODEL 9030889 protein-coding Shprh SNF2 histone linker PHD RING helicase ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin protein ligase binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN DNA damage response (ortholog); protein polyubiquitination (ortholog) NW_004955436 14698210 14779231 + 102028463 AGCD01033875;AGCD01033876;GBDF01251664;XM_005389229 XP_005389286 MODEL 9031385 ncrna LOC102020544 uncharacterized LOC102020544 NW_004955412 6553663 6556789 - 102020544 AGCD01012677;GBDF01148663;XR_259981 MODEL 10386939 ncrna LOC106147250 uncharacterized LOC106147250 NW_004955533 751099 754705 + 106147250 AGCD01070328;GBDF01154477;XR_001232035 MODEL 8955140 protein-coding LOC102007827 UDP-glucuronosyltransferase 2B17-like NW_004955447 4402579 4413284 - 102007827 AGCD01040717;GBCB01083295;XM_005392819;XM_013518535 XP_005392876;XP_013373989 MODEL 8737853 protein-coding LOC102028882 olfactory receptor 10AG1-like NW_004955511 907666 908631 - 102028882 AGCD01066346;XM_005407951 XP_005408008 MODEL 8907676 protein-coding Spopl speckle type BTB/POZ protein like ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of protein ubiquitination (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Mowat-Wilson syndrome (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog) NW_004955440 5594970 5612677 + 102013549 AGCD01036277;GBCB01004850;XM_005390773;XM_005390774;XM_013517500;XM_013517501 XP_005390830;XP_005390831;XP_013372954;XP_013372955 MODEL 10140531 protein-coding Tnni2 troponin I2, fast skeletal type ENCODES a protein that exhibits actin binding (ortholog); troponin T binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); relaxation of skeletal muscle (ortholog); skeletal muscle contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); Beckwith-Wiedemann syndrome (ortholog); delta beta-thalassemia (ortholog); FOUND IN nucleus (ortholog); troponin complex (ortholog) NW_004955422 13649827 13652342 + 106146249 AGCD01022837;GBDI01010093;XM_005384181 XP_005384238 MODEL 8923275 protein-coding Vsnl1 visinin like 1 INVOLVED IN negative regulation of insulin secretion (ortholog); positive regulation of exocytosis (ortholog); positive regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog) NW_004955469 350983 454264 + 102006330 AGCD01052221;AGCD01052222;AGCD01052223;GBDF01055743;XM_005400324 XP_005400381 MODEL 8966322 pseudo LOC102026190 retinol dehydrogenase 14 pseudogene NW_004955457 6710028 6710786 + 102026190 AGCD01046851 MODEL 10117661 ncrna LOC106149232 uncharacterized LOC106149232 NW_004955440 15130652 15151912 + 106149232 AGCD01036486;GBCB01027680;XR_001235277 MODEL 8916503 pseudo LOC102027644 L-lactate dehydrogenase B chain pseudogene NW_004955481 6935420 6936448 - 102027644 AGCD01057043 MODEL 8803201 protein-coding LOC102022725 prostaglandin-E(2) 9-reductase-like NW_004955429 451636 466116 + 102022725 AGCD01028351;AGCD01028352;AGCD01028353;AGCD01028354;GBCQ01003437;XM_005386854 XP_005386911 MODEL 9012435 ncrna LOC102008944 uncharacterized LOC102008944 NW_004955417 25705054 25707401 - 102008944 AGCD01018493;GBCE01099798;XR_260495 MODEL 8745741 protein-coding Ift27 intraflagellar transport 27 INVOLVED IN cochlea development (ortholog); inner ear receptor cell stereocilium organization (ortholog); intracellular protein transport (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); asphyxiating thoracic dystrophy (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN centrosome (ortholog); cilium (ortholog); cytoplasm (ortholog) NW_004955413 23295549 23310824 - 102021645 AGCD01014329;GBCE01172334;XM_005379168;XM_013511657;XM_013511658;XM_013511659;XR_001233043 XP_005379225;XP_013367111;XP_013367112;XP_013367113 MODEL 8911864 protein-coding Tnni3 troponin I3, cardiac type ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); calcium channel inhibitor activity (ortholog); INVOLVED IN cardiac muscle contraction (ortholog); heart contraction (ortholog); heart development (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2L (ortholog); cardiac amyloidosis (ortholog); FOUND IN cardiac myofibril (ortholog); cardiac Troponin complex (ortholog); contractile muscle fiber (ortholog) NW_004955567 1037325 1042102 + 102004865 AGCD01074455;GBDK01181107;XM_005413355 XP_005413412 MODEL 8970631 ncrna LOC102003456 uncharacterized LOC102003456 NW_004955492 6404109 6413616 + 102003456 AGCD01060766;GBDF01016640;XR_001231259;XR_001231260;XR_264055 MODEL 8919827 protein-coding Gps1 G protein pathway suppressor 1 INVOLVED IN protein deneddylation (ortholog); FOUND IN COP9 signalosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955506 1105157 1110129 - 102016730 AGCD01065245;GBBH01090750;XM_005407221;XM_005407223;XM_005407224;XM_013506096 XP_005407278;XP_005407280;XP_005407281;XP_013361550 MODEL 9012847 pseudo LOC102022730 60S acidic ribosomal protein P1-like NW_004955432 1232045 1232422 + 102022730 AGCD01030588 MODEL 8882025 protein-coding Kptn kaptin, actin binding protein ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to glucose starvation (ortholog); negative regulation of TORC1 signaling (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 41 (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN filamentous actin (ortholog); KICSTOR complex (ortholog); lamellipodium (ortholog) NW_004955574 1321356 1329132 - 102012482 AGCD01075174;GBDI01217052;XM_005413878 XP_005413935 MODEL 8751534 protein-coding Espnl espin like ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN sensory perception of sound (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN stereocilium tip (ortholog) NW_004955542 2430610 2453738 - 102028235 AGCD01071522;GBBH01227849;XM_005411198 XP_005411255 MODEL 8760239 protein-coding Ift43 intraflagellar transport 43 INVOLVED IN cilium assembly (ortholog); intraciliary retrograde transport (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); asphyxiating thoracic dystrophy (ortholog); connective tissue disease (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); ciliary basal body (ortholog) NW_004955438 58503 144675 + 102027232 AGCD01034940;AGCD01034941;GBBH01062070;XM_005390147 XP_005390204 MODEL 8947506 protein-coding Slc1a6 solute carrier family 1 member 6 ENCODES a protein that exhibits glutamate:sodium symporter activity (ortholog); high-affinity L-glutamate transmembrane transporter activity (ortholog); L-aspartate transmembrane transporter activity (ortholog); INVOLVED IN establishment of localization in cell (ortholog); L-aspartate import across plasma membrane (ortholog); L-glutamate import across plasma membrane (ortholog); FOUND IN glutamatergic synapse (ortholog); Golgi apparatus (ortholog); intermediate filament cytoskeleton (ortholog) NW_004955495 8270601 8314874 + 102014259 AGCD01062195;AGCD01062196;AGCD01062197;AGCD01062198;GBDF01224187;XM_005406101;XM_005406102;XM_005406103;XM_005406104 XP_005406158;XP_005406159;XP_005406160;XP_005406161 MODEL 10338219 ncrna LOC106147251 uncharacterized LOC106147251 NW_004955408 6049510 6052132 - 106147251 AGCD01008162;GBDI01238852;XR_001232046;XR_001232047 MODEL 8758567 protein-coding LOC102022737 trace amine-associated receptor 6 NW_004955436 13139545 13140576 + 102022737 AGCD01033854;XM_005389212 XP_005389269 MODEL 8937284 protein-coding Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor INVOLVED IN positive regulation of TORC1 signaling (ortholog); protein-RNA complex assembly (ortholog); regulation of androgen receptor signaling pathway (ortholog); ASSOCIATED WITH dystonia 35, childhood-onset (ortholog); NEURODEVELOPMENTAL DISORDER WITH DYSTONIA AND SEIZURES (ortholog); FOUND IN Cajal body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955421 15358387 15455534 + 102027862 AGCD01021980;GBCE01080321;XM_005383768;XM_005383769 XP_005383825;XP_005383826 MODEL 8954454 protein-coding Scaf4 SR-related CTD associated factor 4 ENCODES a protein that exhibits RNA binding (ortholog); RNA polymerase II C-terminal domain phosphoserine binding (ortholog); INVOLVED IN mRNA processing (ortholog); negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); developmental and epileptic encephalopathy 11 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 31269673 31303823 - 102014011 AGCD01007645;GBCE01044750;GBDK01185429;XM_013504099 XP_013359553 MODEL 9033730 protein-coding Rp1 RP1 axonemal microtubule associated ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN axoneme assembly (ortholog); cellular response to light stimulus (ortholog); photoreceptor cell development (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; ASSOCIATED WITH breast ductal carcinoma (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN axoneme (ortholog); ciliary tip (ortholog); cilium (ortholog) NW_004955454 13781556 14082310 + 102008695 AGCD01045453;AGCD01045454;AGCD01045455;AGCD01045456;AGCD01045457;AGCD01045458;AGCD01045459;AGCD01045460;AGCD01045461;GBBH01064691;GBDI01218824;XM_013520200 XP_013375654 MODEL 8912971 protein-coding Bod1l1 biorientation of chromosomes in cell division 1 like 1 INVOLVED IN DNA damage response (ortholog); replication fork processing (ortholog); FOUND IN nucleoplasm (ortholog); Set1C/COMPASS complex (ortholog) NW_004955480 10143053 10189194 + 102025577 AGCD01056757;GBCE01104986;GBDF01162845;XM_013503319 XP_013358773 MODEL 8817279 protein-coding Spout1 SPOUT domain containing methyltransferase 1 ENCODES a protein that exhibits miRNA binding (ortholog); rRNA (uridine-N3-)-methyltransferase activity (ortholog); S-adenosyl-L-methionine binding (ortholog); INVOLVED IN maintenance of centrosome location (ortholog); miRNA processing (ortholog); post-transcriptional regulation of gene expression (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN kinetochore (ortholog); mitotic spindle (ortholog); spindle pole centrosome (ortholog) NW_004955570 1202987 1211052 - 102009666 AGCD01074799;GBCB01075115;XM_005413588 XP_005413645 MODEL 9006572 ncrna LOC102021816 uncharacterized LOC102021816 NW_004955447 11714605 11734638 + 102021816 AGCD01040914;AGCD01040915;AGCD01040916;GBDF01081165;XR_262420 MODEL 10302045 pseudo LOC106149667 cyclic AMP-dependent transcription factor ATF-6 alpha pseudogene NW_004955405 38450534 38452779 + 106149667 AGCD01005477 MODEL 8835970 protein-coding Nfe2 nuclear factor, erythroid 2 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN bone mineralization (ortholog); cell population proliferation (ortholog); cell-cell signaling (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN nucleus (ortholog); protein-DNA complex (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955458 1541765 1552323 - 102005011 AGCD01047190;AGCD01047191;GBBH01012124;XM_013520794 XP_013376248 MODEL 8969019 pseudo LOC102021822 uncharacterized LOC102021822 NW_004955449 1866887 1881411 + 102021822 AGCD01041814 MODEL 8704236 protein-coding LOC102004604 olfactory receptor 1N1-like NW_004955419 5180021 5180950 - 102004604 AGCD01019787;XM_013513100 XP_013368554 MODEL 8996131 protein-coding LOC102024768 guanine nucleotide-binding protein-like 3 NW_004955409 24482166 24484293 + 102024768 AGCD01010084;GBDK01278048;XM_005376910 XP_005376967 MODEL 8909883 protein-coding Scaf8 SR-related CTD associated factor 8 ENCODES a protein that exhibits protein domain specific binding (ortholog); RNA binding (ortholog); RNA polymerase binding (ortholog); INVOLVED IN mRNA processing (ortholog); negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled (ortholog); positive regulation of DNA-templated transcription, elongation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); FOUND IN nuclear matrix (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955439 7282264 7361855 - 102021599 AGCD01035764;AGCD01035765;AGCD01035766;GBBH01052180;GBDJ01312307;XM_013517331 XP_013372785 MODEL 8955966 protein-coding Pprc1 PPARG related coactivator 1 ASSOCIATED WITH prostate cancer (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955485 8200855 8217373 - 102021669 AGCD01058699;GBDF01223065;XM_005403859;XM_013504112;XM_013504113;XM_013504114;XM_013504115 XP_005403916;XP_013359566;XP_013359567;XP_013359568;XP_013359569 MODEL 10306024 ncrna LOC106149668 uncharacterized LOC106149668 NW_004955451 2422546 2424342 - 106149668 AGCD01043008;GBDK01254588;XR_001235978 MODEL 8767100 pseudo LOC102017259 40S ribosomal protein SA pseudogene NW_004955504 5078215 5079108 + 102017259 AGCD01064895;XR_264295 MODEL 39132704 snrna U6 U6 spliceosomal RNA 8840528 pseudo LOC102021823 isocitrate dehydrogenase [NADP], mitochondrial pseudogene NW_004955402 16758485 16759946 + 102021823 AGCD01000488 MODEL 8781922 ncrna LOC102005000 uncharacterized LOC102005000 NW_004956010 5739 9937 - 102005000 AGCD01078868;GBDF01006044;XR_265201 MODEL 8830520 protein-coding LOC102004605 histone H2A type 1 NW_004955483 970650 971254 - 102004605 AGCD01057638;GBDF01049962;XM_013503794 XP_013359248 MODEL 9028340 protein-coding Tatdn2 TatD DNase domain containing 2 ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); myoclonic-atonic epilepsy (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955561 1653471 1673260 + 102018344 AGCD01073859;AGCD01073860;AGCD01073861;GBCQ01005537;GBDF01127617;XM_005413068 XP_005413125 MODEL 8979221 protein-coding Utp14a UTP14A small subunit processome component ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Charcot-Marie-Tooth disease type X (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog) NW_004955473 5100924 5125107 - 102011982 AGCD01053967;GBDI01178844;XM_005401255 XP_005401312 MODEL 8804283 protein-coding Shroom1 shroom family member 1 ENCODES a protein that exhibits actin filament binding (ortholog); myosin II binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); cell morphogenesis (ortholog); ASSOCIATED WITH COVID-19 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955408 4194296 4218616 - 102016242 AGCD01008091;AGCD01008092;AGCD01008093;AGCD01008094;GBBH01224044;GBCE01081633;XM_013507376 XP_013362830 MODEL 9011113 protein-coding LOC102012883 putative olfactory receptor 5AK3 NW_004955511 2055889 2056836 + 102012883 AGCD01066387;XM_005407982 XP_005408039 MODEL 8752149 protein-coding LOC102003224 olfactory receptor 151-like NW_004955412 25576967 25577911 + 102003224 AGCD01013160;XM_005378654 XP_005378711 MODEL 10304406 ncrna LOC106149523 uncharacterized LOC106149523 NW_004955448 14238364 14243707 + 106149523 AGCD01041628;GBDF01094987;XR_001235769 MODEL 8818532 protein-coding Tgfb1i1 transforming growth factor beta 1 induced transcript 1 ENCODES a protein that exhibits I-SMAD binding (ortholog); nuclear androgen receptor binding (ortholog); Roundabout binding (ortholog); INVOLVED IN cell fate commitment (ortholog); epithelial cell differentiation (ortholog); fat cell differentiation (ortholog); ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); FOUND IN cytosol (ortholog); focal adhesion (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955493 8309480 8315378 + 102007026 AGCD01061290;AGCD01061291;GBDK01133943;XM_005405320;XM_005405322;XM_013504900;XM_013504901;XM_013504902;XM_013504903 XP_005405377;XP_005405379;XP_013360354;XP_013360355;XP_013360356;XP_013360357 MODEL 8914525 protein-coding Yju2b YJU2 splicing factor homolog B INVOLVED IN response to virus (ortholog) NW_004955415 32560182 32584747 + 102003761 AGCD01016726;GBDF01089311;XM_005381059;XM_005381060;XM_005381063 XP_005381116;XP_005381117;XP_005381120 MODEL 8810579 protein-coding LOC102016218 serum albumin-like NW_004955402 63514382 63519795 + 102016218 AGCD01001675;AGCD01001676;GBCE01018604;GBDK01185460;XM_013512233 XP_013367687 MODEL 8720712 protein-coding Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN cytoplasmic translation (ortholog); response to insecticide (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Brain Injuries (ortholog); colon carcinoma (ortholog); Diabetic Nephropathies (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic large ribosomal subunit (ortholog) NW_004955524 3007074 3009886 - 102027224 AGCD01068849;GBDK01005256;XM_005409587;XM_005409588 XP_005409644;XP_005409645 MODEL 39132576 snrna U6 U6 spliceosomal RNA 10143980 ncrna LOC106149524 uncharacterized LOC106149524 NW_004955448 734902 736484 - 106149524 AGCD01041237;XR_001235770 MODEL 8739207 protein-coding LOC102024769 KAT8 regulatory NSL complex subunit 2-like NW_004955409 35861135 35862428 + 102024769 AGCD01010435;XM_013510262 XP_013365716 MODEL 8837222 protein-coding Lrrc19 leucine rich repeat containing 19 ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN host-mediated regulation of intestinal microbiota composition (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of non-canonical NF-kappaB signal transduction (ortholog); FOUND IN plasma membrane (ortholog) NW_004955472 7841459 7850906 + 102026967 AGCD01053632;GBCQ01066517;XM_005401155 XP_005401212 MODEL 8748384 protein-coding Scai suppressor of cancer cell invasion ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN negative regulation of cell migration (ortholog); negative regulation of Rho protein signal transduction (ortholog); FOUND IN cytoplasm (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955419 3137745 3296460 + 102019808 AGCD01019707;AGCD01019708;AGCD01019709;AGCD01019710;AGCD01019711;AGCD01019712;AGCD01019713;AGCD01019714;AGCD01019715;AGCD01019716;AGCD01019717;GBDF01047983;XM_005382478;XM_005382479;XM_013513153;XR_260604 XP_005382535;XP_005382536;XP_013368607 MODEL 8954233 protein-coding Ppt1 palmitoyl-protein thioesterase 1 ENCODES a protein that exhibits long-chain fatty acyl-CoA hydrolase activity (ortholog); lysophosphatidic acid binding (ortholog); palmitoyl-(protein) hydrolase activity (ortholog); INVOLVED IN adult locomotory behavior (ortholog); associative learning (ortholog); brain development (ortholog); PARTICIPATES IN fatty acid elongation pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); congenital myopathy 1A (ortholog); COVID-19 (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); extracellular region (ortholog) NW_004955452 17518345 17549112 - 102003937 AGCD01044558;AGCD01044559;GBDF01128197;XM_005395273;XM_013519551 XP_005395330;XP_013375005 MODEL 10080987 ncrna LOC106149233 uncharacterized LOC106149233 NW_004955440 11046882 11078965 + 106149233 AGCD01036401;GBDK01107027;XR_001235278;XR_001235279;XR_001235280 MODEL 8923645 protein-coding Dio3 iodothyronine deiodinase 3 ENCODES a protein that exhibits thyroxine 5'-deiodinase activity (ortholog); thyroxine 5-deiodinase activity (ortholog); INVOLVED IN apoptotic process (ortholog); brown fat cell proliferation (ortholog); positive regulation of multicellular organism growth (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Breast Neoplasms (ortholog); congestive heart failure (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog) NW_004955538 1042949 1045038 + 102022013 AGCD01071043;GBCE01078884;XM_005415334 XP_005415391 MODEL 9034222 protein-coding Esr1 estrogen receptor 1 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); ATPase binding (ortholog); beta-catenin binding (ortholog); INVOLVED IN androgen metabolic process (ortholog); antral ovarian follicle growth (ortholog); baculum development (ortholog); PARTICIPATES IN bisphenol A response pathway; estrogen signaling pathway; follicle-stimulating hormone signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Alzheimer's disease (ortholog); Animal Disease Models (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); euchromatin (ortholog) NW_004955439 9588631 9953606 - 102028019 AGCD01035840;AGCD01035841;AGCD01035842;AGCD01035843;AGCD01035844;AGCD01035845;AGCD01035846;GBCB01061195;XM_005390573;XM_005390574;XM_013517315 XP_005390630;XP_005390631;XP_013372769 MODEL 9038604 protein-coding LOC102022741 flocculation protein FLO11-like NW_004955532 1763410 1767680 - 102022741 AGCD01070200;GBDF01046501;XM_005410235 XP_005410292 MODEL 8884473 protein-coding Lcmt1 leucine carboxyl methyltransferase 1 ENCODES a protein that exhibits protein C-terminal carboxyl O-methyltransferase activity (ortholog); protein methyltransferase activity (ortholog); INVOLVED IN C-terminal protein methylation (ortholog); negative regulation of protein-containing complex assembly (ortholog); protein methylation (ortholog); ASSOCIATED WITH Embryo Loss (ortholog); FOUND IN cytosol (ortholog) NW_004955493 3440832 3499658 + 102030433 AGCD01060997;AGCD01060998;AGCD01060999;GBDF01082047;XM_005405126;XM_005405127;XM_013504899 XP_005405183;XP_005405184;XP_013360353 MODEL 9058235 pseudo LOC102024770 cytochrome c-like NW_004955460 9994664 9994982 - 102024770 AGCD01048566 MODEL 9008564 pseudo LOC102003467 laccase domain-containing protein 1 pseudogene NW_004955425 25984730 25986065 - 102003467 AGCD01025940 MODEL 8770359 protein-coding Spp1 secreted phosphoprotein 1 ENCODES a protein that exhibits extracellular matrix binding (ortholog); integrin binding (ortholog); small molecule binding (ortholog); INVOLVED IN androgen catabolic process (ortholog); bone mineralization (ortholog); calcium ion homeostasis (ortholog); PARTICIPATES IN c-Jun N-terminal kinases MAPK signaling pathway; diabetic nephropathy pathway; fibroblast growth factor signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); adenocarcinoma (ortholog); Albuminuria (ortholog); FOUND IN apical part of cell (ortholog); cell projection (ortholog); cytoplasm (ortholog) NW_004955474 1914477 1922025 - 102012955 AGCD01054271;GBDI01224243;XM_005401330;XM_005401331;XM_013502779;XM_013502780 XP_005401387;XP_005401388;XP_013358233;XP_013358234 MODEL 8941615 protein-coding LOC102012885 olfactory receptor 1052-like NW_004955511 1009362 1010300 + 102012885 AGCD01066353;XM_005408220 XP_005408277 MODEL 8769203 protein-coding Tatdn3 TatD DNase domain containing 3 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955406 4741448 4764410 - 102019136 AGCD01005702;AGCD01005703;AGCD01005704;GBDI01353936;XM_005374737;XM_005374738 XP_005374794;XP_005374795 MODEL 8993926 pseudo LOC102003226 ubiquitin-conjugating enzyme E2 G1 pseudogene NW_004955413 33482340 33483687 - 102003226 AGCD01014672 MODEL 8785547 protein-coding Mllt3 MLLT3 super elongation complex subunit ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); histone H3K18ac reader activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); gene expression (ortholog); hematopoietic stem cell differentiation (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH Diabetic Nephropathies (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955434 22594681 22873826 - 102029659 AGCD01032680;AGCD01032681;AGCD01032682;AGCD01032683;AGCD01032684;AGCD01032685;AGCD01032686;AGCD01032687;GBDF01007293;GBDF01007303;XM_005388737 XP_005388794 MODEL 8800844 protein-coding Gps2 G protein pathway suppressor 2 ENCODES a protein that exhibits cyclin binding (ortholog); transcription coactivator activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN B cell differentiation (ortholog); negative regulation of B cell receptor signaling pathway (ortholog); negative regulation of fat cell differentiation (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955467 9600829 9604148 + 102021866 AGCD01051519;GBDI01060015;XM_005399523;XM_005399524;XM_005399525 XP_005399580;XP_005399581;XP_005399582 MODEL 8945752 protein-coding Ctso cathepsin O NW_004955471 11201934 11225493 + 102013076 AGCD01053249;AGCD01053250;AGCD01053251;GBDK01128336;XM_005400946;XM_005400947;XM_013522905 XP_005401003;XP_005401004;XP_013378359 MODEL 8994743 protein-coding Spp2 secreted phosphoprotein 2 INVOLVED IN protein-containing complex assembly (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); Joubert syndrome 22 (ortholog); Perlman syndrome (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955453 2130606 2158603 - 102003726 AGCD01044623;GBDI01278106;XM_005395331 XP_005395388 MODEL 9009845 protein-coding LOC102017261 methyl-CpG-binding domain protein 2-like NW_004955508 3893058 3893695 + 102017261 AGCD01065844;GBDF01044469;XM_013506248 XP_013361702 MODEL 8875344 protein-coding LOC102004294 cytochrome P450 4F22 ENCODES a protein that exhibits monooxygenase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); ASSOCIATED WITH atopic dermatitis (ortholog); autism spectrum disorder (ortholog); autosomal recessive congenital ichthyosis (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955495 7730881 7763684 - 102004294 AGCD01062162;AGCD01062163;GBDF01280840;XM_005406064;XM_013505318 XP_005406121;XP_013360772 MODEL 10063797 pseudo LOC106149669 tigger transposable element-derived protein 1-like NW_004955402 6295775 6296722 + 106149669 AGCD01000155 MODEL 8861143 protein-coding Ykt6 YKT6 v-SNARE homolog ENCODES a protein that exhibits protein-cysteine S-palmitoyltransferase activity (ortholog); SNAP receptor activity (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); retrograde transport, endosome to Golgi (ortholog); vesicle docking involved in exocytosis (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN apical dendrite (ortholog); basal dendrite (ortholog); cytoplasm (ortholog) NW_004955456 7764125 7776429 - 102020420 AGCD01046431;GBDI01128538;XM_005396667;XM_005396668 XP_005396724;XP_005396725 MODEL 8750318 protein-coding Tax1bp1 Tax1 binding protein 1 ENCODES a protein that exhibits kinase binding (ortholog); protein-macromolecule adaptor activity (ortholog); signaling adaptor activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of cytoplasmic pattern recognition receptor signaling pathway (ortholog); negative regulation of interleukin-1-mediated signaling pathway (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog) NW_004955410 29366295 29445205 + 102009586 AGCD01011290;AGCD01011291;AGCD01011292;GBDI01008216;XM_005377466;XM_005377467;XM_013510614 XP_005377523;XP_005377524;XP_013366068 MODEL 8981881 protein-coding LOC102016221 amine oxidase [flavin-containing] B-like NW_004955832 1753 14560 + 102016221 AGCD01078449;GBCE01162221;XM_005415126 XP_005415183 MODEL 9065288 protein-coding LOC102021828 zinc finger protein 883-like NW_004955624 123806 130903 - 102021828 AGCD01077437;XM_013510160 XP_013365614 MODEL 8881807 pseudo LOC102004607 phosphatidylserine synthase 1 pseudogene NW_004955419 18515166 18516459 - 102004607 AGCD01020175 MODEL 10339763 protein-coding LOC106149670 uncharacterized LOC106149670 NW_004955451 14920162 14921625 - 106149670 AGCD01043583;GBCQ01009944;GBDI01208763;XM_013519326 XP_013374780 MODEL 8809276 protein-coding Ylpm1 YLP motif containing 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of telomere maintenance (ortholog); ASSOCIATED WITH intellectual disability (ortholog); myoepithelioma (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog) NW_004955523 721447 784097 - 102016741 AGCD01068476;AGCD01068477;GBDF01121095;GBDK01234656;XM_013507171 XP_013362625 MODEL 8766439 ncrna LOC102016225 uncharacterized LOC102016225 NW_004955404 11945339 11952147 - 102016225 AGCD01003449;GBBH01075036;XR_259302 MODEL 8841062 protein-coding Dip2a disco interacting protein 2 homolog A ENCODES a protein that exhibits acetate-CoA ligase activity (ortholog); INVOLVED IN acetyl-CoA biosynthetic process (ortholog); dendritic spine morphogenesis (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); FOUND IN cell surface (ortholog); dendritic spine (ortholog); glutamatergic synapse (ortholog) NW_004955407 42857297 42961831 + 102020638 AGCD01007898;AGCD01007899;AGCD01007900;AGCD01007901;AGCD01007902;GBBH01057166;GBCE01095801;XM_005375936 XP_005375993 MODEL 9004357 protein-coding LOC102028883 olfactory receptor 5B3-like NW_004955511 3339841 3340767 - 102028883 AGCD01066459;XM_005408030 XP_005408087 MODEL 8865511 pseudo LOC102003469 integrator complex subunit 10-like NW_004955426 26056064 26062306 + 102003469 AGCD01026736;AGCD01026737 MODEL 8766681 ncrna LOC102026191 uncharacterized LOC102026191 NW_004955408 25236100 25254765 + 102026191 AGCD01008633;AGCD01008634;GBDF01208701;XR_001232069;XR_259716 MODEL 8769677 protein-coding Ift46 intraflagellar transport 46 INVOLVED IN cilium assembly (ortholog); smoothened signaling pathway (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN centrosome (ortholog); cilium (ortholog); cytoplasm (ortholog) NW_004955412 19697995 19710965 - 102012175 AGCD01012969;AGCD01012970;AGCD01012971;GBDF01049816;XM_005378250 XP_005378307 MODEL 39132705 snrna U6 U6 spliceosomal RNA 10081622 protein-coding LOC106149525 serine/arginine repetitive matrix protein 3-like NW_004955448 11093278 11094935 + 106149525 AGCD01041513;GBDI01354810;XM_013518602 XP_013374056 MODEL 8977581 ncrna LOC102008945 uncharacterized LOC102008945 NW_004955418 195005 213629 + 102008945 AGCD01018668;AGCD01018669;GBDF01000281;XR_001233498;XR_001233499 MODEL 8784937 pseudo LOC102003470 L-lactate dehydrogenase A chain pseudogene NW_004955505 1011597 1012538 + 102003470 AGCD01064964 MODEL 8852335 protein-coding LOC102005001 keratin, type I cytoskeletal 14 NW_004955451 15903561 15907545 - 102005001 AGCD01043639;GBCE01032375;XM_005394411 XP_005394468 MODEL 9021965 protein-coding Uba6 ubiquitin like modifier activating enzyme 6 ENCODES a protein that exhibits FAT10 activating enzyme activity (ortholog); ubiquitin activating enzyme activity (ortholog); INVOLVED IN amygdala development (ortholog); dendritic spine development (ortholog); hippocampus development (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog) NW_004955447 5213792 5282266 + 102011376 AGCD01040749;AGCD01040750;GBDF01005553;XM_005392832;XM_005392833;XM_005392834 XP_005392889;XP_005392890;XP_005392891 MODEL 9016185 pseudo LOC102017265 DNA/RNA-binding protein KIN17-like NW_004955433 1919102 1920486 - 102017265 AGCD01031373 MODEL 8869109 protein-coding LOC102023118 olfactory receptor 6C2-like NW_004955458 2974880 2975827 + 102023118 AGCD01047263;XM_005397505 XP_005397562 MODEL 9067309 protein-coding Tnnt1 troponin T1, slow skeletal type ENCODES a protein that exhibits tropomyosin binding (ortholog); troponin T binding (ortholog); INVOLVED IN negative regulation of muscle contraction (ortholog); skeletal muscle contraction (ortholog); slow-twitch skeletal muscle fiber contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH cardiomyopathy (ortholog); dilated cardiomyopathy (ortholog); dilated cardiomyopathy 2A (ortholog); FOUND IN troponin complex (ortholog) NW_004955567 1039625 1050581 + 102004337 AGCD01074455;AGCD01074456;XM_005413353;XM_005413354;XM_013509279;XM_013509280 XP_005413410;XP_005413411;XP_013364733;XP_013364734 MODEL 8814675 protein-coding Scamp1 secretory carrier membrane protein 1 ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN endocytosis (ortholog); establishment of localization in cell (ortholog); exocytosis (ortholog); ASSOCIATED WITH Hermansky-Pudlak syndrome 2 (ortholog); mucopolysaccharidosis VI (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasmic vesicle membrane (ortholog); membrane (ortholog) NW_004955425 22562336 22686661 - 102026340 AGCD01025822;AGCD01025823;AGCD01025824;AGCD01025825;AGCD01025826;AGCD01025827;GBBH01052212;GBDI01227262;XM_013514889 XP_013370343 MODEL 39133566 snrna U2 U2 spliceosomal RNA 8914371 protein-coding LOC102022164 transmembrane protein 198-like NW_004955458 3467969 3473114 + 102022164 AGCD01047303;GBDF01188087;XM_005397262;XM_005397264 XP_005397319;XP_005397321 MODEL 8783939 ncrna LOC102023817 uncharacterized LOC102023817 NW_004955496 352751 356812 + 102023817 AGCD01062225;GBDF01225176;XR_264170 MODEL 8751490 protein-coding Shroom2 shroom family member 2 ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); beta-catenin binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); cell migration (ortholog); cell morphogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Meniere's disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN adherens junction (ortholog); apical junction complex (ortholog); apical plasma membrane (ortholog) NW_004955499 8031961 8103307 + 102027320 AGCD01063614;AGCD01063615;AGCD01063616;GBCQ01149920;GBDJ01063804;XM_013505603;XM_013505604 XP_013361057;XP_013361058 MODEL 8766831 pseudo LOC102005006 cyclin-G1 pseudogene NW_004955454 13232268 13233432 + 102005006 AGCD01045431 MODEL 8992078 protein-coding LOC102024782 mitochondrial import inner membrane translocase subunit Tim13-like NW_004955413 24884672 24885885 + 102024782 AGCD01014385;GBDJ01031557;XM_013511361;XM_013511362;XR_260107 XP_013366815;XP_013366816 MODEL 9049342 protein-coding LOC102021829 HLA class I histocompatibility antigen, B-18 alpha chain-like NW_004955712 7998 9513 - 102021829 AGCD01078145;XM_013510181 XP_013365635 MODEL 8794366 protein-coding Znf573 zinc finger protein 573 NW_004955468 1522438 1596488 - 102023890 AGCD01051775;AGCD01051776;AGCD01051777;AGCD01051778;GBCQ01009337;XM_013522448;XM_013522449;XM_013522450;XM_013522451;XM_013522452;XM_013522453;XM_013522454 XP_013377902;XP_013377903;XP_013377904;XP_013377905;XP_013377906;XP_013377907;XP_013377908 MODEL 10391239 ncrna LOC106149671 uncharacterized LOC106149671 NW_004955451 13762868 13766276 + 106149671 AGCD01043503;GBDF01049359;XR_001235983 MODEL 8701022 protein-coding Yme1l1 YME1 like 1 ATPase ENCODES a protein that exhibits ATP-dependent peptidase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to starvation (ortholog); mitochondrial protein catabolic process (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); fundus dystrophy (ortholog); long QT syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nuclear body (ortholog) NW_004955429 2550611 2572472 - 102009090 AGCD01028430;GBDF01051277;GBDJ01017421;XM_013515518 XP_013370972 MODEL 8912370 pseudo LOC102027645 zinc finger CCHC domain-containing protein 8 pseudogene NW_004955418 14138866 14140588 + 102027645 AGCD01019064 MODEL 9055052 protein-coding Slc1a7 solute carrier family 1 member 7 ENCODES a protein that exhibits extracellularly glutamate-gated chloride channel activity (ortholog); glutamate:sodium symporter activity (ortholog); L-glutamate transmembrane transporter activity (ortholog); INVOLVED IN chloride transmembrane transport (ortholog); L-glutamate transmembrane transport (ortholog); monoatomic anion transmembrane transport (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN axon terminus (ortholog); glutamatergic synapse (ortholog); photoreceptor cell terminal bouton (ortholog) NW_004955464 6032629 6069483 + 102013395 AGCD01050017;GBBH01023325;XM_005398562 XP_005398619 MODEL 8989259 protein-coding LOC102012891 uncharacterized LOC102012891 NW_004955523 1028153 1037283 - 102012891 AGCD01068489;GBCE01116809;XM_013507151;XR_001231927;XR_001231928;XR_001231929;XR_001231930;XR_001231931;XR_001231932;XR_001231933;XR_001231934;XR_001231935;XR_001231936;XR_001231937 XP_013362605 MODEL 8934376 protein-coding LOC102027203 olfactory receptor 8S1-like NW_004955500 7448692 7449633 - 102027203 AGCD01063924;XM_013505638 XP_013361092 MODEL 8937522 protein-coding Gpsm1 G protein signaling modulator 1 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GDP-dissociation inhibitor activity (ortholog); INVOLVED IN negative regulation of GTPase activity (ortholog); negative regulation of guanyl-nucleotide exchange factor activity (ortholog); positive regulation of macroautophagy (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); alcohol dependence (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); FOUND IN cell cortex (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955513 4363534 4387356 - 102011690 AGCD01066927;GBCE01052148;XM_005408511;XM_005408513;XM_005408516 XP_005408568;XP_005408570;XP_005408573 MODEL 8974637 protein-coding Bok BCL2 family apoptosis regulator BOK ENCODES a protein that exhibits BH domain binding (ortholog); protein dimerization activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN apoptotic process (ortholog); cellular component disassembly involved in execution phase of apoptosis (ortholog); intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog); FOUND IN cis-Golgi network membrane (ortholog); cytoplasm (ortholog); early endosome membrane (ortholog) NW_004955542 224471 232401 - 102007278 AGCD01071464;GBCQ01010517;GBDI01072356;XM_005411124 XP_005411181 MODEL 8968354 protein-coding Rp1l1 RP1 like 1 INVOLVED IN photoreceptor cell development (ortholog); photoreceptor cell maintenance (ortholog); ASSOCIATED WITH Epidermolysis Bullosa Simplex 5D with Nail Dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN axoneme (ortholog); photoreceptor connecting cilium (ortholog); photoreceptor outer segment (ortholog) NW_004955403 52180612 52200569 - 102018793 AGCD01003003;GBDF01013182;XM_005373909 XP_005373966 MODEL 9055111 protein-coding LOC102016228 unconventional myosin-XVI NW_004955404 2942714 3296639 - 102016228 AGCD01003266;AGCD01003267;AGCD01003268;AGCD01003269;GBCE01150866;GBDF01187230;XM_013515827 XP_013371281 MODEL 39131525 protein-coding YOD1 YOD1 deubiquitinase 39132706 snrna U6 U6 spliceosomal RNA 39131479 protein-coding LCMT2 leucine carboxyl methyltransferase 2 8904745 protein-coding Tax1bp3 Tax1 binding protein 3 ENCODES a protein that exhibits beta-catenin binding (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); negative regulation of protein localization to cell surface (ortholog); negative regulation of Wnt signaling pathway (ortholog); ASSOCIATED WITH Abderhalden-Kaufmann-Lignac Syndrome (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); Canavan disease (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); fibrillar center (ortholog) NW_004955467 13146527 13151109 + 102022271 AGCD01051667;GBDF01120348;XM_005399723 XP_005399780 MODEL 8859950 protein-coding Utp15 UTP15 small subunit processome component INVOLVED IN positive regulation of rRNA processing (ortholog); positive regulation of transcription by RNA polymerase I (ortholog); ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); fibrillar center (ortholog) NW_004955425 27018938 27035715 - 102006367 AGCD01025959;GBDJ01277958;XM_005386071;XM_013514869 XP_005386128;XP_013370323 MODEL 8890713 ncrna LOC102016234 uncharacterized LOC102016234 NW_004955407 25388769 25391467 - 102016234 AGCD01007502;XR_259580 MODEL 8736602 protein-coding Bola1 bolA family member 1 ASSOCIATED WITH cataract 46 juvenile-onset (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN iron-sulfur cluster assembly complex (ortholog); mitochondrion (ortholog) NW_004955413 850781 851887 - 102022579 AGCD01013491;GBCE01167501;XM_005378710 XP_005378767 MODEL 8969750 ncrna LOC102025192 uncharacterized LOC102025192 NW_004955402 9308678 9320535 + 102025192 AGCD01000213;GBDF01192767;XR_259045 MODEL 8887143 protein-coding Ypel1 yippee like 1 ASSOCIATED WITH chromosome 22q11.2 deletion syndrome, distal (ortholog); COVID-19 (ortholog); DiGeorge syndrome (ortholog) NW_004955442 17400655 17423896 + 102013764 AGCD01037953;AGCD01037954;AGCD01037955;GBDF01006579;GBDF01006583;XM_013517872;XM_013517873;XM_013517874 XP_013373326;XP_013373327;XP_013373328 MODEL 8765999 pseudo LOC102022167 olfactory receptor 6C6-like NW_004955458 2820776 2842036 + 102022167 AGCD01047245;AGCD01047246;AGCD01047247;AGCD01047248;AGCD01047249 MODEL 8808849 protein-coding Lcmt2 leucine carboxyl methyltransferase 2 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955416 9890208 9892326 - 102004810 AGCD01017099;GBDJ01334253;XM_005381378 XP_005381435 MODEL 39132577 snrna U6 U6 spliceosomal RNA 8961022 protein-coding Shroom3 shroom family member 3 ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); columnar/cuboidal epithelial cell development (ortholog); neural tube closure (ortholog); ASSOCIATED WITH progressive myoclonus epilepsy (ortholog); FOUND IN adherens junction (ortholog); apical junction complex (ortholog); apical part of cell (ortholog) NW_004955433 1135589 1423449 + 102004844 AGCD01031348;AGCD01031349;AGCD01031350;AGCD01031351;AGCD01031352;AGCD01031353;AGCD01031354;AGCD01031355;AGCD01031356;GBBH01187068;XM_013516209 XP_013371663 MODEL 8727623 protein-coding LOC102016240 olfactory receptor 6C4-like NW_004955458 2914387 2916726 - 102016240 AGCD01047255;XM_005397247;XM_013520813 XP_005397304;XP_013376267 MODEL 39131461 protein-coding ZNF573 zinc finger protein 573 8836431 pseudo LOC102022169 small ubiquitin-related modifier 2 pseudogene NW_004955460 13632113 13632539 + 102022169 AGCD01048710 MODEL 8906106 protein-coding Sppl2a signal peptide peptidase like 2A ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); protein homodimerization activity (ortholog); INVOLVED IN membrane protein ectodomain proteolysis (ortholog); membrane protein intracellular domain proteolysis (ortholog); membrane protein proteolysis (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); hereditary spastic paraplegia 51 (ortholog); FOUND IN cytoplasmic side of endoplasmic reticulum membrane (ortholog); Golgi-associated vesicle membrane (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955409 3642113 3670779 + 102027720 AGCD01009258;AGCD01009259;GBCE01054717;XM_013510290 XP_013365744 MODEL 9064310 protein-coding Ctss cathepsin S ENCODES a protein that exhibits collagen binding (ortholog); cysteine-type endopeptidase activity (ortholog); cysteine-type peptidase activity (ortholog); INVOLVED IN adaptive immune response (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); antigen processing and presentation of peptide antigen (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); atherosclerosis (ortholog); carotid artery disease (ortholog); FOUND IN cell surface (ortholog); extracellular space (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955413 99279 124793 + 102007752 AGCD01013438;GBDI01062469;XM_005378661;XM_005378662 XP_005378718;XP_005378719 MODEL 8938024 protein-coding Lcn10 lipocalin 10 INVOLVED IN heart development (ortholog); inflammatory response (ortholog); macrophage activation (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog) NW_004955513 4063245 4066160 + 102030556 AGCD01066914;XM_005408481 XP_005408538 MODEL 8867495 protein-coding Gpsm2 G protein signaling modulator 2 ENCODES a protein that exhibits dynein complex binding (ortholog); G-protein alpha-subunit binding (ortholog); GDP-dissociation inhibitor activity (ortholog); INVOLVED IN establishment of mitotic spindle orientation (ortholog); maintenance of centrosome location (ortholog); mitotic spindle organization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive nonsyndromic deafness (ortholog); Chudley-Mccullough syndrome (ortholog); FOUND IN cell cortex (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955435 12334462 12387262 + 102020701 AGCD01033144;AGCD01033145;AGCD01033146;AGCD01033147;GBDF01043863;XM_013516518 XP_013371972 MODEL 9013900 protein-coding Znf574 zinc finger protein 574 ASSOCIATED WITH Carpenter syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); COVID-19 (ortholog) NW_004955555 798779 804608 - 102004755 AGCD01073049;GBCB01089317;XM_005412398;XM_005412399 XP_005412455;XP_005412456 MODEL 39133568 snrna U2 U2 spliceosomal RNA 9018929 protein-coding Nsf N-ethylmaleimide sensitive factor, vesicle fusing ATPase ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent protein binding (ortholog); D1 dopamine receptor binding (ortholog); INVOLVED IN intracellular protein transport (ortholog); positive regulation of protein catabolic process (ortholog); positive regulation of receptor recycling (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); developmental and epileptic encephalopathy 96 (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytosol (ortholog); dendritic shaft (ortholog); GABA-ergic synapse (ortholog) NW_004955478 10610715 10732656 + 102017870 AGCD01056140;AGCD01056141;AGCD01056142;AGCD01056143;AGCD01056144;AGCD01056145;AGCD01056146;GBCE01188483;GBDF01162589;XM_005402272 XP_005402329 MODEL 8841017 protein-coding Uba7 ubiquitin like modifier activating enzyme 7 ENCODES a protein that exhibits ISG15 activating enzyme activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN innate immune response (ortholog); ISG15-protein conjugation (ortholog); modification-dependent protein catabolic process (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytoplasm (ortholog) NW_004955532 1697667 1706668 - 102019731 AGCD01070198;GBDJ01141321;XM_005410223;XM_013507599;XM_013507600;XM_013507601;XM_013507602 XP_005410280;XP_013363053;XP_013363054;XP_013363055;XP_013363056 MODEL 8928672 protein-coding Tnnt2 troponin T2, cardiac type ENCODES a protein that exhibits actin binding (ortholog); identical protein binding (ortholog); microfilament motor activity (ortholog); INVOLVED IN actin crosslink formation (ortholog); atrial cardiac muscle tissue morphogenesis (ortholog); cardiac muscle contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); beta thalassemia (ortholog); Cardiomegaly (ortholog); FOUND IN cardiac myofibril (ortholog); cardiac Troponin complex (ortholog); myofibril (ortholog) NW_004955406 37491462 37507360 - 102012924 AGCD01006576;GBDJ01136129;XM_005375170;XM_005375171;XM_005375172;XM_005375175;XM_005375176;XM_005375177;XM_005375179;XM_005375180;XM_013522177;XM_013522187;XM_013522212 XP_005375227;XP_005375228;XP_005375229;XP_005375232;XP_005375233;XP_005375234;XP_005375236;XP_005375237;XP_013377631;XP_013377641;XP_013377666 MODEL 9030806 protein-coding LOC102024783 taste receptor type 2 member 140-like NW_004955413 8187058 8188005 - 102024783 AGCD01013854;XM_005379631 XP_005379688 MODEL 8854999 ncrna LOC102028884 uncharacterized LOC102028884 NW_004955430 747808 768242 - 102028884 AGCD01029104;AGCD01029105;AGCD01029106;GBDF01090139;XR_001234546;XR_261401;XR_261402 MODEL 9024050 protein-coding Tbata thymus, brain and testes associated ASSOCIATED WITH Hirschsprung's disease (ortholog); FOUND IN ciliary basal body (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955437 20569644 20586405 + 102009759 AGCD01034877;GBBH01187342;XM_005390044;XM_005390045;XM_005390046;XM_005390047;XM_013517111;XM_013517112 XP_005390101;XP_005390102;XP_005390103;XP_005390104;XP_013372565;XP_013372566 MODEL 10262076 protein-coding LOC106149672 uncharacterized LOC106149672 NW_004955451 13787390 13788617 - 106149672 AGCD01043504;GBDJ01145421;GBDJ01247322;XM_013519372 XP_013374826 MODEL 8809209 protein-coding Nsfl1c NSFL1 cofactor ENCODES a protein that exhibits ATPase binding (ortholog); phospholipid binding (ortholog); ubiquitin binding (ortholog); INVOLVED IN establishment of mitotic spindle orientation (ortholog); Golgi organization (ortholog); membrane fusion (ortholog); FOUND IN cytosol (ortholog); spindle pole centrosome (ortholog); VCP-NSFL1C complex (ortholog) NW_004955596 648978 673586 - 102016007 AGCD01076525;GBDK01127037;XM_005414707;XM_005414708 XP_005414764;XP_005414765 MODEL 8872998 protein-coding Ubac1 UBA domain containing 1 ENCODES a protein that exhibits polyubiquitin modification-dependent protein binding (ortholog); proteasome binding (ortholog); INVOLVED IN protein maturation (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955513 4620978 4640318 + 102017905 AGCD01066936;AGCD01066937;GBBH01092540;GBDF01004153;XM_005408533 XP_005408590 MODEL 10116221 ncrna LOC106149526 uncharacterized LOC106149526 NW_004955448 11183691 11192470 + 106149526 AGCD01041517;GBDF01287950;XR_001235771 MODEL 8815736 protein-coding LOC102012892 uncharacterized LOC102012892 NW_004955526 2993975 3028797 + 102012892 AGCD01069325;AGCD01069326;XM_013507354 XP_013362808 MODEL 8832712 pseudo LOC102027204 tubulin polyglutamylase complex subunit 2 pseudogene NW_004955501 4803413 4805642 - 102027204 AGCD01064145 MODEL 39132578 snrna U6 U6 spliceosomal RNA 10360997 ncrna LOC106149673 uncharacterized LOC106149673 NW_004955451 15104949 15124998 + 106149673 AGCD01043596;GBBH01006860;XR_001235985;XR_001235986;XR_001235987 MODEL 8895009 protein-coding LOC102022746 polyamine-modulated factor 1 NW_004955545 2365047 2379720 + 102022746 AGCD01071898;GBCQ01129495;XM_005411660 XP_005411717 MODEL 9065147 protein-coding Tssk6 testis specific serine kinase 6 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN flagellated sperm motility (ortholog); peptidyl-serine phosphorylation (ortholog); protein phosphorylation (ortholog); FOUND IN axonemal microtubule doublet inner sheath (ortholog); sperm flagellum (ortholog) NW_004955524 2433855 2434864 + 102014164 AGCD01068818;GBDF01008291;XM_005409638 XP_005409695 MODEL 8859677 protein-coding Vstm1 V-set and transmembrane domain containing 1 NW_004955604 357643 358615 - 102021826 AGCD01076892;GBBH01115348;GBBH01115368;XM_013510096 XP_013365550 MODEL 8909023 protein-coding Ubac2 UBA domain containing 2 INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); protein localization to endoplasmic reticulum (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); basal cell carcinoma (ortholog); holoprosencephaly (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955404 11205972 11357370 - 102013042 AGCD01003416;AGCD01003417;AGCD01003418;AGCD01003419;GBDF01001567;XM_005374065 XP_005374122 MODEL 8780571 ncrna LOC102003227 uncharacterized LOC102003227 NW_004955469 7027260 7028336 + 102003227 AGCD01052404;GBBH01203178;XR_263433 MODEL 8773973 protein-coding LOC102012894 A-kinase anchor protein 17B-like NW_004955534 648006 696921 + 102012894 AGCD01070461;AGCD01070462;AGCD01070463;AGCD01070464;AGCD01070465;AGCD01070466;AGCD01070467;GBBH01217459;XM_005410447;XM_005410448 XP_005410504;XP_005410505 MODEL 8910558 protein-coding Gpsm3 G protein signaling modulator 3 INVOLVED IN positive regulation of cytokine production involved in inflammatory response (ortholog); positive regulation of inflammatory response (ortholog); positive regulation of leukocyte chemotaxis (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955437 654475 656335 - 102016634 AGCD01034153;GBDJ01190051;XM_005389440 XP_005389497 MODEL 8743684 protein-coding Znf575 zinc finger protein 575 ASSOCIATED WITH ethylmalonic encephalopathy (ortholog); schizophrenia (ortholog) NW_004955555 1286365 1291073 + 102016429 AGCD01073070;GBDI01291797;XM_005412441 XP_005412498 MODEL 8770728 pseudo LOC102026195 prostaglandin E synthase 3 pseudogene NW_004955411 26287802 26288889 + 102026195 AGCD01012178 MODEL 10065049 ncrna LOC106149234 uncharacterized LOC106149234 NW_004955441 4238542 4241612 + 106149234 AGCD01036837;GBCE01177931;XR_001235284 MODEL 8755165 protein-coding Lrrc2 leucine rich repeat containing 2 INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); ASSOCIATED WITH Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog) NW_004955420 25492277 25528530 + 102024805 AGCD01021363;AGCD01021364;AGCD01021365;GBDF01266882;GBDJ01107392;XM_013513588 XP_013369042 MODEL 8933062 pseudo LOC102004295 coiled-coil domain-containing protein 94 pseudogene NW_004955423 23602366 23603386 + 102004295 AGCD01024009 MODEL 8970363 protein-coding Nolc1 nucleolar and coiled-body phosphoprotein 1 ENCODES a protein that exhibits box C/D methylation guide snoRNP complex binding (ortholog); box C/D sno(s)RNA binding (ortholog); box H/ACA snoRNA binding (ortholog); INVOLVED IN axonogenesis (ortholog); box H/ACA sno(s)RNA metabolic process (ortholog); neural crest cell development (ortholog); FOUND IN box C/D methylation guide snoRNP complex (ortholog); box H/ACA snoRNP complex (ortholog); Cajal body (ortholog) NW_004955485 8187078 8197952 - 102020450 AGCD01058699;GBCE01054309;XM_005403854;XM_005403856 XP_005403911;XP_005403913 MODEL 9052553 ncrna LOC102004298 uncharacterized LOC102004298 NW_004955425 26216844 26372863 + 102004298 AGCD01025943;AGCD01025944;AGCD01025945;AGCD01025946;AGCD01025947;AGCD01025948;GBDK01344416;XR_001234297;XR_001234298 MODEL 8868029 ncrna LOC102017268 uncharacterized LOC102017268 NW_004955524 3261313 3263158 + 102017268 AGCD01068874;GBDI01279590;XR_001231949;XR_001231950 MODEL 9002103 protein-coding Kras KRAS proto-oncogene, GTPase ENCODES a protein that exhibits GDP binding (ortholog); GMP binding (ortholog); GTPase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cardiac muscle cell proliferation (ortholog); cell population proliferation (ortholog); PARTICIPATES IN altered extracellular signal-regulated Raf/Mek/Erk signaling pathway; colorectal cancer pathway; endometrial cancer pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); membrane (ortholog) NW_004955413 20298852 20328756 - 102029608 AGCD01014212;GBDF01221210;GBDJ01230660;XM_005379100 XP_005379157 MODEL 8964058 protein-coding Tbc1d1 TBC1 domain family member 1 INVOLVED IN negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); regulation of cilium assembly (ortholog); regulation of protein localization (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH CAKUT (ortholog); genetic disease (ortholog); obesity (ortholog) NW_004955443 9045312 9270617 - 102008269 AGCD01038342;AGCD01038343;AGCD01038344;AGCD01038345;AGCD01038346;GBCB01025606;GBCQ01036341;XM_013518063 XP_013373517 MODEL 39132707 snrna U6 U6 spliceosomal RNA 8854358 protein-coding Sel1l2 SEL1L2 adaptor subunit of SYVN1 ubiquitin ligase FOUND IN cilium (ortholog); nuclear speck (ortholog) NW_004955415 23290343 23392613 - 102005797 AGCD01016552;AGCD01016553;GBDK01223152;XM_013512280;XM_013512281 XP_013367734;XP_013367735 MODEL 8880522 protein-coding Scamp2 secretory carrier membrane protein 2 INVOLVED IN protein transport (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); Brugada syndrome 8 (ortholog); FOUND IN Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog); membrane (ortholog) NW_004955450 3070944 3095168 + 102007389 AGCD01042421;AGCD01042422;GBDF01043579;XM_005393533;XM_005393534 XP_005393590;XP_005393591 MODEL 9039068 protein-coding Sppl2b signal peptide peptidase like 2B ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); protein homodimerization activity (ortholog); INVOLVED IN membrane protein ectodomain proteolysis (ortholog); membrane protein intracellular domain proteolysis (ortholog); membrane protein proteolysis (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog); FOUND IN actin cytoskeleton (ortholog); centrosome (ortholog); cytoplasmic side of endoplasmic reticulum membrane (ortholog) NW_004955495 5816979 5829938 - 102013841 AGCD01062035;GBCE01134604;XM_005405903;XM_005405904;XM_013505229;XM_013505231 XP_005405960;XP_005405961;XP_013360683;XP_013360685 MODEL 8931552 protein-coding Ctsv cathepsin V ENCODES a protein that exhibits cysteine-type peptidase activity (ortholog); ASSOCIATED WITH intellectual disability (ortholog) NW_004955422 23722899 23728426 + 102012448 AGCD01023204;AGCD01023205;GBDI01064068;XM_005384704 XP_005384761 MODEL 8919973 protein-coding LOC102021830 keratin-associated protein 3-1 NW_004955451 15429424 15430011 - 102021830 AGCD01043607;XM_005394380 XP_005394437 MODEL 8919289 protein-coding LOC102025195 vomeronasal type-1 receptor 4-like NW_004955584 426988 427899 - 102025195 AGCD01075941;XM_005414411 XP_005414468 MODEL 8952890 protein-coding LOC102017269 vomeronasal type-2 receptor 116-like NW_004955524 2310917 2334613 - 102017269 AGCD01068810;GBDF01162761;XM_005409650 XP_005409707 MODEL 8881072 protein-coding LOC102003231 protocadherin beta-12 NW_004955415 12598599 12600263 - 102003231 AGCD01016205;GBDF01191900;XM_005381127 XP_005381184 MODEL 8969401 protein-coding Ubald1 UBA like domain containing 1 ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); Kohlschutter-Tonz syndrome (ortholog) NW_004955442 12828567 12834355 + 102009887 AGCD01037746;AGCD01037747;GBBH01088467;XM_005391290 XP_005391347 MODEL 8974572 protein-coding Esr2 estrogen receptor 2 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); enzyme binding (ortholog); INVOLVED IN amygdala development (ortholog); androgen receptor signaling pathway (ortholog); behavioral fear response (ortholog); PARTICIPATES IN bisphenol A response pathway; estrogen signaling pathway; tamoxifen pharmacodynamics pathway; ASSOCIATED WITH adenocarcinoma (ortholog); adenoma (ortholog); alopecia (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); mitochondrion (ortholog) NW_004955466 5587003 5644765 + 102004260 AGCD01050885;GBDF01079691;XM_005399136;XM_013521918 XP_005399193;XP_013377372 MODEL 8999097 protein-coding LOC102024786 vitamin D 25-hydroxylase ENCODES a protein that exhibits D3 vitamins binding (ortholog); heme binding (ortholog); iron ion binding (ortholog); INVOLVED IN calcitriol biosynthetic process from calciol (ortholog); response to cesium ion (ortholog); response to ionizing radiation (ortholog); ASSOCIATED WITH Abdominal Obesity (ortholog); autism spectrum disorder (ortholog); brain infarction (ortholog) NW_004955414 29929130 29948151 - 102024786 AGCD01015720;GBDK01219149;XM_005380334;XM_005380335 XP_005380391;XP_005380392 MODEL 8901590 pseudo LOC102025207 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L pseudogene NW_004955454 3332608 3333948 + 102025207 AGCD01045067 MODEL 8700916 ncrna LOC102004612 uncharacterized LOC102004612 NW_004955422 13845624 13851380 - 102004612 AGCD01022839;GBCE01145779;XR_001233893;XR_260876 MODEL 8917479 protein-coding Ppt2 palmitoyl-protein thioesterase 2 ENCODES a protein that exhibits fatty acyl-CoA hydrolase activity (ortholog); palmitoyl hydrolase activity (ortholog); thiolester hydrolase activity (ortholog); ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog) NW_004955437 609901 630004 + 102014945 AGCD01034151;AGCD01034152;GBDJ01278109;XM_005389433;XM_005389435;XM_005389436;XM_005389437 XP_005389490;XP_005389492;XP_005389493;XP_005389494 MODEL 8747687 protein-coding Nfe2l1 NFE2 like bZIP transcription factor 1 ENCODES a protein that exhibits cholesterol binding (ortholog); chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cell redox homeostasis (ortholog); cellular homeostasis (ortholog); cellular response to cholesterol (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); hepatocellular carcinoma (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955451 13088680 13099839 - 102015914 AGCD01043446;AGCD01043447;AGCD01043448;GBCB01006232;GBDI01004897;XM_013519413 XP_013374867 MODEL 8814664 protein-coding LOC102023119 granzyme B(G,H)-like NW_004955409 35492731 35496027 + 102023119 AGCD01010424;GBDK01074388;XM_005376991 XP_005377048 MODEL 8827123 pseudo LOC102005007 succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial pseudogene NW_004955454 12974527 12986293 + 102005007 AGCD01045425 MODEL 9054588 protein-coding LOC102024788 olfactory receptor 52R1-like NW_004955414 20422239 20423183 - 102024788 AGCD01015372;XM_013511719 XP_013367173 MODEL 9013652 protein-coding Utp18 UTP18 small subunit processome component INVOLVED IN ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN nuclear membrane (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955451 10632407 10663160 - 102025071 AGCD01043328;AGCD01043329;GBBH01229454;XM_005394109 XP_005394166 MODEL 39131439 protein-coding VSTM2A V-set and transmembrane domain containing 2A 8951508 protein-coding Krba1 KRAB-A domain containing 1 NW_004955491 4784536 4805976 + 102014680 AGCD01060463;AGCD01060464;GBBH01030291;XM_005404754;XM_013504642;XM_013504643;XM_013504644;XM_013504645;XM_013504646;XM_013504647;XM_013504648;XM_013504649;XM_013504650 XP_005404811;XP_013360096;XP_013360097;XP_013360098;XP_013360099;XP_013360100;XP_013360101;XP_013360102;XP_013360103;XP_013360104 MODEL 8947675 protein-coding Sel1l3 SEL1L family member 3 NW_004955443 19317461 19406721 + 102019650 AGCD01038624;GBCQ01067499;XM_005392032;XM_013518080 XP_005392089;XP_013373534 MODEL 8973198 protein-coding Sppl2c signal peptide peptidase like 2C ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); aspartic-type endopeptidase activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN acrosome assembly (ortholog); fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); intracellular calcium ion homeostasis (ortholog); ASSOCIATED WITH frontotemporal dementia (ortholog); hereditary breast ovarian cancer syndrome (ortholog); intellectual disability (ortholog); FOUND IN cytoplasmic side of endoplasmic reticulum membrane (ortholog); endoplasmic reticulum membrane (ortholog); lumenal side of endoplasmic reticulum membrane (ortholog) NW_004955478 10368379 10370624 - 102015632 AGCD01056132;GBDF01008849;XM_005402268 XP_005402325 MODEL 8943819 pseudo LOC102024789 60S ribosomal protein L39 pseudogene NW_004955473 607646 607830 - 102024789 AGCD01053847;XM_005401201 MODEL 8976447 protein-coding Ctsw cathepsin W ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog) NW_004955422 19439997 19443451 - 102024811 AGCD01023006;GBDJ01229701;XM_005384446;XM_005384447 XP_005384503;XP_005384504 MODEL 8828538 protein-coding Vstm2a V-set and transmembrane domain containing 2A ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to BMP stimulus (ortholog); positive regulation of brown fat cell differentiation (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH autistic disorder (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN extracellular region (ortholog); nucleus (ortholog) NW_004955456 767303 794635 - 102023556 AGCD01046215;GBDJ01334694;GBDK01416293;XM_005396595 XP_005396652 MODEL 8842380 protein-coding Gpt glutamic--pyruvic transaminase INVOLVED IN cellular response to insulin stimulus (ortholog); positive regulation of gluconeogenesis (ortholog); response to nutrient levels (ortholog); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; alanine metabolic pathway; argininosuccinic aciduria pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Liver Failure (ortholog); Baller-Gerold syndrome (ortholog); FOUND IN extracellular space (ortholog) NW_004955454 3127997 3132459 + 102009143 AGCD01045057;GBDK01138966;XM_005395897 XP_005395954 MODEL 9002482 protein-coding Krbox1 KRAB box domain containing 1 ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog) NW_004955420 27971780 27976123 - 102019279 AGCD01021465;GBDF01007889;XM_005383507;XM_013513535;XM_013513536 XP_005383564;XP_013368989;XP_013368990 MODEL 8765133 protein-coding Shroom4 shroom family member 4 ENCODES a protein that exhibits actin filament binding (ortholog); myosin II binding (ortholog); INVOLVED IN actin filament organization (ortholog); brain development (ortholog); cell morphogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog); apical plasma membrane (ortholog) NW_004955543 1810125 2046144 - 102017704 AGCD01071632;AGCD01071633;AGCD01071634;AGCD01071635;AGCD01071636;AGCD01071637;AGCD01071638;AGCD01071639;AGCD01071640;GBDJ01421933;XM_013508168 XP_013363622 MODEL 8807864 protein-coding Nsg1 neuronal vesicle trafficking associated 1 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN amyloid precursor protein metabolic process (ortholog); apoptotic process (ortholog); endosomal transport (ortholog); ASSOCIATED WITH Ellis-Van Creveld syndrome (ortholog); FOUND IN dendrite (ortholog); early endosome (ortholog); early endosome membrane (ortholog) NW_004955514 5273810 5294925 - 102026460 AGCD01067150;AGCD01067151;GBCE01054320;GBDJ01271922;XM_005408832 XP_005408889 MODEL 10331584 ncrna LOC106147252 uncharacterized LOC106147252 NW_004955534 1753860 1762963 + 106147252 AGCD01070508;GBBH01095563;XR_001232048 MODEL 8723744 pseudo LOC102027206 splicing factor 45 pseudogene NW_004955427 2663864 2665065 + 102027206 AGCD01026900 MODEL 9016062 protein-coding Sele selectin E ENCODES a protein that exhibits oligosaccharide binding (ortholog); phospholipase binding (ortholog); sialic acid binding (ortholog); INVOLVED IN actin filament-based process (ortholog); heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); leukocyte cell-cell adhesion (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); allergic contact dermatitis (ortholog); arthritis (ortholog); FOUND IN caveola (ortholog); clathrin-coated pit (ortholog); cortical cytoskeleton (ortholog) NW_004955462 7564437 7575297 + 102011184 AGCD01049308;XM_013521360 XP_013376814 MODEL 8894346 protein-coding Ctsz cathepsin Z ENCODES a protein that exhibits carboxypeptidase activity (ortholog); cysteine-type peptidase activity (ortholog); INVOLVED IN epithelial tube branching involved in lung morphogenesis (ortholog); negative regulation of plasminogen activation (ortholog); proteolysis (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); amyotrophic lateral sclerosis type 8 (ortholog); COVID-19 (ortholog); FOUND IN cell cortex (ortholog); cell surface (ortholog); cytoplasmic vesicle (ortholog) NW_004955445 586901 597753 + 102019446 AGCD01039320;GBDJ01304284;XM_005392214;XM_013518268 XP_005392271;XP_013373722 MODEL 9028914 protein-coding Vstm2b V-set and transmembrane domain containing 2B NW_004955468 8024356 8054229 - 102014438 AGCD01052018;AGCD01052019;GBCQ01015159;XM_005400116;XM_005400117 XP_005400173;XP_005400174 MODEL 8870957 protein-coding Krbox4 KRAB box domain containing 4 ASSOCIATED WITH autistic disorder (ortholog); Kabuki Syndrome 2 (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955516 1506348 1522765 + 102027329 AGCD01067432;GBCB01109387;XM_005408980;XM_005408981;XM_005408983;XM_013506928;XM_013506929;XM_013506930 XP_005409037;XP_005409038;XP_005409040;XP_013362382;XP_013362383;XP_013362384 MODEL 8893510 protein-coding LOC102004305 olfactory receptor 9I1-like NW_004955511 3072937 3073479 + 102004305 AGCD01066440;XM_013506379 XP_013361833 MODEL 9056350 protein-coding Gpt2 glutamic--pyruvic transaminase 2 ENCODES a protein that exhibits L-alanine:2-oxoglutarate aminotransferase activity (ortholog); INVOLVED IN 2-oxoglutarate metabolic process (ortholog); cellular response to insulin stimulus (ortholog); gluconeogenesis (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Chronic Hepatitis C (ortholog); genetic disease (ortholog); FOUND IN extracellular space (ortholog); mitochondrion (ortholog) NW_004955474 8248622 8285449 - 102012189 AGCD01054547;AGCD01054548;GBBH01062376;GBDI01074545;XM_013502769 XP_013358223 MODEL 8793600 protein-coding LOC102025212 zinc finger protein 709-like NW_004955408 2924 43257 + 102025212 AGCD01007905;AGCD01007906;AGCD01007907;GBDF01011173;XM_005375996;XM_013507810 XP_005376053;XP_013363264 MODEL 8726326 protein-coding Bola2b bolA family member 2B INVOLVED IN [2Fe-2S] cluster assembly (ortholog); cell redox homeostasis (ortholog); intracellular iron ion homeostasis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN cytoplasm (ortholog); iron-sulfur cluster assembly complex (ortholog); nucleus (ortholog) NW_004955493 6812208 6812932 + 102020575 AGCD01061141;GBDF01002632;XM_005405183 XP_005405240 MODEL 9051385 protein-coding Ypel2 yippee like 2 ASSOCIATED WITH Joubert syndrome 1 (ortholog) NW_004955451 3644951 3698658 - 102015265 AGCD01043066;AGCD01043067;GBCE01085790;XM_005393987 XP_005394044 MODEL 9005359 pseudo LOC102005009 septin-2-like NW_004955457 11878770 11880262 - 102005009 AGCD01046992 MODEL 8976574 protein-coding LOC102027646 chymotrypsinogen 2-like NW_004955484 2381607 2382524 - 102027646 AGCD01058113;GBDF01240166;XM_005403722 XP_005403779 MODEL 8777212 pseudo LOC102021831 bromodomain-containing protein 7-like NW_004955403 338651 341525 + 102021831 AGCD01001689 MODEL 8862910 ncrna LOC102004307 uncharacterized LOC102004307 NW_004955431 5084453 5109317 - 102004307 AGCD01030014;AGCD01030015;GBDF01050896;XR_001234597;XR_261453;XR_261454;XR_261455 MODEL 8723900 ncrna LOC102003232 uncharacterized LOC102003232 NW_004955416 2924029 2929842 + 102003232 AGCD01016863;GBDF01042362;XR_260349;XR_260350;XR_260351 MODEL 9030029 protein-coding Znf576 zinc finger protein 576 ASSOCIATED WITH ethylmalonic encephalopathy (ortholog); schizophrenia (ortholog) NW_004955555 1335030 1339462 + 102017511 AGCD01073074;GBCQ01096626;XM_005412445;XM_005412446;XM_005412447;XM_005412448;XM_005412449;XM_005412450;XM_005412451;XM_005412452 XP_005412502;XP_005412503;XP_005412504;XP_005412505;XP_005412506;XP_005412507;XP_005412508;XP_005412509 MODEL 8877249 protein-coding Lrrc20 leucine rich repeat containing 20 NW_004955437 20900740 20968294 + 102014287 AGCD01034893;GBDF01118637;XM_005390060;XM_005390062;XM_013517010;XM_013517011;XM_013517012 XP_005390117;XP_005390119;XP_013372464;XP_013372465;XP_013372466 MODEL 8806287 protein-coding Nom1 nucleolar protein with MIF4G domain 1 INVOLVED IN hair follicle maturation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); diffuse large B-cell lymphoma (ortholog); holoprosencephaly 3 (ortholog); FOUND IN nucleolus (ortholog) NW_004955579 27206 42137 + 102028915 AGCD01075532;GBBH01206615;GBDJ01023402;XM_013509670 XP_013365124 MODEL 8865998 ncrna LOC102021832 uncharacterized LOC102021832 NW_004955404 13372937 13378332 - 102021832 AGCD01003484;GBDF01277117;XR_259308 MODEL 8789723 protein-coding LOC102005010 vomeronasal type-2 receptor 116-like NW_004955457 13422847 13441378 - 102005010 AGCD01047044;XM_005397122 XP_005397179 MODEL 39132579 snrna U6 U6 spliceosomal RNA 9013619 pseudo LOC102022751 protein kinase C iota type-like NW_004955561 1157274 1161309 - 102022751 AGCD01073839;AGCD01073840 MODEL 10095780 ncrna LOC106149674 uncharacterized LOC106149674 NW_004955451 15140870 15144113 - 106149674 AGCD01043597;GBDK01156821;XR_001235988 MODEL 39132708 snrna U6 U6 spliceosomal RNA 8790775 pseudo LOC102021837 POU domain, class 5, transcription factor 1-like NW_004955405 15556055 15559935 - 102021837 AGCD01004948 MODEL 8839198 ncrna LOC102020545 uncharacterized LOC102020545 NW_004955412 13502529 13517124 + 102020545 AGCD01012840;GBDF01189310;XR_001232922;XR_001232923;XR_001232924 MODEL 9046023 pseudo LOC102012900 probable G-protein coupled receptor 160 NW_004955440 2492344 2496582 - 102012900 AGCD01036208 MODEL 8833439 protein-coding LOC102027209 olfactory receptor 13A1-like NW_004955507 6342020 6342958 - 102027209 AGCD01065707;XM_005407709 XP_005407766 MODEL 39132710 snrna U6 U6 spliceosomal RNA 8975480 protein-coding Krcc1 lysine rich coiled-coil 1 NW_004955424 812242 825122 + 102013945 AGCD01024209;AGCD01024210;GBCE01101268;XM_005385384;XM_005385385 XP_005385441;XP_005385442 MODEL 9019112 protein-coding Slc20a1 solute carrier family 20 member 1 ENCODES a protein that exhibits high-affinity phosphate:sodium symporter activity (ortholog); sodium:phosphate symporter activity (ortholog); INVOLVED IN biomineral tissue development (ortholog); cell population proliferation (ortholog); phosphate ion transport (ortholog); PARTICIPATES IN phosphate transport pathway; ASSOCIATED WITH Calcification of Aortic Valve (ortholog); endometriosis (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN plasma membrane (ortholog) NW_004955470 1634470 1649234 - 102025232 AGCD01052650;AGCD01052651;GBDF01188180;XM_005400598 XP_005400655 MODEL 8951968 protein-coding Tnnt3 troponin T3, fast skeletal type ENCODES a protein that exhibits actin binding (ortholog); calcium-dependent protein binding (ortholog); tropomyosin binding (ortholog); INVOLVED IN positive regulation of calcium-dependent ATPase activity (ortholog); regulation of ATP-dependent activity (ortholog); regulation of striated muscle contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); Beckwith-Wiedemann syndrome (ortholog); congenital myopathy (ortholog); FOUND IN troponin complex (ortholog) NW_004955422 13702015 13718915 + 102029522 AGCD01022838;GBCB01024288;XM_013514170;XM_013514171;XM_013514172;XM_013514173;XM_013514174;XM_013514175;XM_013514176;XM_013514177;XM_013514178;XM_013514179;XM_013514180;XM_013514181;XM_013514182;XM_013514183 XP_013369624;XP_013369625;XP_013369626;XP_013369627;XP_013369628;XP_013369629;XP_013369630;XP_013369631;XP_013369632;XP_013369633;XP_013369634;XP_013369635;XP_013369636;XP_013369637 MODEL 9027874 pseudo LOC102022755 polycomb protein SUZ12 pseudogene NW_004955568 1527541 1533685 + 102022755 AGCD01074547 MODEL 8922302 pseudo LOC102016241 retinol dehydrogenase 16-like NW_004955458 4555322 4561003 - 102016241 AGCD01047418 MODEL 8780679 protein-coding Tgfb2 transforming growth factor beta 2 ENCODES a protein that exhibits amyloid-beta binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN activation-induced cell death of T cells (ortholog); ascending aorta morphogenesis (ortholog); atrial septum morphogenesis (ortholog); PARTICIPATES IN glypican signaling pathway; Hedgehog signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Aberrant Crypt Foci (ortholog); aortic aneurysm (ortholog); aortic disease (ortholog); FOUND IN axon (ortholog); basement membrane (ortholog); cell surface (ortholog) NW_004955406 174949 249248 - 102006205 AGCD01005613;AGCD01005614;GBCQ01014446;XM_005374702;XM_005374703 XP_005374759;XP_005374760 MODEL 8919178 pseudo LOC102022171 galactoside 2-alpha-L-fucosyltransferase 1-like NW_004955460 11131749 11133358 - 102022171 AGCD01048629 MODEL 8732538 protein-coding Utp20 UTP20 small subunit processome component INVOLVED IN ribosomal small subunit biogenesis (ortholog); rRNA processing (ortholog); FOUND IN nucleolus (ortholog); plasma membrane (ortholog); small-subunit processome (ortholog) NW_004955405 36829984 36910149 + 102024975 AGCD01005428;GBCE01136749;XM_005374546 XP_005374603 MODEL 8727100 protein-coding Ubald2 UBA like domain containing 2 NW_004955506 6018472 6027133 - 102026772 AGCD01065398;GBCB01006590;XM_005407438;XM_005407439;XM_013506126 XP_005407495;XP_005407496;XP_013361580 MODEL 9006993 protein-coding Sppl3 signal peptide peptidase like 3 ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); protein homodimerization activity (ortholog); INVOLVED IN membrane protein ectodomain proteolysis (ortholog); membrane protein proteolysis (ortholog); positive regulation of calcineurin-NFAT signaling cascade (ortholog); ASSOCIATED WITH short chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN cytoplasmic side of endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog); Golgi-associated vesicle membrane (ortholog) NW_004955455 10849627 10905515 + 102006096 AGCD01045965;GBCE01136763;XM_005396491 XP_005396548 MODEL 8949714 protein-coding Esrp1 epithelial splicing regulatory protein 1 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); branching involved in salivary gland morphogenesis (ortholog); epithelial cell proliferation (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 109 (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955417 10813831 10881238 + 102027070 AGCD01018096;AGCD01018097;AGCD01018098;AGCD01018099;AGCD01018100;AGCD01018101;AGCD01018102;AGCD01018103;AGCD01018104;AGCD01018105;GBCE01186588;GBDI01133147;XM_005381812;XM_005381813;XM_005381816;XM_005381817 XP_005381869;XP_005381870;XP_005381873;XP_005381874 MODEL 10089213 protein-coding Znf579 zinc finger protein 579 ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN regulation of transcription by RNA polymerase II (ortholog) NW_004955567 761535 762351 + 106147483 AGCD01074432;GBBH01207834;GBCQ01129075;XM_013509291 XP_013364745 MODEL 8898904 protein-coding Nsg2 neuronal vesicle trafficking associated 2 INVOLVED IN regulation of postsynaptic membrane neurotransmitter receptor levels (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); dendrite (ortholog); early endosome (ortholog) NW_004955408 26664884 26724949 + 102004358 AGCD01008672;GBBH01045170;XM_005376357 XP_005376414 MODEL 10314254 ncrna LOC106147253 uncharacterized LOC106147253 NW_004955534 3898413 3914058 - 106147253 AGCD01070606;AGCD01070607;AGCD01070608;AGCD01070609;GBBH01132357;XR_001232049 MODEL 8770067 protein-coding Shtn1 shootin 1 ENCODES a protein that exhibits actin filament binding (ortholog); cell adhesion molecule binding (ortholog); identical protein binding (ortholog); INVOLVED IN actin filament bundle retrograde transport (ortholog); axonogenesis (ortholog); Cdc42 protein signal transduction (ortholog); ASSOCIATED WITH syndromic microphthalmia 11 (ortholog); FOUND IN axon (ortholog); axonal growth cone (ortholog); cell leading edge (ortholog) NW_004955431 21653415 21734160 - 102027776 AGCD01030496;GBCQ01149394;XM_005387870;XM_013515871 XP_005387927;XP_013371325 MODEL 8891917 protein-coding Utp23 UTP23 small subunit processome component ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); INVOLVED IN endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH colorectal adenocarcinoma (ortholog); Cornelia de Lange syndrome 4 (ortholog); hereditary multiple exostoses (ortholog) NW_004955417 22859914 22867633 + 102029965 AGCD01018423;GBDF01277039;XM_005381897 XP_005381954 MODEL 39132583 snrna U6 U6 spliceosomal RNA 8917899 protein-coding LOC102028885 olfactory receptor 4P4-like NW_004955511 474783 495822 - 102028885 AGCD01066332;XM_005408193 XP_005408250 MODEL 8915981 protein-coding Rp2 RP2 activator of ARL3 GTPase ENCODES a protein that exhibits GTPase activator activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN post-chaperonin tubulin folding pathway (ortholog); post-Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Eye Abnormalities (ortholog); fundus dystrophy (ortholog); FOUND IN centriole (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955516 1160148 1193540 - 102008023 AGCD01067413;GBCC01018717;XM_005409001 XP_005409058 MODEL 8897070 protein-coding Bola3 bolA family member 3 INVOLVED IN adaptive thermogenesis (ortholog); energy homeostasis (ortholog); glucose metabolic process (ortholog); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; ASSOCIATED WITH congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); iron-sulfur cluster assembly complex (ortholog); mitochondrion (ortholog) NW_004955424 11583508 11590626 + 102005818 AGCD01024571;GBCB01006087;GBCE01055358;XM_005385527 XP_005385584 MODEL 8965692 protein-coding LOC102027276 NEDD4-like E3 ubiquitin-protein ligase WWP1 NW_004955462 9961294 9964322 + 102027276 AGCD01049347;XM_013521356 XP_013376810 MODEL 39132584 snrna U6 U6 spliceosomal RNA 8923664 protein-coding Ypel3 yippee like 3 INVOLVED IN positive regulation of cellular senescence (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog) NW_004955493 6885050 6888729 + 102022934 AGCD01061147;GBDI01021747;XM_005405190;XM_005405191 XP_005405247;XP_005405248 MODEL 8973431 protein-coding LOC102020546 uncharacterized LOC102020546 NW_004955465 5665005 5778527 + 102020546 AGCD01050431;AGCD01050432;AGCD01050433;GBDF01117484;XM_005398983 XP_005399040 MODEL 8946749 protein-coding LOC102027648 C-C chemokine receptor type 5 NW_004955420 25629741 25634349 - 102027648 AGCD01021367;GBBH01044145;XM_005383448;XM_013513480;XM_013513481 XP_005383505;XP_013368934;XP_013368935 MODEL 8833038 protein-coding LOC102012901 general transcription factor 3C polypeptide 6-like NW_004955441 6322077 6323436 - 102012901 AGCD01036912;XM_013517515 XP_013372969 MODEL 8928071 protein-coding Mllt6 MLLT6, PHD finger containing ENCODES a protein that exhibits histone binding (ortholog); nucleosome binding (ortholog); INVOLVED IN chromatin organization (ortholog); negative regulation of urine volume (ortholog); positive regulation of sodium ion transport (ortholog) NW_004955451 13793396 13813913 + 102017732 AGCD01043506;GBBH01033241;GBCE01055005;XM_005394276;XM_005394277;XM_013519371 XP_005394333;XP_005394334;XP_013374825 MODEL 9048452 ncrna LOC102004619 uncharacterized LOC102004619 NW_004955497 162494 196973 - 102004619 AGCD01062402;GBCC01014237;XR_264187 MODEL 8865325 protein-coding Lcn12 lipocalin 12 ENCODES a protein that exhibits retinoic acid binding (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog) NW_004955513 4997015 5003691 + 102027218 AGCD01066949;GBDF01113483;XM_005408566;XM_013506642;XM_013506643 XP_005408623;XP_013362096;XP_013362097 MODEL 8899142 protein-coding Boll boule homolog, RNA binding protein ENCODES a protein that exhibits identical protein binding (ortholog); translation activator activity (ortholog); INVOLVED IN meiotic cell cycle (ortholog); positive regulation of translational initiation (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog) NW_004955403 2917694 2963470 + 102012820 AGCD01001740;AGCD01001741;AGCD01001742;GBDF01004912;XM_005373262;XM_013512039;XM_013512041 XP_005373319;XP_013367493;XP_013367495 MODEL 9065878 protein-coding Nono non-POU domain containing octamer binding ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); lncRNA binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); cellular response to angiotensin (ortholog); cellular response to hypoxia (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); aortic dissection (ortholog); atherosclerosis (ortholog); FOUND IN fibrillar center (ortholog); nuclear matrix (ortholog); nucleoplasm (ortholog) NW_004955475 10833514 10853460 + 102006907 AGCD01055119;GBDF01125995;XM_005401665;XM_005401666 XP_005401722;XP_005401723 MODEL 8707225 pseudo LOC102012902 E3 ubiquitin-protein ligase RNF13-like NW_004955550 44557 45787 + 102012902 AGCD01072481 MODEL 8905458 protein-coding Ubap1 ubiquitin associated protein 1 ENCODES a protein that exhibits ubiquitin binding (ortholog); INVOLVED IN ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); ESCRT I complex (ortholog) NW_004955472 1860476 1903478 - 102003336 AGCD01053413;AGCD01053414;AGCD01053415;AGCD01053416;GBCB01020848;XM_005401083;XM_005401084;XM_013522987;XM_013522988;XM_013522989 XP_005401140;XP_005401141;XP_013378441;XP_013378442;XP_013378443 MODEL 8787248 protein-coding Spr sepiapterin reductase ENCODES a protein that exhibits protein homodimerization activity (ortholog); sepiapterin reductase (NADP+) activity (ortholog); INVOLVED IN cell morphogenesis involved in neuron differentiation (ortholog); dopamine metabolic process (ortholog); L-phenylalanine metabolic process (ortholog); PARTICIPATES IN dopa responsive dystonia pathway; Segawa syndrome pathway; ASSOCIATED WITH Alstrom syndrome (ortholog); congenital disorder of glycosylation type IIb (ortholog); COVID-19 (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955424 12711064 12716000 - 102023169 AGCD01024617;GBCQ01002863;GBDJ01180871;XM_005385808 XP_005385865 MODEL 10333412 protein-coding LOC106149675 vegetative cell wall protein gp1-like NW_004955451 14060441 14062845 - 106149675 AGCD01043528;AGCD01043529;GBBH01120906;GBDF01039556;XM_013519424 XP_013374878 MODEL 10362863 protein-coding Gpx1 glutathione peroxidase 1 ENCODES a protein that exhibits glutathione peroxidase activity (ortholog); peroxidase activity (ortholog); phospholipid-hydroperoxide glutathione peroxidase activity (ortholog); INVOLVED IN angiogenesis involved in wound healing (ortholog); apoptotic process (ortholog); arachidonate metabolic process (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acute Coronary Syndrome (ortholog); acute lymphoblastic leukemia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Lewy body (ortholog) NW_004955532 1298336 1298830 - 106147241 AGCD01070176;GBBH01002887;GBCB01000458;XM_013507631 XP_013363085 MODEL 10307030 ncrna LOC106149527 uncharacterized LOC106149527 NW_004955448 2546154 2553247 + 106149527 AGCD01041283;GBDF01141941;XR_001235773 MODEL 8924083 protein-coding LOC102017271 butyrophilin-like protein 1 NW_004955437 739176 750324 + 102017271 AGCD01034158;GBCQ01059693;XM_013516724 XP_013372178 MODEL 10164928 ncrna LOC106149676 uncharacterized LOC106149676 NW_004955451 14041335 14044892 + 106149676 AGCD01043525;GBDJ01377214;XR_001235992 MODEL 8699929 protein-coding Utp25 UTP25 small subunit processome component INVOLVED IN embryonic organ development (ortholog); positive regulation of embryonic development (ortholog); protein catabolic process (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); Hirschsprung's disease (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleolus (ortholog) NW_004955489 2362290 2387162 - 102020572 AGCD01059868;AGCD01059869;GBCE01136335;XM_005404524 XP_005404581 MODEL 8842242 protein-coding Spred1 sprouty related EVH1 domain containing 1 ENCODES a protein that exhibits phosphatase binding (ortholog); protein kinase binding (ortholog); protein serine/threonine kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of angiogenesis (ortholog); negative regulation of cell migration involved in sprouting angiogenesis (ortholog); negative regulation of epithelial to mesenchymal transition (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); Cafe-au-Lait Spots (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955416 5288779 5376861 + 102007890 AGCD01016907;AGCD01016908;GBDI01256639;XM_005381197 XP_005381254 MODEL 8868191 ncrna LOC102022173 uncharacterized LOC102022173 NW_004955462 9257426 9259568 - 102022173 AGCD01049335;GBDK01198807;XR_001236611 MODEL 39132586 snrna U6 U6 spliceosomal RNA 8918437 protein-coding Dip2b disco interacting protein 2 homolog B ENCODES a protein that exhibits alpha-tubulin binding (ortholog); INVOLVED IN negative regulation of axon extension (ortholog); positive regulation of peptidyl-lysine acetylation (ortholog); ASSOCIATED WITH absence epilepsy (ortholog); autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder type FRA12A (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955547 1012320 1240749 + 102017164 AGCD01072201;AGCD01072202;AGCD01072203;AGCD01072204;GBBH01076687;GBDF01215294;XM_013508452;XM_013508453;XM_013508454 XP_013363906;XP_013363907;XP_013363908 MODEL 8708144 protein-coding Tgfb3 transforming growth factor beta 3 ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); transforming growth factor beta binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); cell population proliferation (ortholog); cell-cell junction organization (ortholog); PARTICIPATES IN glypican signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); arrhythmogenic right ventricular dysplasia 1 (ortholog); Brugada syndrome (ortholog); FOUND IN cell surface (ortholog); collagen-containing extracellular matrix (ortholog); extracellular matrix (ortholog) NW_004955438 33129 55180 - 102026475 AGCD01034940;GBCE01098971;XM_005390146 XP_005390203 MODEL 9026283 protein-coding Ift52 intraflagellar transport 52 INVOLVED IN cilium assembly (ortholog); determination of left/right symmetry (ortholog); dorsal/ventral pattern formation (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); asphyxiating thoracic dystrophy (ortholog); focal epilepsy (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955445 13542726 13580204 - 102025631 AGCD01039791;AGCD01039792;AGCD01039793;AGCD01039794;GBCE01054533;XM_005392497 XP_005392554 MODEL 8935304 protein-coding Mln motilin ENCODES a protein that exhibits motilin receptor binding (ortholog); ASSOCIATED WITH drug allergy (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog) NW_004955437 2188719 2193102 - 102012239 AGCD01034262;GBCE01123765;XM_005415242 XP_005415299 MODEL 8727968 protein-coding LOC102027650 NACHT, LRR and PYD domains-containing protein 3-like NW_004955490 7930373 7968806 - 102027650 AGCD01060269;AGCD01060270;GBDF01123910;XM_013504511;XM_013504512;XM_013504513 XP_013359965;XP_013359966;XP_013359967 MODEL 10284691 ncrna LOC106148719 uncharacterized LOC106148719 NW_004955403 1467959 1471447 + 106148719 AGCD01001723;GBDJ01415142;XR_001234375;XR_001234378 MODEL 8749418 pseudo LOC102026198 nuclear receptor coactivator 4 pseudogene NW_004955411 35912922 35918627 - 102026198 AGCD01012458 MODEL 9017728 protein-coding Vstm2l V-set and transmembrane domain containing 2 like INVOLVED IN negative regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog) NW_004955445 18756458 18786310 - 102016646 AGCD01039906;GBDF01115198;XM_005392552 XP_005392609 MODEL 10211021 ncrna LOC106147254 uncharacterized LOC106147254 NW_004955408 17028248 17072336 + 106147254 AGCD01008453;AGCD01008454;AGCD01008455;GBDF01017039;XR_001232050 MODEL 8806949 protein-coding LOC102021842 5-hydroxyisourate hydrolase-like NW_004955454 3525747 3529939 - 102021842 AGCD01045087;GBCQ01176230;XM_005395943;XM_013520070 XP_005396000;XP_013375524 MODEL 8910650 protein-coding Nop10 NOP10 ribonucleoprotein ENCODES a protein that exhibits box H/ACA snoRNA binding (ortholog); RNA binding (ortholog); telomerase RNA binding (ortholog); INVOLVED IN snoRNA guided rRNA pseudouridine synthesis (ortholog); telomerase RNA localization to Cajal body (ortholog); telomere maintenance via telomerase (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH agenesis of the corpus callosum with peripheral neuropathy (ortholog); Autosomal Recessive Dyskeratosis Congenita (ortholog); autosomal recessive dyskeratosis congenita 1 (ortholog); FOUND IN box H/ACA snoRNP complex (ortholog); box H/ACA telomerase RNP complex (ortholog); nuclear body (ortholog) NW_004955416 272127 273068 + 102018723 AGCD01016791;GBDF01007977;XM_005381152 XP_005381209 MODEL 10286703 ncrna LOC106147255 uncharacterized LOC106147255 NW_004955408 16014582 16031493 - 106147255 AGCD01008432;GBDF01014167;XR_001232054 MODEL 9016001 pseudo LOC102004309 ESF1 homolog NW_004955432 19133089 19170480 - 102004309 AGCD01031169 MODEL 8963858 protein-coding Pptc7 protein phosphatase targeting COQ7 ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN negative regulation of mitophagy (ortholog); positive regulation of ubiquinone biosynthetic process (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955482 7445218 7484939 - 102004711 AGCD01057468;AGCD01057469;GBCB01043299;GBCE01016802;XM_013503656 XP_013359110 MODEL 9051664 protein-coding Gpx2 glutathione peroxidase 2 ENCODES a protein that exhibits glutathione peroxidase activity (ortholog); phospholipid-hydroperoxide glutathione peroxidase activity (ortholog); INVOLVED IN biological process involved in interaction with symbiont (ortholog); negative regulation of inflammatory response to antigenic stimulus (ortholog); response to salicylic acid (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Breast Neoplasms (ortholog); Carbon Tetrachloride Poisoning (ortholog); FOUND IN cytosol (ortholog); intercellular bridge (ortholog); mitotic spindle (ortholog) NW_004955466 4983532 4987780 + 102025776 AGCD01050864;GBCB01103114;XM_005399115 XP_005399172 MODEL 10068121 protein-coding LOC106150193 predicted GPI-anchored protein 58 NW_004955467 895864 897471 + 106150193 AGCD01051242;GBBH01151179;GBDF01252515;XM_013522194 XP_013377648 MODEL 8888458 protein-coding Tst thiosulfate sulfurtransferase ENCODES a protein that exhibits 5S rRNA binding (ortholog); INVOLVED IN epithelial cell differentiation (ortholog); rRNA import into mitochondrion (ortholog); rRNA transport (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); autosomal recessive chronic granulomatous disease 3 (ortholog); colitis (ortholog); FOUND IN mitochondrion (ortholog) NW_004955413 23528468 23534890 - 102025559 AGCD01014332;GBCB01007472;XM_005379180 XP_005379237 MODEL 8736575 ncrna LOC102020547 uncharacterized LOC102020547 NW_004955466 9565453 9567673 + 102020547 AGCD01051047;GBCC01009470;XR_263302 MODEL 8864638 pseudo LOC102004312 BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 pseudogene NW_004955434 9625813 9626382 - 102004312 AGCD01032306 MODEL 8962976 protein-coding Utp3 UTP3 small subunit processome component INVOLVED IN brain development (ortholog); ribosomal small subunit biogenesis (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog); small-subunit processome (ortholog) NW_004955447 2290916 2292419 - 102024861 AGCD01040538;GBBH01228220;XM_005392784 XP_005392841 MODEL 8874336 ncrna LOC102003471 uncharacterized LOC102003471 NW_004955428 13113557 13178517 - 102003471 AGCD01027942;AGCD01027943;AGCD01027944;GBDI01311971;XR_001234449;XR_001234450;XR_261299 MODEL 8755049 protein-coding Lcn6 lipocalin 6 INVOLVED IN acrosome reaction (ortholog); calcium ion homeostasis (ortholog); cell maturation (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog) NW_004955513 4860420 4863716 - 102022729 AGCD01066943;GBBH01173461;XM_013506588 XP_013362042 MODEL 8916892 protein-coding Nsl1 NSL1 component of MIS12 kinetochore complex ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN kinetochore (ortholog); MIS12/MIND type complex (ortholog); nuclear speck (ortholog) NW_004955406 4764439 4798499 + 102020080 AGCD01005704;AGCD01005705;AGCD01005706;GBCE01065089;XM_005374740 XP_005374797 MODEL 8885207 protein-coding Ift56 intraflagellar transport 56 ENCODES a protein that exhibits intraciliary transport particle B binding (ortholog); INVOLVED IN axoneme assembly (ortholog); cilium assembly (ortholog); intraciliary transport (ortholog); ASSOCIATED WITH BILIARY, RENAL, NEUROLOGIC, AND SKELETAL SYNDROME (ortholog); Caroli disease (ortholog); hydrocephalus (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955494 3861679 3905499 - 102028648 AGCD01061488;AGCD01061489;AGCD01061490;GBDF01120106;XM_005405446;XM_005405447 XP_005405503;XP_005405504 MODEL 9016419 protein-coding LOC102028891 uncharacterized LOC102028891 NW_004955524 1069165 1071503 + 102028891 AGCD01068734;GBDF01266253;XM_005409504 XP_005409561 MODEL 39132711 snrna U6 U6 spliceosomal RNA 8933177 protein-coding Ubap1l ubiquitin associated protein 1 like ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); fundus dystrophy (ortholog) NW_004955450 10312032 10332917 + 102008366 AGCD01042611;AGCD01042612;AGCD01042613;GBDJ01348814;GBDK01255230;XM_013518971 XP_013374425 MODEL 10074639 pseudo LOC106148720 60S ribosomal protein L21 pseudogene NW_004955427 13906742 13907261 + 106148720 AGCD01027262 MODEL 39133570 snrna U2 U2 spliceosomal RNA 8948743 protein-coding Rpa1 replication protein A1 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin-protein adaptor activity (ortholog); damaged DNA binding (ortholog); INVOLVED IN base-excision repair (ortholog); chromosome organization (ortholog); DNA damage response (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH Chloracne (ortholog); Pulmonary Fibrosis and/or Bone Marrow Failure Syndrome, Telomere-Related, 6 (ortholog); FOUND IN condensed chromosome (ortholog); condensed nuclear chromosome (ortholog); DNA replication factor A complex (ortholog) NW_004955481 1304035 1361806 - 102014137 AGCD01056830;GBCB01021026;XM_005402602 XP_005402659 MODEL 8856462 pseudo LOC102022758 40S ribosomal protein SA pseudogene NW_004955570 1323409 1325769 + 102022758 AGCD01074809 MODEL 8846915 pseudo LOC102027277 dual specificity protein kinase TTK pseudogene NW_004955462 4417058 4418351 - 102027277 AGCD01049225 MODEL 10102484 ncrna LOC106149677 uncharacterized LOC106149677 NW_004955451 14060017 14061690 + 106149677 AGCD01043528;GBDJ01326845;XR_001235993 MODEL 8798257 protein-coding Nfe2l2 NFE2 like bZIP transcription factor 2 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN aflatoxin catabolic process (ortholog); cell redox homeostasis (ortholog); cellular response to angiotensin (ortholog); PARTICIPATES IN nuclear factor, erythroid 2 like 2 signaling pathway; oxidative stress response pathway; ASSOCIATED WITH Acidoses (ortholog); acute kidney failure (ortholog); Acute Lung Injury (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); ciliary basal body (ortholog) NW_004955403 19510122 19536428 + 102007075 AGCD01002133;GBBH01065128;XM_005373407;XM_013512710;XM_013512713 XP_005373464;XP_013368164;XP_013368167 MODEL 8914386 pseudo LOC102022177 serpin B9-like NW_004955465 10417040 10426823 + 102022177 AGCD01050509;AGCD01050510 MODEL 10136037 ncrna LOC106150194 uncharacterized LOC106150194 NW_004955467 8843074 8845183 - 106150194 AGCD01051475;XR_001236865;XR_001236866 MODEL 39133572 snrna U2 U2 spliceosomal RNA 8872317 protein-coding Cttn cortactin ENCODES a protein that exhibits Arp2/3 complex binding (ortholog); profilin binding (ortholog); proline-rich region binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cell motility (ortholog); dendritic spine maintenance (ortholog); PARTICIPATES IN E-cadherin signaling pathway; fibroblast growth factor signaling pathway; N-cadherin signaling pathway; ASSOCIATED WITH intellectual disability (ortholog); juvenile rheumatoid arthritis (ortholog); Leukoplakia (ortholog); FOUND IN actin filament (ortholog); cell cortex (ortholog); cell junction (ortholog) NW_004955422 15838036 15874067 - 102019074 AGCD01022882;AGCD01022883;GBCQ01005954;XM_005384232;XM_005384233;XM_013514240 XP_005384289;XP_005384290;XP_013369694 MODEL 8843356 protein-coding Ppwd1 peptidylprolyl isomerase domain and WD repeat containing 1 ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear body (ortholog) NW_004955446 3511152 3531584 - 102020298 AGCD01040022;GBDJ01017167;XM_005392628;XM_013518411;XM_013518412 XP_005392685;XP_013373865;XP_013373866 MODEL 8798562 protein-coding Dip2c disco interacting protein 2 homolog C ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); lung small cell carcinoma (ortholog) NW_004955492 543026 764697 + 102012866 AGCD01060642;AGCD01060643;AGCD01060644;GBDF01249271;XM_013504713;XM_013504714;XM_013504715;XM_013504716 XP_013360167;XP_013360168;XP_013360169;XP_013360170 MODEL 8894372 protein-coding LOC102004314 vomeronasal type-2 receptor 116-like NW_004955524 1994507 2020685 + 102004314 AGCD01068790;AGCD01068791;AGCD01068792;XM_013507192 XP_013362646 MODEL 9049702 protein-coding LOC102012903 CMRF35-like molecule 4 NW_004955553 1487167 1496439 - 102012903 AGCD01072886;GBCE01119428;XM_005412249;XM_005412250 XP_005412306;XP_005412307 MODEL 9010088 pseudo LOC102027653 probable ATP-dependent RNA helicase DDX41 pseudogene NW_004955422 48669 50653 - 102027653 AGCD01022389;AGCD01022390;XM_005384924 MODEL 8787419 pseudo LOC102026201 keratin, type II cytoskeletal 8-like NW_004955467 6858657 6860126 + 102026201 AGCD01051425 MODEL 8866936 protein-coding Utp4 UTP4 small subunit processome component INVOLVED IN maturation of SSU-rRNA (ortholog); regulation of DNA-templated transcription (ortholog); ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); cholestasis (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN chromosome (ortholog); fibrillar center (ortholog); nucleolus (ortholog) NW_004955484 7501784 7531757 - 102003346 AGCD01058336;GBCC01032813;XM_005403564;XM_005403565 XP_005403621;XP_005403622 MODEL 8751981 protein-coding Kremen1 kringle containing transmembrane protein 1 INVOLVED IN apoptotic process (ortholog); limb development (ortholog); negative regulation of axon regeneration (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Cancer, Familial (ortholog); ectodermal dysplasia 13 (ortholog); genetic disease (ortholog); FOUND IN neuronal cell body (ortholog) NW_004955455 3308740 3368690 + 102025320 AGCD01045621;AGCD01045622;GBBH01091049;XM_005396174;XM_005396175 XP_005396231;XP_005396232 MODEL 8933647 ncrna LOC102016243 uncharacterized LOC102016243 NW_004955460 2040343 2061691 - 102016243 AGCD01048386;XR_263025 MODEL 8724092 protein-coding Tbc1d10a TBC1 domain family member 10A ENCODES a protein that exhibits GTPase activator activity (ortholog); PDZ domain binding (ortholog); INVOLVED IN positive regulation of proteolysis (ortholog); regulation of cilium assembly (ortholog); retrograde transport, endosome to Golgi (ortholog); FOUND IN plasma membrane (ortholog) NW_004955455 4537634 4570949 - 102018564 AGCD01045679;AGCD01045680;GBDF01052787;XM_005396252 XP_005396309 MODEL 39131381 protein-coding SELE selectin E 8805579 protein-coding Cttnbp2 cortactin binding protein 2 ENCODES a protein that exhibits SH3 domain binding (ortholog); INVOLVED IN regulation of modification of postsynaptic actin cytoskeleton (ortholog); regulation of synapse organization (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); cystic fibrosis (ortholog); Myocardial Ischemia (ortholog); FOUND IN dendritic spine (ortholog); FAR/SIN/STRIPAK complex (ortholog); glutamatergic synapse (ortholog) NW_004955432 23364193 23527300 - 102005956 AGCD01031283;AGCD01031284;AGCD01031285;AGCD01031286;GBDK01323978;XM_005388158 XP_005388215 MODEL 8988488 protein-coding Ypel4 yippee like 4 INVOLVED IN negative regulation of erythrocyte clearance (ortholog); negative regulation of erythrocyte differentiation (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH COVID-19 (ortholog); intellectual disability (ortholog) NW_004955511 2580518 2588753 - 102019419 AGCD01066418;GBCE01188029;XM_005408001;XM_005408002;XM_013506487;XM_013506488;XM_013506489 XP_005408058;XP_005408059;XP_013361941;XP_013361942;XP_013361943 MODEL 10182867 ncrna LOC106148721 uncharacterized LOC106148721 NW_004955427 13938561 13951715 - 106148721 AGCD01027262;GBBH01122498;XR_001234376 MODEL 8786970 protein-coding Lrrc23 leucine rich repeat containing 23 INVOLVED IN flagellated sperm motility (ortholog); radial spoke assembly (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); Klippel-Feil syndrome 3 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); sperm flagellum (ortholog) NW_004955413 4491443 4498283 + 102007100 AGCD01013619;GBDF01003541;XM_005378841;XM_005378842;XM_013511339;XM_013511341 XP_005378898;XP_005378899;XP_013366793;XP_013366795 MODEL 8712262 protein-coding LOC102023128 cytochrome c oxidase assembly protein COX16 homolog, mitochondrial INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); ASSOCIATED WITH mitochondrial complex IV deficiency nuclear type 22 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955466 130341 142969 + 102023128 AGCD01050650;AGCD01050651;GBCQ01038746;XM_005399020 XP_005399077 MODEL 8883903 protein-coding Znf580 zinc finger protein 580 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); positive regulation of endothelial cell migration (ortholog); positive regulation of endothelial cell proliferation (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955567 706061 707995 - 102012256 AGCD01074426;GBDF01306353;XM_005413287 XP_005413344 MODEL 8746106 protein-coding Ubap2 ubiquitin associated protein 2 ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); distal arthrogryposis type 1A (ortholog); frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ortholog) NW_004955472 2044397 2100904 + 102006900 AGCD01053432;AGCD01053433;AGCD01053434;AGCD01053435;GBCQ01067904;GBDF01007408;XM_013523012 XP_013378466 MODEL 10333419 ncrna LOC106149678 uncharacterized LOC106149678 NW_004955451 13608289 13610579 - 106149678 AGCD01043491;GBDF01040212;XR_001235995;XR_001235996 MODEL 8956041 protein-coding LOC102022759 chondroitin sulfate proteoglycan 4-like NW_004955446 12743297 12808985 + 102022759 AGCD01040243;GBCB01075890;XM_005392714 XP_005392771 MODEL 9041653 protein-coding Si sucrase-isomaltase ENCODES a protein that exhibits beta-fructofuranosidase activity (ortholog); oligo-1,6-glucosidase activity (ortholog); INVOLVED IN carbohydrate utilization (ortholog); intestinal epithelial cell maturation (ortholog); response to cortisone (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; glycogen storage disease type III pathway; glycogen storage disease type IV pathway; ASSOCIATED WITH colitis (ortholog); congenital sucrase-isomaltase deficiency (ortholog); exocrine pancreatic insufficiency (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog) NW_004955448 14686315 14777298 - 102009668 AGCD01041642;AGCD01041643;AGCD01041644;AGCD01041645;GBCQ01066789;XM_005393136 XP_005393193 MODEL 8894729 protein-coding Znf581 zinc finger protein 581 NW_004955567 703844 705830 - 102012590 AGCD01074425;AGCD01074426;GBDI01024632;XM_005413288 XP_005413345 MODEL 8962356 ncrna LOC102027210 uncharacterized LOC102027210 NW_004955429 15716712 15719141 - 102027210 AGCD01028817;GBDF01277872;XR_261339 MODEL 8953172 protein-coding Bop1 BOP1 ribosomal biogenesis factor ENCODES a protein that exhibits ribonucleoprotein complex binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); maturation of 5.8S rRNA (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); Disease Progression (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955454 2882694 2907177 - 102026942 AGCD01045038;AGCD01045039;GBBH01143564;XM_005395860 XP_005395917 MODEL 39133573 snrna U2 U2 spliceosomal RNA 8709530 protein-coding Tnp1 transition protein 1 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); flagellated sperm motility (ortholog); heterochromatin formation (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN male germ cell nucleus (ortholog); nucleosome (ortholog); nucleus (ortholog) NW_004955453 16387897 16388513 + 102021623 AGCD01044902;GBDF01007631;XM_005395680 XP_005395737 MODEL 8937175 ncrna LOC102022761 uncharacterized LOC102022761 NW_004955583 919179 927348 + 102022761 AGCD01075874;GBDJ01423788;XR_265101 MODEL 8768883 protein-coding Vstm4 V-set and transmembrane domain containing 4 INVOLVED IN endothelial cell migration (ortholog); endothelial cell proliferation (ortholog); retina blood vessel maintenance (ortholog); ASSOCIATED WITH Cockayne syndrome B (ortholog); megacolon (ortholog); schizophrenia (ortholog) NW_004955556 1085826 1160916 + 102004428 AGCD01073185;AGCD01073186;GBCB01063759;XM_005412575;XM_013508815;XM_013508816;XM_013508817 XP_005412632;XP_013364269;XP_013364270;XP_013364271 MODEL 8727318 protein-coding Ppy pancreatic polypeptide ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog) NW_004955451 17155681 17156829 - 102005767 AGCD01043724;XM_013519200 XP_013374654 MODEL 8772939 pseudo LOC102027660 zinc finger CCCH domain-containing protein 14-like NW_004955425 25156218 25158423 - 102027660 AGCD01025910 MODEL 8838835 protein-coding Scamp3 secretory carrier membrane protein 3 ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN response to retinoic acid (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN Golgi membrane (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955545 1710755 1715739 - 102004324 AGCD01071869;GBCE01055768;XM_005411595 XP_005411652 MODEL 8734323 protein-coding LOC102012904 heterogeneous nuclear ribonucleoproteins A2/B1-like NW_004955442 15309996 15311329 - 102012904 AGCD01037865;GBDF01258035;XM_005391493 XP_005391550 MODEL 8723011 pseudo LOC102022763 E3 ubiquitin-protein ligase RING2 pseudogene NW_004955449 3598267 3600715 - 102022763 AGCD01041856 MODEL 8955571 protein-coding Bora BORA aurora kinase A activator ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN regulation of mitotic nuclear division (ortholog); regulation of mitotic spindle organization (ortholog); regulation of protein localization (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); FOUND IN meiotic spindle (ortholog) NW_004955404 33923496 33946113 - 102027935 AGCD01004084;GBBH01137438;XM_005374192;XM_005374193 XP_005374249;XP_005374250 MODEL 8713550 protein-coding Gpx3 glutathione peroxidase 3 ENCODES a protein that exhibits glutathione peroxidase activity (ortholog); identical protein binding (ortholog); mercury ion binding (ortholog); INVOLVED IN hydrogen peroxide catabolic process (ortholog); response to 2,3,7,8-tetrachlorodibenzodioxine (ortholog); response to corticosterone (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acute Coronary Syndrome (ortholog); acute kidney failure (ortholog); FOUND IN extracellular space (ortholog) NW_004955408 2622162 2629088 - 102019030 AGCD01008015;GBCQ01000317;XM_005376065 XP_005376122 MODEL 8967604 protein-coding Vstm5 V-set and transmembrane domain containing 5 INVOLVED IN filopodium assembly (ortholog); positive regulation of excitatory synapse assembly (ortholog); protein homooligomerization (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); membrane (ortholog) NW_004955414 727714 751368 + 102019589 AGCD01014746;GBDJ01037631;XM_005379684 XP_005379741 MODEL 8763989 protein-coding Utp6 UTP6 small subunit processome component INVOLVED IN ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH cerebral palsy (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); small-subunit processome (ortholog) NW_004955481 6804266 6835729 - 102021345 AGCD01057037;AGCD01057038;GBCC01005417;XM_005402806;XM_013503521 XP_005402863;XP_013358975 MODEL 10379633 ncrna LOC106148722 uncharacterized LOC106148722 NW_004955427 24283960 24287605 + 106148722 AGCD01027507;GBBH01048035;XR_001234379 MODEL 8877473 pseudo LOC102022180 uncharacterized protein C11orf57 pseudogene NW_004955466 12265025 12265773 + 102022180 AGCD01051118 MODEL 8896063 protein-coding LOC102024791 uncharacterized LOC102024791 NW_004955415 29381875 29412130 - 102024791 AGCD01016651;GBCE01045493;XM_005380956;XM_013512314;XM_013512315;XM_013512316;XR_001233233 XP_005381013;XP_013367768;XP_013367769;XP_013367770 MODEL 8867840 protein-coding Scamp5 secretory carrier membrane protein 5 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN negative regulation of endocytosis (ortholog); positive regulation of calcium ion-dependent exocytosis (ortholog); positive regulation of cytokine production (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive intellectual developmental disorder 41 (ortholog); basal cell carcinoma (ortholog); FOUND IN Golgi membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955450 2986522 3009655 - 102004766 AGCD01042416;AGCD01042417;AGCD01042418;GBDK01377853;XM_005393526 XP_005393583 MODEL 8923117 ncrna LOC102022766 uncharacterized LOC102022766 NW_004955402 62341515 62343840 - 102022766 AGCD01001641;GBDF01249798;XR_259123 MODEL 10116928 protein-coding LOC106150195 transcription factor GATA-6-like NW_004955402 10646324 10648093 + 106150195 AGCD01000283;GBDJ01386767;XM_013522276 XP_013377730 MODEL 10301226 ncrna LOC106149679 uncharacterized LOC106149679 NW_004955451 17625204 17626908 + 106149679 AGCD01043764;GBDJ01262452;XR_001235997 MODEL 8973790 protein-coding Ubap2l ubiquitin associated protein 2 like INVOLVED IN binding of sperm to zona pellucida (ortholog); hematopoietic stem cell homeostasis (ortholog); positive regulation of stress granule assembly (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); Developmental Disabilities (ortholog); dyschromatosis symmetrica hereditaria (ortholog); FOUND IN PcG protein complex (ortholog) NW_004955545 767265 815632 + 102030571 AGCD01071817;GBDF01143975;XM_005411482;XM_005411483;XM_005411484;XM_005411485;XM_013508248;XM_013508249;XM_013508250;XM_013508251;XM_013508252;XM_013508253;XM_013508254;XM_013508255;XM_013508256;XM_013508257;XM_013508258;XM_013508259;XM_013508260;XM_013508261;XM_013508262;XM_013508263;XM_013508264;XM_013508265 XP_005411539;XP_005411540;XP_005411541;XP_005411542;XP_013363702;XP_013363703;XP_013363704;XP_013363705;XP_013363706;XP_013363707;XP_013363708;XP_013363709;XP_013363710;XP_013363711;XP_013363712;XP_013363713;XP_013363714;XP_013363715;XP_013363716;XP_013363717;XP_013363718;XP_013363719 MODEL 8815243 protein-coding Znf582 zinc finger protein 582 NW_004955567 332343 351432 - 102018345 AGCD01074401;AGCD01074402;GBCB01042641;XM_005413304 XP_005413361 MODEL 8731931 protein-coding LOC102027212 olfactory receptor 5W2-like NW_004955511 760026 760958 - 102027212 AGCD01066342;XM_005407947 XP_005408004 MODEL 8735492 protein-coding Utrn utrophin ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); integrin binding (ortholog); INVOLVED IN neuromuscular junction development (ortholog); positive regulation of cell-matrix adhesion (ortholog); response to denervation involved in regulation of muscle adaptation (ortholog); ASSOCIATED WITH Duchenne muscular dystrophy (ortholog); ovarian cancer (ortholog); FOUND IN ciliary basal body (ortholog); cilium (ortholog); contractile ring (ortholog) NW_004955436 15730416 16237379 - 102029994 AGCD01033901;AGCD01033902;AGCD01033903;AGCD01033904;AGCD01033905;AGCD01033906;AGCD01033907;AGCD01033908;AGCD01033909;GBDF01251898;XM_005389231;XM_005389232;XM_005389233;XM_005389234;XM_005389237 XP_005389288;XP_005389289;XP_005389290;XP_005389291;XP_005389294 MODEL 8729650 protein-coding Tgfbi transforming growth factor beta induced ENCODES a protein that exhibits collagen binding (ortholog); extracellular matrix binding (ortholog); identical protein binding (ortholog); INVOLVED IN angiogenesis (ortholog); cell adhesion (ortholog); chondrocyte differentiation (ortholog); ASSOCIATED WITH corneal dystrophy (ortholog); Diabetic Nephropathies (ortholog); epithelial basement membrane dystrophy (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular space (ortholog) NW_004955408 31093450 31124715 + 102014537 AGCD01008821;GBBH01034064;XM_005376495 XP_005376552 MODEL 8712207 pseudo LOC102020548 putative monooxygenase p33MONOX pseudogene NW_004955466 8052265 8053164 + 102020548 AGCD01050977 MODEL 8786462 protein-coding LOC102016246 cytochrome c oxidase assembly factor 7 ENCODES a protein that exhibits protein-disulfide reductase activity (ortholog); INVOLVED IN respiratory chain complex IV assembly (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); genetic disease (ortholog); spinocerebellar ataxia with axonal neuropathy type 3 (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955464 6472158 6490618 + 102016246 AGCD01050028;AGCD01050029;GBDF01221395;XM_005398571 XP_005398628 MODEL 8839537 protein-coding Selenbp1 selenium binding protein 1 ENCODES a protein that exhibits methanethiol oxidase activity (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Colorectal Neoplasms (ortholog); FOUND IN fibrillar center (ortholog); nucleolus (ortholog) NW_004955588 703928 713941 - 102003505 AGCD01076118;GBDK01013351;XM_005414518;XM_013509926 XP_005414575;XP_013365380 MODEL 8820864 protein-coding LOC102003475 olfactory receptor 5D18-like NW_004955511 551616 552566 - 102003475 AGCD01066333;XM_005408199 XP_005408256 MODEL 9046730 protein-coding LOC102012905 tektin-4-like NW_004955442 16149329 16154459 + 102012905 AGCD01037891;AGCD01037892;GBDF01003534;XM_005391594 XP_005391651 MODEL 9011345 protein-coding Mlnr motilin receptor ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); hormone binding (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955431 2711418 2719062 + 102020365 AGCD01029938;GBBH01212207;XM_005387575;XR_261442 XP_005387632 MODEL 8907773 protein-coding Znf583 zinc finger protein 583 NW_004955567 359748 376808 + 102017824 AGCD01074402;GBBH01147956;XM_005413302;XM_005413303;XM_013509261 XP_005413359;XP_005413360;XP_013364715 MODEL 8823134 protein-coding Uts2 urotensin 2 INVOLVED IN blood vessel diameter maintenance (ortholog); negative regulation of blood pressure (ortholog); negative regulation of glomerular filtration (ortholog); ASSOCIATED WITH asthma (ortholog); Bradycardia (ortholog); cardiomyopathy (ortholog); FOUND IN extracellular space (ortholog) NW_004955486 5052045 5056610 + 102004488 AGCD01059074;XM_005404067 XP_005404124 MODEL 8981608 protein-coding Vsx1 visual system homeobox 1 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN neuron development (ortholog); neuron maturation (ortholog); retinal bipolar neuron differentiation (ortholog); ASSOCIATED WITH Auditory Perceptual Disorders (ortholog); corneal dystrophy (ortholog); Craniofacial Abnormalities (ortholog); FOUND IN nucleus (ortholog) NW_004955415 31174155 31180718 - 102009940 AGCD01016670;GBDI01189289;XM_005380985 XP_005381042 MODEL 8887677 ncrna LOC102005017 uncharacterized LOC102005017 NW_004955466 5718966 5721167 + 102005017 AGCD01050888;GBDF01281132;XR_001236796 MODEL 8922382 pseudo LOC102024792 MOB-like protein phocein pseudogene NW_004955475 5299692 5302058 - 102024792 AGCD01054911 MODEL 8707070 protein-coding Nop14 NOP14 nucleolar protein ENCODES a protein that exhibits enzyme binding (ortholog); ASSOCIATED WITH cherubism (ortholog); Ellis-Van Creveld syndrome (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955514 1817645 1837011 - 102030559 AGCD01067065;GBCQ01068048;XM_005408757 XP_005408814 MODEL 8879121 pseudo LOC102026205 T-cell surface glycoprotein CD1c3-like NW_004955468 10306664 10310113 - 102026205 AGCD01052075 MODEL 8829884 protein-coding Esrp2 epithelial splicing regulatory protein 2 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); branching involved in salivary gland morphogenesis (ortholog); epithelial cell proliferation (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); cleft lip (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955484 8426453 8433902 + 102012434 AGCD01058383;GBCQ01177080;XM_005403591 XP_005403648 MODEL 8832072 protein-coding Scand1 SCAN domain containing 1 INVOLVED IN positive regulation of DNA-templated transcription (ortholog); FOUND IN nucleus (ortholog) NW_004955422 25561146 25562042 + 102003149 AGCD01023253;GBDK01004111;XM_005384762;XM_005384763 XP_005384819;XP_005384820 MODEL 8720677 pseudo LOC102022767 cytochrome P450 2U1-like NW_004955402 17306760 17461686 + 102022767 AGCD01000502;AGCD01000503;AGCD01000504;AGCD01000505;AGCD01000506 MODEL 8948449 protein-coding Uts2b urotensin 2B ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); INVOLVED IN regulation of blood pressure (ortholog); ASSOCIATED WITH schizophrenia (ortholog) NW_004955420 16947003 17016229 + 102026432 AGCD01021010;AGCD01021011;AGCD01021012;GBDF01120695;XM_013513490;XR_001233734;XR_001233735;XR_001233736;XR_001233737;XR_001233738;XR_001233739;XR_001233740;XR_001233741 XP_013368944 MODEL 8994483 protein-coding Tstd1 thiosulfate sulfurtransferase like domain containing 1 ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); cytosol (ortholog) NW_004955468 12813116 12814651 - 102024208 AGCD01052189;GBDF01162197;XM_005400229;XM_013522524;XM_013522525 XP_005400286;XP_013377978;XP_013377979 MODEL 8751965 protein-coding LOC102024798 protein FAM170A-like NW_004955481 10374223 10424005 + 102024798 AGCD01057145;AGCD01057146;AGCD01057147;AGCD01057148;GBDF01089303;XM_005402934;XM_013503341;XM_013503342;XM_013503343;XM_013503344;XR_001230912;XR_001230913 XP_005402991;XP_013358795;XP_013358796;XP_013358797;XP_013358798 MODEL 8941196 pseudo LOC102026207 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 pseudogene NW_004955469 2149149 2149963 + 102026207 AGCD01052270 MODEL 8703352 pseudo LOC102023819 melanoma-associated antigen 10-like NW_004955498 4467730 4468548 - 102023819 AGCD01063000 MODEL 8948477 protein-coding Cttnbp2nl CTTNBP2 N-terminal like ENCODES a protein that exhibits protein phosphatase 2A binding (ortholog); INVOLVED IN negative regulation of transmembrane transport (ortholog); negative regulation of transporter activity (ortholog); protein dephosphorylation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); hereditary spastic paraplegia 47 (ortholog); FOUND IN actin cytoskeleton (ortholog); FAR/SIN/STRIPAK complex (ortholog) NW_004955435 15858056 15910486 + 102030233 AGCD01033287;AGCD01033288;AGCD01033289;GBCQ01153403;XM_005388955;XM_005388956;XM_005388957 XP_005389012;XP_005389013;XP_005389014 MODEL 10393158 ncrna LOC106149528 uncharacterized LOC106149528 NW_004955448 17891606 17910071 + 106149528 AGCD01041727;GBBH01182129;XR_001235780 MODEL 8972541 ncrna LOC102016249 uncharacterized LOC102016249 NW_004955412 22847602 22851538 - 102016249 AGCD01013058;GBDJ01295391;XR_260010 MODEL 8734297 protein-coding Siae sialic acid acetylesterase ENCODES a protein that exhibits sialate O-acetylesterase activity (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); regulation of immune system process (ortholog); ASSOCIATED WITH autoimmune disease (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN lysosome (ortholog) NW_004955412 25704024 25741646 - 102011521 AGCD01013171;AGCD01013172;AGCD01013173;GBBH01172315;XM_005378431;XM_005378432 XP_005378488;XP_005378489 MODEL 8844349 ncrna LOC102021847 uncharacterized LOC102021847 NW_004955455 13948091 13950615 - 102021847 AGCD01046080;GBDI01276709;XR_262858 MODEL 8914520 ncrna LOC102003476 uncharacterized LOC102003476 NW_004955431 22858925 22862195 + 102003476 AGCD01030524;GBDJ01402645;XR_261494 MODEL 8985823 pseudo LOC102023821 cytoskeleton-associated protein 2-like pseudogene NW_004955426 24937221 24939393 + 102023821 AGCD01026698 MODEL 10091762 ncrna LOC106150196 uncharacterized LOC106150196 NW_004955468 4671750 4672827 + 106150196 AGCD01051919;GBDJ01097284;XR_001236872 MODEL 39132587 snrna U6 U6 spliceosomal RNA 10282822 ncrna LOC106149680 uncharacterized LOC106149680 NW_004955451 15066678 15070557 + 106149680 AGCD01043593;AGCD01043594;XR_001235998 MODEL 10151702 ncrna LOC106149235 uncharacterized LOC106149235 NW_004955441 13547103 13570486 - 106149235 AGCD01037154;GBBH01196398;XR_001235285;XR_001235286 MODEL 9000121 protein-coding Kremen2 kringle containing transmembrane protein 2 INVOLVED IN limb development (ortholog); negative regulation of ossification (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); high grade glioma (ortholog) NW_004955442 14376466 14381106 - 102011482 AGCD01037815;GBDJ01113919;XM_005391388;XM_005391389;XM_013517862 XP_005391445;XP_005391446;XP_013373316 MODEL 8827910 ncrna LOC102005020 uncharacterized LOC102005020 NW_004955467 11742739 11757242 - 102005020 AGCD01051616;AGCD01051617;GBDF01289227;XR_263362 MODEL 8821515 protein-coding Ypel5 yippee like 5 FOUND IN ubiquitin ligase complex (ortholog) NW_004955469 11955257 11967360 + 102019684 AGCD01052573;AGCD01052574;GBDF01043947;XM_005400547;XM_005400548;XM_005400549;XM_005400550 XP_005400604;XP_005400605;XP_005400606;XP_005400607 MODEL 10208783 ncrna LOC106149681 uncharacterized LOC106149681 NW_004955451 5831327 5844399 - 106149681 AGCD01043180;AGCD01043181;AGCD01043182;GBDJ01267662;XR_001236003 MODEL 8840166 protein-coding Lrrc24 leucine rich repeat containing 24 INVOLVED IN positive regulation of synapse assembly (ortholog); ASSOCIATED WITH Baller-Gerold syndrome (ortholog); Recombinant Chromosome 8 Syndrome (ortholog) NW_004955454 3146712 3151828 - 102015921 AGCD01045057;GBDI01226178;XM_005395923;XM_005395928;XM_013520073;XM_013520074 XP_005395980;XP_005395985;XP_013375527;XP_013375528 MODEL 8774884 protein-coding Lcn8 lipocalin 8 INVOLVED IN response to hormone (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog) NW_004955513 4877845 4879978 - 102028452 AGCD01066943;XM_013506582 XP_013362036 MODEL 9044954 protein-coding Scap SREBF chaperone ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN cholesterol metabolic process (ortholog); immune response (ortholog); lipid metabolic process (ortholog); PARTICIPATES IN sterol regulatory element-binding protein signaling pathway; ASSOCIATED WITH end stage renal disease (ortholog); Experimental Diabetes Mellitus (ortholog); hepatocellular carcinoma (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog); protein-containing complex (ortholog) NW_004955420 24813683 24869602 + 102005603 AGCD01021335;AGCD01021336;AGCD01021337;GBDF01090236;XM_013513390 XP_013368844 MODEL 8802316 protein-coding Dipk1a divergent protein kinase domain 1A ASSOCIATED WITH aplastic anemia (ortholog); congenital hypoplastic anemia (ortholog); Diamond-Blackfan anemia (ortholog) NW_004955423 1651562 1748651 + 102021023 AGCD01023444;AGCD01023445;AGCD01023446;AGCD01023447;AGCD01023448;AGCD01023449;AGCD01023450;AGCD01023451;GBCE01142261;XM_005385041 XP_005385098 MODEL 8712019 protein-coding Ift57 intraflagellar transport 57 INVOLVED IN apoptotic process (ortholog); heart looping (ortholog); keratinocyte proliferation (ortholog); ASSOCIATED WITH Huntington's disease (ortholog); orofaciodigital syndrome XVIII (ortholog); FOUND IN axoneme (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955427 8814298 8871671 - 102013524 AGCD01027078;AGCD01027079;GBBH01033666;XM_005386354 XP_005386411 MODEL 8793514 protein-coding LOC102022181 taste receptor type 2 member 13-like NW_004955413 7940665 7941612 + 102022181 AGCD01013838;XM_013511293 XP_013366747 MODEL 10316764 ncrna LOC106148723 uncharacterized LOC106148723 NW_004955403 9931547 9934302 - 106148723 AGCD01001917;GBDF01078588;XR_001234380 MODEL 10210341 protein-coding Ctu1 cytosolic thiouridylase subunit 1 ASSOCIATED WITH Animal Disease Models (ortholog); Breast Neoplasms (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN cytosol (ortholog) NW_004955558 959819 960369 - 106147428 AGCD01073408;GBCQ01013477;GBDI01384051;XM_013508884 XP_013364338 MODEL 8986037 ncrna LOC102004620 uncharacterized LOC102004620 NW_004955497 6989452 7027099 - 102004620 AGCD01062651;AGCD01062652;AGCD01062653;AGCD01062654;GBBH01127272;XR_001231442;XR_001231443;XR_001231444 MODEL 10173870 ncrna LOC106149529 uncharacterized LOC106149529 NW_004955448 6907649 6911130 + 106149529 AGCD01041396;GBDJ01297958;XR_001235781;XR_001235782 MODEL 10111431 ncrna LOC106147256 uncharacterized LOC106147256 NW_004955534 371615 379833 - 106147256 AGCD01070448;GBDI01213019;XR_001232051;XR_001232052 MODEL 8849300 protein-coding Lrrc25 leucine rich repeat containing 25 INVOLVED IN canonical NF-kappaB signal transduction (ortholog); connective tissue replacement involved in inflammatory response wound healing (ortholog); gene expression (ortholog); ASSOCIATED WITH Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); microtubule cytoskeleton (ortholog) NW_004955524 3118305 3122125 + 102023067 AGCD01068859;GBBH01185481;XM_005409572 XP_005409629 MODEL 8776911 pseudo LOC102003478 pre-mRNA-splicing regulator WTAP-like NW_004955514 116863 117609 + 102003478 AGCD01066997 MODEL 9022079 protein-coding Vsx2 visual system homeobox 2 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN camera-type eye development (ortholog); cell fate commitment (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH Anophthalmia (ortholog); blindness (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955523 1192035 1207949 - 102013535 AGCD01068504;AGCD01068505;AGCD01068506;AGCD01068507;GBDI01144358;XM_013507114;XM_013507115;XM_013507116 XP_013362568;XP_013362569;XP_013362570 MODEL 8878738 protein-coding Nop16 NOP16 nucleolar protein ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Liver Neoplasms (ortholog); pre-malignant neoplasm (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955408 28684179 28689709 - 102010674 AGCD01008722;GBDK01273819;XM_005376375 XP_005376432 MODEL 10203558 ncrna LOC106149530 uncharacterized LOC106149530 NW_004955448 8211175 8241615 + 106149530 AGCD01041437;AGCD01041438;GBDF01198097;XR_001235783 MODEL 8839260 ncrna LOC102023133 uncharacterized LOC102023133 NW_004955467 9636220 9637414 + 102023133 AGCD01051520;GBCB01098743;XR_263355 MODEL 8990513 protein-coding Ctu2 cytosolic thiouridylase subunit 2 ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); Animal Disease Models (ortholog); autosomal recessive chronic granulomatous disease 4 (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955541 2610021 2618197 + 102026798 AGCD01071418;AGCD01071419;GBBH01185371;XM_013507940 XP_013363394 MODEL 9015553 protein-coding Slc20a2 solute carrier family 20 member 2 ENCODES a protein that exhibits sodium:phosphate symporter activity (ortholog); virus receptor activity (ortholog); INVOLVED IN positive regulation of bone mineralization (ortholog); PARTICIPATES IN phosphate transport pathway; ASSOCIATED WITH basal ganglia calcification (ortholog); basal ganglia disease (ortholog); calcinosis (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); plasma membrane (ortholog) NW_004955536 392341 496616 + 102006389 AGCD01070726;AGCD01070727;AGCD01070728;GBCQ01041012;GBDK01002048;XM_005410504 XP_005410561 MODEL 8732730 pseudo LOC102003479 tumor susceptibility gene 101 protein pseudogene NW_004955515 383004 383850 - 102003479 AGCD01067198;XR_264530 MODEL 8729687 protein-coding Borcs5 BLOC-1 related complex subunit 5 INVOLVED IN lysosome localization (ortholog); nervous system development (ortholog); organelle transport along microtubule (ortholog); ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); autosomal dominant intellectual developmental disorder 6 (ortholog); colorectal adenocarcinoma (ortholog); FOUND IN axon (ortholog); BORC complex (ortholog); cytoplasmic side of lysosomal membrane (ortholog) NW_004955413 9309766 9399378 + 102015707 AGCD01013902;AGCD01013903;GBCE01187874;XM_005378962;XM_005378964;XM_013511430;XM_013511431 XP_005379019;XP_005379021;XP_013366884;XP_013366885 MODEL 8914888 ncrna LOC102012908 uncharacterized LOC102012908 NW_004955444 12340446 12343731 - 102012908 AGCD01039069;GBDK01125336;XR_262259 MODEL 9007939 ncrna LOC102017273 uncharacterized LOC102017273 NW_004955437 5669384 5671930 - 102017273 AGCD01034396;GBDF01181793;XR_261854 MODEL 39133575 snrna U2 U2 spliceosomal RNA 10270175 ncrna LOC106149531 uncharacterized LOC106149531 NW_004955448 8188724 8192815 - 106149531 AGCD01041437;GBCE01178120;XR_001235784 MODEL 8998755 protein-coding Slc22a11 solute carrier family 22 member 11 ENCODES a protein that exhibits organic anion transmembrane transporter activity (ortholog); prostaglandin transmembrane transporter activity (ortholog); sodium-independent organic anion transmembrane transporter activity (ortholog); INVOLVED IN organic anion transport (ortholog); prostaglandin transport (ortholog); urate metabolic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); multiple endocrine neoplasia type 1 (ortholog); FOUND IN apical plasma membrane (ortholog); external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955422 20582736 20595872 - 102008741 AGCD01023084;GBCQ01008134;XM_005384592;XM_013513819 XP_005384649;XP_013369273 MODEL 10296623 ncrna LOC106149532 uncharacterized LOC106149532 NW_004955448 8074930 8112070 - 106149532 AGCD01041434;AGCD01041435;AGCD01041436;GBDK01393642;XR_001235785;XR_001235786 MODEL 8831853 protein-coding Ift74 intraflagellar transport 74 ENCODES a protein that exhibits beta-tubulin binding (ortholog); chromatin binding (ortholog); INVOLVED IN cilium assembly (ortholog); determination of left/right symmetry (ortholog); epidermis development (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); autism spectrum disorder (ortholog); Bardet-Biedl syndrome 22 (ortholog); FOUND IN centrosome (ortholog); cilium (ortholog); intraciliary transport particle B (ortholog) NW_004955472 7779705 7872423 - 102027292 AGCD01053629;AGCD01053630;AGCD01053631;AGCD01053632;AGCD01053633;GBDI01297180;XM_005401156 XP_005401213 MODEL 8812331 pseudo LOC102023823 60S ribosomal protein L6-like NW_004955505 3444579 3445461 + 102023823 AGCD01065025 MODEL 10246594 ncrna LOC106150197 uncharacterized LOC106150197 NW_004955468 7537920 7561963 - 106150197 AGCD01052002;XR_001236873 MODEL 10075833 ncrna LOC106148724 uncharacterized LOC106148724 NW_004955427 9560549 9574959 - 106148724 AGCD01027102;GBCE01183111;XR_001234382;XR_001234383;XR_001234384;XR_001234385 MODEL 8774439 protein-coding Siah1 siah E3 ubiquitin protein ligase 1 ENCODES a protein that exhibits disordered domain specific binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); male meiosis I (ortholog); neuron apoptotic process (ortholog); ASSOCIATED WITH BURATTI-HAREL SYNDROME (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN beta-catenin destruction complex (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955474 6970383 6982231 + 102006904 AGCD01054511;GBCB01039065;GBDF01043021;XM_005401400 XP_005401457 MODEL 8766572 ncrna LOC102022768 uncharacterized LOC102022768 NW_004955600 387729 392116 + 102022768 AGCD01076708;GBDF01162760;XR_265156 MODEL 9041720 protein-coding Esrra estrogen related receptor alpha ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN cartilage development (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of cellular response to insulin stimulus (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Breast Neoplasms (ortholog); congestive heart failure (ortholog); FOUND IN cytoplasm (ortholog); fibrillar center (ortholog); intercellular bridge (ortholog) NW_004955422 20768450 20775205 - 102011328 AGCD01023086;GBCB01005642;GBDF01188656;XM_005384600 XP_005384657 MODEL 10211810 ncrna LOC106147257 uncharacterized LOC106147257 NW_004955534 379864 393940 - 106147257 AGCD01070448;AGCD01070449;GBBH01192651;XR_001232053;XR_001232055 MODEL 10228065 protein-coding LOC106150198 leucine-twenty homeobox-like NW_004955468 10972 13207 + 106150198 AGCD01051674;XM_013522283 XP_013377737 MODEL 39131380 protein-coding IFT80 intraflagellar transport 80 8752181 pseudo LOC102004316 myb/SANT-like DNA-binding domain-containing protein 3 pseudogene NW_004955530 335889 336767 + 102004316 AGCD01069846 MODEL 8795674 protein-coding Yrdc yrdC N6-threonylcarbamoyltransferase domain containing ENCODES a protein that exhibits L-threonylcarbamoyladenylate synthase (ortholog); INVOLVED IN negative regulation of transport (ortholog); tRNA threonylcarbamoyladenosine modification (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); Galloway-Mowat Syndrome 10 (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); mitochondrion (ortholog) NW_004955452 15575421 15579186 - 102014973 AGCD01044488;GBCQ01072791;XM_005395220 XP_005395277 MODEL 8830038 protein-coding Ctxn1 cortexin 1 ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 5 (ortholog); mucolipidosis type IV (ortholog) NW_004955563 1343212 1344056 + 102018444 AGCD01074142;GBBH01001939;GBCB01089641;XM_005413139 XP_005413196 MODEL 8892923 protein-coding Tnp2 transition protein 2 ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN acrosome reaction (ortholog); binding of sperm to zona pellucida (ortholog); flagellated sperm motility (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 1C (ortholog); Landau-Kleffner syndrome (ortholog); MHC class II deficiency (ortholog); FOUND IN male germ cell nucleus (ortholog); nucleosome (ortholog); nucleus (ortholog) NW_004955442 7311826 7314046 + 102005850 AGCD01037623;GBDK01130457;XM_013517647 XP_013373101 MODEL 8748083 protein-coding Znf584 zinc finger protein 584 NW_004955584 1059293 1068800 + 102029810 AGCD01075977;AGCD01075978;GBCE01001472;XM_013509850 XP_013365304 MODEL 8801249 protein-coding Rpa2 replication protein A2 ENCODES a protein that exhibits damaged DNA binding (ortholog); DNA binding (ortholog); enzyme binding (ortholog); INVOLVED IN base-excision repair (ortholog); DNA replication (ortholog); double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); DNA replication factor A complex (ortholog) NW_004955452 7080641 7098009 - 102011170 AGCD01044131;GBCB01043885;XM_005394935;XM_013519742;XM_013519743 XP_005394992;XP_013375196;XP_013375197 MODEL 8889531 protein-coding Ift80 intraflagellar transport 80 INVOLVED IN apoptotic process (ortholog); articular cartilage development (ortholog); bone development (ortholog); ASSOCIATED WITH Asphyxia (ortholog); asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955448 10808940 10819655 - 102003296 AGCD01041503;GBCB01121051;XM_013518599 XP_013374053 MODEL 8919715 ncrna LOC102012909 uncharacterized LOC102012909 NW_004955445 3519216 3530963 + 102012909 AGCD01039396;GBDF01083032;XR_262300 MODEL 9024557 pseudo LOC102027661 homeodomain-interacting protein kinase 3-like NW_004955427 20503771 20507557 + 102027661 AGCD01027403 MODEL 8751177 protein-coding Scaper S-phase cyclin A associated protein in the ER INVOLVED IN antral ovarian follicle growth (ortholog); ovarian follicle development (ortholog); retina development in camera-type eye (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome 1 (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955450 1479983 1821681 - 102017934 AGCD01042364;AGCD01042365;AGCD01042366;AGCD01042367;AGCD01042368;AGCD01042369;AGCD01042370;AGCD01042371;GBDK01433909;XM_005393474;XM_005393475;XM_005393476;XM_013519009 XP_005393531;XP_005393532;XP_005393533;XP_013374463 MODEL 9026314 protein-coding LOC102027213 uncharacterized LOC102027213 NW_004955429 21619144 21633759 - 102027213 AGCD01029007;GBDK01228368;XM_005387268 XP_005387325 MODEL 10172533 ncrna LOC106149236 uncharacterized LOC106149236 NW_004955441 14795883 14798941 - 106149236 AGCD01037222;GBDK01344176;XR_001235287;XR_001235288 MODEL 8906443 protein-coding Ctxn2 cortexin 2 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Marfan syndrome (ortholog) NW_004955409 5685318 5695682 - 102013255 AGCD01009321;GBDF01260793;XM_005376706;XM_005376707 XP_005376763;XP_005376764 MODEL 8769037 protein-coding Tgfbr1 transforming growth factor beta receptor 1 ENCODES a protein that exhibits ATP binding (ortholog); growth factor binding (ortholog); I-SMAD binding (ortholog); INVOLVED IN angiogenesis (ortholog); angiogenesis involved in coronary vascular morphogenesis (ortholog); animal organ regeneration (ortholog); PARTICIPATES IN altered transforming growth factor-beta Smad dependent signaling pathway; colorectal cancer pathway; glypican signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Animal Disease Models (ortholog); aortic disease (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); bicellular tight junction (ortholog) NW_004955419 26490899 26546349 - 102016055 AGCD01020410;AGCD01020411;AGCD01020412;AGCD01020413;GBDF01223975;XM_005382822;XM_005382823;XM_013513285 XP_005382879;XP_005382880;XP_013368739 MODEL 8742817 protein-coding Kri1 KRI1 homolog ASSOCIATED WITH familial hypercholesterolemia (ortholog); immunodeficiency 35 (ortholog); FOUND IN nucleolus (ortholog) NW_004955495 1746060 1754883 - 102007348 AGCD01061722;AGCD01061723;GBDK01139509;XM_005405604;XM_013505133;XM_013505134 XP_005405661;XP_013360587;XP_013360588 MODEL 8851907 protein-coding Nsmaf neutral sphingomyelinase activation associated factor ENCODES a protein that exhibits sphingomyelin phosphodiesterase activator activity (ortholog); INVOLVED IN positive regulation of amide metabolic process (ortholog); positive regulation of apoptotic process (ortholog); positive regulation of lipid metabolic process (ortholog); PARTICIPATES IN ceramide signaling pathway; tumor necrosis factor mediated signaling pathway NW_004955454 17113817 17162900 - 102016888 AGCD01045545;AGCD01045546;AGCD01045547;GBCQ01151799;GBDI01170604;XM_013520109 XP_013375563 MODEL 8711726 pseudo LOC102023825 thyroid hormone receptor-associated protein 3 pseudogene NW_004955506 3169804 3172644 + 102023825 AGCD01065313 MODEL 8743848 protein-coding LOC102027664 olfactory receptor 5B2-like NW_004955511 3139769 3144628 - 102027664 AGCD01066444;AGCD01066445;GBDF01152944;GBDF01152947;XM_005408027 XP_005408084 MODEL 9026602 protein-coding LOC102022769 vomeronasal type-1 receptor 3-like NW_004955604 431062 441316 + 102022769 AGCD01076903;GBDF01230009;XM_005414884 XP_005414941 MODEL 9018613 protein-coding Mlph melanophilin ENCODES a protein that exhibits actin binding (ortholog); microtubule plus-end binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN melanocyte differentiation (ortholog); melanosome localization (ortholog); pigmentation (ortholog); ASSOCIATED WITH alopecia (ortholog); Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); cortical actin cytoskeleton (ortholog); dendrite (ortholog) NW_004955542 2769709 2807768 - 102008571 AGCD01071537;AGCD01071538;GBBH01185878;XM_005411228;XM_005411229;XM_005411231;XM_005411232 XP_005411285;XP_005411286;XP_005411288;XP_005411289 MODEL 8736685 pseudo LOC102003482 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 pseudogene NW_004955535 3151906 3152089 + 102003482 AGCD01070687 MODEL 8757183 protein-coding LOC102027278 sodium-dependent glucose transporter 1A-like NW_004955411 35918450 35931807 + 102027278 AGCD01012458;GBCQ01004872;XM_013510861 XP_013366315 MODEL 10127700 protein-coding LOC106150199 translation initiation factor IF-2-like NW_004955468 147956 153266 - 106150199 AGCD01051683;AGCD01051684;GBBH01149661;GBDI01227640;XM_013522284 XP_013377738 MODEL 8885848 ncrna LOC102017274 uncharacterized LOC102017274 NW_004955437 13226136 13228012 - 102017274 AGCD01034653;GBCB01098820;XR_261876 MODEL 8858310 protein-coding LOC102027667 cocaine esterase-like NW_004955433 23454986 23459051 + 102027667 AGCD01031965;GBCB01112609;XM_013516229 XP_013371683 MODEL 8713163 protein-coding LOC102004318 vomeronasal type-2 receptor 116-like NW_004955532 320637 360886 - 102004318 AGCD01070114;AGCD01070115;AGCD01070116;XM_013507576 XP_013363030 MODEL 39133576 snrna U2 U2 spliceosomal RNA 8726571 pseudo LOC102003484 RNA-binding protein 25 pseudogene NW_004955437 14612893 14618799 - 102003484 AGCD01034678 MODEL 8956589 protein-coding LOC102012915 uncharacterized LOC102012915 NW_004955450 14986194 14993012 + 102012915 AGCD01042775;GBDF01058226;XM_013518836 XP_013374290 MODEL 8760968 protein-coding Rpa3 replication protein A3 ENCODES a protein that exhibits damaged DNA binding (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN base-excision repair (ortholog); DNA repair (ortholog); DNA replication (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; FOUND IN DNA replication factor A complex (ortholog) NW_004955432 14723933 14727356 - 102027443 AGCD01031047;GBDI01168506;XM_005388093 XP_005388150 MODEL 9010730 ncrna LOC102027669 uncharacterized LOC102027669 NW_004955524 1167102 1181132 - 102027669 AGCD01068738;GBDF01201489;XR_264646 MODEL 8760748 protein-coding LOC102020553 T-cell surface glycoprotein YE1/48-like NW_004955413 7208798 7216466 + 102020553 AGCD01013804;GBDF01197316;XM_005379618 XP_005379675 MODEL 39132712 snrna U6 U6 spliceosomal RNA 10163415 ncrna LOC106149237 uncharacterized LOC106149237 NW_004955441 10156137 10161739 + 106149237 AGCD01037076;GBDJ01049785;XR_001235289 MODEL 10242410 ncrna LOC106147258 uncharacterized LOC106147258 NW_004955408 27499942 27516174 + 106147258 AGCD01008679;XR_001232057 MODEL 8739858 protein-coding LOC102003491 U3 small nucleolar RNA-associated protein 14 homolog A-like NW_004955546 975313 987398 + 102003491 AGCD01072034;GBBH01046731;XM_005411756 XP_005411813 MODEL 8888214 ncrna LOC102016250 uncharacterized LOC102016250 NW_004955466 8824099 8836048 + 102016250 AGCD01051001;GBDF01015997;XR_263298 MODEL 39132714 snrna U6 U6 spliceosomal RNA 9018313 protein-coding Borcs6 BLOC-1 related complex subunit 6 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN lysosome localization (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); Diamond-Blackfan anemia (ortholog); dyskeratosis congenita (ortholog); FOUND IN BORC complex (ortholog) NW_004955467 8766322 8769169 + 102022801 AGCD01051471;GBBH01198077;XM_005399428 XP_005399485 MODEL 39132588 snrna U6 U6 spliceosomal RNA 8764643 ncrna LOC102022184 uncharacterized LOC102022184 NW_004955470 7992536 7997200 - 102022184 AGCD01052816;AGCD01052817;GBDF01304651;XR_263476 MODEL 8992920 protein-coding Nfe2l3 NFE2 like bZIP transcription factor 3 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH keratoconus (ortholog); Neurodevelopmental Disorders (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN RNA polymerase II transcription regulator complex (ortholog) NW_004955410 27999098 28031941 + 102025771 AGCD01011228;GBCE01111400;XM_005377433 XP_005377490 MODEL 39132717 snrna U6 U6 spliceosomal RNA 8908136 ncrna LOC102003492 uncharacterized LOC102003492 NW_004955442 7304160 7304657 + 102003492 AGCD01037623;GBDF01000001;XR_262125 MODEL 8810772 protein-coding Ift81 intraflagellar transport 81 ENCODES a protein that exhibits tubulin binding (ortholog); INVOLVED IN cilium assembly (ortholog); intraciliary transport involved in cilium assembly (ortholog); regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); ciliopathy (ortholog); Dwarfism (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955482 7114639 7182378 + 102020121 AGCD01057438;AGCD01057439;AGCD01057440;AGCD01057441;AGCD01057442;AGCD01057443;GBDF01125793;XM_005403140;XM_013503735 XP_005403197;XP_013359189 MODEL 8857582 protein-coding Gpx4 glutathione peroxidase 4 ENCODES a protein that exhibits glutathione peroxidase activity (ortholog); identical protein binding (ortholog); phospholipid-hydroperoxide glutathione peroxidase activity (ortholog); INVOLVED IN apoptotic process (ortholog); arachidonate metabolic process (ortholog); cerebellum development (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); acute kidney failure (ortholog); Binge Drinking (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nuclear envelope (ortholog) NW_004955495 6767969 6772256 - 102011883 AGCD01062090;AGCD01062091;AGCD01062092;GBDF01008530;XM_005405994 XP_005406051 MODEL 39133473 snrna U2 U2 spliceosomal RNA 8721051 protein-coding Tnpo1 transportin 1 INVOLVED IN protein import into nucleus (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955425 27666091 27748920 - 102009966 AGCD01025978;AGCD01025979;AGCD01025980;AGCD01025981;AGCD01025982;GBCB01061676;XM_005386079;XM_005386080;XM_005386081;XM_005386082;XM_013514849 XP_005386136;XP_005386137;XP_005386138;XP_005386139;XP_013370303 MODEL 9040077 protein-coding Mlst8 MTOR associated protein, LST8 homolog ENCODES a protein that exhibits protein serine/threonine kinase activator activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN positive regulation of actin filament polymerization (ortholog); positive regulation of peptidyl-tyrosine phosphorylation (ortholog); positive regulation of TOR signaling (ortholog); PARTICIPATES IN mTOR signaling pathway; phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); developmental and epileptic encephalopathy 1 (ortholog); endometrial carcinoma (ortholog); FOUND IN cytoplasm (ortholog); serine/threonine protein kinase complex (ortholog); TORC1 complex (ortholog) NW_004955442 15056363 15060300 - 102027794 AGCD01037856;GBDJ01278611;XM_005391442;XM_013517730;XM_013517731;XM_013517732 XP_005391499;XP_013373184;XP_013373185;XP_013373186 MODEL 39132590 snrna U6 U6 spliceosomal RNA 8801680 protein-coding LOC102026209 olfactory receptor 51A4-like NW_004955414 21018291 21019244 - 102026209 AGCD01015402;XM_005380071 XP_005380128 MODEL 9028449 protein-coding Tstd2 thiosulfate sulfurtransferase like domain containing 2 ASSOCIATED WITH congenital disorder of glycosylation Ii (ortholog); congenital disorder of glycosylation type II (ortholog); congenital myasthenic syndrome 14 (ortholog) NW_004955419 27820265 27841210 + 102023477 AGCD01020448;GBDJ01031238;XM_005382843;XM_005382844;XM_005382845;XM_005382847;XM_005382848 XP_005382900;XP_005382901;XP_005382902;XP_005382904;XP_005382905 MODEL 9068152 protein-coding Nop2 NOP2 nucleolar protein ENCODES a protein that exhibits rRNA (cytosine-C5-)-methyltransferase activity (ortholog); INVOLVED IN blastocyst formation (ortholog); positive regulation of cell population proliferation (ortholog); regulation of signal transduction by p53 class mediator (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); peroxisome biogenesis disorder 2B (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955413 4180463 4190827 - 102015825 AGCD01013601;GBCQ01042160;XM_013511316 XP_013366770 MODEL 8777011 protein-coding Vta1 vesicle trafficking 1 INVOLVED IN multivesicular body sorting pathway (ortholog); ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955436 18017190 18072285 - 102010407 AGCD01033954;AGCD01033955;GBCQ01126243;XM_005389255;XM_013516679 XP_005389312;XP_013372133 MODEL 9016187 protein-coding Rpa4 replication protein A4 INVOLVED IN DNA damage checkpoint signaling (ortholog); DNA repair (ortholog); nuclear DNA replication (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); developmental and epileptic encephalopathy 9 (ortholog); FOUND IN DNA replication factor A complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955503 2514460 2516973 + 102018415 AGCD01064608;XM_005406926 XP_005406983 MODEL 8823529 protein-coding Lcn9 lipocalin 9 ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog) NW_004955513 4786615 4788768 - 102021159 AGCD01066939;GBDF01055414;XM_005408546 XP_005408603 MODEL 9033854 protein-coding Tbc1d10b TBC1 domain family member 10B ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN regulation of cilium assembly (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN plasma membrane (ortholog) NW_004955493 7286030 7298223 - 102012446 AGCD01061175;AGCD01061176;AGCD01061177;GBCE01117663;GBCE01117664;XM_005405250 XP_005405307 MODEL 8875157 protein-coding Krit1 KRIT1 ankyrin repeat containing ENCODES a protein that exhibits microtubule binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN cell redox homeostasis (ortholog); integrin activation (ortholog); negative regulation of angiogenesis (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH Angiokeratoma Corporis Diffusum with Arteriovenous Fistulas (ortholog); cavernous hemangioma (ortholog); Cavernous Malformations of CNS and Retina (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); plasma membrane (ortholog) NW_004955432 9168678 9219947 - 102029319 AGCD01030898;GBDJ01354840;XM_005388010;XM_005388011 XP_005388067;XP_005388068 MODEL 9012201 protein-coding Pqbp1 polyglutamine binding protein 1 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); GTPase binding (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); alternative mRNA splicing, via spliceosome (ortholog); cellular response to exogenous dsRNA (ortholog); ASSOCIATED WITH atrial heart septal defect (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); ciliary base (ortholog) NW_004955543 430324 434205 + 102026569 AGCD01071585;GBDF01290192;XM_005411285;XM_005411286;XM_005411287 XP_005411342;XP_005411343;XP_005411344 MODEL 9027487 protein-coding LOC102020557 L-lactate dehydrogenase C chain ENCODES a protein that exhibits L-lactate dehydrogenase activity (ortholog); INVOLVED IN ATP biosynthetic process (ortholog); flagellated sperm motility (ortholog); lactate biosynthetic process from pyruvate (ortholog); ASSOCIATED WITH hypertrophic cardiomyopathy 12 (ortholog); intellectual disability (ortholog); lung disease (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955414 33109535 33138756 + 102020557 AGCD01015798;AGCD01015799;GBDF01007080;XM_005380415;XM_005380416;XM_013511839 XP_005380472;XP_005380473;XP_013367293 MODEL 9023614 protein-coding Nop53 NOP53 ribosome biogenesis factor ENCODES a protein that exhibits 5S rRNA binding (ortholog); identical protein binding (ortholog); p53 binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); DNA damage response (ortholog); DNA repair (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955574 1505997 1514680 + 102014508 AGCD01075184;AGCD01075185;GBDK01019431;XM_005413884;XM_005413885 XP_005413941;XP_005413942 MODEL 8887529 protein-coding Znf585a zinc finger protein 585A NW_004955468 1802467 1817642 - 102025341 AGCD01051782;GBDF01306180;XM_005399884;XM_005399885;XM_013522304 XP_005399941;XP_005399942;XP_013377758 MODEL 9065175 pseudo LOC102016252 nucleosome assembly protein 1-like 1 NW_004955467 1693812 1695006 + 102016252 AGCD01051276 MODEL 8849157 ncrna LOC102017275 uncharacterized LOC102017275 NW_004955541 513119 516756 - 102017275 AGCD01071353;GBDK01060528;XR_264830 MODEL 8976573 pseudo LOC102027283 putative olfactory receptor 8G3 pseudogene NW_004955412 25005897 25013138 + 102027283 AGCD01013133 MODEL 8706873 protein-coding LOC102020558 olfactory receptor 52B4-like NW_004955414 20016773 20017717 + 102020558 AGCD01015350;XM_005380462 XP_005380519 MODEL 9034241 ncrna LOC102028893 uncharacterized LOC102028893 NW_004955437 6332056 6339709 + 102028893 AGCD01034431;AGCD01034432;AGCD01034433;GBBH01078729;XR_001235023;XR_261863 MODEL 9030734 ncrna LOC102023135 uncharacterized LOC102023135 NW_004955413 10767169 10776931 + 102023135 AGCD01013937;GBDF01016432;XR_260075 MODEL 8917849 protein-coding LOC102027215 olfactory receptor 4P4-like NW_004955511 376807 378678 + 102027215 AGCD01066330;XM_005408188 XP_005408245 MODEL 8724084 protein-coding Siah2 siah E3 ubiquitin protein ligase 2 ENCODES a protein that exhibits ubiquitin conjugating enzyme binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN estrogen signaling pathway; nuclear factor, erythroid 2 like 2 signaling pathway; ASSOCIATED WITH glycogen storage disease XV (ortholog); lens disease (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955448 1907478 1926445 - 102018449 AGCD01041271;GBDJ01180931;GBDK01196937;XM_013518651 XP_013374105 MODEL 8716882 ncrna LOC102017276 uncharacterized LOC102017276 NW_004955441 14023333 14027820 + 102017276 AGCD01037169;GBDJ01298866;XR_262078 MODEL 8854225 protein-coding LOC102003495 protein PBDC1-like NW_004955562 2207581 2209840 + 102003495 AGCD01074028;GBCE01099202;GBDI01000979;XM_005413095 XP_005413152 MODEL 8892709 pseudo LOC102028895 coiled-coil domain-containing protein 152-like NW_004955538 3289351 3290444 - 102028895 AGCD01071157 MODEL 8906530 protein-coding Gpx7 glutathione peroxidase 7 ENCODES a protein that exhibits catalase activity (ortholog); peroxidase activity (ortholog); ASSOCIATED WITH Barrett's adenocarcinoma (ortholog); Barrett's esophagus (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955464 6560198 6566763 - 102017106 AGCD01050031;AGCD01050032;GBCE01067129;XM_005398574 XP_005398631 MODEL 8809546 ncrna LOC102027217 uncharacterized LOC102027217 NW_004955513 3912970 3915172 - 102027217 AGCD01066912;XR_264471 MODEL 9025072 pseudo LOC102026210 glutathione peroxidase 1-like NW_004955470 3805877 3806570 + 102026210 AGCD01052712 MODEL 8757861 protein-coding Tstd3 thiosulfate sulfurtransferase like domain containing 3 ASSOCIATED WITH Dwarfism (ortholog); Experimental Liver Cirrhosis (ortholog); Leber congenital amaurosis 19 (ortholog) NW_004955411 25392449 25403237 + 102025555 AGCD01012155;GBCE01181628;GBDI01024644;XM_005377810 XP_005377867 MODEL 8955451 ncrna LOC102021848 uncharacterized LOC102021848 NW_004955407 40111586 40113235 - 102021848 AGCD01007838;GBDF01059141;XR_001231372 MODEL 8997884 protein-coding Lrrc26 leucine rich repeat containing 26 ENCODES a protein that exhibits potassium channel activator activity (ortholog); potassium channel regulator activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN positive regulation of voltage-gated potassium channel activity (ortholog); potassium ion transmembrane transport (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN plasma membrane (ortholog); voltage-gated potassium channel complex (ortholog) NW_004955513 5178631 5180462 - 102005405 AGCD01066961;GBDI01129411;XM_005408584 XP_005408641 MODEL 8770101 ncrna LOC102028897 uncharacterized LOC102028897 NW_004955438 15069554 15071930 + 102028897 AGCD01035359;GBDF01020711;XR_261936 MODEL 9041332 protein-coding Tbc1d10c TBC1 domain family member 10C INVOLVED IN B cell activation (ortholog); calcineurin-NFAT signaling cascade (ortholog); ERK1 and ERK2 cascade (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); immunodeficiency 90 (ortholog); intellectual disability (ortholog); FOUND IN filopodium membrane (ortholog); plasma membrane (ortholog) NW_004955422 18069686 18075795 - 102023046 AGCD01022936;GBDF01294484;XM_005384347;XM_005384348 XP_005384404;XP_005384405 MODEL 10141906 ncrna LOC106148725 uncharacterized LOC106148725 NW_004955403 11338565 11344347 - 106148725 AGCD01001952;GBDI01249492;XR_001234387;XR_001234388 MODEL 9000969 protein-coding Nop56 NOP56 ribonucleoprotein ENCODES a protein that exhibits histone methyltransferase binding (ortholog); RNA binding (ortholog); snoRNA binding (ortholog); INVOLVED IN ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH Animal Disease Models (ortholog); cerebellar ataxia (ortholog); Disease Progression (ortholog); FOUND IN box C/D methylation guide snoRNP complex (ortholog); fibrillar center (ortholog); pre-snoRNP complex (ortholog) NW_004955415 13637505 13642809 + 102016587 AGCD01016263;GBBH01091916;XM_005380758 XP_005380815 MODEL 8839454 ncrna LOC102027671 uncharacterized LOC102027671 NW_004955435 14989335 15035929 - 102027671 AGCD01033259;GBDF01007451;XR_001234874;XR_261699 MODEL 8971998 ncrna LOC102023828 uncharacterized LOC102023828 NW_004955429 15272587 15276664 + 102023828 AGCD01028800;AGCD01028801;GBDF01074366;XR_261337 MODEL 8976349 pseudo LOC102020560 gamma-soluble NSF attachment protein pseudogene NW_004955475 903589 940616 + 102020560 AGCD01054718;AGCD01054719;AGCD01054720 MODEL 8922542 protein-coding LOC102012916 tripartite motif-containing protein 60 NW_004955403 40239714 40250397 - 102012916 AGCD01002675;AGCD01002676;GBDF01161849;XM_005373589;XM_013515246;XM_013515248 XP_005373646;XP_013370700;XP_013370702 MODEL 8863893 protein-coding Ythdc1 YTH N6-methyladenosine RNA binding protein C1 ENCODES a protein that exhibits N6-methyladenosine-containing RNA reader activity (ortholog); RNA binding (ortholog); INVOLVED IN dosage compensation by inactivation of X chromosome (ortholog); in utero embryonic development (ortholog); mRNA alternative polyadenylation (ortholog); FOUND IN nuclear body (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955447 4474920 4505359 - 102008360 AGCD01040720;AGCD01040721;GBBH01088991;GBDK01084131;XM_005392822 XP_005392879 MODEL 8929230 protein-coding Nop58 NOP58 ribonucleoprotein ENCODES a protein that exhibits ATPase binding (ortholog); snoRNA binding (ortholog); TFIID-class transcription factor complex binding (ortholog); INVOLVED IN ribosomal small subunit biogenesis (ortholog); snoRNA localization (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH Animal Disease Models (ortholog); autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); FOUND IN box C/D methylation guide snoRNP complex (ortholog); Cajal body (ortholog); cytosol (ortholog) NW_004955457 12481467 12511678 - 102007858 AGCD01047016;AGCD01047017;GBCC01019221;XM_005397058;XM_013520776 XP_005397115;XP_013376230 MODEL 9067359 protein-coding Nsmce1 NSE1 homolog, SMC5-SMC6 complex component ENCODES a protein that exhibits protein dimerization activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN DNA damage response (ortholog); FOUND IN chromosome, centromeric region (ortholog); intracellular membrane-bounded organelle (ortholog); mitotic spindle pole (ortholog) NW_004955493 5468028 5498490 - 102006142 AGCD01061068;GBDJ01128693;XM_005405135;XM_013504878;XM_013504879 XP_005405192;XP_013360332;XP_013360333 MODEL 10230958 ncrna LOC106147259 uncharacterized LOC106147259 NW_004955536 2238235 2247357 - 106147259 AGCD01070777;GBDF01110737;XR_001232058 MODEL 8785820 protein-coding LOC102017277 olfactory receptor 11H6-like NW_004955550 834800 835741 + 102017277 AGCD01072525;XM_005412037 XP_005412094 MODEL 8733903 ncrna LOC102023830 uncharacterized LOC102023830 NW_004955429 22467556 22469699 + 102023830 AGCD01029028;GBDF01162819;XR_261387 MODEL 8963119 ncrna LOC102003499 uncharacterized LOC102003499 NW_004955446 7604429 7625603 + 102003499 AGCD01040126;GBDF01002983;XR_262378;XR_262379 MODEL 10314282 pseudo LOC106150200 Krueppel-related zinc finger protein 1-like NW_004955468 1852519 1857791 + 106150200 AGCD01051784 MODEL 8735981 ncrna LOC102027222 uncharacterized LOC102027222 NW_004955522 3281958 3313821 - 102027222 AGCD01068381;GBDF01193590;XR_001231908;XR_001231909;XR_264621 MODEL 10374300 ncrna LOC106147260 uncharacterized LOC106147260 NW_004955408 7642558 7651543 - 106147260 AGCD01008204;AGCD01008205;GBDF01068347;XR_001232059 MODEL 10153373 ncrna LOC106149682 uncharacterized LOC106149682 NW_004955452 11152368 11153905 - 106149682 AGCD01044328;GBBH01039470;XR_001236004 MODEL 8712636 protein-coding Krr1 KRR1 small subunit processome component homolog INVOLVED IN ribosomal small subunit biogenesis (ortholog); FOUND IN chromosome (ortholog); intercellular bridge (ortholog); nucleolus (ortholog) NW_004955405 14851602 14864838 - 102009909 AGCD01004933;GBDK01195874;XM_005374336 XP_005374393 MODEL 8964927 protein-coding Nfia nuclear factor I A ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN BMP signaling pathway (ortholog); cartilage development (ortholog); cell morphogenesis (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH congenital disorder of glycosylation It (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cell junction (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955423 27799976 28108307 - 102014581 AGCD01024141;AGCD01024142;GBCQ01095231;GBDK01003646;XM_013514428 XP_013369882 MODEL 8894270 protein-coding LOC102028899 zinc finger protein 136-like NW_004955546 756613 783636 - 102028899 AGCD01072021;AGCD01072022;AGCD01072023;AGCD01072024;GBCB01041265;XM_013508413 XP_013363867 MODEL 39133475 snrna U2 U2 spliceosomal RNA 9000478 protein-coding Lrrc27 leucine rich repeat containing 27 ASSOCIATED WITH distal 10q deletion syndrome (ortholog) NW_004955477 9970199 10005562 + 102024797 AGCD01055688;GBDF01045980;XM_005402041;XM_013503095;XM_013503096;XM_013503097;XM_013503098;XM_013503099;XM_013503100 XP_005402098;XP_013358549;XP_013358550;XP_013358551;XP_013358552;XP_013358553;XP_013358554 MODEL 8873335 protein-coding Dipk1b divergent protein kinase domain 1B ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog) NW_004955513 4120061 4123964 - 102025494 AGCD01066920;GBBH01186691;GBDJ01316687;XM_005408647 XP_005408704 MODEL 10247340 ncrna LOC106148726 uncharacterized LOC106148726 NW_004955403 13892600 13919056 - 106148726 AGCD01002015;AGCD01002016;GBDF01275066;XR_001234389 MODEL 8831643 protein-coding LOC102022770 olfactory receptor 19-like NW_004955626 86184 87113 - 102022770 AGCD01077466;XM_005415024 XP_005415081 MODEL 8890071 protein-coding Tgfbr2 transforming growth factor beta receptor 2 ENCODES a protein that exhibits glycosaminoglycan binding (ortholog); kinase activator activity (ortholog); mitogen-activated protein kinase kinase kinase binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); animal organ regeneration (ortholog); aorta morphogenesis (ortholog); PARTICIPATES IN altered transforming growth factor-beta Smad dependent signaling pathway; colorectal cancer pathway; glypican signaling pathway; ASSOCIATED WITH aortic aneurysm (ortholog); arteriosclerosis (ortholog); bone disease (ortholog); FOUND IN caveola (ortholog); cell surface (ortholog); external side of plasma membrane (ortholog) NW_004955430 21919338 21999688 + 102022415 AGCD01029780;AGCD01029781;GBDI01069771;XM_005387519 XP_005387576 MODEL 39133476 snrna U2 U2 spliceosomal RNA 9002072 protein-coding LOC102027673 2-oxoglutarate dehydrogenase, mitochondrial-like NW_004955529 1327579 1355065 - 102027673 AGCD01069680;AGCD01069681;XM_013507525 XP_013362979 MODEL 8930518 protein-coding Vtcn1 V-set domain containing T cell activation inhibitor 1 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of T cell activation (ortholog); negative regulation of T cell proliferation (ortholog); FOUND IN external side of plasma membrane (ortholog) NW_004955435 20250236 20332329 - 102007464 AGCD01033448;AGCD01033449;AGCD01033450;GBCE01157043;XM_005389056;XM_013516491;XM_013516492;XM_013516493;XM_013516494 XP_005389113;XP_013371945;XP_013371946;XP_013371947;XP_013371948 MODEL 8709873 protein-coding Borcs7 BLOC-1 related complex subunit 7 INVOLVED IN axon development (ortholog); lysosome localization (ortholog); motor behavior (ortholog); ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); hereditary spastic paraplegia (ortholog); neuroaxonal dystrophy (ortholog); FOUND IN BORC complex (ortholog); lysosome (ortholog) NW_004955485 7605277 7615924 - 102010267 AGCD01058665;GBCB01024707;XM_005403820 XP_005403877 MODEL 8938081 protein-coding Slc22a12 solute carrier family 22 member 12 ENCODES a protein that exhibits PDZ domain binding (ortholog); urate transmembrane transporter activity (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); renal urate salt excretion (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); Congenital Abnormalities (ortholog); diabetes mellitus (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); membrane (ortholog) NW_004955422 20555458 20561818 - 102007566 AGCD01023083;GBCQ01008135;XM_005384586;XM_005384588;XM_005384590 XP_005384643;XP_005384645;XP_005384647 MODEL 39133477 snrna U2 U2 spliceosomal RNA 9052303 protein-coding LOC102022185 olfactory receptor 51H1-like NW_004955414 20166170 20167120 + 102022185 AGCD01015358;XM_013511716 XP_013367170 MODEL 8755824 protein-coding LOC102026211 mas-related G-protein coupled receptor member A-like NW_004955414 33474387 33495462 - 102026211 AGCD01015809;GBDJ01373226;XM_005380428;XM_005380429;XM_013511706 XP_005380485;XP_005380486;XP_013367160 MODEL 8932570 ncrna LOC102027680 uncharacterized LOC102027680 NW_004955439 9524812 9528438 - 102027680 AGCD01035840;GBCB01086529;XR_261975 MODEL 8918055 protein-coding Borcs8 BLOC-1 related complex subunit 8 INVOLVED IN heart development (ortholog); ASSOCIATED WITH Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); NEURODEGENERATION, INFANTILE-ONSET, WITH OPTIC ATROPHY AND BRAIN ABNORMALITIES (ortholog); progressive myoclonus epilepsy 8 (ortholog); FOUND IN BORC complex (ortholog) NW_004955524 2641907 2646275 + 102008656 AGCD01068827;GBDF01046628;XM_005409618;XM_005409619;XM_013507215 XP_005409675;XP_005409676;XP_013362669 MODEL 39133478 snrna U2 U2 spliceosomal RNA 39132593 snrna U6 U6 spliceosomal RNA 10193134 protein-coding LOC106147261 uncharacterized LOC106147261 NW_004955536 2021807 2036325 - 106147261 AGCD01070777;GBDF01211708;XM_013507723 XP_013363177 MODEL 10075843 ncrna LOC106149683 uncharacterized LOC106149683 NW_004955452 15538983 15541086 + 106149683 AGCD01044487;GBDF01146323;XR_001236005 MODEL 10158854 ncrna LOC106149238 uncharacterized LOC106149238 NW_004955441 11998097 11999475 - 106149238 AGCD01037116;GBCE01036095;XR_001235290 MODEL 8845720 protein-coding Ift88 intraflagellar transport 88 ENCODES a protein that exhibits kinesin binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); brain development (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); autosomal dominant nonsyndromic deafness 3B (ortholog); autosomal recessive nonsyndromic deafness 1A (ortholog); FOUND IN acrosomal membrane (ortholog); axonemal basal plate (ortholog); axoneme (ortholog) NW_004955497 1338959 1454788 + 102011216 AGCD01062457;AGCD01062458;AGCD01062459;AGCD01062460;GBCE01023354;XM_005406308;XM_005406309;XM_005406310;XM_013505482;XM_013505483;XM_013505484;XM_013505486;XR_264192 XP_005406365;XP_005406366;XP_005406367;XP_013360936;XP_013360937;XP_013360938;XP_013360940 MODEL 8801797 ncrna LOC102028902 uncharacterized LOC102028902 NW_004955550 1667159 1671779 - 102028902 AGCD01072583;GBDF01011110;XR_264918 MODEL 39133479 snrna U2 U2 spliceosomal RNA 8855819 protein-coding Lcnl1 lipocalin like 1 ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog) NW_004955513 5012879 5015482 + 102028323 AGCD01066950;GBDI01208694;XM_005415259 XP_005415316 MODEL 8962195 ncrna LOC102020564 uncharacterized LOC102020564 NW_004955478 2028321 2032929 - 102020564 AGCD01055783;GBDF01248867;XR_263685 MODEL 8828914 protein-coding Nfib nuclear factor I B ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN anterior commissure morphogenesis (ortholog); brain development (ortholog); cell differentiation involved in salivary gland development (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); autism spectrum disorder (ortholog); genetic disease (ortholog); FOUND IN cerebellar mossy fiber (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955434 17192188 17603503 - 102016086 AGCD01032534;AGCD01032535;AGCD01032536;AGCD01032537;GBDI01021189;XM_005388694;XM_005388695;XM_005388696;XM_013516299;XM_013516300;XM_013516301;XM_013516302;XM_013516303 XP_005388751;XP_005388752;XP_005388753;XP_013371753;XP_013371754;XP_013371755;XP_013371756;XP_013371757 MODEL 10184955 ncrna LOC106147262 uncharacterized LOC106147262 NW_004955536 1047281 1048716 - 106147262 AGCD01070747;GBDF01160537;XR_001232060 MODEL 8954657 protein-coding Pradc1 protease associated domain containing 1 ASSOCIATED WITH Alstrom syndrome (ortholog); congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); FOUND IN extracellular region (ortholog) NW_004955424 12403090 12408055 + 102017791 AGCD01024604;GBDF01155799;XM_005385569 XP_005385626 MODEL 9042856 pseudo LOC102028904 uncharacterized LOC102028904 NW_004955552 2513686 2521865 - 102028904 AGCD01072819 MODEL 8972903 protein-coding Ttbk1 tau tubulin kinase 1 ENCODES a protein that exhibits protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN learning or memory (ortholog); negative regulation of gene expression (ortholog); peptidyl-serine phosphorylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Childhood Schizophrenia (ortholog); infantile Refsum disease (ortholog); FOUND IN cytosol (ortholog); neuronal cell body (ortholog); nucleoplasm (ortholog) NW_004955437 9161880 9195098 + 102005176 AGCD01034521;AGCD01034522;GBDF01162981;XM_005389756;XM_005389758;XM_013517133;XM_013517134;XM_013517135;XM_013517136 XP_005389813;XP_005389815;XP_013372587;XP_013372588;XP_013372589;XP_013372590 MODEL 9046193 protein-coding Ythdc2 YTH N6-methyladenosine RNA binding protein C2 ENCODES a protein that exhibits 3'-5' RNA helicase activity (ortholog); ATP-dependent activity, acting on RNA (ortholog); N6-methyladenosine-containing RNA reader activity (ortholog); INVOLVED IN germline cell cycle switching, mitotic to meiotic cell cycle (ortholog); oocyte development (ortholog); positive regulation by host of viral genome replication (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); ribonucleoprotein granule (ortholog) NW_004955408 33380822 33448188 + 102020212 AGCD01008868;AGCD01008869;GBBH01177506;XM_005376515 XP_005376572 MODEL 9049273 pseudo LOC102016253 E3 ubiquitin-protein ligase makorin-1 pseudogene NW_004955412 15316407 15318427 - 102016253 AGCD01012870 MODEL 8844839 protein-coding Znf592 zinc finger protein 592 ENCODES a protein that exhibits insulin receptor substrate binding (ortholog); PH domain binding (ortholog); INVOLVED IN negative regulation of insulin receptor signaling pathway (ortholog); regulation of peptidyl-tyrosine phosphorylation (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955416 14328250 14365346 - 102011001 AGCD01017253;AGCD01017254;GBDJ01311596;XM_005381492 XP_005381549 MODEL 10370807 protein-coding LOC106150201 uncharacterized LOC106150201 NW_004955468 2198060 2203631 + 106150201 AGCD01051801;GBDF01183696;XM_013522289 XP_013377743 MODEL 8710300 protein-coding Vti1a vesicle transport through interaction with t-SNAREs 1A ENCODES a protein that exhibits SNAP receptor activity (ortholog); INVOLVED IN autophagy (ortholog); endocytic recycling (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Colorectal Neoplasms (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN autophagosome (ortholog); clathrin-coated vesicle (ortholog); Golgi apparatus (ortholog) NW_004955431 17542605 17910809 + 102029547 AGCD01030409;AGCD01030410;AGCD01030411;AGCD01030412;AGCD01030413;AGCD01030414;AGCD01030415;AGCD01030416;AGCD01030417;AGCD01030418;GBDF01220882;XM_005387765;XM_005387768;XM_013515814;XM_013515815;XM_013515816;XM_013515818;XM_013515819 XP_005387822;XP_005387825;XP_013371268;XP_013371269;XP_013371270;XP_013371272;XP_013371273 MODEL 8782336 protein-coding LOC102023831 olfactory receptor 5M10-like NW_004955511 1726691 1727638 - 102023831 AGCD01066377;XM_005408240 XP_005408297 MODEL 8866145 protein-coding Esrrb estrogen related receptor beta ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cell dedifferentiation (ortholog); cell population proliferation (ortholog); embryonic placenta development (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 35 (ortholog); dilated cardiomyopathy (ortholog); FOUND IN condensed chromosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955438 365375 534086 + 102029663 AGCD01034946;AGCD01034947;AGCD01034948;AGCD01034949;AGCD01034950;AGCD01034951;GBCQ01188054;XM_005390154;XM_013517291;XM_013517292 XP_005390211;XP_013372745;XP_013372746 MODEL 8831190 protein-coding Lcorl ligand dependent nuclear receptor corepressor like ENCODES a protein that exhibits histone methyltransferase binding (ortholog); INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Birth Weight (ortholog) NW_004955480 6241460 6398022 + 102004706 AGCD01056683;AGCD01056684;GBDF01159377;XM_005402490;XM_005402491;XM_013503311;XM_013503312;XM_013503313;XM_013503314;XM_013503315;XM_013503316;XM_013503317;XM_013503318 XP_005402547;XP_005402548;XP_013358765;XP_013358766;XP_013358767;XP_013358768;XP_013358769;XP_013358770;XP_013358771;XP_013358772 MODEL 8940556 pseudo LOC102026212 40S ribosomal protein S2 pseudogene NW_004955473 6794845 6795524 - 102026212 AGCD01054005 MODEL 8961721 ncrna LOC102004621 uncharacterized LOC102004621 NW_004955505 1555708 1583604 - 102004621 AGCD01064974;AGCD01064975;GBDF01014944;XR_001231574;XR_264301 MODEL 8802097 protein-coding Krt1 keratin 1 ENCODES a protein that exhibits carbohydrate binding (ortholog); protein heterodimerization activity (ortholog); structural constituent of skin epidermis (ortholog); INVOLVED IN complement activation, lectin pathway (ortholog); establishment of skin barrier (ortholog); negative regulation of inflammatory response (ortholog); ASSOCIATED WITH Annular Epidermolytic Ichthyosis (ortholog); Annular Epidermolytic Ichthyosis 1 (ortholog); Annular Epidermolytic Ichthyosis 2 (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); keratin filament (ortholog) NW_004955458 25193 29282 - 102011843 AGCD01047104;AGCD01047105;GBCB01074334;XM_013521011 XP_013376465 MODEL 10138664 protein-coding LOC106150202 ESX-1 secretion-associated protein EspK-like NW_004955468 3133673 3135157 + 106150202 AGCD01051856;GBDF01262998;XM_013522292 XP_013377746 MODEL 8875989 pseudo LOC102023833 ubiquitin carboxyl-terminal hydrolase 1-like NW_004955431 15686481 15689111 - 102023833 AGCD01030364 MODEL 8992449 protein-coding Vti1b vesicle transport through interaction with t-SNAREs 1B ENCODES a protein that exhibits chloride channel inhibitor activity (ortholog); SNARE binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); regulation of protein localization to plasma membrane (ortholog); ASSOCIATED WITH Leber congenital amaurosis 13 (ortholog); FOUND IN early endosome membrane (ortholog); Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955466 2527750 2549599 + 102010982 AGCD01050743;AGCD01050744;GBDF01002517;XM_005399067;XM_013521894 XP_005399124;XP_013377348 MODEL 8733104 protein-coding Siah3 siah E3 ubiquitin protein ligase family member 3 INVOLVED IN negative regulation of protein targeting to mitochondrion (ortholog); regulation of protein stability (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955518 3473120 3539086 - 102016738 AGCD01067804;AGCD01067805;GBDF01111139;XM_005409091;XM_013506955;XR_001231838 XP_005409148;XP_013362409 MODEL 9002152 ncrna LOC102004322 uncharacterized LOC102004322 NW_004955438 21001399 21004768 - 102004322 AGCD01035528;GBDJ01373094;XR_001235152 MODEL 8784127 protein-coding LOC102005024 mucosal pentraxin-like NW_004955468 11064309 11067510 + 102005024 AGCD01052113;XM_005400166 XP_005400223 MODEL 10160299 ncrna LOC106149239 uncharacterized LOC106149239 NW_004955441 10255342 10261006 - 106149239 AGCD01037082;GBCE01107026;XR_001235291;XR_001235292;XR_001235293 MODEL 8974264 protein-coding Krt10 keratin 10 ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); protein heterodimerization activity (ortholog); structural constituent of skin epidermis (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); epidermis development (ortholog); intermediate filament organization (ortholog); ASSOCIATED WITH Annular Epidermolytic Ichthyosis (ortholog); Annular Epidermolytic Ichthyosis 1 (ortholog); Arsenic Poisoning (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); keratin filament (ortholog) NW_004955451 15269861 15274351 - 102019233 AGCD01043604;GBCC01000847;XM_005394374;XM_013519176 XP_005394431;XP_013374630 MODEL 8983740 protein-coding Vtn vitronectin ENCODES a protein that exhibits collagen binding (ortholog); extracellular matrix binding (ortholog); heparin binding (ortholog); INVOLVED IN cell adhesion mediated by integrin (ortholog); cell migration (ortholog); cell-matrix adhesion (ortholog); PARTICIPATES IN forkhead class A signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Alveolar Bone Loss (ortholog); Churg-Strauss syndrome (ortholog); coronary artery disease (ortholog); FOUND IN basement membrane (ortholog); collagen-containing extracellular matrix (ortholog); endoplasmic reticulum (ortholog) NW_004955481 4765078 4768027 + 102005709 AGCD01056951;GBDK01228997;XM_005402757;XM_005402758 XP_005402814;XP_005402815 MODEL 8785708 protein-coding Nfic nuclear factor I C ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); odontogenesis of dentin-containing tooth (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Prostatic Neoplasms (ortholog); RASopathy (ortholog); FOUND IN fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955495 5095219 5139561 - 102010917 AGCD01061974;AGCD01061975;AGCD01061976;GBBH01031377;GBCE01001651;XM_013505235 XP_013360689 MODEL 8915738 ncrna LOC102023136 uncharacterized LOC102023136 NW_004955413 23428407 23438675 - 102023136 AGCD01014331;GBDK01268729;XR_001233012;XR_001233013 MODEL 8828638 pseudo LOC102027233 breast cancer metastasis-suppressor 1-like protein pseudogene NW_004955543 3414117 3422436 + 102027233 AGCD01071688 MODEL 8834448 protein-coding Praf2 PRA1 domain family member 2 ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955543 594662 597695 - 102007939 AGCD01071593;GBDF01249477;XM_005411321 XP_005411378 MODEL 8887629 protein-coding Tbc1d12 TBC1 domain family member 12 NW_004955507 887898 990885 + 102028561 AGCD01065489;AGCD01065490;AGCD01065491;AGCD01065492;AGCD01065493;AGCD01065494;AGCD01065495;AGCD01065496;AGCD01065497;AGCD01065498;GBCE01013692;GBDI01311819;XM_013506205 XP_013361659 MODEL 8881530 protein-coding LOC102022194 olfactory receptor 1J2-like NW_004955419 5338113 5339093 + 102022194 AGCD01019802;XM_005382920 XP_005382977 MODEL 8960181 protein-coding Mlx MAX dimerization protein MLX ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); nucleocytoplasmic transport (ortholog); ASSOCIATED WITH mucopolysaccharidosis type IIIB (ortholog); oligoasthenoteratozoospermia (ortholog); ovarian dysgenesis 3 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear membrane (ortholog) NW_004955451 16460737 16464529 + 102021299 AGCD01043679;GBDK01093839;XM_013519147 XP_013374601 MODEL 8774819 pseudo LOC102024799 transketolase-like NW_004955418 20497455 20499483 + 102024799 AGCD01019228 MODEL 8894317 protein-coding Lrrc28 leucine rich repeat containing 28 ASSOCIATED WITH chromosome 15q26-qter deletion syndrome (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955416 26668712 26786945 + 102004277 AGCD01017602;AGCD01017603;AGCD01017604;AGCD01017605;GBDF01002081;XM_005381627;XM_005381628;XM_013512542 XP_005381684;XP_005381685;XP_013367996 MODEL 8868824 protein-coding Uts2r urotensin 2 receptor ENCODES a protein that exhibits urotensin II receptor activity (ortholog); INVOLVED IN negative regulation of blood pressure (ortholog); negative regulation of glomerular filtration (ortholog); negative regulation of urine volume (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); cardiomyopathy (ortholog); Diabetic Nephropathies (ortholog); FOUND IN early endosome (ortholog); recycling endosome (ortholog) NW_004955506 756859 761891 - 102010604 AGCD01065235;GBDJ01376332;XM_005407203;XM_013505962 XP_005407260;XP_013361416 MODEL 8774363 protein-coding Iftap intraflagellar transport associated protein ENCODES a protein that exhibits intraciliary transport particle A binding (ortholog); INVOLVED IN acrosome reaction (ortholog); fertilization (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH combined cellular and humoral immune defects with granulomas (ortholog); COVID-19 (ortholog); histiocytic sarcoma (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); cytosol (ortholog) NW_004955422 9804012 9867580 - 102003882 AGCD01022721;AGCD01022722;AGCD01022723;GBCE01133930;XM_005384101;XM_005384102 XP_005384158;XP_005384159 MODEL 8958612 protein-coding LOC102017282 zinc finger protein 64 homolog NW_004955445 6571357 6591995 + 102017282 AGCD01039489;AGCD01039490;GBDF01112028;XM_005392289;XM_013518327;XM_013518328 XP_005392346;XP_013373781;XP_013373782 MODEL 8854438 protein-coding Scara3 scavenger receptor class A member 3 INVOLVED IN toll-like receptor 3 signaling pathway (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955403 50185857 50223340 + 102007616 AGCD01002960;GBDF01127369;XM_013514256;XM_013514262;XM_013514272;XM_013514277 XP_013369710;XP_013369716;XP_013369726;XP_013369731 MODEL 8860588 protein-coding Nop9 NOP9 nucleolar protein ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Breast Neoplasms (ortholog); lysinuric protein intolerance (ortholog) NW_004955409 35996918 36002460 - 102003738 AGCD01010438;GBCE01116763;XM_005377017;XM_013510398 XP_005377074;XP_013365852 MODEL 8748668 protein-coding Nsmce2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase ENCODES a protein that exhibits SUMO transferase activity (ortholog); INVOLVED IN cellular senescence (ortholog); double-strand break repair via homologous recombination (ortholog); double-strand break repair via nonhomologous end joining (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); Developmental Disabilities (ortholog); hereditary spastic paraplegia 8 (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955461 199356 451716 + 102029718 AGCD01048792;AGCD01048793;AGCD01048794;AGCD01048795;GBDF01124848;XM_005397986;XM_013521309 XP_005398043;XP_013376763 MODEL 8850410 protein-coding Tgfbr3 transforming growth factor beta receptor 3 ENCODES a protein that exhibits activin binding (ortholog); BMP binding (ortholog); coreceptor activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); apoptotic process involved in morphogenesis (ortholog); blastocyst development (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH connective tissue disease (ortholog); COVID-19 (ortholog); Diamond-Blackfan anemia (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955423 2573851 2765353 + 102027417 AGCD01023482;AGCD01023483;AGCD01023484;AGCD01023485;GBDK01071854;XM_005385062;XM_005385063 XP_005385119;XP_005385120 MODEL 8764563 pseudo LOC102020569 arylacetamide deacetylase-like 4 pseudogene NW_004955486 790572 791361 + 102020569 AGCD01058889 MODEL 8736223 pseudo LOC102004327 nuclear inhibitor of protein phosphatase 1 pseudogene NW_004955548 1082609 1083641 + 102004327 AGCD01072356 MODEL 8841209 protein-coding Ctxn3 cortexin 3 ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955415 731895 741765 + 102030412 AGCD01015853;XM_005380546 XP_005380603 MODEL 8771950 protein-coding Sidt1 SID1 transmembrane family member 1 ENCODES a protein that exhibits cholesterol binding (ortholog); double-stranded RNA binding (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog) NW_004955427 13649216 13747983 + 102021028 AGCD01027254;AGCD01027255;AGCD01027256;AGCD01027257;GBBH01198041;GBCE01010856;XM_005386616 XP_005386673 MODEL 8854976 protein-coding LOC102027285 histone H2A.J ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog) NW_004955413 11520479 11521163 + 102027285 AGCD01013964;GBCE01028514;XM_005378998 XP_005379055 MODEL 9034067 protein-coding LOC102020573 chromosome unknown open reading frame, human C3orf22 ASSOCIATED WITH alkaptonuria (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN cytoplasm (ortholog) NW_004955421 21945527 21949229 + 102020573 AGCD01022125;GBDF01046381;XM_013513638 XP_013369092 MODEL 39131522 protein-coding DIPK1C divergent protein kinase domain 1C 39132595 snrna U6 U6 spliceosomal RNA 8731524 protein-coding Znf593 zinc finger protein 593 ENCODES a protein that exhibits preribosome binding (ortholog); zinc ion binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); Disease Progression (ortholog); retinitis pigmentosa 59 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955452 5613210 5614161 + 102013468 AGCD01044050;GBDF01193982;XM_005394844 XP_005394901 MODEL 8888524 protein-coding Rpain RPA interacting protein INVOLVED IN protein import into nucleus (ortholog); response to UV (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 25 (ortholog); FOUND IN cytoplasm (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955467 10780818 10788137 + 102027504 AGCD01051583;GBDF01053986;XM_005399644 XP_005399701 MODEL 9040756 protein-coding LOC102027234 uncharacterized LOC102027234 NW_004955439 17547905 17567699 + 102027234 AGCD01036041;GBDF01054417;XM_013517306 XP_013372760 MODEL 8922235 protein-coding LOC102012918 atherin-like NW_004955452 3351568 3354575 - 102012918 AGCD01043921;GBDF01123090;XM_005394752;XM_013519519 XP_005394809;XP_013374973 MODEL 9014062 pseudo LOC102020579 heat shock cognate 71 kDa protein pseudogene NW_004955423 15738116 15740017 + 102020579 AGCD01023813 MODEL 8849501 protein-coding LOC102026215 interferon-induced transmembrane protein 3-like NW_004955476 11689642 11690838 - 102026215 AGCD01055472;GBCE01000009;XM_005401874 XP_005401931 MODEL 39132718 snrna U6 U6 spliceosomal RNA 39132596 snrna U6 U6 spliceosomal RNA 8748262 protein-coding Dipk1c divergent protein kinase domain 1C ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955402 57878727 57899315 - 102013364 AGCD01001513;GBCE01121416;GBDJ01269128;XM_005373180 XP_005373237 MODEL 8932880 pseudo LOC102024800 olfactory receptor 50-like NW_004955419 5607509 5608706 - 102024800 AGCD01019828 MODEL 8962167 protein-coding Tnpo2 transportin 2 INVOLVED IN negative regulation of muscle cell differentiation (ortholog); protein import into nucleus (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog) NW_004955415 31807701 31826938 - 102019909 AGCD01016698;GBDJ01136647;XM_005381021;XM_013512350;XM_013512351;XM_013512352 XP_005381078;XP_013367804;XP_013367805;XP_013367806 MODEL 39132597 snrna U6 U6 spliceosomal RNA 8967821 protein-coding LOC102026218 putative olfactory receptor 3A4 NW_004955481 93480 94415 - 102026218 AGCD01056780;XM_013503378 XP_013358832 MODEL 8799736 pseudo LOC102004331 N-formyl peptide receptor 2-like NW_004955558 710555 711378 - 102004331 AGCD01073385 MODEL 8941768 protein-coding Ythdf1 YTH N6-methyladenosine RNA binding protein F1 ENCODES a protein that exhibits N6-methyladenosine-containing RNA reader activity (ortholog); ribosome binding (ortholog); INVOLVED IN learning (ortholog); memory (ortholog); mRNA destabilization (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); P-body (ortholog) NW_004955528 935182 951722 + 102018527 AGCD01069548;AGCD01069549;GBDF01163201;XM_005409994;XM_005409995 XP_005410051;XP_005410052 MODEL 8804517 protein-coding Nos1 nitric oxide synthase 1 ENCODES a protein that exhibits ATPase binding (ortholog); cadmium ion binding (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN arginine catabolic process (ortholog); behavioral response to cocaine (ortholog); calcium ion transport (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway; ASSOCIATED WITH achalasia (ortholog); acute kidney failure (ortholog); acute necrotizing pancreatitis (ortholog); FOUND IN neuron projection terminus; perikaryon; azurophil granule (ortholog) NW_004955455 13797557 13978402 + 102022046 AGCD01046075;AGCD01046076;AGCD01046077;AGCD01046078;AGCD01046079;AGCD01046080;GBCB01005658;XM_005396543;XM_013520392;XM_013520393;XM_013520394 XP_005396600;XP_013375846;XP_013375847;XP_013375848 MODEL 8921970 protein-coding Selenof selenoprotein F ENCODES a protein that exhibits selenium binding (ortholog); thioredoxin peroxidase activity (ortholog); INVOLVED IN response to lipopolysaccharide (ortholog); sperm DNA condensation (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog) NW_004955423 7253980 7285442 + 102019820 AGCD01023596;GBDF01050322;XM_005385122 XP_005385179 MODEL 10135413 ncrna LOC106149533 uncharacterized LOC106149533 NW_004955448 4661991 4716792 + 106149533 AGCD01041350;AGCD01041351;XR_001235787 MODEL 8840232 ncrna LOC102021851 uncharacterized LOC102021851 NW_004955457 14849296 14857146 - 102021851 AGCD01047085;GBDJ01370680;XR_262954 MODEL 8893506 protein-coding LOC102027287 olfactory receptor 10Z1 NW_004955468 10458122 10459063 + 102027287 AGCD01052084;XM_005400155 XP_005400212 MODEL 8902258 protein-coding Rpap1 RNA polymerase II associated protein 1 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog) NW_004955416 8322239 8348331 - 102008094 AGCD01017043;AGCD01017044;GBBH01051570;XM_005381286 XP_005381343 MODEL 8786469 protein-coding Prag1 PEAK1 related, kinase-activating pseudokinase 1 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); INVOLVED IN cell migration (ortholog); negative regulation of neuron projection development (ortholog); positive regulation of Rho protein signal transduction (ortholog); FOUND IN cytoplasm (ortholog); focal adhesion (ortholog); nucleus (ortholog) NW_004955463 4397246 4446696 - 102016357 AGCD01049605;GBDI01181338;GBDJ01076008;XM_005398353 XP_005398410 MODEL 8881077 ncrna LOC102003500 uncharacterized LOC102003500 NW_004955575 638720 645615 + 102003500 AGCD01075227;GBDK01352758;XR_265069 MODEL 9049169 protein-coding Selenoi selenoprotein I ENCODES a protein that exhibits ethanolaminephosphotransferase activity (ortholog); INVOLVED IN ether lipid biosynthetic process (ortholog); myelination (ortholog); phosphatidylethanolamine biosynthetic process (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 81 (ortholog); mitochondrial trifunctional protein deficiency (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955469 8369499 8410628 + 102011299 AGCD01052465;AGCD01052466;GBDF01041114;XM_005400425 XP_005400482 MODEL 9041499 pseudo LOC102027245 tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like NW_004955447 14470943 14473008 - 102027245 AGCD01041006 MODEL 10136032 ncrna LOC106149534 uncharacterized LOC106149534 NW_004955448 4708718 4719507 - 106149534 AGCD01041351;XR_001235788 MODEL 9008032 protein-coding Igbp1 immunoglobulin binding protein 1 ENCODES a protein that exhibits enzyme binding (ortholog); mitogen-activated protein kinase kinase binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN intracellular signal transduction (ortholog); negative regulation of apoptotic signaling pathway (ortholog); negative regulation of stress-activated MAPK cascade (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); microtubule (ortholog) NW_004955475 9671162 9694926 + 102020332 AGCD01055069;GBDK01196227;XM_005401610;XM_005401612;XM_005401613;XM_013502864;XM_013502865 XP_005401667;XP_005401669;XP_005401670;XP_013358318;XP_013358319 MODEL 8982202 pseudo LOC102003512 60S ribosomal protein L17-like NW_004955405 31689835 31691569 + 102003512 AGCD01005302 MODEL 39131569 protein-coding CTXND1 cortexin domain containing 1 8705403 protein-coding Rpap2 RNA polymerase II associated protein 2 ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); RNA polymerase II CTD heptapeptide repeat phosphatase activity (ortholog); INVOLVED IN PERK-mediated unfolded protein response (ortholog); snRNA transcription (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); severe congenital neutropenia 2 (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955423 2062163 2195351 - 102022401 AGCD01023467;AGCD01023468;AGCD01023469;AGCD01023470;GBDF01220283;XM_005385045;XM_013514463;XM_013514464;XM_013514465;XM_013514466;XM_013514467;XM_013514468;XM_013514469;XR_001234092;XR_001234093;XR_001234094 XP_005385102;XP_013369917;XP_013369918;XP_013369919;XP_013369920;XP_013369921;XP_013369922;XP_013369923 MODEL 40834587 protein-coding LCORL ligand dependent nuclear receptor corepressor like 10171700 ncrna LOC106148727 uncharacterized LOC106148727 NW_004955427 12218583 12228416 - 106148727 AGCD01027205;GBCQ01076620;XR_001234390 MODEL 8793424 protein-coding Gpx8 glutathione peroxidase 8 (putative) ENCODES a protein that exhibits peroxidase activity (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955446 12498276 12504890 - 102019865 AGCD01040235;GBCE01042647;XM_005392706;XM_005392707;XM_013518459 XP_005392763;XP_005392764;XP_013373913 MODEL 8963702 protein-coding LOC102022771 keratin-associated protein 2-1-like NW_004955451 15461320 15485402 - 102022771 AGCD01043609;AGCD01043610;AGCD01043611;GBDF01041876;XM_005394382;XM_005394383;XM_013519178 XP_005394439;XP_005394440;XP_013374632 MODEL 39133480 snrna U2 U2 spliceosomal RNA 8839720 protein-coding Igdcc3 immunoglobulin superfamily DCC subclass member 3 INVOLVED IN neuromuscular process controlling balance (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); nemaline myopathy 6 (ortholog) NW_004955450 10087900 10121671 + 102007720 AGCD01042606;AGCD01042607;GBCE01023302;XM_013519046 XP_013374500 MODEL 8724412 protein-coding Cubn cubilin ENCODES a protein that exhibits cargo receptor activity (ortholog); hemoglobin binding (ortholog); identical protein binding (ortholog); INVOLVED IN cobalamin catabolic process (ortholog); cobalamin metabolic process (ortholog); cobalamin transport (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); autism spectrum disorder (ortholog); Chronic Benign Proteinuria (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); brush border (ortholog) NW_004955429 10789674 11038297 + 102028666 AGCD01028680;AGCD01028681;AGCD01028682;AGCD01028683;AGCD01028684;AGCD01028685;GBCQ01008980;XM_005386965 XP_005387022 MODEL 10117650 ncrna LOC106147263 uncharacterized LOC106147263 NW_004955536 376407 380041 - 106147263 AGCD01070725;GBCB01130040;XR_001232061 MODEL 8843029 protein-coding Nos2 nitric oxide synthase 2 ENCODES a protein that exhibits actin binding (ortholog); arginine binding (ortholog); beta-catenin binding (ortholog); INVOLVED IN arginine catabolic process (ortholog); blood vessel remodeling (ortholog); cellular response to cytokine stimulus (ortholog); PARTICIPATES IN endothelin signaling pathway; hypoxia inducible factor pathway; interleukin-12 signaling pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acute Hepatitis (ortholog); acute kidney failure (ortholog); FOUND IN cortical cytoskeleton (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955481 5197957 5232406 + 102010483 AGCD01056965;GBDK01358958;XM_005402773;XM_005402774;XM_013503498 XP_005402830;XP_005402831;XP_013358952 MODEL 8837009 protein-coding LOC102020582 olfactory receptor 7A17-like NW_004955495 8348920 8349873 + 102020582 AGCD01062200;XM_005406178 XP_005406235 MODEL 10115508 protein-coding LOC106149240 uncharacterized LOC106149240 NW_004955441 13737303 13749751 - 106149240 AGCD01037160;XM_013517513 XP_013372967 MODEL 8871428 pseudo LOC102017290 general transcription factor IIF subunit 2 pseudogene NW_004955402 9078429 9085971 + 102017290 AGCD01000204 MODEL 8778075 ncrna LOC102027686 uncharacterized LOC102027686 NW_004955444 8286148 8297630 - 102027686 AGCD01038932;GBDK01114535;XR_262251 MODEL 8705077 protein-coding Scara5 scavenger receptor class A member 5 ENCODES a protein that exhibits ferritin receptor activity (ortholog); INVOLVED IN cellular response to heat (ortholog); endocytosis (ortholog); intracellular iron ion homeostasis (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955403 50386212 50486335 - 102009566 AGCD01002966;GBDJ01137248;XM_005373759 XP_005373816 MODEL 8755931 protein-coding Nsmce3 NSE3 homolog, SMC5-SMC6 complex component ENCODES a protein that exhibits protein dimerization activity (ortholog); INVOLVED IN cellular response to hydroxyurea (ortholog); cellular response to radiation (ortholog); cellular response to UV (ortholog); ASSOCIATED WITH Angelman syndrome (ortholog); autistic disorder (ortholog); chromosome 15q11.2 deletion syndrome (ortholog); FOUND IN Smc5-Smc6 complex (ortholog) NW_004955416 29261347 29262696 + 102029622 AGCD01017651;GBBH01119696;GBCB01087478;XM_013512660 XP_013368114 MODEL 8849622 protein-coding Selenok selenoprotein K ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN calcium ion transport (ortholog); establishment of localization in cell (ortholog); intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955430 3870925 3876636 - 102005283 AGCD01029230;GBDK01011326;XM_013515674 XP_013371128 MODEL 10291900 ncrna LOC106147264 uncharacterized LOC106147264 NW_004955536 3026086 3027892 + 106147264 AGCD01070806;GBDK01171519;XR_001232065 MODEL 8936073 protein-coding LOC102027246 cytochrome P450 2G1-like NW_004955578 189244 198423 + 102027246 AGCD01075465;GBBH01088797;XM_005414000 XP_005414057 MODEL 8764333 protein-coding Pram1 PML-RARA regulated adaptor molecule 1 ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN integrin-mediated signaling pathway (ortholog); regulation of neutrophil degranulation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); mucolipidosis type IV (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955563 924365 933198 + 102011059 AGCD01074097;GBDJ01338971;XM_005413115;XM_005413116;XM_005413117;XM_005413118 XP_005413172;XP_005413173;XP_005413174;XP_005413175 MODEL 8897600 pseudo LOC102027687 60S ribosomal protein L31-like NW_004955445 1148929 1149447 + 102027687 AGCD01039330 MODEL 8819983 protein-coding Mgll monoglyceride lipase ENCODES a protein that exhibits hydrolase activity (ortholog); monoacylglycerol lipase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN acylglycerol catabolic process (ortholog); arachidonate metabolic process (ortholog); long-term synaptic depression (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); amenorrhea (ortholog); immunodeficiency 21 (ortholog); FOUND IN axon (ortholog); cerebellar climbing fiber to Purkinje cell synapse (ortholog); cytosol (ortholog) NW_004955429 15760159 15960774 + 102027771 AGCD01028817;AGCD01028818;AGCD01028819;AGCD01028820;AGCD01028821;AGCD01028822;AGCD01028823;GBDF01005764;XM_005387048;XM_005387049;XM_005387050 XP_005387105;XP_005387106;XP_005387107 MODEL 155598684 protein-coding ZNF593OS ZNF593 opposite strand 8721634 protein-coding Selenom selenoprotein M INVOLVED IN adipose tissue development (ortholog); corticosterone secretion (ortholog); hormone metabolic process (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955455 5294317 5303621 - 102004353 AGCD01045720;GBDF01089321;XM_005396296;XM_013520299 XP_005396353;XP_013375753 MODEL 8997876 ncrna LOC102005026 uncharacterized LOC102005026 NW_004955414 4244433 4270227 + 102005026 AGCD01014860;GBDF01127962;XR_001233072;XR_001233073;XR_260151 MODEL 8979251 protein-coding Ubash3a ubiquitin associated and SH3 domain containing A INVOLVED IN collagen-activated signaling pathway (ortholog); negative regulation of T cell receptor signaling pathway (ortholog); platelet aggregation (ortholog); ASSOCIATED WITH cataract 9 multiple types (ortholog); developmental and epileptic encephalopathy 30 (ortholog); homocystinuria (ortholog); FOUND IN cytosol (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955407 39290025 39325810 - 102012830 AGCD01007824;GBDI01071573;XM_005375824 XP_005375881 MODEL 8713105 pseudo LOC102028907 histone acetyltransferase KAT2B-like NW_004955557 683826 708841 + 102028907 AGCD01073256;AGCD01073257;AGCD01073258 MODEL 8915530 protein-coding Slc22a13 solute carrier family 22 member 13 ENCODES a protein that exhibits nicotinate transmembrane transporter activity (ortholog); urate transmembrane transporter activity (ortholog); INVOLVED IN negative regulation of fatty acid metabolic process (ortholog); nicotinate transport (ortholog); positive regulation of T cell mediated cytotoxicity directed against tumor cell target (ortholog); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; ASSOCIATED WITH Brugada syndrome (ortholog); Immunodeficiency 68 (ortholog); visceral heterotaxy 4 (ortholog); FOUND IN apical plasma membrane (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955421 5027568 5040000 - 102015731 AGCD01021710;GBCQ01007054;XM_005383735;XM_013513635 XP_005383792;XP_013369089 MODEL 9040448 protein-coding Tgfbr3l transforming growth factor beta receptor 3 like ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 5 (ortholog); mucolipidosis type IV (ortholog) NW_004955563 1348698 1353748 - 102014621 AGCD01074142;AGCD01074143;GBDI01034405;XM_013509129 XP_013364583 MODEL 10218035 protein-coding LOC106149535 translation initiation factor IF-2-like NW_004955448 1637574 1638012 - 106149535 AGCD01041264;GBCE01179599;XM_013518635 XP_013374089 MODEL 8705699 pseudo LOC102005028 FACT complex subunit SSRP1 pseudogene NW_004955469 10948388 10950687 - 102005028 AGCD01052552 MODEL 8885495 protein-coding Selenon selenoprotein N INVOLVED IN ATP metabolic process (ortholog); calcium ion homeostasis (ortholog); calcium ion import (ortholog); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); congenital myopathy 4A (ortholog); congenital structural myopathy (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); mitochondria-associated endoplasmic reticulum membrane contact site (ortholog) NW_004955452 5295716 5311113 + 102008372 AGCD01044015;AGCD01044016;AGCD01044017;GBBH01143587;GBCE01116282;XM_013519601 XP_013375055 MODEL 10097627 ncrna LOC106149684 uncharacterized LOC106149684 NW_004955452 15843799 15851669 + 106149684 AGCD01044501;GBDF01094744;XR_001236008 MODEL 9031441 protein-coding Sidt2 SID1 transmembrane family member 2 ENCODES a protein that exhibits AP-1 adaptor complex binding (ortholog); AP-2 adaptor complex binding (ortholog); double-stranded RNA binding (ortholog); INVOLVED IN cell morphogenesis (ortholog); glucose homeostasis (ortholog); regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN lysosomal membrane (ortholog); lysosome (ortholog); plasma membrane (ortholog) NW_004955412 18505453 18521667 + 102024322 AGCD01012944;GBDJ01139640;XM_005378196;XM_005378197 XP_005378253;XP_005378254 MODEL 8717873 protein-coding Nfil3 nuclear factor, interleukin 3 regulated ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to interleukin-4 (ortholog); natural killer cell differentiation (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 1 (ortholog); advanced sleep phase syndrome (ortholog); inflammatory bowel disease (ortholog); FOUND IN RNA polymerase II transcription regulator complex (ortholog) NW_004955515 908313 910159 + 102012994 AGCD01067214;GBDJ01272876;XM_013506902 XP_013362356 MODEL 9063442 protein-coding Nos3 nitric oxide synthase 3 ENCODES a protein that exhibits actin binding (ortholog); actin monomer binding (ortholog); arginine binding (ortholog); INVOLVED IN angiogenesis (ortholog); aortic valve morphogenesis (ortholog); arginine catabolic process (ortholog); PARTICIPATES IN doxorubicin pharmacokinetics pathway; eicosanoid signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH acute chest syndrome (ortholog); acute kidney failure (ortholog); Acute Liver Failure (ortholog); FOUND IN apical part of cell (ortholog); caveola (ortholog); cytoplasm (ortholog) NW_004955491 5438228 5457308 + 102028098 AGCD01060483;GBDK01130208;XM_005404802;XM_005404803 XP_005404859;XP_005404860 MODEL 39132598 snrna U6 U6 spliceosomal RNA 8971443 ncrna LOC102004333 uncharacterized LOC102004333 NW_004955559 1812453 1815477 - 102004333 AGCD01073670;GBDK01430414;XR_265003 MODEL 39131406 protein-coding YTHDF2 YTH N6-methyladenosine RNA binding protein 2 8932275 protein-coding Tbc1d13 TBC1 domain family member 13 ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN intracellular protein transport (ortholog); regulation of cilium assembly (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog) NW_004955570 1180154 1192525 + 102009333 AGCD01074797;GBBH01117357;GBCQ01033138;XM_005413587 XP_005413644 MODEL 8713883 protein-coding Tnpo3 transportin 3 ENCODES a protein that exhibits identical protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN protein import into nucleus (ortholog); ASSOCIATED WITH autosomal dominant limb-girdle muscular dystrophy (ortholog); autosomal dominant limb-girdle muscular dystrophy type 2 (ortholog); genetic disease (ortholog); FOUND IN annulate lamellae (ortholog); cytosol (ortholog); nuclear envelope (ortholog) NW_004955479 9739927 9831276 - 102007011 AGCD01056494;AGCD01056495;AGCD01056496;AGCD01056497;GBDK01146655;XM_005402403;XM_005402405 XP_005402460;XP_005402462 MODEL 10308944 ncrna LOC106147265 uncharacterized LOC106147265 NW_004955408 27117178 27118621 + 106147265 AGCD01008677;GBDJ01219707;XR_001232072 MODEL 8808503 protein-coding LOC102021855 olfactory receptor 6C3-like NW_004955458 2816076 2817020 - 102021855 AGCD01047245;XM_005397502 XP_005397559 MODEL 10068749 ncrna LOC106148728 uncharacterized LOC106148728 NW_004955427 13372558 13390849 + 106148728 AGCD01027248;GBDF01075922;XR_001234391 MODEL 39133481 snrna U2 U2 spliceosomal RNA 8818242 protein-coding Uvrag UV radiation resistance associated ENCODES a protein that exhibits SH3 domain binding (ortholog); SNARE binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagy (ortholog); centrosome cycle (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH intellectual disability (ortholog); prostate cancer (ortholog); FOUND IN autophagosome membrane (ortholog); centrosome (ortholog); DNA-dependent protein kinase complex (ortholog) NW_004955414 15733116 16043555 - 102023896 AGCD01015188;AGCD01015189;AGCD01015190;AGCD01015191;AGCD01015192;AGCD01015193;AGCD01015194;AGCD01015195;AGCD01015196;AGCD01015197;GBCB01075082;XM_005379880;XM_005379881 XP_005379937;XP_005379938 MODEL 8985951 ncrna LOC102027692 uncharacterized LOC102027692 NW_004955446 6511788 6564170 + 102027692 AGCD01040098;AGCD01040099;AGCD01040100;GBDF01234484;XR_262375 MODEL 39132719 snrna U6 U6 spliceosomal RNA 8854013 protein-coding Ttbk2 tau tubulin kinase 2 ENCODES a protein that exhibits kinesin binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cerebellar granular layer development (ortholog); cerebellar granule cell precursor tangential migration (ortholog); cerebellum development (ortholog); ASSOCIATED WITH autosomal dominant cerebellar ataxia (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN centriole (ortholog); ciliary basal body (ortholog); ciliary base (ortholog) NW_004955416 9412297 9518561 - 102026216 AGCD01017087;AGCD01017088;GBBH01036629;GBCE01141570;XM_013512442 XP_013367896 MODEL 9041029 protein-coding Mgme1 mitochondrial genome maintenance exonuclease 1 ENCODES a protein that exhibits 5'-flap endonuclease activity (ortholog); single-stranded DNA 5'-3' DNA exonuclease activity (ortholog); INVOLVED IN mitochondrial DNA replication (ortholog); mitochondrial genome maintenance (ortholog); ASSOCIATED WITH congenital dyserythropoietic anemia type II (ortholog); COVID-19 (ortholog); Emaciation (ortholog); FOUND IN mitochondrion (ortholog) NW_004955415 26805883 26814485 + 102011306 AGCD01016608;GBDF01044742;XM_005380913 XP_005380970 MODEL 8790873 ncrna LOC102024801 uncharacterized LOC102024801 NW_004955420 1129780 1166417 + 102024801 AGCD01020568;AGCD01020569;GBDF01177069;XR_001233714;XR_001233715 MODEL 8767453 protein-coding LOC102023139 taste receptor type 2 member 125-like NW_004955413 8005210 8006148 - 102023139 AGCD01013841;XM_005379626 XP_005379683 MODEL 8720095 protein-coding Bpgm bisphosphoglycerate mutase ENCODES a protein that exhibits bisphosphoglycerate mutase activity (ortholog); INVOLVED IN cellular response to stress (ortholog); defense response to protozoan (ortholog); erythrocyte development (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH familial erythrocytosis 8 (ortholog); pleomorphic xanthoastrocytoma (ortholog) NW_004955494 7867295 7889440 - 102019610 AGCD01061558;GBBH01208829;XM_005405507;XM_005405508;XM_013505024 XP_005405564;XP_005405565;XP_013360478 MODEL 39133482 snrna U2 U2 spliceosomal RNA 9063362 protein-coding LOC102020585 melanoma-associated antigen 10-like NW_004955498 3052573 3053343 + 102020585 AGCD01062864;XM_005406475 XP_005406532 MODEL 8866682 protein-coding LOC102021856 small integral membrane protein 10-like protein 2A NW_004955460 13310462 13331180 + 102021856 AGCD01048680;XM_005397892 XP_005397949 MODEL 9038031 protein-coding LOC102004626 olfactory receptor 5B2-like NW_004955511 3096845 3097774 - 102004626 AGCD01066442;XM_013506380 XP_013361834 MODEL 10162643 pseudo LOC106149241 prostaglandin E synthase 3-like NW_004955441 292719 293479 - 106149241 AGCD01036699 MODEL 8755077 protein-coding Rpap3 RNA polymerase II associated protein 3 FOUND IN ciliary basal body (ortholog); cilium (ortholog); cytosol (ortholog) NW_004955500 6585969 6595219 - 102023616 AGCD01063886;GBDK01131999;XM_013505705 XP_013361159 MODEL 8719560 protein-coding Tgfbrap1 transforming growth factor beta receptor associated protein 1 ENCODES a protein that exhibits SMAD binding (ortholog); transforming growth factor beta receptor binding (ortholog); INVOLVED IN endosomal vesicle fusion (ortholog); endosome to lysosome transport (ortholog); regulation of DNA-templated transcription (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH long QT syndrome (ortholog); FOUND IN CORVET complex (ortholog); early endosome (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955470 10178936 10223234 - 102027290 AGCD01052858;AGCD01052859;GBDI01294775;XM_005400783;XM_005400784;XM_005400785;XM_013522763 XP_005400840;XP_005400841;XP_005400842;XP_013378217 MODEL 8811756 pseudo LOC102027248 elongation factor 1-alpha 1 pseudogene NW_004955583 7796 8477 + 102027248 AGCD01075789 MODEL 39132599 snrna U6 U6 spliceosomal RNA 8892287 protein-coding Lcp1 lymphocyte cytosolic protein 1 ENCODES a protein that exhibits actin filament binding (ortholog); GTPase binding (ortholog); integrin binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); animal organ regeneration (ortholog); cell migration (ortholog); ASSOCIATED WITH Acute Otitis Media; Experimental Liver Cirrhosis (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog); actin filament bundle (ortholog) NW_004955518 3815181 3863440 - 102019425 AGCD01067810;AGCD01067811;GBCE01054671;XM_005409099 XP_005409156 MODEL 9001094 protein-coding LOC102020586 regenerating islet-derived protein 3-gamma-like NW_004955424 7406415 7408798 - 102020586 AGCD01024435;XM_005385804 XP_005385861 MODEL 8869925 pseudo LOC102022777 pre-mRNA-splicing factor SLU7 pseudogene NW_004955405 19431948 19434013 - 102022777 AGCD01005035 MODEL 9019592 protein-coding Prame PRAME nuclear receptor transcriptional regulator ENCODES a protein that exhibits nuclear retinoic acid receptor binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of cell differentiation (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute megakaryocytic leukemia (ortholog); acute myeloid leukemia (ortholog); FOUND IN chromatin (ortholog); Cul2-RING ubiquitin ligase complex (ortholog); nucleoplasm (ortholog) NW_004955455 6921420 6930453 - 102022356 AGCD01045818;GBDF01080426;XM_005396356;XM_013520391 XP_005396413;XP_013375845 MODEL 8976129 protein-coding LOC102012925 myotubularin-related protein 3 NW_004955455 4120714 4264635 + 102012925 AGCD01045667;AGCD01045668;AGCD01045669;AGCD01045670;AGCD01045671;AGCD01045672;AGCD01045673;GBDF01118467;XM_005396228;XM_005396229;XM_005396230;XM_005396231;XM_005396232;XM_005396233;XM_005396234;XM_005396235;XM_005396237;XM_005396238;XM_005396239 XP_005396285;XP_005396286;XP_005396287;XP_005396288;XP_005396289;XP_005396290;XP_005396291;XP_005396292;XP_005396294;XP_005396295;XP_005396296 MODEL 8883780 protein-coding Gramd1a GRAM domain containing 1A ENCODES a protein that exhibits cholesterol binding (ortholog); cholesterol transfer activity (ortholog); INVOLVED IN cellular response to cholesterol (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 75 (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog) NW_004955468 4347387 4371096 + 102008933 AGCD01051906;AGCD01051907;GBDI01110549;XM_005400014;XM_005400015;XM_005400016;XM_013522359;XM_013522360;XM_013522361;XM_013522362;XM_013522363 XP_005400071;XP_005400072;XP_005400073;XP_013377813;XP_013377814;XP_013377815;XP_013377816;XP_013377817 MODEL 8717792 protein-coding Dipk2a divergent protein kinase domain 2A INVOLVED IN cardiac muscle cell proliferation (ortholog); negative regulation of smooth muscle cell apoptotic process (ortholog); positive regulation of protein kinase C activity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN COPI vesicle coat (ortholog); COPI-coated vesicle (ortholog); extracellular region (ortholog) NW_004955508 1954600 1975842 - 102008647 AGCD01065777;GBCE01030452;XM_005407727 XP_005407784 MODEL 8731137 pseudo LOC102022197 ribose-phosphate pyrophosphokinase 2 pseudogene NW_004955420 10011213 10017218 - 102022197 AGCD01020772 MODEL 8796598 pseudo LOC102027693 histone deacetylase 1 pseudogene NW_004955571 1030760 1032344 + 102027693 AGCD01074866 MODEL 8767706 ncrna LOC102012930 uncharacterized LOC102012930 NW_004955408 11342486 11344637 + 102012930 AGCD01008307;GBDF01286807;XR_259678 MODEL 8972481 protein-coding Uvssa UV stimulated scaffold protein A ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); RNA polymerase II complex binding (ortholog); RNA polymerase inhibitor activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); response to UV (ortholog); transcription-coupled nucleotide-excision repair (ortholog); ASSOCIATED WITH cherubism (ortholog); UV-sensitive syndrome (ortholog); UV-Sensitive Syndrome 3 (ortholog); FOUND IN chromosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955514 725257 754274 + 102015434 AGCD01067019;GBCE01117100;XM_013506804;XM_013506805;XM_013506806;XM_013506807;XM_013506808 XP_013362258;XP_013362259;XP_013362260;XP_013362261;XP_013362262 MODEL 8813188 protein-coding LOC102024806 uncharacterized protein C3orf14 homolog NW_004955420 13411262 13414640 + 102024806 AGCD01020921;XM_013513335 XP_013368789 MODEL 10085199 ncrna LOC106149536 uncharacterized LOC106149536 NW_004955448 870204 872449 - 106149536 AGCD01041239;GBBH01073356;XR_001235789 MODEL 8947267 protein-coding LOC102023141 interleukin-36 gamma NW_004955470 1330732 1339123 - 102023141 AGCD01052634;GBCC01001156;XM_013522843;XM_013522844 XP_013378297;XP_013378298 MODEL 8782965 protein-coding Bphl biphenyl hydrolase like ENCODES a protein that exhibits alpha-amino-acid esterase activity (ortholog); poly(ADP-ribose) glycohydrolase activity (ortholog); serine hydrolase activity (ortholog); INVOLVED IN ATP generation from poly-ADP-D-ribose (ortholog); homocysteine metabolic process (ortholog); xenobiotic metabolic process (ortholog); ASSOCIATED WITH complex cortical dysplasia with other brain malformations 5 (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nuclear body (ortholog) NW_004955465 10093342 10120588 - 102017109 AGCD01050501;AGCD01050502;GBCQ01001027;XM_005398902;XM_005398903;XM_013521831 XP_005398959;XP_005398960;XP_013377285 MODEL 8810262 ncrna LOC102027293 uncharacterized LOC102027293 NW_004955474 5053154 5057209 + 102027293 AGCD01054392;XR_263595 MODEL 8767344 protein-coding LOC102022198 sperm-associated antigen 4 protein-like NW_004955422 29464795 29468790 + 102022198 AGCD01023397;GBDF01000375;XM_005384914;XM_005384915;XM_005384916;XM_005384917 XP_005384971;XP_005384972;XP_005384973;XP_005384974 MODEL 8793579 pseudo LOC102024807 thymocyte nuclear protein 1-like NW_004955421 4631247 4643858 + 102024807 AGCD01021696 MODEL 8834174 ncrna LOC102027250 uncharacterized LOC102027250 NW_004955590 731416 752032 - 102027250 AGCD01076218;AGCD01076219;GBDF01042511;XR_001232536;XR_265125;XR_265126 MODEL 8970017 protein-coding Igdcc4 immunoglobulin superfamily DCC subclass member 4 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); nemaline myopathy 6 (ortholog) NW_004955450 10057064 10083484 + 102007393 AGCD01042604;AGCD01042605;GBCB01074217;GBDJ01043120;XM_013518877 XP_013374331 MODEL 39132603 snrna U6 U6 spliceosomal RNA 10086307 protein-coding LOC106148729 uncharacterized LOC106148729 NW_004955403 14466634 14467307 - 106148729 AGCD01081636;GBBH01168118;XM_013515168 XP_013370622 MODEL 8728607 protein-coding LOC102023144 olfactory receptor 51F2-like NW_004955414 20313365 20314315 + 102023144 AGCD01015368;XM_005380468 XP_005380525 MODEL 8991350 pseudo LOC102028909 ribosomal protein S6 kinase beta-1-like NW_004955562 1425059 1426727 - 102028909 AGCD01073980 MODEL 39132720 snrna U6 U6 spliceosomal RNA 10280225 pseudo LOC106150203 histo-blood group ABO system transferase-like NW_004955468 4272096 4276776 - 106150203 AGCD01051904 MODEL 8930238 protein-coding Ttc1 tetratricopeptide repeat domain 1 FOUND IN cytosol (ortholog) NW_004955408 13966957 14007238 + 102022786 AGCD01008379;GBDK01146252;XM_005376252;XM_005376253 XP_005376309;XP_005376310 MODEL 8713794 pseudo LOC102003513 UDP-glucuronosyltransferase 1-8-like NW_004955453 2600059 2624326 - 102003513 AGCD01044634 MODEL 8718794 ncrna LOC102021859 uncharacterized LOC102021859 NW_004955463 6152064 6152789 - 102021859 AGCD01049657;GBDF01145117;XR_001236626 MODEL 8770056 protein-coding LOC102027694 sulfotransferase family cytosolic 1B member 1 NW_004955447 3038623 3066464 + 102027694 AGCD01040573;AGCD01040574;GBDF01280395;XM_005392792 XP_005392849 MODEL 8720070 pseudo LOC102016255 S-phase kinase-associated protein 1 pseudogene NW_004955413 32899725 32900339 - 102016255 AGCD01014649;XM_005379524 MODEL 9016484 pseudo LOC102004334 zona pellucida sperm-binding protein 2 pseudogene NW_004955443 8434034 8436392 - 102004334 AGCD01038326 MODEL 8987798 protein-coding Nosip nitric oxide synthase interacting protein ENCODES a protein that exhibits molecular sequestering activity (ortholog); INVOLVED IN negative regulation of catalytic activity (ortholog); negative regulation of nitric-oxide synthase activity (ortholog); regulation of nitric oxide biosynthetic process (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); holoprosencephaly (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955559 1287155 1300550 + 102019747 AGCD01073639;AGCD01073640;GBCB01023613;GBDK01134681;XM_013508985 XP_013364439 MODEL 10394139 ncrna LOC106149537 uncharacterized LOC106149537 NW_004955448 16921475 16940008 + 106149537 AGCD01041705;GBDI01148787;XR_001235791 MODEL 8808807 protein-coding Uxs1 UDP-glucuronate decarboxylase 1 ENCODES a protein that exhibits identical protein binding (ortholog); NAD+ binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN UDP-D-xylose biosynthetic process (ortholog); PARTICIPATES IN galactokinase deficiency pathway; GALE deficiency pathway; nucleotide sugar metabolic pathway; ASSOCIATED WITH Craniofacial Abnormalities (ortholog); FOUND IN catalytic complex (ortholog); Golgi membrane (ortholog) NW_004955470 10661210 10706504 - 102004156 AGCD01052874;AGCD01052875;GBDJ01234132;XM_005400792;XM_005400793;XM_013522787 XP_005400849;XP_005400850;XP_013378241 MODEL 8942136 protein-coding Cuedc1 CUE domain containing 1 ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); intellectual disability (ortholog); Joubert syndrome 1 (ortholog) NW_004955451 5054633 5124318 + 102005764 AGCD01043162;AGCD01043163;GBCB01001214;XM_005394044;XM_005394045;XM_005394046 XP_005394101;XP_005394102;XP_005394103 MODEL 8952464 protein-coding LOC102021862 N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase-like NW_004955465 3746876 3764999 - 102021862 AGCD01050389;AGCD01050390;AGCD01050391;GBBH01167444;XM_005398838 XP_005398895 MODEL 8941618 protein-coding Bpi bactericidal permeability increasing protein ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); INVOLVED IN defense response to bacterium (ortholog); immune response (ortholog); negative regulation of interleukin-6 production (ortholog); ASSOCIATED WITH Crohn's disease (ortholog); focal epilepsy (ortholog); severe acute respiratory syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog) NW_004955445 18393854 18433948 - 102012913 AGCD01039904;GBCQ01100945;XM_005392537;XM_013518374;XM_013518375;XM_013518376 XP_005392594;XP_013373828;XP_013373829;XP_013373830 MODEL 8776544 protein-coding LOC102017292 PRAME family member 12-like NW_004955664 6621 10072 + 102017292 AGCD01077903;XM_005415066 XP_005415123 MODEL 8945020 protein-coding Prap1 proline rich acidic protein 1 ENCODES a protein that exhibits triglyceride binding (ortholog); INVOLVED IN cellular response to X-ray (ortholog); deactivation of mitotic spindle assembly checkpoint (ortholog); DNA damage response (ortholog); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular region (ortholog) NW_004955477 10982530 11002747 + 102003965 AGCD01055712;AGCD01055713;GBDF01083668;XM_005402061;XM_005402062;XM_013503054;XR_001230825;XR_001230826 XP_005402118;XP_005402119;XP_013358508 MODEL 39132605 snrna U6 U6 spliceosomal RNA 8958645 protein-coding Mgmt O-6-methylguanine-DNA methyltransferase ENCODES a protein that exhibits calcium ion binding (ortholog); methylated-DNA-[protein]-cysteine S-methyltransferase activity (ortholog); methyltransferase activity (ortholog); INVOLVED IN cellular response to ionizing radiation (ortholog); cellular response to oxidative stress (ortholog); DNA alkylation repair (ortholog); ASSOCIATED WITH Bile Duct Neoplasms (ortholog); Brain Neoplasms (ortholog); breast cancer (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955477 7103035 7375073 + 102017658 AGCD01055613;GBDF01082646;XM_005402022;XM_013503087;XM_013503088;XM_013503089 XP_005402079;XP_013358541;XP_013358542;XP_013358543 MODEL 9002014 pseudo LOC102023835 translationally-controlled tumor protein pseudogene NW_004955513 2626844 2627361 - 102023835 AGCD01066883 MODEL 8778712 protein-coding Selenoo selenoprotein O ENCODES a protein that exhibits AMPylase activity (ortholog); INVOLVED IN protein adenylylation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog); FOUND IN chromosome (ortholog); mitochondrion (ortholog) NW_004955413 33235382 33253484 + 102025109 AGCD01014658;AGCD01014659;AGCD01014660;GBCE01098443;GBDF01287290;XM_005379554 XP_005379611 MODEL 8738804 protein-coding Igf1 insulin like growth factor 1 ENCODES a protein that exhibits growth factor activity (ortholog); hormone activity (ortholog); insulin receptor binding (ortholog); INVOLVED IN activation of protein kinase B activity (ortholog); androgen receptor signaling pathway (ortholog); blood vessel remodeling (ortholog); PARTICIPATES IN altered insulin-like growth factor signaling pathway; cardiovascular system disease pathway; ceramide signaling pathway; ASSOCIATED WITH acne (ortholog); acoustic neuroma (ortholog); acromegaly (ortholog); FOUND IN alphav-beta3 integrin-IGF-1-IGF1R complex (ortholog); exocytic vesicle (ortholog); extracellular space (ortholog) NW_004955405 37505830 37582152 - 102004234 AGCD01005457;GBDJ01018907;XM_005374571;XM_013518800;XM_013518804;XM_013518808;XM_013518811;XM_013518813;XM_013518816;XM_013518821 XP_005374628;XP_013374254;XP_013374258;XP_013374262;XP_013374265;XP_013374267;XP_013374270;XP_013374275 MODEL 8754407 protein-coding Sigirr single Ig and TIR domain containing INVOLVED IN acute-phase response (ortholog); negative regulation of chemokine production (ortholog); negative regulation of cytokine-mediated signaling pathway (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); COVID-19 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN membrane (ortholog) NW_004955476 11603375 11610606 + 102023587 AGCD01055466;GBCE01074106;XM_005401866;XM_013502933;XM_013502934;XM_013502935 XP_005401923;XP_013358387;XP_013358388;XP_013358389 MODEL 8955886 protein-coding Camsap1 calmodulin regulated spectrin associated protein 1 ENCODES a protein that exhibits calmodulin binding (ortholog); microtubule binding (ortholog); microtubule minus-end binding (ortholog); INVOLVED IN cytoskeleton organization (ortholog); microtubule cytoskeleton organization (ortholog); neuron projection development (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN microtubule (ortholog); microtubule minus-end (ortholog) NW_004955513 4649816 4704282 + 102018212 AGCD01066938;GBCB01024793;XM_005408534;XM_005408537;XM_013506691;XM_013506692;XM_013506693;XM_013506694 XP_005408591;XP_005408594;XP_013362145;XP_013362146;XP_013362147;XP_013362148 MODEL 39132606 snrna U6 U6 spliceosomal RNA 8923205 ncrna LOC102003516 uncharacterized LOC102003516 NW_004955456 14326450 14331839 - 102003516 AGCD01046639;GBBH01024435;XR_001236348;XR_262903 MODEL 8818011 protein-coding Tgif1 TGFB induced factor homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); co-SMAD binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); cell population proliferation (ortholog); cellular response to growth factor stimulus (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); Diabetic Nephropathies (ortholog); disorder of sexual development (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955402 7130809 7138945 - 102014189 AGCD01000165;AGCD01000166;GBBH01064453;GBDI01173900;XM_005372651 XP_005372708 MODEL 8776869 protein-coding Mgp matrix Gla protein ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN branching morphogenesis of an epithelial tube (ortholog); lung development (ortholog); ossification (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); arteriosclerosis (ortholog); autosomal dominant intellectual developmental disorder 6 (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular space (ortholog); protein-containing complex (ortholog) NW_004955413 11614851 11618090 - 102003225 AGCD01013966;AY533213;GBCE01002001;NM_001282362 AAS59416;NP_001269291;Q6QN06 PROVISIONAL 8837617 ncrna LOC102020589 uncharacterized LOC102020589 NW_004955427 12073985 12091655 + 102020589 AGCD01027201;AGCD01027202;AGCD01027203;GBDF01275452;XR_261255 MODEL 39132607 snrna U6 U6 spliceosomal RNA 8960978 protein-coding Vwa1 von Willebrand factor A domain containing 1 ENCODES a protein that exhibits identical protein binding (ortholog); microfibril binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN behavioral response to pain (ortholog); extracellular matrix organization (ortholog); protein homooligomerization (ortholog); ASSOCIATED WITH autosomal recessive distal hereditary motor neuronopathy 7 (ortholog); chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955486 9365920 9369117 - 102028199 AGCD01059177;AGCD01059178;GBCB01059659;GBDJ01076230;XM_013504265 XP_013359719 MODEL 8716427 pseudo LOC102022779 U6 snRNA-associated Sm-like protein LSm6 pseudogene NW_004955405 17212899 17223254 + 102022779 AGCD01004987 MODEL 8748440 pseudo LOC102022200 phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN pseudogene NW_004955498 2454830 2456075 - 102022200 AGCD01062795;XM_005406400 MODEL 8953714 protein-coding Lcp2 lymphocyte cytosolic protein 2 INVOLVED IN mast cell activation (ortholog); positive regulation of protein kinase activity (ortholog); T cell receptor signaling pathway (ortholog); PARTICIPATES IN Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); immunodeficiency 40 (ortholog); immunodeficiency 81 (ortholog); FOUND IN cell-cell junction (ortholog); cytosol (ortholog); plasma membrane raft (ortholog) NW_004955408 23200137 23246032 - 102016238 AGCD01008585;AGCD01008586;GBDI01176434;XM_005376313;XM_013509200;XM_013509206 XP_005376370;XP_013364654;XP_013364660 MODEL 8964633 protein-coding Camsap2 calmodulin regulated spectrin associated protein family member 2 ENCODES a protein that exhibits microtubule minus-end binding (ortholog); INVOLVED IN axon development (ortholog); microtubule cytoskeleton organization (ortholog); regulation of dendrite development (ortholog); ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cytosol (ortholog) NW_004955406 36958337 37055748 + 102005771 AGCD01006570;AGCD01006571;GBCQ01093718;XM_005375145;XM_005375146;XM_005375147 XP_005375202;XP_005375203;XP_005375204 MODEL 8858720 protein-coding Cuedc2 CUE domain containing 2 INVOLVED IN negative regulation of cytokine production involved in inflammatory response (ortholog); negative regulation of macrophage cytokine production (ortholog); FOUND IN cytosol (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955485 7969389 7977073 + 102016480 AGCD01058684;GBDF01047348;XM_005403837;XM_005403838;XM_005403839;XM_005403840 XP_005403894;XP_005403895;XP_005403896;XP_005403897 MODEL 39132608 snrna U6 U6 spliceosomal RNA 39132721 snrna U6 U6 spliceosomal RNA 8930493 protein-coding LOC102005029 olfactory receptor 51I2-like NW_004955414 21361256 21362200 - 102005029 AGCD01015416;XM_005380085 XP_005380142 MODEL 8867593 protein-coding Gramd1b GRAM domain containing 1B ENCODES a protein that exhibits cholesterol binding (ortholog); cholesterol transfer activity (ortholog); phosphatidic acid binding (ortholog); INVOLVED IN cellular response to cholesterol (ortholog); cholesterol homeostasis (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); intellectual disability (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog) NW_004955412 24212412 24387798 + 102022064 AGCD01013110;AGCD01013111;AGCD01013112;GBCQ01037515;XM_005378386;XM_005378387;XM_005378389;XM_005378390;XM_005378391;XM_013511136;XM_013511137;XM_013511138;XM_013511139;XM_013511140;XM_013511142 XP_005378443;XP_005378444;XP_005378446;XP_005378447;XP_005378448;XP_013366590;XP_013366591;XP_013366592;XP_013366593;XP_013366594;XP_013366596 MODEL 8707008 protein-coding Nfix nuclear factor I X ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN astrocyte differentiation (ortholog); atrioventricular canal morphogenesis (ortholog); bone mineralization (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 4 (ortholog); alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955415 32055926 32121611 + 102027295 AGCD01016709;AGCD01016710;GBBH01062548;GBCB01005540;XM_005381046 XP_005381103 MODEL 10335293 pseudo LOC106150204 free fatty acid receptor 2-like NW_004955468 4652315 4653309 + 106150204 AGCD01051919 MODEL 9031116 protein-coding Lct lactase ENCODES a protein that exhibits beta-glucosidase activity (ortholog); galactosylceramidase activity (ortholog); glucosylceramidase activity (ortholog); INVOLVED IN cellobiose catabolic process (ortholog); glycosylceramide catabolic process (ortholog); lactose catabolic process (ortholog); PARTICIPATES IN galactose metabolic pathway; galactosemia pathway; lactose degradation pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); colitis (ortholog); congenital lactase deficiency (ortholog); FOUND IN brush border (ortholog); external side of apical plasma membrane (ortholog) NW_004955440 3148730 3197110 - 102009883 AGCD01036236;AGCD01036237;GBDJ01374567;XM_005390764 XP_005390821 MODEL 39132609 snrna U6 U6 spliceosomal RNA 9012888 ncrna LOC102023837 uncharacterized LOC102023837 NW_004955522 920670 928537 - 102023837 AGCD01068353;GBDF01147299;XR_264612 MODEL 10340091 ncrna LOC106147266 uncharacterized LOC106147266 NW_004955408 1107092 1110510 - 106147266 AGCD01007950;XR_001232073 MODEL 39132722 snrna U6 U6 spliceosomal RNA 39131361 protein-coding RPAP3 RNA polymerase II associated protein 3 8813954 ncrna LOC102024816 uncharacterized LOC102024816 NW_004955424 1831514 1835529 - 102024816 AGCD01024248;GBDK01279858;XR_261030 MODEL 39132612 snrna U6 U6 spliceosomal RNA 8948851 protein-coding Ubash3b ubiquitin associated and SH3 domain containing B ENCODES a protein that exhibits identical protein binding (ortholog); phosphoprotein binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN collagen-activated signaling pathway (ortholog); collagen-activated tyrosine kinase receptor signaling pathway (ortholog); negative regulation of bone resorption (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); schizophrenia (ortholog) NW_004955412 23518851 23667617 + 102017317 AGCD01013089;AGCD01013090;AGCD01013091;AGCD01013092;GBCE01023403;XM_005378366;XM_013511127 XP_005378423;XP_013366581 MODEL 9035075 ncrna LOC102027252 uncharacterized LOC102027252 NW_004955450 8997279 9002931 - 102027252 AGCD01042581;AGCD01042582;GBDF01208608;XR_001235849;XR_262541 MODEL 8986597 protein-coding LOC102026220 transmembrane protein 132B NW_004955482 4337028 4550580 - 102026220 AGCD01057287;AGCD01057288;AGCD01057289;AGCD01057290;AGCD01057291;AGCD01057292;AGCD01057293;AGCD01057294;GBDF01116362;XM_013503744;XM_013503745;XM_013503746;XM_013503747 XP_013359198;XP_013359199;XP_013359200;XP_013359201 MODEL 8932083 protein-coding Tgif2 TGFB induced factor homeobox 2 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); neuron differentiation (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); FOUND IN centrosome (ortholog); nucleoplasm (ortholog) NW_004955422 25024359 25042568 - 102025475 AGCD01023240;GBDK01361422;XM_005384746;XM_005384747;XM_005384748;XM_005384749;XM_005384750;XM_005384751 XP_005384803;XP_005384804;XP_005384805;XP_005384806;XP_005384807;XP_005384808 MODEL 10162644 ncrna LOC106149685 uncharacterized LOC106149685 NW_004955452 9410697 9420475 + 106149685 AGCD01044237;GBBH01147680;XR_001236009 MODEL 8959018 protein-coding Dipk2b divergent protein kinase domain 2B ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); hepatocellular carcinoma (ortholog) NW_004955516 3041112 3081740 + 102029321 AGCD01067480;AGCD01067481;GBDK01237416;XM_005408985;XM_013506933 XP_005409042;XP_013362387 MODEL 8813189 protein-coding LOC102024817 melanoma-associated antigen 10-like NW_004955498 4743080 4743838 + 102024817 AGCD01063016;XM_005406486 XP_005406543 MODEL 8834092 pseudo LOC102022781 centromere protein N pseudogene NW_004955454 2753498 2754847 - 102022781 AGCD01045032 MODEL 10214239 pseudo LOC106149242 E3 ubiquitin-protein ligase RNF125 pseudogene NW_004955441 6936381 6938677 + 106149242 AGCD01036945 MODEL 8715297 pseudo LOC102004631 quinone oxidoreductase-like protein 2 NW_004955432 19214738 19226859 - 102004631 AGCD01031171;AGCD01031172;AGCD01031173;AGCD01031174 MODEL 39132614 snrna U6 U6 spliceosomal RNA 8941111 protein-coding LOC102024819 caspase-3-like NW_004955502 1776369 1777339 + 102024819 AGCD01064287;XM_005406878 XP_005406935 MODEL 8822282 protein-coding LOC102027695 PNMA-like protein 1 NW_004955574 624881 629072 - 102027695 AGCD01075116;GBDI01287814;XM_005413835 XP_005413892 MODEL 8925030 pseudo LOC102016258 60S ribosomal protein L26 pseudogene NW_004955414 20216393 20216831 + 102016258 AGCD01015364 MODEL 8750915 pseudo LOC102004336 olfactory receptor 7G1-like NW_004955563 207086 223744 + 102004336 AGCD01074053 MODEL 39132615 snrna U6 U6 spliceosomal RNA 8922190 protein-coding Gramd1c GRAM domain containing 1C ENCODES a protein that exhibits cholesterol binding (ortholog); cholesterol transfer activity (ortholog); INVOLVED IN cellular response to cholesterol (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog); plasma membrane (ortholog) NW_004955427 13957746 14044473 + 102007253 AGCD01027262;AGCD01027263;AGCD01027264;GBDF01249293;XM_005386407 XP_005386464 MODEL 8740345 protein-coding Esrrg estrogen related receptor gamma ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); estrogen response element binding (ortholog); identical protein binding (ortholog); INVOLVED IN positive regulation of cold-induced thermogenesis (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Fetal Growth Retardation (ortholog); gastrointestinal stromal tumor (ortholog); Loeys-Dietz syndrome 4 (ortholog) NW_004955406 1260240 1784652 + 102009797 AGCD01005630;AGCD01005631;AGCD01005632;AGCD01005633;AGCD01005634;AGCD01005635;AGCD01005636;GBCB01100801;XM_005374714;XM_013519877;XM_013519883;XM_013519891;XM_013519896;XM_013519901;XM_013519909;XM_013519919;XM_013519926 XP_005374771;XP_013375331;XP_013375337;XP_013375345;XP_013375350;XP_013375355;XP_013375363;XP_013375373;XP_013375380 MODEL 8844173 protein-coding Nfkb1 nuclear factor kappa B subunit 1 ENCODES a protein that exhibits actinin binding (ortholog); chromatin binding (ortholog); DNA binding (ortholog); INVOLVED IN antibacterial innate immune response (ortholog); B cell receptor signaling pathway (ortholog); canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN adenosine signaling pathway; ceramide signaling pathway; erythropoietin signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); adenocarcinoma (ortholog); alcoholic hepatitis (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955496 5842734 5950995 - 102017892 AGCD01062358;AGCD01062359;AGCD01062360;GBBH01116748;GBCQ01125611;XM_013505395;XM_013505396;XM_013505397 XP_013360849;XP_013360850;XP_013360851 MODEL 8975249 ncrna LOC102003519 uncharacterized LOC102003519 NW_004955459 3020453 3021512 - 102003519 AGCD01048006;GBDF01017116;XR_263011 MODEL 39133483 snrna U2 U2 spliceosomal RNA 8950497 protein-coding LOC102027698 olfactory receptor 2T6-like NW_004955581 938962 940210 - 102027698 AGCD01075705;GBBH01156700;XM_013509746 XP_013365200 MODEL 39132616 snrna U6 U6 spliceosomal RNA 9032833 ncrna LOC102004338 uncharacterized LOC102004338 NW_004955569 1198723 1215199 - 102004338 AGCD01074644;GBDF01080568;XR_001232427;XR_265045 MODEL 9065153 protein-coding Camsap3 calmodulin regulated spectrin associated protein family member 3 ENCODES a protein that exhibits actin filament binding (ortholog); microtubule minus-end binding (ortholog); INVOLVED IN cilium movement (ortholog); embryo development ending in birth or egg hatching (ortholog); epithelial cell-cell adhesion (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 5 (ortholog); mucolipidosis type IV (ortholog); FOUND IN axoneme (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955563 1639369 1648826 - 102016207 AGCD01074154;AGCD01074155;GBCE01131503;GBDF01220733;XM_013509146 XP_013364600 MODEL 9051021 protein-coding Ttc12 tetratricopeptide repeat domain 12 INVOLVED IN axonemal dynein complex assembly (ortholog); sperm axoneme assembly (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); alcohol dependence (ortholog); Asthenozoospermia (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955412 14945237 15011560 + 102007096 AGCD01012863;AGCD01012864;AGCD01012865;GBDF01016223;XM_005378139;XM_005378141;XM_005378142;XM_013511097 XP_005378196;XP_005378198;XP_005378199;XP_013366551 MODEL 8894995 protein-coding Tgif2lx TGFB induced factor homeobox 2 like X-linked ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); developmental and epileptic encephalopathy 9 (ortholog) NW_004955525 2697167 2697772 + 102022009 AGCD01069103;GBDF01112701;XM_005409737 XP_005409794 MODEL 9052141 protein-coding Tnr tenascin R ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN associative learning (ortholog); axon extension (ortholog); axon extension involved in regeneration (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cell surface (ortholog); collagen-containing extracellular matrix (ortholog); extracellular matrix (ortholog) NW_004955406 15007248 15512219 - 102015803 AGCD01005975;AGCD01005976;AGCD01005977;AGCD01005978;AGCD01005979;AGCD01005980;AGCD01005981;GBDI01106197;XM_013520943;XR_001236463;XR_001236464 XP_013376397 MODEL 39132617 snrna U6 U6 spliceosomal RNA 8862434 protein-coding Tbc1d14 TBC1 domain family member 14 ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN negative regulation of autophagy (ortholog); recycling endosome to Golgi transport (ortholog); regulation of autophagosome assembly (ortholog); FOUND IN autophagosome (ortholog); Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955514 3485975 3553840 - 102016628 AGCD01067097;AGCD01067098;AGCD01067099;GBBH01092531;GBCE01045686;XM_013506762 XP_013362216 MODEL 9011515 protein-coding Siglec1 sialic acid binding Ig like lectin 1 ENCODES a protein that exhibits virion binding (ortholog); INVOLVED IN clathrin-dependent endocytosis (ortholog); clathrin-dependent endocytosis of virus by host cell (ortholog); negative regulation of phagocytosis (ortholog); ASSOCIATED WITH Human Influenza (ortholog); Huntington's disease-like 1 (ortholog); Inosine Triphosphatase Deficiency (ortholog); FOUND IN early endosome (ortholog); endocytic vesicle (ortholog); late endosome (ortholog) NW_004955415 14539284 14560614 - 102028630 AGCD01016300;GBBH01214194;XM_005380797;XR_001233251 XP_005380854 MODEL 10307999 protein-coding LOC106149538 translation initiation factor IF-2-like NW_004955448 4330067 4366760 - 106149538 AGCD01041342;AGCD01041343;AGCD01041344;GBBH01155531;GBDF01253015;XM_013518657 XP_013374111 MODEL 8884018 protein-coding Diras1 DIRAS family GTPase 1 ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); mitogen-activated protein kinase binding (ortholog); INVOLVED IN positive regulation of MAP kinase activity (ortholog); ASSOCIATED WITH early myoclonic encephalopathy (ortholog); Neurodevelopmental Disorders (ortholog); progressive myoclonus epilepsy 9 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955495 5002803 5005203 - 102017995 AGCD01061969;GBDJ01193820;XM_005405828 XP_005405885 MODEL 39132618 snrna U6 U6 spliceosomal RNA 8943771 pseudo LOC102021863 uncharacterized LOC102021863 NW_004955465 6775792 6836185 + 102021863 AGCD01050448 MODEL 8930133 protein-coding Lrrc55 leucine rich repeat containing 55 ENCODES a protein that exhibits potassium channel activator activity (ortholog); transmembrane transporter binding (ortholog); voltage-gated potassium channel activity (ortholog); INVOLVED IN positive regulation of voltage-gated potassium channel activity (ortholog); potassium ion transmembrane transport (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN voltage-gated potassium channel complex (ortholog) NW_004955511 2278638 2287435 + 102014384 AGCD01066396;GBDF01113350;XM_013506516 XP_013361970 MODEL 9033762 protein-coding Lrrc29 Leucine-rich repeat-containing protein 29 ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); pneumoconiosis (ortholog) NW_004955484 9399034 9414493 + 102009060 AGCD01058415;GBDF01053368;XM_005403671;XM_005403674;XM_013503906;XM_013503908;XM_013503909;XM_013503910;XM_013503911;XM_013503912;XM_013503913 XP_005403728;XP_005403731;XP_013359360;XP_013359362;XP_013359363;XP_013359364;XP_013359365;XP_013359366;XP_013359367 MODEL 9032194 protein-coding Gramd2a GRAM domain containing 2A ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN endoplasmic reticulum-plasma membrane tethering (ortholog); regulation of store-operated calcium entry (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Tay-Sachs disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); organelle membrane contact site (ortholog); plasma membrane (ortholog) NW_004955450 4936357 4960643 + 102005431 AGCD01042486;AGCD01042487;GBDK01013410;XM_005393624 XP_005393681 MODEL 8749467 protein-coding Rpe ribulose-5-phosphate-3-epimerase ENCODES a protein that exhibits carbohydrate binding (ortholog); D-ribulose-phosphate 3-epimerase activity (ortholog); identical protein binding (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); pentose-phosphate shunt (ortholog); pentose-phosphate shunt, non-oxidative branch (ortholog); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - non-oxidative phase; ribose 5-phosphate isomerase deficiency pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); primary pulmonary hypertension (ortholog); trichorhinophalangeal syndrome type I (ortholog); FOUND IN cytosol (ortholog) NW_004955457 5425532 5441538 - 102029369 AGCD01046818;GBDK01361133;XM_005396947;XM_013520676;XM_013520677;XM_013520678;XM_013520679;XM_013520680;XM_013520681;XM_013520682 XP_005397004;XP_013376130;XP_013376131;XP_013376132;XP_013376133;XP_013376134;XP_013376135;XP_013376136 MODEL 8776633 protein-coding Prc1 protein regulator of cytokinesis 1 ENCODES a protein that exhibits identical protein binding (ortholog); kinesin binding (ortholog); protein kinase binding (ortholog); INVOLVED IN positive regulation of cell population proliferation (ortholog); regulation of cytokinesis (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); Breast Cancer, Familial (ortholog); breast carcinoma (ortholog); FOUND IN contractile ring (ortholog); intercellular bridge (ortholog); microtubule cytoskeleton (ortholog) NW_004955416 15023620 15045958 - 102018828 AGCD01017296;AGCD01017297;GBDJ01422852;XM_005381518;XM_005381519;XM_005381521;XM_013512475 XP_005381575;XP_005381576;XP_005381578;XP_013367929 MODEL 39132622 snrna U6 U6 spliceosomal RNA 8753259 protein-coding Ubd ubiquitin D ENCODES a protein that exhibits proteasome binding (ortholog); INVOLVED IN aggresome assembly (ortholog); myeloid dendritic cell differentiation (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH Animal Hepatitis (ortholog); Breast Neoplasms (ortholog); celiac disease (ortholog); FOUND IN aggresome (ortholog); cytoplasm (ortholog); fibrillar center (ortholog) NW_004955583 29438 29873 - 102027921 AGCD01075791;XM_013509775 XP_013365229 MODEL 8845226 pseudo LOC102021865 histone-lysine N-methyltransferase SUV39H2-like NW_004955466 11408957 11433268 - 102021865 AGCD01051093 MODEL 8758639 pseudo LOC102027699 60S acidic ribosomal protein P0 pseudogene NW_004955449 12867020 12867965 - 102027699 AGCD01042126 MODEL 8791005 protein-coding LOC102005030 olfactory receptor 226 NW_004955414 22706291 22707274 - 102005030 AGCD01015472;XM_005380180 XP_005380237 MODEL 8855019 protein-coding Selenop selenoprotein P ENCODES a protein that exhibits selenium binding (ortholog); INVOLVED IN brain development (ortholog); locomotory behavior (ortholog); post-embryonic development (ortholog); ASSOCIATED WITH adenoma (ortholog); Animal Mammary Neoplasms (ortholog); Cadmium Poisoning (ortholog); FOUND IN extracellular space (ortholog) NW_004955426 26951003 26961839 - 102029203 AGCD01026791;GBCE01003987;XM_005386255;XM_013514989 XP_005386312;XP_013370443 MODEL 8950406 protein-coding Lrrc3 leucine rich repeat containing 3 ASSOCIATED WITH autistic disorder (ortholog); autoimmune polyendocrine syndrome type 1 (ortholog); cataract 9 multiple types (ortholog) NW_004955407 41053671 41056103 - 102025324 AGCD01007854;GBDF01287458;XM_005375859 XP_005375916 MODEL 9031652 pseudo LOC102004632 protein DBF4 homolog A pseudogene NW_004955520 4533977 4536441 + 102004632 AGCD01068120 MODEL 8869875 ncrna LOC102021868 uncharacterized LOC102021868 NW_004955413 17831133 17838059 - 102021868 AGCD01014164;GBDF01081370;XR_260086 MODEL 8822820 pseudo LOC102020592 S-methyl-5'-thioadenosine phosphorylase pseudogene NW_004955506 689688 693004 + 102020592 AGCD01065234 MODEL 9044125 protein-coding Ube2a ubiquitin conjugating enzyme E2 A ENCODES a protein that exhibits ubiquitin conjugating enzyme activity (ortholog); ubiquitin protein ligase binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN blastocyst hatching (ortholog); chromatin remodeling (ortholog); DNA repair (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN chromatin (ortholog); HULC complex (ortholog); XY body (ortholog) NW_004955534 411602 485964 - 102022539 AGCD01070450;AGCD01070451;AGCD01070452;AGCD01070453;AGCD01070454;AGCD01070455;GBBH01164998;GBCB01003717;XM_005410478 XP_005410535 MODEL 9042228 protein-coding Tnrc18 trinucleotide repeat containing 18 ASSOCIATED WITH Baraitser-Winter syndrome 1 (ortholog); megacolon (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nuclear membrane (ortholog) NW_004955460 10183836 10270626 - 102028832 AGCD01048575;AGCD01048576;GBBH01088705;GBDI01074607;XM_013521119;XM_013521120;XM_013521121;XM_013521122;XM_013521123;XM_013521124;XM_013521125 XP_013376573;XP_013376574;XP_013376575;XP_013376576;XP_013376577;XP_013376578;XP_013376579 MODEL 10243323 ncrna LOC106148730 uncharacterized LOC106148730 NW_004955427 6337930 6344146 + 106148730 AGCD01027026;XR_001234394 MODEL 8739733 protein-coding LOC102022201 melanoma-associated antigen 11-like NW_004955498 4031910 4032668 - 102022201 AGCD01062960;XM_005406480 XP_005406537 MODEL 8803946 protein-coding LOC102028913 dapper homolog 3-like NW_004955574 710012 717852 - 102028913 AGCD01075125;AGCD01075126;GBDF01154132;GBDJ01177439;XM_013509565;XM_013509566 XP_013365019;XP_013365020 MODEL 8741063 protein-coding Vwa2 von Willebrand factor A domain containing 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN calcium-independent cell-matrix adhesion (ortholog); regulation of insulin receptor signaling pathway (ortholog); ASSOCIATED WITH vesicoureteral reflux (ortholog); FOUND IN basement membrane (ortholog); extracellular region (ortholog); extracellular space (ortholog) NW_004955431 19224373 19274475 + 102016083 AGCD01030445;AGCD01030446;AGCD01030447;GBDI01115147;XM_005387824;XM_005387825;XM_013515834 XP_005387881;XP_005387882;XP_013371288 MODEL 8719926 pseudo LOC102012938 60S ribosomal protein L37a-like NW_004955464 13764223 13764774 + 102012938 AGCD01050293 MODEL 8938877 protein-coding Diras2 DIRAS family GTPase 2 ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN positive regulation of MAP kinase activity (ortholog); FOUND IN plasma membrane (ortholog) NW_004955515 1526436 1551811 + 102014479 AGCD01067230;GBBH01086252;GBDK01025126;XM_005408872 XP_005408929 MODEL 8890165 pseudo LOC102026223 60S acidic ribosomal protein P2 pseudogene NW_004955491 1798170 1798517 + 102026223 AGCD01060361;XM_005404886 MODEL 10328018 ncrna LOC106148731 uncharacterized LOC106148731 NW_004955403 20061588 20068661 - 106148731 AGCD01002152;GBDF01211881;XR_001234395 MODEL 8846110 pseudo LOC102028914 cytochrome P450 2A10-like NW_004955578 318847 325722 + 102028914 AGCD01075471 MODEL 8886873 pseudo LOC102027296 splicing regulatory glutamine/lysine-rich protein 1 pseudogene NW_004955415 6100244 6101868 - 102027296 AGCD01016012 MODEL 8746723 protein-coding Cul1 cullin 1 ENCODES a protein that exhibits ubiquitin ligase complex scaffold activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); apoptotic process (ortholog); cell population proliferation (ortholog); PARTICIPATES IN neddylation pathway; Notch signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH cortical dysplasia-focal epilepsy syndrome (ortholog); Stevens-Johnson syndrome (ortholog); Weaver syndrome (ortholog); FOUND IN cullin-RING ubiquitin ligase complex (ortholog); Parkin-FBXW7-Cul1 ubiquitin ligase complex (ortholog); plasma membrane (ortholog) NW_004955491 4165400 4212483 + 102026875 AGCD01060419;AGCD01060420;GBDF01010811;XM_005404888 XP_005404945 MODEL 8959313 ncrna LOC102012948 uncharacterized LOC102012948 NW_004955469 10456258 10462046 - 102012948 AGCD01052535;GBCE01121126;XR_001236982;XR_001236983;XR_263447 MODEL 9061906 protein-coding LOC102026225 syntaxin-4 NW_004955493 7878742 7885454 + 102026225 AGCD01061234;GBDK01358325;XM_005405291 XP_005405348 MODEL 8806966 pseudo LOC102023146 protein tilB homolog pseudogene NW_004955474 11766720 11768370 - 102023146 AGCD01054636 MODEL 8804705 protein-coding Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); endonuclease activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN CUT catabolic process (ortholog); RNA catabolic process (ortholog); RNA processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); Joubert syndrome 33 (ortholog); multiple myeloma (ortholog); FOUND IN cytosol (ortholog); nuclear exosome (RNase complex) (ortholog); nucleolus (ortholog) NW_004955404 33897681 33924069 + 102027138 AGCD01004083;AGCD01004084;GBDF01193658;XM_005374190;XM_005374191;XR_001234968 XP_005374247;XP_005374248 MODEL 8987011 protein-coding Uxt ubiquitously expressed prefoldin like chaperone ENCODES a protein that exhibits actin filament binding (ortholog); beta-tubulin binding (ortholog); chromatin binding (ortholog); INVOLVED IN centrosome cycle (ortholog); microtubule cytoskeleton organization (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog) NW_004955516 421402 429804 + 102015881 AGCD01067384;AGCD01067385;GBDJ01313411;XM_005408943 XP_005409000 MODEL 9016485 protein-coding LOC102004635 uncharacterized LOC102004635 NW_004955524 2023272 2031552 + 102004635 AGCD01068792;GBDF01249148;XM_013507193 XP_013362647 MODEL 8894089 protein-coding Siglec15 sialic acid binding Ig like lectin 15 INVOLVED IN regulation of actin cytoskeleton organization (ortholog); regulation of bone resorption (ortholog); regulation of osteoclast development (ortholog); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); Microcephaly, Epilepsy, and Diabetes Syndrome (ortholog); FOUND IN plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955402 31403765 31418954 + 102025196 AGCD01000788;GBCE01055940;XM_013510392 XP_013365846 MODEL 8917789 pseudo LOC102026227 pleckstrin homology domain-containing family A member 3 pseudogene NW_004955494 529646 530542 + 102026227 AGCD01061380 MODEL 8813518 protein-coding Ess2 ess-2 splicing factor homolog INVOLVED IN mRNA splicing, via spliceosome (ortholog); nervous system development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nucleus (ortholog) NW_004955442 18829037 18840542 + 102012369 AGCD01038021;AGCD01038022;GBDF01125719;XM_005391788 XP_005391845 MODEL 8811067 protein-coding Krt17 keratin 17 INVOLVED IN hair follicle morphogenesis (ortholog); intermediate filament organization (ortholog); keratinization (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Chloracne (ortholog); ectodermal dysplasia (ortholog); FOUND IN cell periphery (ortholog); cornified envelope (ortholog); cytoplasm (ortholog) NW_004955451 15940137 15944392 - 102005549 AGCD01043641;GBCQ01154543;XM_005394413 XP_005394470 MODEL 9026084 pseudo LOC102004637 TBC1 domain family member 12 pseudogene NW_004955435 21292150 21303948 - 102004637 AGCD01033474;AGCD01033475 MODEL 39132623 snrna U6 U6 spliceosomal RNA 9050946 protein-coding Esx1 ESX homeobox 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN blood vessel development (ortholog); labyrinthine layer blood vessel development (ortholog); labyrinthine layer morphogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955548 1087441 1095070 - 102004647 AGCD01072356;AGCD01072357;AGCD01072358;GBDF01189839;XM_005412009 XP_005412066 MODEL 10244350 ncrna LOC106147267 uncharacterized LOC106147267 NW_004955537 2254865 2257130 + 106147267 AGCD01070921;GBDK01389871;XR_001232076 MODEL 9062235 protein-coding Prcc proline rich mitotic checkpoint control factor INVOLVED IN regulation of cell cycle (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog) NW_004955545 2846116 2878247 + 102009653 AGCD01071925;AGCD01071926;AGCD01071927;GBBH01141585;XM_005411704;XM_013508208;XM_013508209 XP_005411761;XP_013363662;XP_013363663 MODEL 8796741 protein-coding Ttc13 tetratricopeptide repeat domain 13 ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); congenital disorder of glycosylation type IIq (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955492 7683353 7743066 + 102010376 AGCD01060802;GBCE01104916;XM_005404982;XM_005404984 XP_005405039;XP_005405041 MODEL 8840050 protein-coding Tgm2 transglutaminase 2 ENCODES a protein that exhibits calcium ion binding (ortholog); GTP binding (ortholog); histone dopaminyltransferase activity (ortholog); INVOLVED IN apoptotic cell clearance (ortholog); blood vessel remodeling (ortholog); branching involved in salivary gland morphogenesis (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ASSOCIATED WITH Brain Neoplasms (ortholog); Breast Neoplasms (ortholog); celiac disease (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955445 18544192 18576576 + 102014186 AGCD01039906;GBCB01061029;XM_005392542 XP_005392599 MODEL 8798048 protein-coding LOC102028916 P2Y purinoceptor 3-like NW_004955448 9564526 9566000 - 102028916 AGCD01041477;XM_005393109 XP_005393166 MODEL 8873412 ncrna LOC102027297 uncharacterized LOC102027297 NW_004955476 10169438 10177975 + 102027297 AGCD01055413;GBCQ01149226;XR_263636 MODEL 9001383 protein-coding LOC102005031 sulfotransferase 1C1-like NW_004955470 11811445 11825101 - 102005031 AGCD01052900;AGCD01052901;GBBH01222010;GBDJ01271388;XM_013522679 XP_013378133 MODEL 39132624 snrna U6 U6 spliceosomal RNA 8887219 ncrna LOC102017296 uncharacterized LOC102017296 NW_004955452 3581408 3586059 - 102017296 AGCD01043931;GBDF01144605;XR_262645 MODEL 8900018 protein-coding Selenos selenoprotein S ENCODES a protein that exhibits antioxidant activity (ortholog); ATPase binding (ortholog); enzyme binding (ortholog); INVOLVED IN cell redox homeostasis (ortholog); cellular response to lipopolysaccharide (ortholog); cellular response to oxidative stress (ortholog); ASSOCIATED WITH colorectal adenoma (ortholog); colorectal carcinoma (ortholog); Inflammation (ortholog); FOUND IN cytoplasmic microtubule (ortholog); Derlin-1 retrotranslocation complex (ortholog); Derlin-1-VIMP complex (ortholog) NW_004955416 28152984 28162173 - 102010481 AGCD01017626;GBBH01033790;XM_013512671;XM_013512672 XP_013368125;XP_013368126 MODEL 9035096 pseudo LOC102003520 60S ribosomal protein L39 pseudogene NW_004955459 14326789 14327010 - 102003520 AGCD01048297 MODEL 39133484 snrna U2 U2 spliceosomal RNA 8745125 protein-coding LOC102023147 zinc finger X-linked protein ZXDB NW_004955475 3824048 3826106 + 102023147 AGCD01054856;GBBH01186410;XM_005401702 XP_005401759 MODEL 39132625 snrna U6 U6 spliceosomal RNA 8880768 protein-coding LOC102020594 acyl-CoA dehydrogenase family member 9, mitochondrial-like NW_004955429 18133117 18155062 + 102020594 AGCD01028881;GBBH01021101;XM_005387111;XM_013515559 XP_005387168;XP_013371013 MODEL 8767552 protein-coding Dis3l DIS3 like exosome 3'-5' exoribonuclease ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); enzyme binding (ortholog); exoribonuclease II activity (ortholog); INVOLVED IN RNA catabolic process (ortholog); RNA processing (ortholog); rRNA catabolic process (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cytoplasmic exosome (RNase complex) (ortholog) NW_004955450 9279323 9313402 - 102029577 AGCD01042589;AGCD01042590;GBDI01186429;GBDK01240217;XM_005393704 XP_005393761 MODEL 9026631 pseudo LOC102026229 lysine-rich coiled-coil protein 1-like NW_004955422 24105442 24108369 + 102026229 AGCD01023215 MODEL 8806623 protein-coding Ube2b ubiquitin conjugating enzyme E2 B ENCODES a protein that exhibits ubiquitin conjugating enzyme activity (ortholog); ubiquitin protein ligase binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN apoptotic process (ortholog); cellular response to insulin stimulus (ortholog); chiasma assembly (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); HULC complex (ortholog) NW_004955408 5552619 5572145 + 102013253 AGCD01008141;AGCD01008142;GBBH01064886;XM_005376138;XM_005376139;XM_005376140;XM_005376142;XM_013508521 XP_005376195;XP_005376196;XP_005376197;XP_005376199;XP_013363975 MODEL 39133380 snrna U2 U2 spliceosomal RNA 8755348 protein-coding Igf1r insulin like growth factor 1 receptor ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); identical protein binding (ortholog); insulin binding (ortholog); INVOLVED IN adrenal gland development (ortholog); amyloid-beta clearance (ortholog); animal organ morphogenesis (ortholog); PARTICIPATES IN E-cadherin signaling pathway; insulin-like growth factor signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); adrenocortical carcinoma (ortholog); alcoholic neuropathy (ortholog); FOUND IN alphav-beta3 integrin-IGF-1-IGF1R complex (ortholog); axon (ortholog); caveola (ortholog) NW_004955416 26101090 26382660 - 102029077 AGCD01017594;AGCD01017595;GBDJ01230004;XM_005381615;XM_013512515 XP_005381672;XP_013367969 MODEL 9036726 protein-coding Camta1 calmodulin binding transcription activator 1 ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); INVOLVED IN neuromuscular process controlling balance (ortholog); positive regulation of calcineurin-NFAT signaling cascade (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Developmental Disease (ortholog); genetic disease (ortholog) NW_004955486 5115469 5890028 - 102005940 AGCD01059076;AGCD01059077;AGCD01059078;AGCD01059079;AGCD01059080;AGCD01059081;AGCD01059082;AGCD01059083;AGCD01059084;AGCD01059085;AGCD01059086;AGCD01059087;AGCD01059088;AGCD01059089;AGCD01059090;AGCD01059091;AGCD01059092;AGCD01059093;GBBH01123896;XM_005404071;XM_005404072;XM_005404073 XP_005404128;XP_005404129;XP_005404130 MODEL 39132417 snrna U6 U6 spliceosomal RNA 8871182 protein-coding Scarb1 scavenger receptor class B member 1 ENCODES a protein that exhibits amyloid-beta binding (ortholog); apolipoprotein A-I binding (ortholog); apolipoprotein binding (ortholog); INVOLVED IN aflatoxin metabolic process (ortholog); androgen biosynthetic process (ortholog); blood vessel endothelial cell migration (ortholog); PARTICIPATES IN retinol metabolic pathway; reverse cholesterol transport pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); cannabis abuse (ortholog); carcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); caveola (ortholog) NW_004955482 4813502 4836479 + 102009609 AGCD01057311;GBBH01183747;XM_005403004;XM_005403005;XM_005403006;XM_005403007;XM_013503708 XP_005403061;XP_005403062;XP_005403063;XP_005403064;XP_013359162 MODEL 8731221 protein-coding LOC102026231 zinc finger protein 426-like NW_004955495 1149827 1164971 + 102026231 AGCD01061675;GBDF01220270;XM_013505050 XP_013360504 MODEL 39132420 snrna U6 U6 spliceosomal RNA 8969485 protein-coding Dis3l2 DIS3 like 3'-5' exoribonuclease 2 ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); magnesium ion binding (ortholog); poly(U) RNA binding (ortholog); INVOLVED IN miRNA catabolic process (ortholog); mitotic cell cycle (ortholog); mitotic sister chromatid separation (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatoblastoma (ortholog); Joubert syndrome 22 (ortholog); FOUND IN cytoplasm (ortholog); P-body (ortholog) NW_004955453 3558744 3851222 - 102017534 AGCD01044664;AGCD01044665;AGCD01044666;AGCD01044667;AGCD01044668;AGCD01044669;GBDK01278639;XM_005395381;XM_005395382;XM_005395383;XM_005395384;XM_005395385;XM_013519947 XP_005395438;XP_005395439;XP_005395440;XP_005395441;XP_005395442;XP_013375401 MODEL 8720526 protein-coding Nfkb2 nuclear factor kappa B subunit 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN canonical NF-kappaB signal transduction (ortholog); extracellular matrix organization (ortholog); follicular dendritic cell differentiation (ortholog); PARTICIPATES IN adenosine signaling pathway; interleukin-12 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH atrophic gastritis (ortholog); Cerebral Hemorrhage (ortholog); common variable immunodeficiency (ortholog); FOUND IN Bcl3/NF-kappaB2 complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955485 7994730 8001776 - 102015728 AGCD01058686;AGCD01058687;AGCD01058688;GBBH01092140;GBDK01090755;XM_013504082 XP_013359536 MODEL 9048829 protein-coding Camta2 calmodulin binding transcription activator 2 ENCODES a protein that exhibits chromatin binding (ortholog); histone deacetylase binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN cardiac muscle hypertrophy in response to stress (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH congenital myasthenic syndrome 4A (ortholog); spastic ataxia 2 (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955467 10375017 10391546 - 102022581 AGCD01051561;AGCD01051562;GBBH01118707;XM_005399625;XM_005399626;XM_005399628;XM_005399629;XM_005399630;XM_013522075;XM_013522076 XP_005399682;XP_005399683;XP_005399685;XP_005399686;XP_005399687;XP_013377529;XP_013377530 MODEL 8761605 protein-coding Cul2 cullin 2 ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin ligase complex scaffold activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN protein catabolic process (ortholog); ubiquitin-dependent protein catabolic process via the C-end degron rule pathway (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; neddylation pathway; proteasome degradation pathway involving cullin-dependent ubiquitin ligases; ASSOCIATED WITH inflammatory bowel disease (ortholog); FOUND IN Cul2-RING ubiquitin ligase complex (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955462 2580117 2659849 + 102019037 AGCD01049176;AGCD01049177;GBDI01222773;XM_005398124;XM_013521460;XM_013521461;XM_013521462 XP_005398181;XP_013376914;XP_013376915;XP_013376916 MODEL 39132421 snrna U6 U6 spliceosomal RNA 8877342 protein-coding Lrrc56 leucine rich repeat containing 56 ASSOCIATED WITH acute myeloid leukemia (ortholog); Beckwith-Wiedemann syndrome (ortholog); Breast Neoplasms (ortholog) NW_004955476 11493299 11507022 - 102017010 AGCD01055460;GBBH01165706;XM_013502922 XP_013358376 MODEL 8984107 pseudo LOC102022202 probable N-acetyltransferase CML1 NW_004955424 11918874 11919517 - 102022202 AGCD01024579 MODEL 8747759 protein-coding Ttc14 tetratricopeptide repeat domain 14 ASSOCIATED WITH Currarino syndrome (ortholog); Fibrous Sheath Dysplasia (ortholog); primary ciliary dyskinesia (ortholog) NW_004955420 9677626 9687008 + 102017666 AGCD01020761;GBCE01001619;XM_005383061 XP_005383118 MODEL 10190622 protein-coding LOC106150205 serine/arginine repetitive matrix protein 1-like NW_004955468 6445621 6446648 + 106150205 AGCD01051984;GBDJ01093569;GBDJ01093570;XM_013522297 XP_013377751 MODEL 9059176 protein-coding Disc1 DISC1 scaffold protein ENCODES a protein that exhibits identical protein binding (ortholog); kinesin binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); cell proliferation in forebrain (ortholog); cerebral cortex radially oriented cell migration (ortholog); ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); anxiety disorder (ortholog); Asperger syndrome (ortholog); FOUND IN axon (ortholog); cell body (ortholog); central region of growth cone (ortholog) NW_004955492 6946528 7239328 - 102005813 AGCD01060775;AGCD01060776;AGCD01060777;AGCD01060778;AGCD01060779;GBDK01247100;XM_013504736 XP_013360190 MODEL 39132723 snrna U6 U6 spliceosomal RNA 39132422 snrna U6 U6 spliceosomal RNA 9048275 protein-coding LOC102027701 vegetative cell wall protein gp1-like NW_004955402 34131415 34131735 - 102027701 AGCD01000851;XM_005373168 XP_005373225 MODEL 10254709 protein-coding LOC106148732 adenylate cyclase type 5-like NW_004955427 22596360 22597350 - 106148732 AGCD01027470;GBBH01126045;GBCE01021675;XM_013515191 XP_013370645 MODEL 8947230 protein-coding LOC102020595 olfactory receptor 1044 NW_004955511 1517014 1517973 + 102020595 AGCD01066370;XM_005408233 XP_005408290 MODEL 9053164 protein-coding Lrrc57 leucine rich repeat containing 57 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog) NW_004955416 9230362 9237799 - 102024005 AGCD01017080;AGCD01017081;GBDK01124064;XM_005381347;XM_005381348;XM_005381349 XP_005381404;XP_005381405;XP_005381406 MODEL 8954182 protein-coding Ube2c ubiquitin conjugating enzyme E2 C ENCODES a protein that exhibits ubiquitin conjugating enzyme activity (ortholog); ubiquitin-like protein ligase binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN anaphase-promoting complex-dependent catabolic process (ortholog); exit from mitosis (ortholog); free ubiquitin chain polymerization (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); Breast Neoplasms (ortholog); Chromosome Aberrations (ortholog); FOUND IN anaphase-promoting complex (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955445 11474826 11479479 - 102029133 AGCD01039696;GBCB01020523;XM_005392413;XM_013518340 XP_005392470;XP_013373794 MODEL 8890168 pseudo LOC102027300 translationally-controlled tumor protein pseudogene NW_004955416 10648108 10648744 + 102027300 AGCD01017150 MODEL 8748044 ncrna LOC102027702 uncharacterized LOC102027702 NW_004955403 8147712 8150447 - 102027702 AGCD01001869;GBDK01306094;XR_259162 MODEL 10180725 ncrna LOC106148733 uncharacterized LOC106148733 NW_004955427 22493032 22499890 + 106148733 AGCD01027468;GBDK01250191;XR_001234397 MODEL 8738742 protein-coding LOC102026233 melanoma-associated antigen 8-like NW_004955498 4377745 4382464 + 102026233 AGCD01062996;GBDF01162543;XM_005406411 XP_005406468 MODEL 8841362 protein-coding Vac14 VAC14 component of PIKFYVE complex ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of postsynaptic neurotransmitter receptor internalization (ortholog); PARTICIPATES IN inositol metabolic pathway; phosphoinositide metabolic pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); FOUND IN cytosol (ortholog); endosome membrane (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955484 3451187 3557471 - 102007017 AGCD01058182;GBDK01135175;XM_005403494 XP_005403551 MODEL 10355205 protein-coding LOC106149243 uncharacterized LOC106149243 NW_004955441 13676224 13697566 + 106149243 AGCD01037157;AGCD01037158;GBCB01069548;XM_013517517 XP_013372971 MODEL 8721617 pseudo LOC102003523 dimethylaniline monooxygenase [N-oxide-forming] 5-like NW_004955462 10251055 10272845 - 102003523 AGCD01049359;AGCD01049360 MODEL 8700891 protein-coding Nfkbia NFKB inhibitor alpha ENCODES a protein that exhibits enzyme binding (ortholog); heat shock protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); canonical NF-kappaB signal transduction (ortholog); cellular response to cytokine stimulus (ortholog); PARTICIPATES IN adenosine signaling pathway; ceramide signaling pathway; interleukin-23 signaling pathway; ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); Adenoviridae Infections (ortholog); alcoholic hepatitis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); I-kappaB/NF-kappaB complex (ortholog) NW_004955409 25691673 25695151 + 102029373 AGCD01010129;AGCD01010130;GBCE01000163;XM_005376922 XP_005376979 MODEL 8724348 protein-coding Selenot selenoprotein T ENCODES a protein that exhibits thioredoxin-disulfide reductase (NADPH) activity (ortholog); INVOLVED IN cell redox homeostasis (ortholog); cellular oxidant detoxification (ortholog); glucose homeostasis (ortholog); ASSOCIATED WITH glycogen storage disease XV (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955448 1794959 1814282 + 102025635 AGCD01041268;AGCD01041269;AGCD01041270;GBDF01082136;XM_013518685 XP_013374139 MODEL 8713287 protein-coding Krt18 keratin 18 ENCODES a protein that exhibits scaffold protein binding (ortholog); INVOLVED IN cholangiocyte apoptotic process (ortholog); extrinsic apoptotic signaling pathway (ortholog); Golgi to plasma membrane protein transport (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); Breast Neoplasms (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cell periphery (ortholog); centriolar satellite (ortholog); cytoplasm (ortholog) NW_004955458 227017 230752 + 102008919 AGCD01047113;GBCE01028708;XM_005397132;XM_005397133 XP_005397189;XP_005397190 MODEL 8916483 protein-coding Cand1 cullin associated and neddylation dissociated 1 ENCODES a protein that exhibits TBP-class protein binding (ortholog); INVOLVED IN cell differentiation (ortholog); negative regulation of catalytic activity (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN neddylation pathway; ASSOCIATED WITH mucopolysaccharidosis type IIID (ortholog); prostate cancer (ortholog); FOUND IN cullin-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955458 13815819 13850007 + 102026947 AGCD01047814;GBBH01119800;GBDF01281171;XM_005397463 XP_005397520 MODEL 10321395 protein-coding LOC106149244 uncharacterized LOC106149244 NW_004955441 14979326 14987199 + 106149244 AGCD01037236;AGCD01037237;GBDK01254120;XM_013517519 XP_013372973 MODEL 10177604 ncrna LOC106149539 uncharacterized LOC106149539 NW_004955448 4380584 4435503 + 106149539 AGCD01041344;AGCD01041345;GBCQ01143994;XR_001235793;XR_001235794 MODEL 8788817 pseudo LOC102027253 stannin-like NW_004955450 11997050 12000003 + 102027253 AGCD01042686 MODEL 8725206 protein-coding Lrrc30 leucine rich repeat containing 30 ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); intellectual disability (ortholog) NW_004955402 4174990 4178170 - 102004214 AGCD01000113;GBCB01044200;XM_005372621 XP_005372678 MODEL 9066730 protein-coding LOC102021873 olfactory receptor 52M1-like NW_004955414 20140566 20141519 - 102021873 AGCD01015358;XM_005380465 XP_005380522 MODEL 8815276 protein-coding Ythdf2 YTH N6-methyladenosine RNA binding protein F2 ENCODES a protein that exhibits C5-methylcytidine-containing RNA reader activity (ortholog); N6-methyladenosine-containing RNA reader activity (ortholog); INVOLVED IN gamete generation (ortholog); hematopoietic stem cell proliferation (ortholog); mRNA catabolic process (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN centriolar satellite (ortholog); cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog) NW_004955452 7783398 7815468 + 102020630 AGCD01044194;AGCD01044195;AGCD01044196;AGCD01044197;GBDF01119971;XM_013519715 XP_013375169 MODEL 8777237 protein-coding Prcd photoreceptor disc component ENCODES a protein that exhibits opsin binding (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); retinitis pigmentosa (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); extracellular region (ortholog) NW_004955506 5751963 5764767 - 102022411 AGCD01065386;GBDF01214040;XM_005407426;XM_013506079;XM_013506080 XP_005407483;XP_013361533;XP_013361534 MODEL 10114083 pseudo LOC106149245 tRNA-splicing ligase RtcB homolog pseudogene NW_004955441 15064198 15070035 + 106149245 AGCD01037241 MODEL 8797466 protein-coding Igf2 insulin like growth factor 2 ENCODES a protein that exhibits growth factor activity (ortholog); insulin receptor binding (ortholog); insulin-like growth factor receptor binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); cellular response to mechanical stimulus (ortholog); embryonic placenta development (ortholog); PARTICIPATES IN insulin-like growth factor signaling pathway; ASSOCIATED WITH acquired immunodeficiency syndrome (ortholog); adrenocortical carcinoma (ortholog); alcohol use disorder (ortholog); FOUND IN extracellular space (ortholog) NW_004955422 13880525 13907963 - 102005482 AGCD01022840;AGCD01022841;GBDK01090861;XM_005384193;XM_013514303;XM_013514304;XM_013514305 XP_005384250;XP_013369757;XP_013369758;XP_013369759 MODEL 8996182 protein-coding Znf597 zinc finger protein 597 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); ASSOCIATED WITH epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); Rubinstein-Taybi syndrome (ortholog) NW_004955442 13926675 13933490 + 102025398 AGCD01037795;AGCD01037796;GBDF01051224;XM_005391344;XM_005391346 XP_005391401;XP_005391403 MODEL 8960216 pseudo LOC102022783 structural maintenance of chromosomes protein 3-like NW_004955406 18987510 18993997 - 102022783 AGCD01006071 MODEL 8733916 pseudo LOC102027255 high mobility group protein B1 pseudogene NW_004955450 470106 481651 - 102027255 AGCD01042336;AGCD01042337;AGCD01042338 MODEL 9038855 protein-coding Nostrin nitric oxide synthase trafficking ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Stroke (ortholog); FOUND IN nucleus (ortholog) NW_004955449 5563212 5620337 - 102005325 AGCD01041942;GBDK01014815;GBDK01014951;XM_005393274 XP_005393331 MODEL 9058337 protein-coding LOC102027704 endogenous retrovirus group K member 25 Env polyprotein-like NW_004955613 302866 315575 - 102027704 AGCD01077215;AGCD01077216;AGCD01077217;GBDJ01390175;GBDJ01390177;XM_013510130 XP_013365584 MODEL 8751788 protein-coding Slc22a14 solute carrier family 22 member 14 ENCODES a protein that exhibits riboflavin transmembrane transporter activity (ortholog); INVOLVED IN flagellated sperm motility (ortholog); sperm capacitation (ortholog); ASSOCIATED WITH Brugada syndrome (ortholog); Immunodeficiency 68 (ortholog); visceral heterotaxy 4 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); sperm principal piece (ortholog) NW_004955421 5009560 5023833 - 102014789 AGCD01021710;GBDF01124260;XM_005383731;XM_005383732;XM_005383733;XM_005383734;XM_013513634 XP_005383788;XP_005383789;XP_005383790;XP_005383791;XP_013369088 MODEL 8794342 protein-coding Ythdf3 YTH N6-methyladenosine RNA binding protein F3 ENCODES a protein that exhibits N6-methyladenosine-containing RNA reader activity (ortholog); ribosome binding (ortholog); RNA binding (ortholog); INVOLVED IN mRNA destabilization (ortholog); negative regulation of type I interferon-mediated signaling pathway (ortholog); organelle assembly (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); P-body (ortholog) NW_004955444 15758596 15789979 - 102023642 AGCD01039150;GBCC01008759;XM_005392168;XM_005392169;XM_013518190 XP_005392225;XP_005392226;XP_013373644 MODEL 8971889 protein-coding Cul3 cullin 3 ENCODES a protein that exhibits cyclin binding (ortholog); identical protein binding (ortholog); Notch binding (ortholog); INVOLVED IN anaphase-promoting complex-dependent catabolic process (ortholog); cell migration (ortholog); cell morphogenesis (ortholog); PARTICIPATES IN nuclear factor, erythroid 2 like 2 signaling pathway; proteasome degradation pathway involving cullin-dependent ubiquitin ligases; Wnt signaling, canonical pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant pseudohypoaldosteronism type 1 (ortholog); developmental and epileptic encephalopathy 11 (ortholog); FOUND IN centrosome (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955453 9546554 9629976 + 102018560 AGCD01044772;AGCD01044773;AGCD01044774;GBBH01114512;GBCB01007204;XM_013519956 XP_013375410 MODEL 8939353 pseudo LOC102003534 stAR-related lipid transfer protein 4 pseudogene NW_004955474 6726759 6727385 + 102003534 AGCD01054486;XM_005401390 MODEL 39132423 snrna U6 U6 spliceosomal RNA 9042685 protein-coding LOC102022785 interferon-induced GTP-binding protein Mx1 NW_004955407 40884281 40906469 - 102022785 AGCD01007852;GBDK01080843;XM_005375852 XP_005375909 MODEL 8799637 pseudo LOC102028918 low molecular weight phosphotyrosine protein phosphatase pseudogene NW_004955449 263407 263882 + 102028918 AGCD01041762 MODEL 8910046 protein-coding LOC102027705 olfactory receptor 2T29-like NW_004955630 116435 117382 - 102027705 AGCD01077522;XM_005415035 XP_005415092 MODEL 8745539 protein-coding Krt2 keratin 2 ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); structural constituent of skin epidermis (ortholog); INVOLVED IN epidermis development (ortholog); intermediate filament organization (ortholog); keratinization (ortholog); ASSOCIATED WITH bullous congenital ichthyosiform erythroderma (ortholog); contact dermatitis (ortholog); genetic disease (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955547 3027767 3035244 - 102013452 AGCD01072303;GBCC01000255;XM_005411955 XP_005412012 MODEL 8838993 protein-coding Scarb2 scavenger receptor class B member 2 ENCODES a protein that exhibits cargo receptor activity (ortholog); cholesterol binding (ortholog); enzyme binding (ortholog); INVOLVED IN aminophospholipid transport (ortholog); endosome to plasma membrane protein transport (ortholog); positive regulation of neuron projection development (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); COVID-19 (ortholog); focal segmental glomerulosclerosis (ortholog); FOUND IN endocytic vesicle membrane (ortholog); lysosomal lumen (ortholog); lysosomal membrane (ortholog) NW_004955433 884740 962932 - 102013442 AGCD01031339;AGCD01031340;GBCB01002351;GBCE01029601;XM_005388182 XP_005388239 MODEL 9061999 ncrna LOC102005032 uncharacterized LOC102005032 NW_004955414 25971218 25973185 - 102005032 AGCD01015636;GBCE01175775;XR_260196 MODEL 8954432 protein-coding Rpe65 retinoid isomerohydrolase RPE65 ENCODES a protein that exhibits all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity (ortholog); all-trans-retinyl-palmitate hydrolase, 11-cis retinol forming activity (ortholog); isomerase activity (ortholog); INVOLVED IN camera-type eye development (ortholog); circadian rhythm (ortholog); detection of light stimulus involved in visual perception (ortholog); PARTICIPATES IN altered retinoid cycle metabolic pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH adrenocorticotropic hormone deficiency (ortholog); autistic disorder (ortholog); basal cell carcinoma (ortholog); FOUND IN cell body (ortholog); cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955423 23184326 23208206 + 102012870 AGCD01023995;GBDF01013721;XM_005385268 XP_005385325 MODEL 8830743 protein-coding Gramd2b GRAM domain containing 2B ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasmic microtubule (ortholog) NW_004955521 4220325 4320452 + 102017267 AGCD01068256;AGCD01068257;AGCD01068258;AGCD01068259;GBDK01284185;XM_005409323;XM_005409325;XM_013507088;XM_013507089 XP_005409380;XP_005409382;XP_013362542;XP_013362543 MODEL 8892792 pseudo LOC102021874 transmembrane protein 50A pseudogene NW_004955415 9946775 9947256 - 102021874 AGCD01016117;XM_005380691 MODEL 8832749 pseudo LOC102028921 nucleobindin-2-like NW_004955450 3336243 3338400 + 102028921 AGCD01042429 MODEL 8786729 pseudo LOC102024823 atlastin-2 pseudogene NW_004955505 4245501 4247638 + 102024823 AGCD01065095 MODEL 8798179 pseudo LOC102005033 COMM domain-containing protein 2 pseudogene NW_004955414 29282270 29282913 - 102005033 AGCD01015702 MODEL 9056018 protein-coding Prcp prolylcarboxypeptidase ENCODES a protein that exhibits metallocarboxypeptidase activity (ortholog); INVOLVED IN angiogenesis involved in wound healing (ortholog); angiotensin maturation (ortholog); energy homeostasis (ortholog); PARTICIPATES IN kallikrein-kinin cascade pathway; ASSOCIATED WITH brain infarction (ortholog); intellectual disability (ortholog); FOUND IN basal part of cell (ortholog); extracellular region (ortholog); intracellular membrane-bounded organelle (ortholog) NW_004955414 9631223 9700537 + 102029731 AGCD01015031;GBDJ01083554;XM_005379809 XP_005379866 MODEL 8992109 ncrna LOC102027261 uncharacterized LOC102027261 NW_004955404 6171927 6176957 - 102027261 AGCD01003315;GBDF01305079;XR_259298 MODEL 8730539 protein-coding Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); mRNA binding (ortholog); INVOLVED IN CRD-mediated mRNA stabilization (ortholog); dendrite arborization (ortholog); negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); colon adenoma (ortholog); Experimental Neoplasms (ortholog); FOUND IN axon (ortholog); CRD-mediated mRNA stability complex (ortholog); cytoplasm (ortholog) NW_004955451 12312715 12348663 - 102028366 AGCD01043385;AGCD01043386;GBDF01076205;XM_005394222;XM_005394223 XP_005394279;XP_005394280 MODEL 8896720 protein-coding LOC102022204 transmembrane protein 45A-like NW_004955427 2117389 2212016 + 102022204 AGCD01026892;AGCD01026893;AGCD01026894;GBCE01065125;XM_005386298;XM_005386299;XM_005386300;XM_005386301;XM_013515224;XM_013515225 XP_005386355;XP_005386356;XP_005386357;XP_005386358;XP_013370678;XP_013370679 MODEL 9050290 protein-coding Tbc1d15 TBC1 domain family member 15 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN regulation of cilium assembly (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog) NW_004955405 11821601 11876133 + 102005002 AGCD01004844;GBDF01158753;XM_005374322;XM_005374323;XM_013517636 XP_005374379;XP_005374380;XP_013373090 MODEL 10063767 ncrna LOC106147268 uncharacterized LOC106147268 NW_004955537 1799590 1801637 - 106147268 AGCD01070905;GBDJ01380106;XR_001232082 MODEL 9028218 protein-coding LOC102012951 olfactory receptor 52N2 NW_004955414 21777014 21940262 - 102012951 AGCD01015432;AGCD01015433;AGCD01015434;AGCD01015435;AGCD01015436;AGCD01015437;AGCD01015438;GBDF01075977;XM_005380109;XM_005380110;XM_005380111;XM_005380112;XM_013511697 XP_005380166;XP_005380167;XP_005380168;XP_005380169;XP_013367151 MODEL 8898293 protein-coding Disp1 dispatched RND transporter family member 1 ENCODES a protein that exhibits molecular carrier activity (ortholog); INVOLVED IN determination of left/right symmetry (ortholog); diaphragm development (ortholog); dorsal/ventral pattern formation (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH esophageal atresia (ortholog); gastrointestinal stromal tumor (ortholog); holoprosencephaly (ortholog) NW_004955520 1591831 1711871 - 102014480 AGCD01068059;AGCD01068060;GBDF01195981;XM_005409242;XM_005409243;XM_005409244;XM_005409246;XM_013507055;XM_013507056 XP_005409299;XP_005409300;XP_005409301;XP_005409303;XP_013362509;XP_013362510 MODEL 8735823 ncrna LOC102017298 uncharacterized LOC102017298 NW_004955405 17228378 17321976 + 102017298 AGCD01004987;AGCD01004988;AGCD01004989;AGCD01004990;AGCD01004991;AGCD01004992;GBDI01384696;XR_001235388;XR_001235389;XR_001235390;XR_001235391;XR_001235392;XR_001235393;XR_259384 MODEL 10177612 ncrna LOC106149541 uncharacterized LOC106149541 NW_004955448 10407924 10416337 + 106149541 AGCD01041491;GBDJ01250953;XR_001235795 MODEL 9005360 protein-coding LOC102005034 cyclin-dependent kinase inhibitor 2A-like NW_004955472 12312045 12318961 + 102005034 AGCD01053794;GBBH01193886;XM_005401166 XP_005401223 MODEL 8702549 ncrna LOC102020599 uncharacterized LOC102020599 NW_004955515 3783964 3807130 - 102020599 AGCD01067303;AGCD01067304;AGCD01067305;GBDF01304550;XR_264524 MODEL 8730876 protein-coding Cul4a cullin 4A ENCODES a protein that exhibits ubiquitin ligase complex scaffold activity (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to UV (ortholog); DNA damage response (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); factor X deficiency (ortholog); Stevens-Johnson syndrome (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (ortholog); Cul4A-RING E3 ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955404 583261 617914 - 102014001 AGCD01003203;AGCD01003204;GBDK01143401;XM_013515570 XP_013371024 MODEL 8891083 protein-coding Lctl lactase like INVOLVED IN lens morphogenesis in camera-type eye (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN brush border (ortholog); endoplasmic reticulum (ortholog) NW_004955450 9127151 9139836 + 102028042 AGCD01042585;GBBH01100376;XM_005393699 XP_005393756 MODEL 8842280 protein-coding Vwa3a von Willebrand factor A domain containing 3A ASSOCIATED WITH autistic disorder (ortholog); chromosome 16p12.1 deletion syndrome (ortholog); schizophrenia (ortholog) NW_004955493 780808 829768 + 102009069 AGCD01060864;AGCD01060865;GBBH01001724;XM_005405057;XM_005405058;XM_005405059;XM_005405060;XM_005405061;XM_005405062;XM_005405063;XM_005405064;XM_013504833;XM_013504834;XM_013504836;XM_013504837;XM_013504838;XM_013504840;XR_001231282;XR_264065;XR_264066;XR_264067;XR_264068;XR_264069;XR_264070 XP_005405114;XP_005405115;XP_005405116;XP_005405117;XP_005405118;XP_005405119;XP_005405120;XP_005405121;XP_013360287;XP_013360288;XP_013360290;XP_013360291;XP_013360292;XP_013360294 MODEL 10279576 protein-coding LOC106149246 translation initiation factor IF-2-like NW_004955441 15070741 15075333 - 106149246 AGCD01037241;AGCD01037242;GBDK01374228;XM_013517521 XP_013372975 MODEL 8957110 protein-coding Mgrn1 mahogunin ring finger 1 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN endosome to lysosome transport (ortholog); heart development (ortholog); negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN melanocortin system pathway; ASSOCIATED WITH epilepsy (ortholog); hyperglycemia (ortholog); hyperinsulinism (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); endoplasmic reticulum (ortholog) NW_004955442 12780795 12823716 - 102006716 AGCD01037745;AGCD01037746;GBBH01001505;GBCB01040906;XM_005391278 XP_005391335 MODEL 8963478 protein-coding LOC102016261 olfactory receptor 10T2-like NW_004955414 23540528 23541493 + 102016261 AGCD01015501;XM_005380519 XP_005380576 MODEL 9017015 pseudo LOC102004640 coiled-coil domain-containing protein 94 pseudogene NW_004955532 391528 392376 + 102004640 AGCD01070116 MODEL 8879203 protein-coding Ttc16 tetratricopeptide repeat domain 16 ASSOCIATED WITH congenital disorder of glycosylation Iu (ortholog); developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog) NW_004955419 926561 940368 - 102028539 AGCD01019623;AGCD01019624;GBCE01008925;XM_005382418;XM_013513206;XM_013513208;XM_013513209;XM_013513210;XM_013513211;XM_013513212 XP_005382475;XP_013368660;XP_013368662;XP_013368663;XP_013368664;XP_013368665;XP_013368666 MODEL 8856605 ncrna LOC102028926 uncharacterized LOC102028926 NW_004955404 36181612 36212906 + 102028926 AGCD01004154;AGCD01004155;GBDF01046469;XR_259333 MODEL 8723544 pseudo LOC102016269 tigger transposable element-derived protein 1-like NW_004955417 13872785 13876028 + 102016269 AGCD01018191 MODEL 8978866 pseudo LOC102024826 cyclin-G2 pseudogene NW_004955506 3125948 3126937 - 102024826 AGCD01065313 MODEL 8739315 protein-coding LOC102004343 general transcription factor II-I repeat domain-containing protein 1-like NW_004955402 7011600 7036323 - 102004343 AGCD01000164;AGCD01000165;GBDJ01109813;XM_005373133 XP_005373190 MODEL 8733413 protein-coding Notch1 notch receptor 1 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); aortic valve morphogenesis (ortholog); apoptotic process (ortholog); PARTICIPATES IN altered Notch signaling pathway involving the main players; Notch signaling pathway; Notch signaling pathway; ASSOCIATED WITH Adams-Oliver syndrome (ortholog); Adams-Oliver Syndrome 2 (ortholog); Adams-Oliver Syndrome 5 (ortholog); FOUND IN acrosomal vesicle (ortholog); adherens junction (ortholog); apical plasma membrane (ortholog) NW_004955513 4225939 4264875 + 102004959 AGCD01066924;GBBH01006921;XM_013506704 XP_013362158 MODEL 8890981 protein-coding Tnrc6a trinucleotide repeat containing adaptor 6A INVOLVED IN cellular response to starvation (ortholog); endoderm development (ortholog); miRNA-mediated gene silencing by inhibition of translation (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH familial adult myoclonic epilepsy 6 (ortholog); Myoclonic Epilepsies (ortholog); FOUND IN Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog) NW_004955493 3057035 3243668 + 102025809 AGCD01060978;AGCD01060979;AGCD01060980;AGCD01060981;AGCD01060982;AGCD01060983;GBDF01014716;XM_005405109;XM_005405110;XM_005405111;XM_013504798;XM_013504799;XM_013504800;XM_013504801;XM_013504802;XM_013504803 XP_005405166;XP_005405167;XP_005405168;XP_013360252;XP_013360253;XP_013360254;XP_013360255;XP_013360256;XP_013360257 MODEL 39132425 snrna U6 U6 spliceosomal RNA 8814827 ncrna LOC102003538 uncharacterized LOC102003538 NW_004955476 203227 208111 + 102003538 AGCD01055192;GBDI01270308;XR_263615 MODEL 8944780 protein-coding Tbc1d16 TBC1 domain family member 16 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN regulation of cilium assembly (ortholog); regulation of receptor recycling (ortholog); ASSOCIATED WITH Idiopathic Generalized Epilepsy (ortholog); pityriasis rubra pilaris (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog) NW_004955506 2840682 2925010 + 102021783 AGCD01065301;AGCD01065302;AGCD01065303;AGCD01065304;AGCD01065305;GBDF01181391;XM_005407331;XM_005407332;XM_005407333;XM_005407334;XM_005407335 XP_005407388;XP_005407389;XP_005407390;XP_005407391;XP_005407392 MODEL 8817610 protein-coding LOC102027304 40S ribosomal protein SA-like NW_004955418 14071653 14086076 + 102027304 AGCD01019063;XM_013512876 XP_013368330 MODEL 8896866 pseudo LOC102027706 ataxin-3-like NW_004955738 517 24651 + 102027706 AGCD01078240 MODEL 39132426 snrna U6 U6 spliceosomal RNA 9009913 pseudo LOC102020600 schwannomin-interacting protein 1 pseudogene NW_004955432 22769942 22770616 - 102020600 AGCD01031266 MODEL 8724376 protein-coding LOC102026235 chromosome unknown open reading frame, human C12orf54 NW_004955500 7358057 7376070 + 102026235 AGCD01063916;AGCD01063917;GBDF01008304;XM_013505649;XM_013505650;XM_013505651 XP_013361103;XP_013361104;XP_013361105 MODEL 8971006 protein-coding Vamp1 vesicle associated membrane protein 1 ASSOCIATED WITH congenital myasthenic syndrome (ortholog); Congenital Myasthenic Syndrome 25 (ortholog); genetic disease (ortholog); FOUND IN azurophil granule membrane (ortholog); cytosol (ortholog); presynapse (ortholog) NW_004955413 4117367 4124149 - 102018704 AGCD01013600;GBDK01014806;XM_005378782 XP_005378839 MODEL 8891956 protein-coding Scarf1 scavenger receptor class F member 1 ENCODES a protein that exhibits low-density lipoprotein particle binding (ortholog); scavenger receptor activity (ortholog); INVOLVED IN dendrite development (ortholog); neuron remodeling (ortholog); positive regulation of axon regeneration (ortholog); FOUND IN membrane (ortholog) NW_004955481 1534894 1547427 + 102018286 AGCD01056835;GBCB01022149;XM_005402613 XP_005402670 MODEL 8997774 protein-coding Tbc1d17 TBC1 domain family member 17 INVOLVED IN regulation of cilium assembly (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); FOUND IN cytosol (ortholog) NW_004955559 1047389 1055891 - 102028138 AGCD01073626;AGCD01073627;GBBH01033249;GBDI01128720;XM_013508953 XP_013364407 MODEL 9013977 protein-coding Nfkbib NFKB inhibitor beta INVOLVED IN cellular response to lipopolysaccharide (ortholog); inflammatory response (ortholog); regulation of canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN nuclear factor kappa B signaling pathway; ASSOCIATED WITH maturity-onset diabetes of the young type 1 (ortholog); type 2 diabetes mellitus (ortholog) NW_004955468 617078 626151 - 102007324 AGCD01051719;GBBH01119031;XM_005399822 XP_005399879 MODEL 8819142 protein-coding LOC102027307 chymotrypsinogen B NW_004955484 2360277 2370518 + 102027307 AGCD01058111;AGCD01058112;AGCD01058113;GBDF01165322;XM_013503853 XP_013359307 MODEL 8913825 protein-coding Cul4b cullin 4B ENCODES a protein that exhibits damaged DNA binding (ortholog); INVOLVED IN astrocyte differentiation (ortholog); gene expression (ortholog); neuron projection development (ortholog); ASSOCIATED WITH Asthenozoospermia (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (ortholog); Cul4A-RING E3 ubiquitin ligase complex (ortholog); Cul4B-RING E3 ubiquitin ligase complex (ortholog) NW_004955572 1308491 1365147 + 102003816 AGCD01074949;GBDF01160515;XM_005413656;XM_005413657;XM_005413658;XM_005413659;XM_013509444 XP_005413713;XP_005413714;XP_005413715;XP_005413716;XP_013364898 MODEL 39132427 snrna U6 U6 spliceosomal RNA 8829047 ncrna LOC102020601 uncharacterized LOC102020601 NW_004955524 1966728 1975410 + 102020601 AGCD01068789;GBDJ01164716;XR_001231956 MODEL 10147460 ncrna LOC106149686 uncharacterized LOC106149686 NW_004955452 4676345 4686479 + 106149686 AGCD01043988;GBDK01173138;XR_001236013 MODEL 8958292 protein-coding LOC102026243 pulmonary surfactant-associated protein A NW_004955510 256568 260747 - 102026243 AGCD01066144;GBDK01092988;XM_005407868 XP_005407925 MODEL 8704246 protein-coding Siglec5 sialic acid binding Ig like lectin 5 ENCODES a protein that exhibits monosaccharide binding (ortholog); sialic acid binding (ortholog); INVOLVED IN regulation of endocytosis (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN lysosome (ortholog) NW_004955558 932981 945623 + 102005310 AGCD01073406;AGCD01073407;GBBH01003474;GBDF01009380;XM_013508882 XP_013364336 MODEL 10223544 ncrna LOC106147269 uncharacterized LOC106147269 NW_004955408 28942489 28944582 + 106147269 AGCD01008734;GBDF01266501;XR_001232083 MODEL 39132429 snrna U6 U6 spliceosomal RNA 8717872 protein-coding LOC102012953 olfactory receptor 491-like NW_004955414 23663348 23664286 - 102012953 AGCD01015514;XM_013511761 XP_013367215 MODEL 8813649 protein-coding Scarf2 scavenger receptor class F member 2 ENCODES a protein that exhibits scavenger receptor activity (ortholog); INVOLVED IN heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 22q11.2 deletion syndrome, distal (ortholog) NW_004955442 18995253 19006499 - 102018441 AGCD01038028;AGCD01038029;GBBH01117350;GBDI01256676;XM_013517989 XP_013373443 MODEL 8946261 protein-coding LOC102005035 ATP-binding cassette sub-family C member 11 NW_004955474 7090746 7169568 + 102005035 AGCD01054513;AGCD01054514;AGCD01054515;XM_013502712 XP_013358166 MODEL 10170951 protein-coding LOC106148734 translation initiation factor IF-2-like NW_004955427 3346712 3348321 - 106148734 AGCD01026935;GBCE01040773;GBDJ01031353;XM_013515205 XP_013370659 MODEL 8975871 protein-coding Garin1a golgi associated RAB2 interactor 1A INVOLVED IN acrosome assembly (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955479 9476510 9487041 + 102027408 AGCD01056473;AGCD01056474;GBDF01006040;XM_005402376 XP_005402433 MODEL 8948357 protein-coding Notch2 notch receptor 2 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); enzyme binding (ortholog); INVOLVED IN activation of protein kinase B activity (ortholog); animal organ morphogenesis (ortholog); atrial septum morphogenesis (ortholog); PARTICIPATES IN Notch signaling pathway; Notch signaling pathway; ASSOCIATED WITH Acroosteolysis Dominant Type (ortholog); Alagille syndrome (ortholog); ALAGILLE SYNDROME 2 (ortholog); FOUND IN cell surface (ortholog); cilium (ortholog); glutamatergic synapse (ortholog) NW_004955568 1660357 1812285 + 102019215 AGCD01074550;AGCD01074551;AGCD01074552;AGCD01074553;GBDF01221197;XM_005413481;XM_013509349;XM_013509350 XP_005413538;XP_013364803;XP_013364804 MODEL 39133384 snrna U2 U2 spliceosomal RNA 39132431 snrna U6 U6 spliceosomal RNA 9005468 protein-coding Znf598 zinc finger protein 598, E3 ubiquitin ligase ENCODES a protein that exhibits protein-RNA adaptor activity (ortholog); ribosome binding (ortholog); stalled ribosome sensor activity (ortholog); INVOLVED IN negative regulation of translational initiation (ortholog); protein K63-linked ubiquitination (ortholog); protein monoubiquitination (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); Idiopathic Generalized Epilepsy (ortholog); FOUND IN cytosol (ortholog); cytosolic ribosome (ortholog) NW_004955442 15253649 15265420 + 102009112 AGCD01037861;GBDK01237488;XM_005391478;XM_005391479;XM_013517905 XP_005391535;XP_005391536;XP_013373359 MODEL 8706312 protein-coding LOC102027707 keratin, type I cuticular Ha3-I-like NW_004955451 15735490 15740410 - 102027707 AGCD01043635;AGCD01043636;GBCB01128392;XM_005394396 XP_005394453 MODEL 8930116 protein-coding Tgm3 transglutaminase 3 ENCODES a protein that exhibits calcium ion binding (ortholog); catalytic activity (ortholog); protein-glutamine gamma-glutamyltransferase activity (ortholog); INVOLVED IN keratinocyte differentiation (ortholog); peptide cross-linking (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Huntington's disease-like 1 (ortholog); pantothenate kinase-associated neurodegeneration (ortholog); FOUND IN cytoplasm (ortholog); extrinsic component of cytoplasmic side of plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955415 13391857 13435342 + 102014351 AGCD01016247;AGCD01016248;AGCD01016249;GBDI01257144;XM_005380750 XP_005380807 MODEL 39132432 snrna U6 U6 spliceosomal RNA 8733781 protein-coding Ywhab tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta ENCODES a protein that exhibits enzyme binding (ortholog); histone deacetylase binding (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of G protein-coupled receptor signaling pathway (ortholog); negative regulation of protein import into nucleus (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; mTOR signaling pathway; phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH adenosine deaminase deficiency (ortholog); brain ischemia (ortholog); Experimental Seizures (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955445 12451644 12474251 - 102015467 AGCD01039751;GBDF01121283;XM_005392462 XP_005392519 MODEL 10208797 protein-coding Znf599 zinc finger protein 599 ASSOCIATED WITH hereditary spastic paraplegia 75 (ortholog) NW_004955468 4222325 4233189 - 106150222 AGCD01051899;GBBH01074876;XM_013522374 XP_013377828 MODEL 39132433 snrna U6 U6 spliceosomal RNA 8726162 protein-coding Notch3 notch receptor 3 ENCODES a protein that exhibits enzyme binding (ortholog); identical protein binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN artery morphogenesis (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); forebrain development (ortholog); PARTICIPATES IN altered Notch signaling pathway involving the main players; CADASIL pathway; Notch signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); Auditory Neuropathy (ortholog); autism spectrum disorder (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955495 8012370 8048616 + 102010599 AGCD01062175;AGCD01062176;AGCD01062177;GBBH01119449;GBDK01129547;XM_013505128 XP_013360582 MODEL 8912073 protein-coding Disp2 dispatched RND transporter family member 2 ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog) NW_004955416 7282048 7297896 + 102019166 AGCD01016971;GBDF01021438;XM_005381233 XP_005381290 MODEL 8875480 protein-coding Tgm4 transglutaminase 4 INVOLVED IN mating plug formation (ortholog); ASSOCIATED WITH essential tremor (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); cytoplasm (ortholog); Golgi apparatus (ortholog) NW_004955420 26736880 26766386 - 102010493 AGCD01021427;AGCD01021428;AGCD01021429;AGCD01021430;GBDI01171952;GBDJ01424037;XM_005383619 XP_005383676 MODEL 10362900 ncrna LOC106149687 uncharacterized LOC106149687 NW_004955452 8963201 8988585 + 106149687 AGCD01044229;GBDJ01170281;XR_001236015 MODEL 8848229 protein-coding Siglecl1 SIGLEC family like 1 ASSOCIATED WITH multiple acyl-CoA dehydrogenase deficiency (ortholog) NW_004955558 1101532 1116578 - 102014502 AGCD01073415;AGCD01073416;GBDF01190924;GBDF01190934;XM_013508840 XP_013364294 MODEL 9021807 protein-coding Rpf1 ribosome production factor 1 homolog ENCODES a protein that exhibits RNA binding (ortholog); FOUND IN nucleolus (ortholog) NW_004955423 9394780 9412001 - 102003036 AGCD01023658;GBDK01345208;XM_005385160;XM_013514435 XP_005385217;XP_013369889 MODEL 10067478 ncrna LOC106147271 uncharacterized LOC106147271 NW_004955537 441598 448010 + 106147271 AGCD01070865;GBDK01041613;XR_001232084 MODEL 39132434 snrna U6 U6 spliceosomal RNA 9013611 ncrna LOC102021878 uncharacterized LOC102021878 NW_004955418 1272614 1293248 - 102021878 AGCD01018714;GBDF01122696;XR_260535 MODEL 8872496 protein-coding Esyt1 extended synaptotagmin 1 ENCODES a protein that exhibits identical protein binding (ortholog); phospholipid transfer activity (ortholog); INVOLVED IN intermembrane lipid transfer (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955458 3732968 3746856 + 102026723 AGCD01047340;AGCD01047341;AGCD01047342;GBCQ01033561;GBDK01346750;XM_013520965 XP_013376419 MODEL 8969956 protein-coding Notch4 notch receptor 4 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); Notch binding (ortholog); INVOLVED IN branching involved in blood vessel morphogenesis (ortholog); endothelial cell differentiation (ortholog); endothelial cell morphogenesis (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH AIDS-Associated Nephropathy (ortholog); alopecia areata (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN cell surface (ortholog); cytoplasmic vesicle (ortholog); endoplasmic reticulum (ortholog) NW_004955437 658076 679338 - 102006391 AGCD01034153;AGCD01034154;GBBH01222284;GBDK01139069;XM_013517066 XP_013372520 MODEL 8883708 protein-coding Mgst1 microsomal glutathione S-transferase 1 ENCODES a protein that exhibits glutathione binding (ortholog); glutathione peroxidase activity (ortholog); glutathione transferase activity (ortholog); INVOLVED IN cellular response to lipid hydroperoxide (ortholog); glutathione metabolic process (ortholog); glutathione transport (ortholog); ASSOCIATED WITH chronic obstructive pulmonary disease (ortholog); COVID-19 (ortholog); neurodegenerative disease (ortholog); FOUND IN apical part of cell (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955413 12989935 13005203 + 102007643 AGCD01014005;AGCD01014006;GBDI01372636;XM_005379025 XP_005379082 MODEL 8994620 protein-coding Garin1b golgi associated RAB2 interactor 1B INVOLVED IN acrosome assembly (ortholog); acrosome reaction (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955479 9511366 9536986 + 102027975 AGCD01056475;AGCD01056476;AGCD01056477;AGCD01056478;AGCD01056479;GBDF01046252;XM_005402377;XM_005402378 XP_005402434;XP_005402435 MODEL 9057440 protein-coding LOC102022788 olfactory receptor 6C4-like NW_004955458 2911101 2912036 - 102022788 AGCD01047255;XM_005397504 XP_005397561 MODEL 8783708 protein-coding Tbc1d19 TBC1 domain family member 19 INVOLVED IN regulation of cilium assembly (ortholog) NW_004955443 18522167 18645849 - 102016759 AGCD01038599;AGCD01038600;AGCD01038601;AGCD01038602;AGCD01038603;AGCD01038604;GBBH01077392;XM_005392027;XM_013518111;XM_013518112;XM_013518113 XP_005392084;XP_013373565;XP_013373566;XP_013373567 MODEL 8891940 protein-coding LOC102004346 ADP/ATP translocase 3-like NW_004956002 67 3761 + 102004346 AGCD01078844;AGCD01078845;GBCC01015784;GBDJ01370059;XM_013510213 XP_013365667 MODEL 9007841 protein-coding Lrrc32 leucine rich repeat containing 32 ENCODES a protein that exhibits receptor ligand inhibitor activity (ortholog); transforming growth factor beta binding (ortholog); INVOLVED IN establishment of protein localization to extracellular region (ortholog); negative regulation of activated T cell proliferation (ortholog); negative regulation of cytokine production (ortholog); ASSOCIATED WITH Cleft Palate, Proliferative Retinopathy, and Developmental Delay (ortholog); Developmental Disabilities (ortholog); intellectual disability (ortholog); FOUND IN cell surface (ortholog); nucleoplasm (ortholog) NW_004955414 15296704 15309088 + 102014441 AGCD01015182;GBBH01168987;XM_005379850;XM_005379851;XM_005379852;XM_005379853;XM_013512077 XP_005379907;XP_005379908;XP_005379909;XP_005379910;XP_013367531 MODEL 9066947 protein-coding Ube2d1 ubiquitin conjugating enzyme E2 D1 ENCODES a protein that exhibits ubiquitin conjugating enzyme activity (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN negative regulation of TORC1 signaling (ortholog); positive regulation of protein polyubiquitination (ortholog); positive regulation of protein ubiquitination (ortholog); PARTICIPATES IN p53 signaling pathway; FOUND IN cytoplasm (ortholog); protein-containing complex (ortholog) NW_004955425 12073267 12090613 + 102009520 AGCD01025499;GBCB01000993;XM_005385913 XP_005385970 MODEL 9054450 protein-coding LOC102020603 zinc finger protein 791-like NW_004955524 105801 127235 + 102020603 AGCD01068664;AGCD01068665;GBCQ01143020;XM_013507338;XM_013507339;XM_013507340 XP_013362792;XP_013362793;XP_013362794 MODEL 10162655 protein-coding LOC106150206 olfactory receptor 10R2 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog) NW_004955468 10349436 10358714 + 106150206 AGCD01052080;AGCD01052081;XM_013522298 XP_013377752 MODEL 8720678 protein-coding LOC102022790 cytohesin-3 NW_004955460 13486286 13490486 + 102022790 AGCD01048690;GBCE01032925;XM_005397893 XP_005397950 MODEL 8979990 protein-coding Mgst2 microsomal glutathione S-transferase 2 ENCODES a protein that exhibits glutathione binding (ortholog); glutathione peroxidase activity (ortholog); glutathione transferase activity (ortholog); INVOLVED IN glutathione biosynthetic process (ortholog); leukotriene biosynthetic process (ortholog); lipid metabolic process (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955428 4006054 4049497 - 102016179 AGCD01027663;AGCD01027664;AGCD01027665;GBCE01125801;XM_005386681;XM_005386682;XM_005386685;XM_005386686;XM_013515296;XM_013515297;XM_013515298;XM_013515299 XP_005386738;XP_005386739;XP_005386742;XP_005386743;XP_013370750;XP_013370751;XP_013370752;XP_013370753 MODEL 39132724 snrna U6 U6 spliceosomal RNA 8997029 pseudo LOC102004350 protein artemis pseudogene NW_004955406 36605973 36608435 + 102004350 AGCD01006559 MODEL 39132262 snrna U6 U6 spliceosomal RNA 9032164 ncrna LOC102005036 uncharacterized LOC102005036 NW_004955416 8146068 8156513 + 102005036 AGCD01017033;AGCD01017034;GBCQ01153475;XR_001233315;XR_260366 MODEL 9006213 protein-coding Disp3 dispatched RND transporter family member 3 INVOLVED IN negative regulation of neuron differentiation (ortholog); positive regulation of lipid metabolic process (ortholog); positive regulation of neural precursor cell proliferation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); chromosome 1p36 deletion syndrome (ortholog); Familial Atrial Fibrillation 6 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955486 2290413 2335193 - 102010164 AGCD01058995;GBDJ01220566;XM_005404001 XP_005404058 MODEL 10353909 ncrna LOC106149247 uncharacterized LOC106149247 NW_004955441 16088699 16098389 - 106149247 AGCD01037264;AGCD01037265;GBDF01103110;XR_001235295 MODEL 10099478 ncrna LOC106148735 uncharacterized LOC106148735 NW_004955427 25572344 25575915 - 106148735 AGCD01027545;GBDF01044801;XR_001234398 MODEL 8823033 pseudo LOC102027263 60S ribosomal protein L12-like NW_004955404 36765675 36766264 - 102027263 AGCD01004183 MODEL 8756335 protein-coding Cand2 cullin associated and neddylation dissociated 2 (putative) ENCODES a protein that exhibits TBP-class protein binding (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Familial Cerebral Cavernous Malformation (ortholog); Postoperative Atrial Fibrillation (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955429 17891306 17913961 - 102016733 AGCD01028869;GBCB01000872;XM_013515513;XM_013515514;XM_013515515 XP_013370967;XP_013370968;XP_013370969 MODEL 8778606 protein-coding LOC102022209 olfactory receptor 5M9-like NW_004955511 1619937 1620869 - 102022209 AGCD01066376;XM_005408238 XP_005408295 MODEL 39132435 snrna U6 U6 spliceosomal RNA 8855704 ncrna LOC102023148 uncharacterized LOC102023148 NW_004955477 9694302 9699057 - 102023148 AGCD01055683;GBDF01223626;XR_001230830;XR_001230831;XR_001230832 MODEL 8991423 pseudo LOC102005039 R-spondin-3 pseudogene NW_004955479 254149 254962 + 102005039 AGCD01056180 MODEL 39133157 snrna U6 U6 spliceosomal RNA 8946494 protein-coding Nsmce4a NSE4 homolog A, SMC5-SMC6 complex component INVOLVED IN DNA damage response (ortholog); ASSOCIATED WITH 2-Methylbutyryl-CoA Dehydrogenase Deficiency (ortholog); craniosynostosis (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); Smc5-Smc6 complex (ortholog) NW_004955477 300467 312110 - 102015511 AGCD01055485;GBDK01192031;XM_005401917 XP_005401974 MODEL 9048870 protein-coding Noto notochord homeobox ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN determination of left/right symmetry (ortholog); dorsal/ventral pattern formation (ortholog); embryonic pattern specification (ortholog); ASSOCIATED WITH Alstrom syndrome (ortholog); congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog) NW_004955424 12424984 12431562 - 102022831 AGCD01024605;AGCD01024606;GBDF01002305;XM_005385807 XP_005385864 MODEL 8876659 protein-coding LOC102016277 ubiquitin carboxyl-terminal hydrolase 17-like protein 6 NW_004955487 138278 141472 - 102016277 AGCD01059208;XM_013504334 XP_013359788 MODEL 9006095 protein-coding Esyt2 extended synaptotagmin 2 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); identical protein binding (ortholog); ASSOCIATED WITH autistic disorder (ortholog); schizophrenia (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955579 971556 1052575 - 102006404 AGCD01075561;AGCD01075562;AGCD01075563;AGCD01075564;GBDJ01073043;XM_013509669 XP_013365123 MODEL 10279202 ncrna LOC106149542 uncharacterized LOC106149542 NW_004955448 10128781 10133532 + 106149542 AGCD01041487;GBDF01122831;XR_001235796 MODEL 150537105 scarna SCARNA1 small Cajal body-specific RNA 1 8860198 pseudo LOC102012954 SAP domain-containing ribonucleoprotein pseudogene NW_004955472 1335239 1335980 - 102012954 AGCD01053386 MODEL 39133158 snrna U6 U6 spliceosomal RNA 8889042 protein-coding Lrrc34 leucine rich repeat containing 34 INVOLVED IN gene expression (ortholog); telomere maintenance (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal dominant dyskeratosis congenita 1 (ortholog); Fanconi-Bickel syndrome (ortholog) NW_004955420 44454 66222 - 102015015 AGCD01020530;GBBH01149709;XM_005382958;XM_005382959 XP_005383015;XP_005383016 MODEL 10178959 ncrna LOC106150207 uncharacterized LOC106150207 NW_004955406 38161672 38166605 + 106150207 AGCD01006594;GBBH01132115;XR_001236874 MODEL 8757519 ncrna LOC102016279 uncharacterized LOC102016279 NW_004955422 11711943 11726590 - 102016279 AGCD01022765;GBDF01180653;XR_260867 MODEL 9020056 protein-coding Esyt3 extended synaptotagmin 3 FOUND IN cytoplasmic side of plasma membrane (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog) NW_004955501 537195 585640 - 102016293 AGCD01064032;AGCD01064033;AGCD01064034;GBDJ01208218;GBDK01433210;XM_005406863 XP_005406920 MODEL 39132725 snrna U6 U6 spliceosomal RNA 8878988 protein-coding Lrrc58 leucine rich repeat containing 58 NW_004955427 19896034 19911233 - 102022947 AGCD01027388;GBBH01024743;XM_005386619 XP_005386676 MODEL 8952717 pseudo LOC102012956 septin-2 pseudogene NW_004955474 8331644 8332821 - 102012956 AGCD01054549 MODEL 8716974 protein-coding Vamp2 vesicle associated membrane protein 2 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); calmodulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN calcium-ion regulated exocytosis (ortholog); cellular response to insulin stimulus (ortholog); eosinophil degranulation (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin secretion pathway; vasopressin signaling pathway; ASSOCIATED WITH common variable immunodeficiency (ortholog); Diamond-Blackfan anemia (ortholog); dyskeratosis congenita (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955467 8793296 8796771 + 102023680 AGCD01051472;GBCE01120199;GBDF01080447;XM_005399431 XP_005399488 MODEL 9028937 protein-coding Nfkbid NFKB inhibitor delta ENCODES a protein that exhibits NF-kappaB binding (ortholog); INVOLVED IN negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of NF-kappaB transcription factor activity (ortholog); negative regulation of T cell differentiation in thymus (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); common variable immunodeficiency 12 (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN nucleus (ortholog) NW_004955468 2680934 2688797 + 102015827 AGCD01051832;AGCD01051833;GBDK01316865;XM_005399942;XM_013522539 XP_005399999;XP_013377993 MODEL 8895184 protein-coding Lrrc36 leucine rich repeat containing 36 ASSOCIATED WITH autosomal dominant dy